GWAS563599_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS563599_H (skin hydration measurement QTL GWAS563599 (human)) Homo sapiens

Symbol: GWAS563599_H
Name: skin hydration measurement QTL GWAS563599 (human)
RGD ID: 406914623
Trait: skin hydration measurement
Measurement Type: skin water level   (CMO:0002766)    
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812130,174,550 - 130,174,551RGD_MAPPER_PIPELINEGRCh38
GRCh3712130,659,095 - 130,659,096RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563599_HHumanskin water level  IAGPrs7953082405850206 GWAS_CATALOGPMID:35313536

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563599_HHumanskin hydration measurement  IAGPrs7953082405850206 GWAS_CATALOGPMID:35313536
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs7953082)
Human AssemblyChrPosition (strand)Source
GRCh3812130,174,550 - 130,174,551RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406914623GWAS563599_Hskin hydration measurement QTL GWAS563599 (human)0.000006skin hydration measurementskin water level (CMO:0002766)12130174550130174551Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS563599_H GCST90104592 Facial skin hydration 730 Korean ancestry individuals T NR 0.000006 5.222 rs7953082 8.533 skin hydration measurement (EFO:0009586)
 PMID:35313536
Database Acc Id Source(s)
GWAS Catalog GCST90104592 GWAS Catalog

RGD Curation Notes
Note Type Note Reference