Glom22 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Glom22 (Glomerulus QTL 22) Rattus norvegicus

Symbol: Glom22
Name: Glomerulus QTL 22
RGD ID: 2317755
Previously known as: Crescentic glomerulonephritis QTL 3; Crgn3
Trait: urine protein amount   (VT:0005160)    
Measurement Type: urine protein level   (CMO:0000591)    
LOD Score: 3.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2111,481,482 - 32,355,910RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0111,314,658 - 34,993,348RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0112,920,275 - 36,395,486RGDRnor5.0
RGSC_v3.411 - 11,860,328RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: LEW/NHsd WKY/NCrl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
LEW/NHsd  (IEA)
WKY/NCrl  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans. Aitman TJ, etal., Nature. 2006 Feb 16;439(7078):851-5.
2. Data registered by Dr. Aitman Personal communication between Dr. Aitman and the RGD curators.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41057305LOC120098788uncharacterized LOC12009878811190503611913976Rat
7653582LOC102546491uncharacterized LOC10254649111193454012088738Rat
7620758LOC102546604uncharacterized LOC10254660411207361212099782Rat
7546851LOC102546831uncharacterized LOC10254683111216969212289440Rat
11357155LOC108349492uncharacterized LOC10834949211222771812234666Rat
11364909LOC108349493uncharacterized LOC10834949311226868712276265Rat
41261577LOC120098791uncharacterized LOC12009879111228025712285820Rat
620112Cited2Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 211231242612314869Rat
1307979Txlnbtaxilin beta11240484512449977Rat
41289337LOC120098792developmental pluripotency-associated protein 5A-like11243850612441174Rat
1586115Hsp90aa1-ps2heat shock protein 90 alpha family class A member 1, pseudogene 211249488512496646Rat
1304818Hecahdc homolog, cell cycle regulator11252544512575358Rat
1583256AbraclABRA C-terminal like11265495112665143Rat
1307131Reps1RALBP1 associated Eps domain containing 111269774212775562Rat
9246970Ect2lepithelial cell transforming 2 like11277570512857538Rat
1310326Ccdc28acoiled-coil domain containing 28A11285766812872944Rat
7709341LOC102549233uncharacterized LOC10254923311287300512890018Rat
7676044LOC102549339uncharacterized LOC10254933911292387212947646Rat
1308124Nhsl1NHS-like 111295652513188580Rat
40936004LOC120100161U6 spliceosomal RNA11306786113067967Rat
1311553Hebp2heme binding protein 211319498213201777Rat
1309903Arfgef3ARFGEF family member 311324557813404319Rat
1560303Smokl1sperm motility kinase like 111344112013451989Rat
1310294Perpp53 apoptosis effector related to PMP2211354206713554514Rat
11404601LOC10834876960S ribosomal protein L7a pseudogene11365780113658593Rat
1589275Tnfaip3TNF alpha induced protein 311370921113724291Rat
41312817LOC120098793uncharacterized LOC12009879311376777613771837Rat
1586113Rpl10a-ps13ribosomal protein L10A, pseudogene 1311378048913781254Rat
7505831LOC102550206uncharacterized LOC10255020611379689813838511Rat
11452393LOC10834972640S ribosomal protein S6 pseudogene11386791813868679Rat
41133462LOC120098794uncharacterized LOC12009879411396290913979037Rat
41195287Rps2-ps34ribosomal protein S2, pseudogene 3411407029014072753Rat
1305997Olig3oligodendrocyte transcription factor 311408125914083336Rat
41340848LOC120098795uncharacterized LOC12009879511410039714118505Rat
1586112Cptp-ps1ceramide-1-phosphate transfer protein, pseudogene 111413220714138351Rat
40969921LOC120098796uncharacterized LOC12009879611423540814243329Rat
41183496Sub1-ps3SUB1 regulator of transcription, pseudogene 311426429814265312Rat
620570Ifngr1interferon gamma receptor 111433316714351799Rat
1303169Il22ra2interleukin 22 receptor subunit alpha 211435373614377844Rat
1307335Il20rainterleukin 20 receptor subunit alpha11442421514494226Rat
41286023LOC120098799uncharacterized LOC12009879911445455814462032Rat
41158208LOC120097186uncharacterized LOC12009718611449401614512881Rat
1309428Slc35d3solute carrier family 35, member D311456548214573581Rat
1308483Pex7peroxisomal biogenesis factor 711458269814646686Rat
7601783LOC10254760460S ribosomal protein L27a-like11466327114663713Rat
7605452LOC102547411uncharacterized LOC10254741111468074314684752Rat
1306565Map3k5mitogen-activated protein kinase kinase kinase 511468577614904935Rat
41348685LOC120100374small nucleolar RNA SNORA42/SNORA80 family11482858714828721Rat
7499806LOC102547350uncharacterized LOC10254735011482977214845233Rat
1308866Map7microtubule-associated protein 711491043315037574Rat
41107286LOC120098800uncharacterized LOC12009880011502561015026234Rat
41005445LOC120098801uncharacterized LOC12009880111503629615043478Rat
41175611LOC120100154U6 spliceosomal RNA11506729615067402Rat
1309704Bclaf1BCL2-associated transcription factor 111508843615117666Rat
6494892Mtfr2mitochondrial fission regulator 211512323215138632Rat
621016Pde7bphosphodiesterase 7B11517400115493267Rat
41198301LOC120098802uncharacterized LOC12009880211556374615573829Rat
41331278LOC120100369small nucleolar RNA SNORA4111567916915679309Rat
1303040Ahi1Abelson helper integration site 111576248515891213Rat
1560020MybMYB proto-oncogene, transcription factor11593977115973367Rat
1308509Hbs1lHBS1-like translational GTPase11609252916170082Rat
41024257Rpl23a-ps3ribosomal protein L23a, pseudogene 311615578316163479Rat
1590218Aldh8a1aldehyde dehydrogenase 8 family, member A111618394016203385Rat
41312082LOC120100169U6 spliceosomal RNA11624352816243631Rat
1560849Themisthymocyte selection associated11643390616623889Rat
11363865LOC10834900860S ribosomal protein L7a pseudogene11653594916536761Rat
7744936Amn1-ps1antagonist of mitotic exit network 1, pseudogene 111653730916537787Rat
41228825Atg4b-ps1autophagy related 4B, cysteine peptidase, pseudogene 111655334516558705Rat
41078939LOC120098804uncharacterized LOC12009880411672294416736191Rat
619706Ptprkprotein tyrosine phosphatase, receptor type, K11673889617236687Rat
41177791LOC120098806uncharacterized LOC12009880611679110416795556Rat
41357357LOC120098805uncharacterized LOC12009880511688652316887639Rat
1589061Rplp0-ps4ribosomal protein lateral stalk subunit P0, pseudogene 411735763717358522Rat
1586110Ruvbl1-ps2RuvB-like AAA ATPase 1, pseudogene 211751953517521754Rat
1308889Lama2laminin subunit alpha 211767267518320641Rat
41325772LOC120100129U6 spliceosomal RNA11776047217760578Rat
41248032Npm1-ps5nucleophosmin 1, pseudogene 511800684618007514Rat
41314157LOC120098807uncharacterized LOC12009880711824565718317592Rat
41071539LOC120100143U6 spliceosomal RNA11832812518328231Rat
1305053Arhgap18Rho GTPase activating protein 1811840353118637306Rat
9075724LOC103690928U6 snRNA-associated Sm-like protein LSm5 pseudogene11846343218469878Rat
41104967LOC120097699cytochrome b-c1 complex subunit 10-like11875161218751912Rat
1598314Rbs10l2ribosomal protein S10 like 211894812418948790Rat
1305474L3mbtl3L3MBTL histone methyl-lysine binding protein 311898876319089247Rat
1587834Samd3sterile alpha motif domain containing 311910076719148241Rat
2321467Tpt1l3tumor protein, translationally-controlled 1 like 311910738919108208Rat
1564024Tmem200atransmembrane protein 200A11932364619408324Rat
41146272Rnu11-3RNA, U11 small nuclear 311938143719381570Rat
1559962Hmgb2-ps6high mobility group box 2, pseudogene 611940916119410260Rat
41302774LOC120098808uncharacterized LOC12009880811959611119606529Rat
1586689Calm1-ps2calmodulin 1, pseudogene 211971054019711425Rat
11385252Rpl36a-ps9ribosomal protein L36A, pseudogene 911975479819755162Rat
1586664Smlr1small leucine-rich protein 111983739019858906Rat
1563977Epb41l2erythrocyte membrane protein band 4.1-like 211986301020037795Rat
7511531LOC102552728uncharacterized LOC10255272812007906220087734Rat
1303071Akap7A-kinase anchoring protein 712008719020217799Rat
2321841Ccnb2-ps2cyclin B2, pseudogene 212009973220101236Rat
41067050LOC120100438small nucleolar RNA SNORA1712011976620119889Rat
1589982Ahcy-ps10adenosylhomocysteinase, pseudogene 1012032070620322406Rat
41043647LOC120100398U2 spliceosomal RNA12047052420470672Rat
2150Arg1arginase 112047587820488422Rat
1307671Med23mediator complex subunit 2312049031520558461Rat
41183125LOC120098836uncharacterized LOC12009883612056147420565071Rat
708511Enpp3ectonucleotide pyrophosphatase/phosphodiesterase 312056370020635044Rat
7532311LOC102553363uncharacterized LOC10255336312064633620663699Rat
628825Enpp1ectonucleotide pyrophosphatase/phosphodiesterase 112069874620763741Rat
621392Ccn2cellular communication network factor 212080219920805315Rat
7650092LOC102553526uncharacterized LOC10255352612093016520935165Rat
7624072LOC102553457uncharacterized LOC10255345712093516520952028Rat
1593146Mrpl30-ps10mitochondrial ribosomal protein L30, pseudogene 1012106800321068796Rat
1310033Moxd1monooxygenase, DBH-like 112107512421165348Rat
11437209Rpl36a-ps17ribosomal protein L36A, pseudogene 1712111964521120113Rat
619747Stx7syntaxin 712119707521237320Rat
11437431LOC108349187uncharacterized LOC10834918712123747721243704Rat
11452897Rps29-ps21ribosomal protein S29, pseudogene 2112126179721262125Rat
631383Taar9trace amine-associated receptor 912127497221275988Rat
631390Taar8ctrace amine-associated receptor 8C12128984321290877Rat
631386Taar8btrace amine-associated receptor 8B12130297821307489Rat
631391Taar8atrace amine associated receptor 8A12133276321333887Rat
1594397Taar7i-pstrace amine associated receptor 7i, pseudogene12135270821353774Rat
631385Taar7htrace amine-associated receptor 7h12137349321374569Rat
631388Taar7gtrace amine-associated receptor 7g12138736021388436Rat
631393Taar7f-pstrace amine-associated receptor 7f, pseudogene12139567621396564Rat
631394Taar7etrace-amine-associated receptor 7e12140171621402792Rat
631395Taar7dtrace-amine-associated receptor 7d12140932521410401Rat
1359258Taar7ctrace amine-associated receptor 7C12142936421430440Rat
631392Taar7btrace amine-associated receptor 7b12144083221441908Rat
631387Taar7atrace amine-associated receptor 7a12145093321452009Rat
631384Taar6trace amine-associated receptor 612145847521459512Rat
1359185Taar5trace amine-associated receptor 512146992321470936Rat
631382Taar4trace amine-associated receptor 412148105021482093Rat
1359566Taar3trace amine-associated receptor 312149153821492566Rat
1311240Taar2trace amine associated receptor 212150029021504259Rat
621621Taar1trace-amine-associated receptor 112151774221518740Rat
1310075Vnn1vanin 112153708421547395Rat
1560609Vnn3vanin 312157136421583626Rat
1306962Slc18b1solute carrier family 18 member B112162823521670807Rat
6499508LOC100910237uncharacterized LOC10091023712167994021680668Rat
62024Rps12ribosomal protein S1212168085421683010Rat
41042371LOC120100344small nucleolar RNA SNORD10112168155721681630Rat
41230696Snord100small nucleolar RNA, C/D box 10012168226921682343Rat
41244766Snora33small nucleolar RNA, H/ACA box 3312168260321682729Rat
9302186LOC103690933uncharacterized LOC10369093312170462321734218Rat
11365258LOC108349443uncharacterized LOC10834944312185917221870434Rat
7579399LOC102554376uncharacterized LOC10255437612216858822169892Rat
1307099Eya4EYA transcriptional coactivator and phosphatase 412217227522415978Rat
40933802LOC120098871uncharacterized LOC12009887112234033222351065Rat
7678966LOC102555465uncharacterized LOC10255546512257657822594738Rat
620523Tcf21transcription factor 2112270135322704212Rat
41115603LOC120098885uncharacterized LOC12009888512276637922777891Rat
1597456Tbpl1TATA-box binding protein like 112277789222803305Rat
1310175Slc2a12solute carrier family 2 member 1212280306822862204Rat
7630698LOC102555830uncharacterized LOC10255583012286840122877359Rat
3668Sgk1serum/glucocorticoid regulated kinase 112298025723098122Rat
11368884LOC108349236uncharacterized LOC10834923612310406023112500Rat
41261521LOC120100131U6 spliceosomal RNA12313135023131456Rat
41077590LOC120098893uncharacterized LOC12009889312313267323172438Rat
113875701700020N01RiklRIKEN cDNA 1700020N01 gene like12325955723395640Rat
11512463LOC108349469uncharacterized LOC10834946912330225523315783Rat
41124938LOC120100484small nucleolar RNA U1312340034023400445Rat
11414134LOC108348899uncharacterized LOC10834889912348657323493321Rat
7583283LOC102546868uncharacterized LOC10254686812353050623533251Rat
1587386Fth1-ps4ferritin heavy chain 1, pseudogene 412363807123638977Rat
1306801Clvs2clavesin 212373566023842685Rat
9257174LOC103690942solute carrier family 2, facilitated glucose transporter member 3 pseudogene12379865323799648Rat
1586108Zbed4-ps1zinc finger, BED-type containing 4, pseudogene 112390376923906388Rat
619856Trdntriadin12395565124410494Rat
41235294Trnaa-agc77transfer RNA alanine (anticodon AGC) 7712458968624589766Rat
7740967Nkain2sodium/potassium transporting ATPase interacting 212466862725877051Rat
41332180Trnav-cac7transfer RNA valine (anticodon CAC) 712512645025126530Rat
40938986Rnu6-1001RNA, U6 small nuclear 100112519679325196899Rat
40964934LOC120100455small nucleolar RNA SNORA1712526492725265029Rat
11496872LOC10834907140S ribosomal protein S27-like12533649425337281Rat
40941038Rnu4-5RNA, U4 small nuclear 512544589825446060Rat
1594836Dr1-ps1down-regulator of transcription 1, pseudogene 112564945525650368Rat
1306836Rnf217ring finger protein 21712601666826108736Rat
1594796Tpd52l1TPD52 like 112617203826290704Rat
1307562Hddc2HD domain containing 212629403026313914Rat
1586106Sec24c-ps2SEC24 homolog C, COPII coat complex component, pseudogene 212671385926716732Rat
1586105Hnrnpa1-ps43heterogeneous nuclear ribonucleoprotein A1, pseudogene 4312675747026758537Rat
621405Hey2hes-related family bHLH transcription factor with YRPW motif 212682213126832218Rat
11415566Trnae-cuc1transfer RNA glutamic acid (anticodon CUC) 112684641326846484Rat
1566426Ncoa7nuclear receptor coactivator 712685622827016950Rat
621603Hint3histidine triad nucleotide binding protein 312703593627045799Rat
727798Trmt11tRNA methyltransferase 11 homolog12705443727109765Rat
1586034Dnaja4-ps1DnaJ heat shock protein family (Hsp40) member A4, pseudogene 112732226827323406Rat
1593465Cenpwcentromere protein W12752532427530464Rat
41274044LOC120100449small nucleolar RNA SNORA1712761898427619106Rat
11398775LOC10834850860S ribosomal protein L7a pseudogene12765349227655379Rat
41030689LOC120100112U4 spliceosomal RNA12774229627742439Rat
41327994LOC120097700uncharacterized LOC12009770012778739427789150Rat
1586104Hdac1-ps17Histone deacetylase 1, pseudogene 1712801008128010909Rat
1563246Rspo3R-spondin 312828391428368661Rat
41224548Hnrnpa1-ps23heterogeneous nuclear ribonucleoprotein A1, pseudogene 2312838267628386857Rat
1306482Rnf146ring finger protein 14612845886428475758Rat
1359654Echdc1ethylmalonyl-CoA decarboxylase 112847635428507173Rat
11465027Leg1-ps1liver enriched gene 1, pseudogene 112857121028583888Rat
7636033Arf1-ps5ADP-ribosylation factor 1, pseudogene 512859712228600478Rat
1307525Kiaa0408LKiaa0408-like12861560028630309Rat
11479453Mtcl3MTCL family member 312862903628701416Rat
41092469LOC120100446small nucleolar RNA SNORA1712874163928741754Rat
1311933Leg1liver enriched gene 112879990228816230Rat
7746808Zfpl2zinc finger protein like 212886591728875433Rat
6494479Zfp502zinc finger protein 50212888439028908726Rat
1589918Bcl2l13-ps1Bcl2-like 13, pseudogene 112889484128901203Rat
1565215Rpl26-ps2ribosomal protein L26, pseudogene 212891793728918420Rat
1564978Lrrc14bleucine rich repeat containing 14B12892147528925646Rat
735106Ccdc127coiled-coil domain containing 12712892842028935885Rat
621557Sdhasuccinate dehydrogenase complex flavoprotein subunit A12893596528960936Rat
41092135Eif1-ps5eukaryotic translation initiation factor 1, pseudogene 512894424028944805Rat
1311239Pdcd6programmed cell death 612896651828982188Rat
1559857Ahrraryl-hydrocarbon receptor repressor12899363429088673Rat
11446120LOC108349507uncharacterized LOC10834950712907865029084116Rat
621790Exoc3exocyst complex component 312909129829122056Rat
3720Slc9a3solute carrier family 9 member A312912463329167912Rat
1566336Cep72centrosomal protein 7212922531229255294Rat
1310121Tppptubulin polymerization promoting protein12925711129281134Rat
1564281Zdhhc11zinc finger, DHHC-type containing 1112929633429327227Rat
1307359Brd9bromodomain containing 912932998129357285Rat
1308516Trip13thyroid hormone receptor interactor 1312935709329402078Rat
41220638LOC120100379small nucleolar RNA SNORA2112936727429367411Rat
1311459Nkd2NKD inhibitor of WNT signaling pathway 212944289829470839Rat
1359672Slc12a7solute carrier family 12 member 712947269229554246Rat
1594328Slc6a19solute carrier family 6 member 1912958619129604964Rat
69352Slc6a18solute carrier family 6 member 1812960728829621925Rat
9078384LOC103690946activated RNA polymerase II transcriptional coactivator p15 pseudogene12963011729632569Rat
70494Terttelomerase reverse transcriptase12963721329659561Rat
1307896Clptm1lCLPTM1-like12966754529683530Rat
3715Slc6a3solute carrier family 6 member 312970944329750413Rat
1311599Lpcat1lysophosphatidylcholine acyltransferase 112976607029816401Rat
41201839LOC120098986uncharacterized LOC12009898612990898529924691Rat
1306375Mrpl36mitochondrial ribosomal protein L3612996548129968896Rat
1584802Ndufs6NADH:ubiquinone oxidoreductase subunit S612996883329977423Rat
41050934LOC120098989uncharacterized LOC12009898912998124829993418Rat
1309309Irx4iroquois homeobox 413003056130039549Rat
41095055LOC120097701uncharacterized LOC12009770113015796330160240Rat
1309834Irx2iroquois homeobox 213066096030666378Rat
7681875LOC102553527uncharacterized LOC10255352713109632531105986Rat
40955162LOC120098992uncharacterized LOC12009899213117776731197773Rat
1590841Rpl10a-ps11ribosomal protein L10A, pseudogene 1113120294431203499Rat
1309060Irx1iroquois homeobox 113129461531300444Rat
41057629LOC120098995uncharacterized LOC12009899513139434731396128Rat
11375087LOC108349508uncharacterized LOC10834950813217249432206222Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34662D1Mgh215012234064722340797Ratregion
36303D1Rat626511933357119333836Ratregion
37296D1Rat14821111576058215760793Ratregion
37364D1Rat15023811524559815245841Ratregion
35467D1Rat717311543162115431794Ratregion
37198D1Rat18622511532110015321325Ratregion
37974D1Rat21124313105084031051081Ratregion
36568D1Rat417011148131211481482Ratregion
36590D1Rat16015512845987428460027Ratregion
36640D1Rat1416613235591032356093Ratregion
34878D1Rat313611172494211725077Ratregion
35685D1Rat1012812469741724697545Ratregion
35853D1Rat912912952149329521616Ratregion
35885D1Rat814212887978028879880Ratregion
38028D1Rat12110312076315820763261Ratregion
40704D1Rat25220512339999023400201Ratregion
38640D1Rat15320712070439820704605Ratregion
40086D1Rat25114312742866727428818Ratregion
39086D1Rat23913413178872531788853Ratregion
42064D1Arb223911381137413811615Ratregion
42077D1Arb332612234059822340924Ratregion
42264D1Rat46311012220216622202271Ratregion
42444D1Rat32921711206940612069621Ratregion
42445D1Rat49113911294663112946770Ratregion
42446D1Rat38921111483195914832174Ratregion
42448D1Rat39220011912178019121980Ratregion
42449D1Rat39123811964618819646425Ratregion
42451D1Rat47920412016619620166426Ratregion
42451D1Rat47920412016622220166426Ratregion
42452D1Rat39420612812535928125552Ratregion
42453D1Rat47822112491183924912057Ratregion
42454D1Rat39321112817879628178996Ratregion
40768D1Rat25011711371715813717273Ratregion
41656D1Rat37716512974323529743400Ratregion
43180D1Got1012811284625212846380Ratregion
43182D1Got1424511345060313450845Ratregion
43183D1Got1517511241507812415253Ratregion
43185D1Got925611332372613323984Ratregion
43187D1Got1815411521867215218826Ratregion
43188D1Got1219611415491514155106Ratregion
43189D1Got2112511531327815313403Ratregion
43191D1Got2318011821206118212241Ratregion
43192D1Got2416511863955918639724Ratregion
43193D1Got1115011653480616534956Ratregion
43194D1Got2517311878235418782525Ratregion
43195D1Got1918611727253717272723Ratregion
43196D1Got2220411851322218513426Ratregion
43197D1Got2620612023483820235046Ratregion
43198D1Got2920212232122222321426Ratregion
43200D1Got2714912298244022982586Ratregion
43201D1Got3114612284279422842940Ratregion
43204D1Got3430012833116228331462Ratregion
43205D1Got3725312846122828461481Ratregion
43206D1Got3517912808592828086107Ratregion
43661D1Got28325613200363932003890Ratregion
60238D1Got27320212970402129704223Ratregion
60243D1Got3213612629534526295481Ratregion
60244D1Got3618713001973330019920Ratregion
60245D1Got3818512909814429098329Ratregion
625791D1Got2021911534181115342030Ratregion
66403D1Mco418012903803729038251Ratregion
66609D1Mco3419311347446913474678Ratregion
66688D1Uia1520112867125728671458Ratregion
1576372D1Ztm1015211524841715248567Ratregion
1576374D1Ztm822211520283215203054Ratregion
1576384D1Ztm923411518893515189169Ratregion
1632082D1Cebr1018812991673329916921Ratregion
1627243D1Mco7217412580818825808362Ratregion
1627347D1Mco7324813006477630065024Ratregion
1627499D1Mco7419613193062231930818Ratregion
1628396D17Got22215113110931331109465Ratregion
1629318D1Cebr1116412951554529515709Ratregion
1629386D1Wox8215012405052124050671Ratregion
1638813D1Got30517313230874832308921Ratregion
1641531D1Wox5114312970884929708992Ratregion
1640652D1Got43320612558681925587025Ratregion
1635008D1Got37228211261573912616017Ratregion
1635563D1Got3019111860661118606702Ratregion
1636822D1Got36314712624678026246927Ratregion
1637068D17Got2219913075895930759055Ratregion
1637228D1Cebr1220312950620229506405Ratregion
1637337D1Got3038612821629328216379Ratregion
1632478D17Got22430013204344432043744Ratregion
2315150D1Mco10417913228523332285412Ratregion
2315162D1Mco10218413224973532249921Ratregion
2315186D1Mco10518813233341032333598Ratregion
2315192D1Mco10315113227305632273209Ratregion
7206012Meis218611231340312313589Ratregion
7193103AA92619218411209946312099647Ratregion
5035839PMC22491P150012010043920100939Ratregion
5035865PMC262378P113913066445730664596Ratregion
5038614Vnn111612154381021543926Ratregion
5035923PMC310936P110513003437530034480Ratregion
5036055Tcf2112412270160722701731Ratregion
5036181D13Jpk210713110930031109409Ratregion
5039254RH12760020011517996615180166Ratregion
5036787AU04920318213127907331279255Ratregion
5035500BM38960421911472775414727973Ratregion
5035587RH1286013111231458512314716Ratregion
7206230Ctgf55712080271020803267Ratregion
5031496AU04813218512440911924409304Ratregion
5026226RH13139919611370943713709633Ratregion
5031612AU04773722611334234313342569Ratregion
5034185RH14169118512962164429621829Ratregion
5026294RH13166018712946856229468749Ratregion
5028925RH14284310811994399519944103Ratregion
5028987RH14308324211477311514773357Ratregion
5029031RH14325216711301034413010511Ratregion
5031704AU04742819711312392013124117Ratregion
5034492BF40931321312629418126294394Ratregion
5029329RH14438322111295556712955787Ratregion
5029335RH14440519211852949618529688Ratregion
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5035436BE10686420911451659314516802Ratregion
5035244BM38438215412836052728360687Ratregion
5035280BM38606120511490404814904249Ratregion
5035326BM38495320712023996120240168Ratregion
5030197BF40168819312279809822798291Ratregion
5032929RH13699915012179018521790335Ratregion
5027617BB16129212611277531912775445Ratregion
5033169RH13783620612021605120216257Ratregion
5030471BF39788015111534037815340529Ratregion
5030483BF39791221312051179220512005Ratregion
5025418RH12824020711616967716169884Ratregion
5030671BE10755917512383759223837767Ratregion
5025494RH12853719712966765229667849Ratregion
5030843BE12063115012946562329465773Ratregion
5031047BI29713717611280676312806943Ratregion
5051887RH9471513312970864529708778Ratregion
5054957RH14352314411464627314646417Ratregion
5054961RH14352529811209423512094546Ratregion
5051304RH13455619012080237620802566Ratregion
5053523RH14269819712536160825361805Ratregion
5053573RH14272710612861559828615704Ratregion
5053603RH14274427212910326729103539Ratregion
5056191RH14423618412925532829255512Ratregion
5056403RH14435817112944374829443919Ratregion
5056413RH14436420711679337816793585Ratregion
5056425RH14437126012280339622803656Ratregion
5051885RH9471420012912578329125983Ratregion
5059526AW52469919312626307826263271Ratregion
5057664BE10127617513003459330034768Ratregion
5058538AI5557459112080227420802365Ratregion
5059586BE09735616011324656713246727Ratregion
5052460AU04042412012379748523797605Ratregion
5052531AI42646624013129986831300108Ratregion
5058982BE10266615811319630313196461Ratregion
5059732BI29183921611850732718507543Ratregion
5058484BI29043720912082262220822833Ratregion
5059192BF38762115712338643023386587Ratregion
5053291RH14256310311483338014833483Ratregion
5059356AW53021018611318796513188151Ratregion
5050866RH13430318412048817720488361Ratregion
5050410RH13404018312009977920099962Ratregion
5052793RH14227715411277405612775373Ratregion
5054317RH14315514411589089215891036Ratregion
5050634RH13417018612076870520768891Ratregion
5051487AI83529910911231455512314664Ratregion
5054723RH14338810912151649521516604Ratregion
5051036RH13440018612896119428961380Ratregion
5051042RH13440418312996591629966099Ratregion
5043372RH12998819412049044820490642Ratregion
5044808RH13081521911468337814684659Ratregion
5041248RH12874818012404721524047395Ratregion
5043784RH13022518011613351116133691Ratregion
5045192RH13103721812153762621537844Ratregion
5045734RH13134819712925716529257362Ratregion
5046064RH13153720312847655728476760Ratregion
5041706RH12901119911252556112525760Ratregion
5041714RH12901618011832043618320616Ratregion
5046404RH13173320612107534121075547Ratregion
5045014RH13093321512996554329965758Ratregion
5045174RH13102618312912189829122081Ratregion
5046164RH13159521811287439512874613Ratregion
5049292RH13339718711511730415117491Ratregion
5046724RH13191820411589183315892037Ratregion
5047920RH13260520612752921827529424Ratregion
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5047134RH13215320913066104630661255Ratregion
5047250RH13221920813006065830060866Ratregion
5042106RH12924319211986308019863272Ratregion
5042226RH12931215512298031722980472Ratregion
5047370RH13228821512629498426295199Ratregion
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5049510RH13352219912892554028925737Ratregion
5040106RH12809318012753010727530287Ratregion
5039436RH12770518612847549228475678Ratregion
5039528RH12775720212701668427016886Ratregion
5040434RH12828118711231379612313983Ratregion
7191235Calm1011971107619711989Ratregion
5042458RH12944521512937580629376021Ratregion
5042582RH12952219111285776412857955Ratregion
5040950RH12857718111673762116737802Ratregion
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5040622RH12838919312947294229473135Ratregion
5074036RH13778215912704750127047660Ratregion
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5072328RH1367858613129986631299952Ratregion
5076372RH13913712312847080928470932Ratregion
5076548RH13924012412017497420175098Ratregion
5074512RH13806013112611289726113028Ratregion
5074652RH13814014812303553423035682Ratregion
5076574RH13925514412428317024283314Ratregion
5074782RH13821520012336127623361476Ratregion
5075010RH13834724812460095624601203Ratregion
5077102RH13956222012384796823848188Ratregion
5077250RH13964820011265530312655503Ratregion
5075580RH13867617512898189628982071Ratregion
5077202RH13962122012076331920763539Ratregion
5077312RH13968418312182160621821789Ratregion
5077464RH13977118912241555222415741Ratregion
5077496RH13978918711643165616431843Ratregion
5077934RH14004420412179052421790728Ratregion
5077934RH14004420412179052421790728Ratregion
5078146RH14017018012629019326290373Ratregion
5080066RH14136318511435153614351721Ratregion
5070546RH13456320412162835921628563Ratregion
5080496RH14161220811508683115087039Ratregion
5074044RH13778718412861620928616393Ratregion
5071964RH13538618411532949915329683Ratregion
5074468RH13803421111791035917910570Ratregion
5074486RH13804523012587659025876820Ratregion
5073488RH13746518411501989815020082Ratregion
5073492RH13746718411588269915882883Ratregion
5072268RH13675112311278697012787093Ratregion
5072346RH13679617512629042626290601Ratregion
5071698RH13523318311287166512871848Ratregion
5061774AW53335519012869754828697738Ratregion
5063426BE10768315811317848713178645Ratregion
5066630AU04824317512678897826789153Ratregion
5066748AU04817411913110933631109386Ratregion
5066942AU04805917112640398026404153Ratregion
5067176AU04791413513090917530909310Ratregion
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5068014AU04740223312627075726270990Ratregion
5068162AU04731123113039481330395044Ratregion
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5069983RH9440017312970803729708210Ratregion
5069606AU04638619012117504921175233Ratregion
5069062AU04674810413092773930927838Ratregion
5069776AU02881210411716668417166783Ratregion
5069264AU04661222713061646830616690Ratregion
5060288AW53112917611584260415842780Ratregion
5061972BF39701815811938125319381411Ratregion
5063610BF40440119712628187326282070Ratregion
5065246BE12127920411587901315879217Ratregion
5060890BF40125717512301713623017311Ratregion
5062704BF40391012012120440321204523Ratregion
5064412BI30214117411289235612892530Ratregion
5060598BE11055415813067368930673847Ratregion
5065552BF41242012012619209926192219Ratregion
5065774BF40640810812474485524744963Ratregion
5065808BE10990915011340307513403225Ratregion
5060780BF38912815612846498728465143Ratregion
5061196BE09920319611356062313560819Ratregion
5061276BE11143718312832017828320361Ratregion
5063074BF41028219111899173118991922Ratregion
5063100BF39838021711939844519398661Ratregion
5063146BI30135719212225053922250731Ratregion
5064682BF39955723912836834328368582Ratregion
5066298PMC140821P116911610473916104908Ratregion
5084210AA8494139412406840324068497Ratregion
5086867BM38820316411346814613468310Ratregion
5082069BF40931620411500897915009183Ratregion
5087064BQ19428217411350640313506577Ratregion
5087398EST-CFZ9775635211771811217718464Ratregion
5082603BE11984115111447508414475235Ratregion
5086500BQ20563815011316547213165622Ratregion
5087540PMC304098P210112972440229724503Ratregion
5088919AU04884822712124385421244081Ratregion
5089081AU04894313212944930029449432Ratregion
5089105AU04895715012076108520761237Ratregion
5089917AU04944014911508179315081942Ratregion
5083145BF39087216011610502816105188Ratregion
5090697AU04990720311521859815218801Ratregion
5083919AI40666820211511712415117326Ratregion
5081563AA9261929911209951912099618Ratregion
5081875BE11860119011287287712873067Ratregion
5082301BE11914215312848067228480825Ratregion
5085094BQ20957716811600277216002940Ratregion
5085407BE10071717512847689928477074Ratregion
5088289AU0484819912701003827010135Ratregion
5088477AU04859318412023483820235024Ratregion
5088565AU04864512012603208626032206Ratregion
5085183AA79957014812732349627323644Ratregion
5088805AU04878326912298230822982576Ratregion
5088829AU04879529513102487231025167Ratregion
5081052RH14193719011503711815037308Ratregion
5090033AU04951028911787099917871286Ratregion
5090205AU04961314112681359426813735Ratregion
5090263AU04964714311334243513342578Ratregion
5089023AU04890919511567294415673139Ratregion
5080744RH14175718011324322813243408Ratregion
5084772AI17200614312395586223956005Ratregion
5504532PMC27918P136412965735329657717Ratregion
5505140Irx28113066257530663265Ratregion
5505089Taar481312148110421481917Ratregion
5505087Taar182612151780821518634Ratregion
5505091Taar990112127503021275931Ratregion
5505093Taar580712147005421470861Ratregion
5505095Taar278512150047221501257Ratregion
5505097Taar389012149165521492545Ratregion
5506147Irx36513066439730664462Ratregion
5506300DXS984982611971396219714788Ratregion
5506274D14S1058140611455858114559987Ratregion
5506973fc42c01.y159912821631328216912Ratregion
5507009fj17g12.x1012811276628113629Ratregion
5507133UniSTS:22476416011595900715959167Ratregion
5499607MARC_2026-2027:991932441:135311910750919107862Ratregion
5500013UniSTS:23613726412732357627323841Ratregion
5500037UniSTS:23631932512324212223242447Ratregion
5500041UniSTS:23631720011509903415099234Ratregion
5502275RH12424210412363871923638823Ratregion
5503414D1S282795611462526214626218Ratregion
5501123PMC140821P213211616881016168942Ratregion
5505218D10Csu144611448329014483736Ratregion
5505220D10Csu3011510129115101884Ratregion
Position Markers

Flank 1: (D1Rat14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2132,355,910 - 32,356,093 (+)MAPPER
Rnor_6.0134,993,348 - 34,993,530NCBI
Rnor_5.0136,395,486 - 36,395,668UniSTS
RGSC_v3.4172,480,946 - 2,481,129RGD
RGSC_v3.4172,480,947 - 2,481,129UniSTS
RGSC_v3.1172,480,805 - 2,481,238RGD
Celera130,981,511 - 30,981,693UniSTS
SHRSP x BN Map118.27UniSTS
SHRSP x BN Map118.27RGD
FHH x ACI Map127.8599RGD
Peak: (D1Rat246)
Rat AssemblyChrPosition (strand)Source
mRatBN7.212,244,390 - 2,244,622 (+)MAPPER
Rnor_6.011,868,045 - 1,868,274NCBI
Rnor_5.013,564,603 - 3,564,832UniSTS
RGSC_v3.412,436,832 - 2,437,062RGD
RGSC_v3.412,436,833 - 2,437,062UniSTS
RGSC_v3.112,436,833 - 2,437,062RGD
Celera1793,147 - 793,378UniSTS
RH 3.4 Map116.7RGD
RH 3.4 Map116.7UniSTS
SHRSP x BN Map10.04UniSTS
SHRSP x BN Map10.04RGD
Cytogenetic Map1p13UniSTS
Flank 2: (D1Rat4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2111,481,312 - 11,481,482 (+)MAPPER
Rnor_6.0111,314,489 - 11,314,658NCBI
Rnor_5.0112,920,106 - 12,920,275UniSTS
RGSC_v3.4111,859,997 - 11,860,328RGD
RGSC_v3.4111,860,049 - 11,860,218UniSTS
RGSC_v3.1111,860,049 - 11,860,218RGD
Celera19,949,930 - 9,950,099UniSTS
RH 3.4 Map1131.2UniSTS
RH 3.4 Map1131.2RGD
RH 2.0 Map146.9RGD
SHRSP x BN Map19.25RGD
FHH x ACI Map17.84RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)11532110019121980Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
731169Bp153Blood pressure QTL 1530.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13105084033492143Rat
2316649Bp344Blood pressure QTL 344arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13224973533038814Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general inducing agent: intravenous injection of 0.1ml of rabbit nephrotoxic serum to rat glomerular basement membrane 2293335
qtl_general number of animals used: 200-220g, 177 F2 males 2293335
qtl_general measurement method: 10 days after induction, rats were killed and blood collected from the abdominal aorta 2293335