GWAS558813_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS558813_H (coffee consumption measurement QTL GWAS558813 (human)) Homo sapiens

Symbol: GWAS558813_H
Name: coffee consumption measurement QTL GWAS558813 (human)
RGD ID: 406909837
Trait: coffee consumption measurement
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3810114,511,206 - 114,511,207RGD_MAPPER_PIPELINEGRCh38
GRCh3710116,270,965 - 116,270,966RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS558813_HHumancoffee consumption measurement  IAGPrs77962058405850206 GWAS_CATALOGPMID:37106081
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1346152ABLIM1actin binding LIM protein 110114431110114801373Human

Position Markers

Peak: (rs77962058)
Human AssemblyChrPosition (strand)Source
GRCh3810114,511,206 - 114,511,207RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407283719GWAS932695_Hskin hydration measurement QTL GWAS932695 (human)0.000003skin hydration measurementskin water level (CMO:0002766)10114511206114511207Human
406909837GWAS558813_Hcoffee consumption measurement QTL GWAS558813 (human)4e-08coffee consumption measurement10114511206114511207Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS558813_H GCST90267275 Coffee intake (weighted GWA) 94,643 European ancestry individuals G NR 4E-8 7.398 rs77962058 0.20875 coffee consumption measurement (EFO:0006781)
 PMID:37106081
GWAS932695_H GCST90104592 Facial skin hydration 730 Korean ancestry individuals G NR 0.000003 5.523 rs77962058 11.83 skin hydration measurement (EFO:0009586)
 PMID:35313536
Database Acc Id Source(s)
GWAS Catalog GCST90267275 GWAS Catalog

RGD Curation Notes
Note Type Note Reference