Eae26 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Eae26 (Experimental allergic encephalomyelitis QTL 26) Rattus norvegicus

Symbol: Eae26
Name: Experimental allergic encephalomyelitis QTL 26
RGD ID: 2317587
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: experimental autoimmune encephalomyelitis severity score   (CMO:0001419)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2488,656,681 - 103,194,984RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0489,777,552 - 99,067,150RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04154,593,964 - 163,844,298RGDRnor5.0
RGSC_v3.4488,462,327 - 104,416,171RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: DA/ZtmKini PVG.1AV1/Kini 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Multiple loci comprising immune-related genes regulate experimental neuroinflammation. Marta M, etal., Genes Immun. 2010 Jan;11(1):21-36. Epub 2009 Aug 13.
2. Data registered by Dr. Olsson Personal communication between Dr. Olsson and the RGD curators.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
70884Eif2ak3eukaryotic translation initiation factor 2 alpha kinase 34102805495102866914Rat
619907Serbp1Serpine1 mRNA binding protein 149640158796421816Rat
620026Il12rb2interleukin 12 receptor subunit beta 249642461596515327Rat
2654Gadd45agrowth arrest and DNA-damage-inducible, alpha49615478996157091Rat
2590Fabp1fatty acid binding protein 14103191015103194791Rat
620468Igkv28immunoglobulin kappa chain variable 284101302903101303452Rat
621516Gng12G protein subunit gamma 1249601111896134767Rat
620960Hint1-ps1histidine triad nucleotide binding protein 1, pseudogene 149210099492101568Rat
735071RSA-14-44RSA-14-44 protein49525165795253029Rat
3729Sncasynuclein alpha48969642089797240Rat
69251Hpgdshematopoietic prostaglandin D synthase49436842694397931Rat
68368Grid2glutamate ionotropic receptor delta type subunit 249241501993892472Rat
1307592Lin28clin-28 homolog C (C. elegans)49541756695420497Rat
1309144Thnsl2threonine synthase-like 24103112974103132122Rat
1311080Ndnfneuron-derived neurotrophic factor49494474994987414Rat
1359215Vom1r89vomeronasal 1 receptor 8949594262695943550Rat
1310889Mad2l1mitotic arrest deficient 2 like 149590669295918885Rat
1311377Rpiaribose 5-phosphate isomerase A4102723712102749374Rat
1309640Smarcad1SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1`49431144194379184Rat
1562720Spmip9sperm microtubule inner protein 94102885695102892934Rat
1561547LOC500180similar to IG KAPPA CHAIN V-V REGION K2 PRECURSOR4100511688100512362Rat
1561816Foxi3forkhead box I34102933487102937655Rat
1560028Qrfprlpyroglutamylated RFamide peptide receptor like49467837094757034Rat
1563231RGD1563231similar to immunoglobulin kappa-chain VK-14102208069102208647Rat
1565731Ccser1coiled-coil serine-rich protein 149015387391391441Rat
1359498Tacstd2tumor-associated calcium signal transducer 249670795096709650Rat
1564699Hmgb1-ps19high-mobility group box 1, pseudogene 1949574279595743265Rat
1587188Eif4g1-ps3eukaryotic translation initiation factor 4 gamma 1, pseudogene 349559026595592593Rat
1587189Nono-ps10non-POU domain containing, octamer-binding, pseudogene 1049415739794158751Rat
1586003LOC502825hypothetical LOC5028254101805860101806662Rat
1586004Fbl-ps6fibrillarin, pseudogene 64101510664101511950Rat
1587247Fbl-ps5fibrillarin, pseudogene 54101138821101139593Rat
1587248Mmrn1multimerin 148987540889950814Rat
1561722RGD1561722similar to immunoglobulin light chain49813078798131675Rat
1564696RGD1564696similar to immunoglobulin light chain variable region4102304440102305139Rat
1565171Atoh1atonal bHLH transcription factor 149391206893914163Rat
1565690Gprin3GPRIN family member 348856370888657603Rat
1586368Il23rinterleukin 23 receptor49658056896672540Rat
1591097Eno1-ps7enolase 1, pseudogene 748987254889873844Rat
1588449C17h6orf62-ps1similar to human chromosome 6 open reading frame 62, pseudogene 14101258112101260037Rat
1587548Havcr1-ps1hepatitis A virus cellular receptor 1, pseudogene 149563296895633283Rat
1588732Tnip3TNFAIP3 interacting protein 349486725894908780Rat
1592227Eif5-ps10eukaryotic translation initiation factor 5, pseudogene 104101363702101365081Rat
1588783Ptma-ps1prothymosin alpha, pseudogene 149406540194065784Rat
1588700Prdm5PR/SET domain 549507573695237921Rat
1597311Gtdc1-ps1glycosyltransferase-like domain containing 1, pseudogene 14102443892102445203Rat
2318882LOC100365500mCG142154-like4101432815101433399Rat
2319569LOC100361705rCG64259-like4100487837100488968Rat
2319042LOC100365438mCG141619-like4101478715101479376Rat
2320327Igkvl-ps21immunoglobulin kappa variable like, pseudogene 214100209006100209643Rat
2321310LOC100360848rCG64259-like4102343796102344458Rat
2322825LOC100363522hypothetical protein LOC10036352249780939697810460Rat
2320855Mak16-ps1MAK16 homolog, pseudogene 149936447499369594Rat
2320908LOC100361052rCG64257-like4102446979102447648Rat
2321092LOC100360968mCG142527-like49994200399942688Rat
2321912Ppp6c-ps1protein phosphatase 6, catalytic subunit, pseuidogene 148997047089997261Rat
2323358LOC100363282Igk protein-like49938974799390292Rat
2324539LOC100362515hypothetical LOC1003625154101065901101066416Rat
6488311LOC100912188uncharacterized LOC10091218849615649096204457Rat
6495277LOC100911032uncharacterized LOC10091103249800125798002145Rat
7521956Znf431l-ps5zinc finger protein 431 like, pseudogene 54100210123100220831Rat
7583063LOC102549525uncharacterized LOC1025495254102802796102805439Rat
7706369Hdac2-ps1histone deacetylase 2, pseudogene 14102624284102625962Rat
9102747Igkvl-ps16immunoglobulin kappa variable like, pseudogene 1649734899497349801Rat
9386529Ywhaq-ps4tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta, pseudogene 449449111694491862Rat
9252629Igkvl-ps12immunoglobulin kappa variable like, pseudogene 124101726300101727506Rat
9264819Tshr-ps1thyroid stimulating hormone receptor, pseudogene 149214265692143138Rat
9330732LOC103690609NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 pseudogene49782873997829070Rat
9438141LOC103690610Ig kappa chain V-V region L6-like49711573297119085Rat
9439280LOC103692161uncharacterized LOC10369216149757291097573408Rat
11051993Igkvl-ps11immunoglobulin kappa variable like, pseudogene 1149858862498589555Rat
11458713Igkvl-ps2immunoglobulin kappa variable like, pseudogene 24100774851100775585Rat
11051991Igkvl-ps10immunoglobulin kappa variable like, pseudogene 1049976417199765272Rat
11051998Igkvl-ps18immunoglobulin kappa variable like, pseudogene 184101003409101004411Rat
11362919Igkvl-ps13immunoglobulin kappa variable like, pseudogene 1349696857496969477Rat
11450417LOC108350840uncharacterized LOC10835084049087966590931441Rat
11364654Igkvl-ps17immunoglobulin kappa variable like, pseudogene 1749749492997495415Rat
11051987Igkvl-ps20immunoglobulin kappa variable like, pseudogene 204101195589101196676Rat
11051990Igkvl-ps1immunoglobulin kappa variable like, pseudogene 14100900754100901355Rat
11052016LOC102551948Ig kappa chain V-II region RPMI 6410-like49791651997917533Rat
11052049LOC690813Ig kappa chain V-IV region-like4101838285101839132Rat
11451272LOC108350862uncharacterized LOC10835086248876271388780061Rat
11440908LOC108350839high mobility group protein B1-like49130690291309095Rat
11383082Igkvl-ps19immunoglobulin kappa variable like, pseudogene 194100736032100736741Rat
11497379LOC103691800Ig kappa chain V-IV region-like4101645320101645700Rat
41353377LOC120102733small nucleolar RNA SNORA1749823881598238917Rat
41378383LOC120102307uncharacterized LOC1201023074102761831102791308Rat
41323200LOC120102581U6 spliceosomal RNA49528482095284926Rat
41112623LOC120102736small nucleolar RNA SNORA1749717502897175121Rat
41113583LOC120102728small nucleolar RNA SNORA1749681038496810504Rat
41169229LOC120102722small nucleolar RNA SNORA1749826317398263300Rat
41205249Rnu6-936RNA, U6 small nuclear 93649920039799200501Rat
41277236LOC120102585U6 spliceosomal RNA49914578099145884Rat
41381715LOC120102288uncharacterized LOC12010228848944218589475598Rat
41381944LOC120102305uncharacterized LOC1201023054101437202101439905Rat
41114178LOC120102583U6 spliceosomal RNA49926872299268826Rat
41170451LOC120102696small nucleolar RNA SNORA1749713082197130958Rat
41251011LOC120102700small nucleolar RNA SNORA1749709688597097017Rat
41253364LOC120102725small nucleolar RNA SNORA1749858397298584104Rat
41327009LOC120102729small nucleolar RNA SNORA1749800423498004360Rat
41386173Trnal-aag20transfer RNA leucine (anticodon AAG) 2049503448895034569Rat
41091703Fbl-ps4fibrillarin, pseudogene 44101416548101417555Rat
41328136LOC120102650small nucleolar RNA SNORA4849582653795826676Rat
41361057Rpl21-ps8ribosomal protein L21, pseudogene 849578372795784432Rat
41362761Igkvl-ps8immunoglobulin kappa variable like, pseudogene 849953181099532249Rat
41094682LOC120102721small nucleolar RNA SNORA1749813375998133886Rat
41120297LOC120102574U6 spliceosomal RNA4102735624102735728Rat
41120707LOC120102598U6 spliceosomal RNA49921932699219429Rat
41364677LOC120102648small nucleolar RNA SNORA484102978143102978286Rat
41365694Igkvl-ps7immunoglobulin kappa variable like, pseudogene 749896141998965084Rat
41121586LOC120102292uncharacterized LOC12010229249643512196439487Rat
41263518Igkvl-ps5immunoglobulin kappa variable like, pseudogene 549887513898875778Rat
41213638LOC120102652small nucleolar RNA SNORA484102675250102675393Rat
41180823LOC120102592U6 spliceosomal RNA49916978599169889Rat
41193354LOC120102493uncharacterized LOC12010249349329282193299590Rat
41215295LOC120102732small nucleolar RNA SNORA1749715488097155000Rat
41125163LOC120102717small nucleolar RNA SNORA1749849391198494037Rat
41195085LOC120102492uncharacterized LOC12010249249081616490869483Rat
41269840Nudt1-ps1nudix hydrolase 1, pseudogene 149438167994382041Rat
41398122LOC12010254260S ribosomal protein L21-like4102797216102797569Rat
41196388LOC120102291uncharacterized LOC12010229149641626996417217Rat
41270403Igkvl-ps4immunoglobulin kappa variable like, pseudogene 449936335399363814Rat
41104383LOC120102494uncharacterized LOC12010249449389284393911169Rat
41349965Igkvl-ps9immunoglobulin kappa variable like, pseudogene 94101040345101043988Rat
41401399Spcs2-ps2signal peptidase complex subunit 2, pseudogene 24102869047102869887Rat
41081979LOC120102712U1 spliceosomal RNA49614656196146710Rat
41107864LOC120102589U6 spliceosomal RNA49929007299290176Rat
41107960LOC120102702small nucleolar RNA SNORA1749700031297000443Rat
41108878Igkvl-ps14immunoglobulin kappa variable like, pseudogene 1449928277299285103Rat
40946187Igkvl-ps3immunoglobulin kappa variable like, pseudogene 349934046699340968Rat
40974521LOC120102579U6 spliceosomal RNA49925367099253774Rat
40952956Arpc5l-ps4actin related protein 2/3 complex, subunit 5-like, pseudogene 449942323999424376Rat
40926323LOC120102600U6 spliceosomal RNA49362423893624344Rat
40977765LOC120102731small nucleolar RNA SNORA1749748051797480618Rat
40929032LOC120102616U7 small nuclear RNA49406112494061185Rat
40961802LOC120102590U6 spliceosomal RNA49934623299346336Rat
40936449LOC120102716small nucleolar RNA SNORA1749757666097576791Rat
41008980LOC120102656small nucleolar RNA SNORA484102572182102572325Rat
40991721LOC120102726small nucleolar RNA SNORA1749499311894993219Rat
40942068LOC120102704small nucleolar RNA SNORA1749722965597229787Rat
40994091Paics-ps3phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 349164710291648078Rat
41075263Igkvl-ps6immunoglobulin kappa variable like, pseudogene 649901452399015161Rat
41049106Igkvl-ps15immunoglobulin kappa variable like, pseudogene 1549932280799323306Rat
41312835LOC120102520uncharacterized LOC12010252048894704088947688Rat
41316092LOC120102682small nucleolar RNA SNORA1749685191196852043Rat
41136119LOC120102301uncharacterized LOC1201023014100744447100787990Rat
41255876LOC120102647small nucleolar RNA SNORA4849414489094145033Rat
41221465LOC120102615U7 small nuclear RNA49406097694061038Rat
41059287LOC120102620U7 small nuclear RNA49171696791717031Rat
41033320LOC120102595U6 spliceosomal RNA49930944099309544Rat
41059548LOC120102691small nucleolar RNA SNORA1749698993796990067Rat
41337280LOC120102727small nucleolar RNA SNORA1749688594096886060Rat
41236250LOC120102679U1 spliceosomal RNA4103011258103011413Rat
41305950LOC120102564U6 spliceosomal RNA4101286236101286342Rat
41044388LOC120102751U2 spliceosomal RNA49015113790151328Rat
41045910LOC120102715small nucleolar RNA SNORA1749796989597970021Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10560D4Mit121794103194805103194984Ratregion
10561D4Wox201444103194798103194942Ratregion
10562D4Arb212804103194656103194936Ratregion
10782D4Mit81034102684777102684881Ratregion
33905D4Mit1129549136052791360801Ratregion
35286D4Rat3715149330831593308457Ratregion
35325D4Rat4117449613012396130297Ratregion
36978D4Rat3813949585319395853334Ratregion
36544D4Rat7716549512805695128221Ratregion
35669D4Rat3516449136661091366774Ratregion
35673D4Rat391544102981170102981329Ratregion
40586D4Rat23122648865668188656903Ratregion
40020D4Rat17316049248951492489678Ratregion
40856D4Rat17414249422276294222908Ratregion
41586D4Rat17213349466112194661248Ratregion
43820D4Got7527349261823292618505Ratregion
60803D4Wox432549144941691449741Ratregion
60452D4Got7028849319926293199550Ratregion
60454D4Got7227549078304890783319Ratregion
60455D4Got7320549401004894010253Ratregion
60456D4Got7416349299129992991462Ratregion
60458D4Got7727849336204893362326Ratregion
60459D4Got7810849654062496540729Ratregion
60460D4Got7913149787685597876986Ratregion
60460D4Got7913149787685597876986Ratregion
60461D4Got8016549512799195128156Ratregion
60462D4Got8117749472249694722672Ratregion
62514D4Uia828749643386196434152Ratregion
1631098D4Got21314349321653693216679Ratregion
1628377D4Got2151314100834579100834710Ratregion
1628883D4Got29021849166258191662799Ratregion
1641721D4Got31212949618367396183803Ratregion
1639783D4Got30922149862880598629022Ratregion
1635287D4Got2472934101095876101096164Ratregion
7205888px-35f113548912259089122725Ratregion
7206492UniSTS:546664158149391229393913874Ratregion
5039316RH1276361954102688085102688280Ratregion
5036472Rab7-ps123149647428596474514Ratregion
5026088RH13086618149642154496421725Ratregion
5031376PMC153617P199448969698589697976Ratregion
5026144RH1310812204102445899102446119Ratregion
5034586BF41650114849282631592826463Ratregion
5029419Snca13048977854189778671Ratregion
5029775BI27811721049885200998852219Ratregion
5032615RH13465919249615496696155158Ratregion
5035256BM38445518349608032396080506Ratregion
5025016BB38566810249391401793914119Ratregion
5025822RH1298192144102723870102724084Ratregion
5056987UniSTS:23402926748969673889697005Ratregion
5057462BF41870621848995016289950380Ratregion
5054637RH14333820049641905896419258Ratregion
5055907RH1440711404103131482103131622Ratregion
5056669RH14451110449214266292142766Ratregion
5053353RH14259910849080102690801134Ratregion
5044860RH1308452054103113095103113300Ratregion
5048714RH13306320149431222094312787Ratregion
5048040RH13267421049642458396424793Ratregion
5049550RH13354518049498159594981775Ratregion
5072560RH1369202014100738744100738936Ratregion
5072560RH1369202014100791061100791262Ratregion
5079854RH14124118048918590389185985Ratregion
5078796RH14055718449591244195912625Ratregion
5074484RH13804316149389218293892343Ratregion
5066844AU04811727649409150994091763Ratregion
5067564AU04766915449615041696150570Ratregion
5068790AU0469298749114043091140517Ratregion
5070362AI84273810149613137796131478Ratregion
5060178BF40062924849431871694318964Ratregion
5062360BI2887792504103184239103184489Ratregion
5062184BF39752823749646795996468196Ratregion
5065874AI57567418749670804196708228Ratregion
5066336PMC153617P210548969646189696566Ratregion
5066426AU04836324348994718789947430Ratregion
5066554AU04828813748870520588705342Ratregion
5087899Grid29649385576393855859Ratregion
5087897Grid212849385566493855792Ratregion
5089555AU04922517249376086793761041Ratregion
5088705AU04872810849901713099017238Ratregion
5089985AU04948124149078853490788775Ratregion
5088345AU04851314749526102095261167Ratregion
5090389AU0497222174102768533102768752Ratregion
5088759AU0487601944103030125103030315Ratregion
5082595BE11981315649017649890176650Ratregion
5083127BF39081515049375655593756705Ratregion
5507690Igk-V157049770958597710155Ratregion
5504260G4326910849641862496418732Ratregion
5504408PMC196178P12484102697318102697566Ratregion
5504969Tshr11249214266292142774Ratregion
5499739UniSTS:2343962124100791207100791419Ratregion
5502766RPIA1034102731716102732464Ratregion
Position Markers

Flank 1: (D4Rat231)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2488,656,681 - 88,656,903 (+)MAPPER
Rnor_6.0489,777,552 - 89,777,772NCBI
Rnor_5.04154,593,964 - 154,594,184UniSTS
RGSC_v3.4488,462,327 - 88,462,549RGD
RGSC_v3.4488,462,328 - 88,462,549UniSTS
RGSC_v3.1488,706,752 - 88,706,974RGD
SHRSP x BN Map443.1UniSTS
SHRSP x BN Map443.1RGD
FHH x ACI Map454.64RGD
Peak: (D4Rat36)
Rat AssemblyChrPosition (strand)Source
Rnor_5.04160,637,811 - 160,638,040NCBI
RGSC_v3.4494,513,620 - 94,513,848RGD
RGSC_v3.1494,758,101 - 94,758,329RGD
RH 3.4 Map4586.1RGD
RH 3.4 Map4586.1UniSTS
SHRSP x BN Map446.49UniSTS
SHRSP x BN Map446.49RGD
FHH x ACI Map459.08RGD
Flank 2: (D4Mit12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24103,194,805 - 103,194,984 (+)MAPPER
Rnor_6.0499,066,972 - 99,067,150NCBI
Rnor_5.04163,844,120 - 163,844,298UniSTS
RGSC_v3.44104,415,992 - 104,416,171RGD
RGSC_v3.44104,415,993 - 104,416,171UniSTS
RGSC_v3.14104,660,473 - 104,660,652RGD
Celera492,370,739 - 92,370,917UniSTS
SHRSP x BN Map448.75UniSTS
SHRSP x BN Map448.75RGD
FHH x ACI Map460.18RGD
Cytogenetic Map4q32UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)457114432102114432Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
2306794Ean2Experimental allergic neuritis QTL 26.4nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)48342841995853334Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
2317587Eae26Experimental allergic encephalomyelitis QTL 26nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)488656681103194984Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
8662350Eae35Experimental allergic encephalomyelitis QTL 356.2blood tumor necrosis factor amount (VT:0008552)inflammatory exudate tumor necrosis factor level (CMO:0001435)4100834579103761084Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4103194805112478794Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general regulates weight loss and severity phenotypes 2317591
qtl_general measurement method: animals were killed 28-40 days after immunization and Eae scored on the scale of 0-4; when the disease was severe the rats were killed 2317591
qtl_general inducing agent: myelin oligodendrocyte glycoprotein aa1-125 2317591
qtl_general confidence interval spans 15.9 Mb 2317591
qtl_general number of animals used:794 G10 generation rats from the advanced intercross line 2317591
qtl_general software used: R/QTL 2317591