GWAS563597_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS563597_H (skin hydration measurement QTL GWAS563597 (human)) Homo sapiens

Symbol: GWAS563597_H
Name: skin hydration measurement QTL GWAS563597 (human)
RGD ID: 406914621
Trait: skin hydration measurement
Measurement Type: skin water level   (CMO:0002766)    
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381140,597,628 - 40,597,629RGD_MAPPER_PIPELINEGRCh38
GRCh371140,619,178 - 40,619,179RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563597_HHumanskin water level  IAGPrs140588512405850206 GWAS_CATALOGPMID:35313536

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563597_HHumanskin hydration measurement  IAGPrs140588512405850206 GWAS_CATALOGPMID:35313536
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1605967LRRC4Cleucine rich repeat containing 4C114011419941459652Human

Position Markers

Peak: (rs140588512)
Human AssemblyChrPosition (strand)Source
GRCh381140,597,628 - 40,597,629RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559104SCL15_HSerum cholesterol level QTL 15 (human)2.60.06Lipid levelhyperlipidemia susceptibility111589236841892368Human
406914621GWAS563597_Hskin hydration measurement QTL GWAS563597 (human)0.000007skin hydration measurementskin water level (CMO:0002766)114059762840597629Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS563597_H GCST90104592 Facial skin hydration 730 Korean ancestry individuals A NR 0.000007 5.155 rs140588512 6.49 skin hydration measurement (EFO:0009586)
 PMID:35313536
Database Acc Id Source(s)
GWAS Catalog GCST90104592 GWAS Catalog

RGD Curation Notes
Note Type Note Reference