GWAS563740_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS563740_H (skin hydration measurement QTL GWAS563740 (human)) Homo sapiens

Symbol: GWAS563740_H
Name: skin hydration measurement QTL GWAS563740 (human)
RGD ID: 406914764
Trait: skin hydration measurement
Measurement Type: skin water level   (CMO:0002766)    
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3889,356,192 - 9,356,193RGD_MAPPER_PIPELINEGRCh38
GRCh3789,213,702 - 9,213,703RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563740_HHumanskin water level  IAGPrs138684226405850206 GWAS_CATALOGPMID:35313536

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38636719LOC105379228uncharacterized LOC105379228893514629359682Human

Position Markers

Peak: (rs138684226)
Human AssemblyChrPosition (strand)Source
GRCh3889,356,192 - 9,356,193RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
406914764GWAS563740_Hskin hydration measurement QTL GWAS563740 (human)0.000001skin hydration measurementskin water level (CMO:0002766)893561929356193Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS563740_H GCST90104592 Facial skin hydration 730 Korean ancestry individuals T NR 0.000001 6 rs138684226 19.91 skin hydration measurement (EFO:0009586)
 PMID:35313536
Database Acc Id Source(s)
GWAS Catalog GCST90104592 GWAS Catalog

RGD Curation Notes
Note Type Note Reference