GWAS563727_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS563727_H (skin hydration measurement QTL GWAS563727 (human)) Homo sapiens

Symbol: GWAS563727_H
Name: skin hydration measurement QTL GWAS563727 (human)
RGD ID: 406914751
Trait: skin hydration measurement
Measurement Type: skin water level   (CMO:0002766)    
LOD Score: Not Available
P Value: 8.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38747,930,897 - 47,930,898RGD_MAPPER_PIPELINEGRCh38
GRCh37747,970,494 - 47,970,495RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563727_HHumanskin water level  IAGPrs75043305405850206Based on the EFO term IDGWAS_CATALOGPMID:35313536

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563727_HHumanskin hydration measurement  IAGPrs75043305405850206 GWAS_CATALOGPMID:35313536
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352736PKD1L1polycystin 1 like 1, transient receptor potential channel interacting74777461447960906Human

Position Markers

Peak: (rs75043305)
Human AssemblyChrPosition (strand)Source
GRCh38747,930,897 - 47,930,898RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558711BP56_HBlood pressure QTL 56 (human)2.240.000002Blood pressuresystolic73634937162349371Human
1559132SAPOB3_HSerum apolipoprotein B level QTL 3 (human)20.4Apolipoprotein levelapolipoprotein B73289107458891074Human
2302781MAMTS16_HMammary tumor susceptibility QTL 16 (human)0.033Mammary tumor susceptibility73634937162349371Human
406914751GWAS563727_Hskin hydration measurement QTL GWAS563727 (human)0.0000008skin hydration measurementskin water level (CMO:0002766)74793089747930898Human
2289453BW297_HBody weight QTL 297 (human)3.83Body weightbody mass index72334946449349464Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS563727_H GCST90104592 Facial skin hydration 730 Korean ancestry individuals C NR 8E-7 6.097 rs75043305 9.887 skin hydration measurement (EFO:0009586)
 PMID:35313536
Database Acc Id Source(s)
GWAS Catalog GCST90104592 GWAS Catalog

RGD Curation Notes
Note Type Note Reference