Bss59 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bss59 (Bone structure and strength QTL 59) Rattus norvegicus

Symbol: Bss59
Name: Bone structure and strength QTL 59
RGD ID: 2313085
Previously known as: Pqctm3
Trait: long bone metaphysis morphology trait   (VT:0000133)    
Measurement Type: tibia midshaft total cross-sectional area   (CMO:0001715)    
LOD Score: 2.9
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.253,844,018 - 26,141,981RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.053,251,329 - 26,252,076RGD_MAPPER_PIPELINERnor6.0
Rnor_5.053,239,567 - 30,952,938RGDRnor5.0
RGSC_v3.452,965,857 - 26,938,988RGDRGSC3.4
Cross Type: intercross
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic regulation of bone traits is influenced by sex and reciprocal cross in F(2) progeny from GK and F344 rats. Lagerholm S, etal., J Bone Miner Res. 2009 Jun;24(6):1066-74.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
619748Cdh17cadherin 1752526282025314884Rat
69426Oprk1opioid receptor, kappa 151386001613877823Rat
621017LynLYN proto-oncogene, Src family tyrosine kinase51663951216755501Rat
620242Sgk3serum/glucocorticoid regulated kinase family, member 3593457619472243Rat
621349Kcnb2potassium voltage-gated channel subfamily B member 2535670124028564Rat
727868Nsmafneutral sphingomyelinase activation associated factor51951779519578773Rat
708520Vcpip1valosin containing protein interacting protein 1595342479560889Rat
3025Lypla1lysophospholipase 151467960514708774Rat
620108Ncoa2nuclear receptor coactivator 2558356426069693Rat
631423Tp53inp1tumor protein p53 inducible nuclear protein 152425398624272250Rat
621497Sdcbpsyndecan binding protein51947349919517188Rat
620104Gdf6growth differentiation factor 652299624623012567Rat
1307055Cspp1centrosome and spindle pole associated protein 1590771619192402Rat
621037Rps20ribosomal protein S2051681931316820475Rat
620393Pdp1pyruvate dehydrogenase phosphatase catalytic subunit 152544684325455107Rat
2482Cyp7a1cytochrome P450 family 7 subfamily A member 151937697919386676Rat
1305917Npbwr1neuropeptides B and W receptor 151349542613496415Rat
1304709Car8carbonic anhydrase 852130294021402395Rat
1304796Mrpl15mitochondrial ribosomal protein L1551472996614741276Rat
3103MosMOS proto-oncogene, serine/threonine kinase51685995716861264Rat
1305828Dpy19l4dpy-19 like 452435128924410932Rat
1307132Slco5a1solute carrier organic anion transporter family, member 5A1562289386358124Rat
1308557Ubxn2bUBX domain protein 2B51930363419333181Rat
1307386GemGTP binding protein overexpressed in skeletal muscle52521430925225222Rat
1306455Bpnt23'(2'), 5'-bisphosphate nucleotidase 251777568417802570Rat
68323Rab2aRAB2A, member RAS oncogene family52167621921738833Rat
1305371Sox17SRY-box transcription factor 1751501666015022228Rat
1307783Ccne2cyclin E252428507824298258Rat
1303284Trpa1transient receptor potential cation channel, subfamily A, member 1543799994433243Rat
708566St18ST18 C2H2C-type zinc finger transcription factor51258249312914221Rat
1309880Tcea1transcription elongation factor A151463145414668769Rat
1310455Toxthymocyte selection-associated high mobility group box51987499420171272Rat
1309085Ndufaf6NADH:ubiquinone oxidoreductase complex assembly factor 652414771224171981Rat
1312000Asphaspartate-beta-hydroxylase52260387922814107Rat
1312029Plekhf2pleckstrin homology and FYVE domain containing 252409107724106758Rat
1309006Tmem68transmembrane protein 6851649405416524842Rat
1549780Xkr4XK related 451589618816297733Rat
1306507Rad54bRAD54 homolog B52503088525104616Rat
1310301Cops5COP9 signalosome subunit 5591922339210498Rat
1307876Lactb2lactamase, beta 2555690805591843Rat
708554Sulf1sulfatase 1563628966526174Rat
1305496Mscmusculin545473354553206Rat
1309346Rb1cc1RB1-inducible coiled-coil 151316164813225560Rat
1306940Mybl1MYB proto-oncogene like 1595829059618179Rat
1307658Rbm12bRNA binding motif protein 12B52559740525610324Rat
1311403Rrs1ribosome biogenesis regulator 1 homolog597334869735119Rat
1308863Adhfe1alcohol dehydrogenase, iron containing, 1597059669732580Rat
1311764Cpa6carboxypeptidase A6585597458888492Rat
1310681Cibar1CBY1 interacting BAR domain containing 152561399325632440Rat
1305286Plag1PLAG1 zinc finger51690205716956727Rat
1309953Tgs1trimethylguanosine synthase 151652486416558399Rat
1310592Ints8integrator complex subunit 852429554224344642Rat
1310557Rbpjl2recombination signal binding protein for immunoglobulin kappa J region-like 2554646525466381Rat
1307865Prex2phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2579376928253112Rat
1560481Esrp1epithelial splicing regulatory protein 152442761124482157Rat
1561068Mcmdc2minichromosome maintenance domain containing 2592919679337526Rat
1562060Sdr16c6short chain dehydrogenase/reductase family 16C, member 651709520817118713Rat
1560290Sntg1syntrophin, gamma 15998055010794666Rat
68946Penkproenkephalin51718379917189160Rat
1562450Atp6v1hATPase H+ transporting V1 subunit H51437902914484703Rat
1563403Fam110bfamily with sequence similarity 110, member B51878936218929647Rat
1564053RGD1564053similar to hypothetical protein572379687777119Rat
1311921Chd7chromodomain helicase DNA binding protein 752181200721995358Rat
1560793Arfgef1ADP ribosylation factor guanine nucleotide exchange factor 1589820619076326Rat
1564095RGD1564095similar to 60S acidic ribosomal protein P251255128712552204Rat
1560994Eif1-ps8eukaryotic translation initiation factor 1, pseudogene 852109854621099214Rat
1564278RGD1564278similar to splicing-related factor RNPS152462980724632144Rat
1359100Tram1translocation associated membrane protein 1556425795667666Rat
1359260Xkr9XK related 9555303845562168Rat
1559904Virmavir like m6A methyltransferase associated52496120825024660Rat
1549749Cfap418cilia and flagella associated protein 41852399639524015609Rat
1559441RGD1559441similar to MIC2L152472267224769149Rat
1586167Tmem67transmembrane protein 6752553645825589378Rat
1585792Kif1c-ps1kinesin family member 1C, pseudogene 151090616110908936Rat
1585836Tra2a-ps3transformer 2 alpha, pseudogene 351010664210108431Rat
1585679Ppp1r42protein phosphatase 1, regulatory subunit 42592271099274461Rat
1586091Rpl11-ps4ribosomal protein L11, pseudogene 452413611524136752Rat
1586092LOC366310pseudogene for small nuclear RNA U3 (H3.9)52206501822065142Rat
1586095Psmd12-ps1proteasome 26S subunit, non-ATPase 12, pseudogene 151362624113708195Rat
1586096Pcmtd1protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 151228471112355680Rat
1586146Rgs20regulator of G-protein signaling 2051448432014614321Rat
1586147Eef1g-ps4eukaryotic translation elongation factor 1 gamma, pseudogene 4594987619503171Rat
1565999Sdr16c5short chain dehydrogenase/reductase family 16C, member 551701881317043974Rat
1564405Nufip2-ps1nuclear FMR1 interacting protein 2, pseudogene 1542710524273239Rat
1564200Clvs1clavesin 152240838422604281Rat
1564981Scp2-ps1sterol carrier protein 2, pseudogene 151660859516609025Rat
1561849Vxnvexin596592139684684Rat
1563301Rps16-ps4ribosomal protein S16, pseudogene 452152477121525259Rat
1583530Alkal1ALK and LTK ligand 151301972913049913Rat
1563405RGD1563405similar to protein tyrosine phosphatase 4a251753051517532157Rat
1565372RGD1565372similar to Ubiquitin-conjugating enzyme E2 C (Ubiquitin-protein ligase C)51899814819001967Rat
1565647Cyld-ps1CYLD lysine 63 deubiquitinase, pseudogene 151520207415205290Rat
1588818LOC688470similar to ribosomal protein L2452454271424543178Rat
1584848Hnrnpa1-ps5heterogeneous nuclear ribonucleoprotein A1, pseudogene 551085591210856695Rat
1584849Eya1EYA transcriptional coactivator and phosphatase 1548635015101483Rat
1584850Ndufb4-ps8NADH:ubiquinone oxidoreductase subunit B4, pseudogene 8547967974797193Rat
1584867Phb1-ps14prohibitin 1, pseudogene 14553298535331546Rat
1592689Chchd7coiled-coil-helix-coiled-coil-helix domain containing 751695708116969388Rat
1598345Got2-ps2glutamic-oxaloacetic transaminase 2, pseudogene 251221532912216562Rat
1595256Sumo4small ubiquitin-like modifier 451509932215099913Rat
1591751Ybx1-ps1Y box binding protein 1, pseudogene 1570332597034734Rat
1591765Tuba1b-ps1tubulin, alpha 1B, pseudogene 1570293207030910Rat
1589398Tcf24transcription factor 24592746599282876Rat
1597763Dnajb6-ps2DnaJ heat shock protein family (Hsp40) member B6, pseudogene 251687884816879742Rat
1596713Rp1RP1, axonemal microtubule associated51512110415582363Rat
1596418Zfp652-ps1zinc finger protein 652, pseudogene 151787251017899024Rat
2318103Nhp2-ps2NHP2 ribonucleoprotein, pseudogene 251392485214056332Rat
2318732Ago2-ps1argonaute RISC catalytic component 2, pseudogene 151102054911023395Rat
2320072Eif5-ps4eukaryotic translation initiation factor 5, pseudogene 452514896325152683Rat
2319513Txn2-ps1thioredoxin 2, pseudogene 1565529356558546Rat
2318359Tiprl-ps2TOR signaling pathway regulator, pseudogene 251245487912455761Rat
2319590Prdm14PR/SET domain 14560821636092712Rat
2321393LOC100364265ribosomal protein L19-like51688089916898782Rat
2321512Ap4s1-ps1adaptor related protein complex 4 subunit sigma 1, pseudogene 151908004319081080Rat
2321121Mtrfr-ps1mitochondrial translation release factor in rescue, pseudogene 152378676823787484Rat
2324828Psmd1-ps1proteasome 26S subunit, non-ATPase 1, pseudogene 152208005922092892Rat
6495230Rps23-ps1ribosomal protein S23, pseudogene 152451555924516265Rat
6486737LOC100912510uncharacterized LOC10091251051719041417192458Rat
6494602Rps15-ps4ribosomal protein S15, pseudogene 451245778012458197Rat
6502160Ppid-ps3peptidylprolyl isomerase D, pseudogene 351852878218540240Rat
6501591Rack1-ps1receptor for activated C kinase 1, pseudogene 151898710018990913Rat
7488972Mir378bmicroRNA 378b559467235946806Rat
7526543LOC102551006uncharacterized LOC10255100652158814221628171Rat
7520808LOC102548182uncharacterized LOC102548182556719475680129Rat
7637993LOC102552817uncharacterized LOC10255281751497160815016234Rat
7653207LOC102551372uncharacterized LOC10255137252174906421759653Rat
7638920LOC102552309uncharacterized LOC10255230952515280525154273Rat
7640679LOC102549899uncharacterized LOC10254989951943565319454889Rat
7629665LOC102555924uncharacterized LOC10255592452406921124077248Rat
7611658Fsbpfibrinogen silencer binding protein52505800325064283Rat
7618446LOC102549737uncharacterized LOC10254973751325044113272830Rat
7604960LOC102547431uncharacterized LOC10254743152426982624283178Rat
7567361LOC102555640uncharacterized LOC102555640542246724238926Rat
7586726LOC102552692uncharacterized LOC10255269252567482125715582Rat
7734898LOC102548247uncharacterized LOC102548247565406136545453Rat
7711861LOC102549805uncharacterized LOC10254980551328171613326776Rat
7731407LOC102552377uncharacterized LOC10255237752527333925289529Rat
7696412LOC102555885uncharacterized LOC102555885545287604547276Rat
7721328LOC102556004uncharacterized LOC102556004592960849316974Rat
7674456Atp6v1e1-ps1ATPase H+ transporting V1 subunit E1, pseudogene 1564864146488878Rat
7747666Eno1-ps21enolase 1, pseudogene 2152453842024540101Rat
7729019LOC102552020uncharacterized LOC10255202052204894322052627Rat
9135524LOC103695239uncharacterized LOC10369523952455805624608755Rat
9196141Son-ps1SON DNA and RNA binding protein, pseudogene 151846947618473456Rat
9116417LOC103692302uncharacterized LOC10369230252467117324720087Rat
9272632LOC103692300uncharacterized LOC10369230052291604222921564Rat
9323738LOC103695237uncharacterized LOC10369523751619288716195997Rat
9302605LOC103692303uncharacterized LOC10369230352483066924855700Rat
9472653LOC103692301uncharacterized LOC10369230152480548324812407Rat
9452275LOC103692281BET1 homolog pseudogene51167072111671079Rat
9685089Lnc056long non-coding RNA 05652216267422163117Rat
11434367LOC108350932uncharacterized LOC10835093252410676124123754Rat
11449903LOC108350931uncharacterized LOC10835093152222723222235944Rat
11366818Rpl30-ps4ribosomal protein L30, pseudogene 4584204618420804Rat
11453663LOC108350924uncharacterized LOC10835092451804101118060823Rat
11425397LOC108351116uncharacterized LOC108351116567352806753952Rat
11385100LOC108350923uncharacterized LOC10835092351430730214312194Rat
11374185LOC108350929uncharacterized LOC10835092952190195421930923Rat
11375408LOC108350928uncharacterized LOC10835092852157041721574912Rat
11400924Trnas-aga1transfer RNA serine (anticodon AGA) 152399628823996369Rat
11502483LOC108350922uncharacterized LOC108350922583808758383459Rat
11503786LOC108351119ferritin light chain 1 pseudogene52414242024143026Rat
11517012LOC108351080endogenous retrovirus group K member 9 Pol protein-like51373648313737690Rat
11517987LOC10835108140S ribosomal protein S18 pseudogene52206558922074840Rat
41380053LOC120102810uncharacterized LOC120102810564548746457731Rat
41204020LOC120102805uncharacterized LOC120102805550600945159282Rat
41281883LOC120102821uncharacterized LOC12010282152237056722384103Rat
41087792LOC120102808uncharacterized LOC120102808555815695621082Rat
41324050LOC120102828uncharacterized LOC12010282852430018124317387Rat
41384122Srsf3-ps3serine and arginine rich splicing factor 3, pseudogene 351873441318734925Rat
41114642LOC120103224U1 spliceosomal RNA52284666122846823Rat
41205794Trnaa-agc87transfer RNA alanine (anticodon AGC) 87556893565689436Rat
41142696LOC120103375U4 spliceosomal RNA52160213121602278Rat
41359748LOC120103345small nucleolar RNA SNORA1752095404020954161Rat
41091925Hnrnpa1-ps48heterogeneous nuclear ribonucleoprotein A1, pseudogene 4851143347611439810Rat
41092419LOC120103370U4 spliceosomal RNA565781096578255Rat
41362403Eef1e1-ps3eukaryotic translation elongation factor 1 epsilon 1, pseudogene 351945564319457562Rat
41388173Wsb1-ps1WD repeat and SOCS box-containing 1, pseudogene 152488168824891528Rat
41210398LOC120103350small nucleolar RNA SNORA40558334695833590Rat
41390808LOC120103319small nucleolar RNA SNORA1751684576216845890Rat
41120437LOC120102815uncharacterized LOC12010281551673192316761548Rat
41188737LOC120102826uncharacterized LOC12010282652401469424029945Rat
41121936LOC120102814uncharacterized LOC12010281451497213414983916Rat
41098563Pramel7-ps2preferentially expressed antigen in melanoma-like 7, pseudogene 251183103711832415Rat
41395404LOC120103059uncharacterized LOC12010305951628400116429252Rat
41100894LOC120102832RNA-binding protein 12B-A-like52559050025597273Rat
41101046LOC120102830uncharacterized LOC12010283052486926424872255Rat
41182145Snord87small nucleolar RNA, C/D box 87592974899297573Rat
41347757G3bp1-ps2G3BP stress granule assembly factor 1, pseudogene 251973493319737218Rat
41372576LOC120102809uncharacterized LOC120102809560778966099341Rat
41105122LOC120103140uncharacterized LOC120103140567824266796179Rat
41129079LOC120103277small nucleolar RNA SNORA2/SNORA34 family571110097111144Rat
41186497LOC120102811uncharacterized LOC12010281151224979812254124Rat
41228831LOC120103365U2 spliceosomal RNA577717537771881Rat
41271882LOC120103310small nucleolar RNA SNORA17542817024281825Rat
41350556LOC120103214U6 spliceosomal RNA52234882522348930Rat
41081239LOC120102827uncharacterized LOC12010282752403682024043057Rat
41108305Hspd1-ps36heat shock protein family D (Hsp60) member 1, pseudogene 3651449799614499931Rat
41164745Snord54small nucleolar RNA, C/D box 5451681994516820012Rat
41377667LOC120102990prothymosin alpha-like557646715765429Rat
40974341LOC120103228U6 spliceosomal RNA51026308710263191Rat
40976711LOC120102817uncharacterized LOC12010281751808972818103756Rat
40927816LOC120103142uncharacterized LOC12010314252423019924231625Rat
40928183LOC120102807uncharacterized LOC120102807554355395438349Rat
41001063LOC120103384U6 spliceosomal RNA51537542215375528Rat
40938154LOC120102824uncharacterized LOC12010282452301332023022049Rat
41008049LOC120102812uncharacterized LOC12010281251332942413361574Rat
40939148LOC120103320small nucleolar RNA SNORA1751883011718830241Rat
40943670Rnu6-1297RNA, U6 small nuclear 1297592263019226401Rat
41046326LOC120103295small nucleolar RNA SNORA1751981437419814505Rat
41046558LOC120102806uncharacterized LOC120102806553188005323393Rat
41025792LOC120102816uncharacterized LOC12010281651769069117736386Rat
41077767LOC120103251small nucleolar RNA SNORD7351869202518692080Rat
41052978LOC120103297small nucleolar RNA SNORA1751773591417736044Rat
41055096LOC120102823uncharacterized LOC12010282352269711922704317Rat
41152372LOC120103198U6 spliceosomal RNA562025226202625Rat
41314783St13-ps6ST13, Hsp70 interacting protein, pseudogene 652468005024684165Rat
41060632Ccnb1ip1-ps1cyclin B1 interacting protein 1, pseudogene 1542209144224617Rat
41035118LOC120103058uncharacterized LOC12010305851601108516015518Rat
41301908Chtop-ps2chromatin target of PRMT1, pseudogene 252491451624919438Rat
41038477LOC120103270small nucleolar RNA SNORA851321464613214785Rat
41063004LOC120102825uncharacterized LOC12010282552402767024031806Rat
41040765LOC120102820uncharacterized LOC12010282052224295322247572Rat
41020171LOC120102822uncharacterized LOC12010282252265484222679142Rat
41020351LOC120103356U6atac minor spliceosomal RNA52500862725008726Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34387D5Mgh1719951452922514529436Ratregion
34469D5Mgh311952458344324583550Ratregion
34469D5Mgh311952458344324583550Ratregion
34469D5Mgh311952459887824598989Ratregion
34469D5Mgh311952459887824598989Ratregion
34481D5Mgh2812352483880224838943Ratregion
34599D5Mit1823651718969817189930Ratregion
34639D5Pas131052614166926141981Ratregion
36255D5Rat18913252381251823812651Ratregion
37596D5Rat118157559042635904428Ratregion
39686D5Rat119235538440183844247Ratregion
39756D5Rat12320751861599218616199Ratregion
40414D5Rat20712552093858720938712Ratregion
40562D5Rat187172589482288948404Ratregion
40716D5Rat12411651887394718874051Ratregion
40718D5Rat120140581875018187645Ratregion
39992D5Rat21024952351305623513295Ratregion
40250D5Rat12523451739773617397969Ratregion
39160D5Rat7323752483871024838943Ratregion
39338D5Rat20922952250972222510074Ratregion
39338D5Rat20922952250984722510074Ratregion
42312D5Rat248239589591978959394Ratregion
42313D5Rat24920152123768721237888Ratregion
42730D5Rat214229556227075622920Ratregion
42731D5Rat215124593596939359791Ratregion
42734D5Rat21810052316678023166901Ratregion
41480D5Rat12827852450880624509116Ratregion
41480D5Rat12827852450887524509116Ratregion
40800D5Rat12620952404790024048109Ratregion
41076D5Rat121200598232669823460Ratregion
41728D5Rat18820451817359018173792Ratregion
44552D9Wox21136598842169884268Ratregion
43868D5Got3212543281744328386Ratregion
43870D5Wox8163551121595112316Ratregion
43871D16Got27149594531439453292Ratregion
43872D5Rat18612751237395512374084Ratregion
43874D5Got11212652333204623332172Ratregion
43875D5Got10913052307306223073192Ratregion
43876D5Got13518652138987621390062Ratregion
60472D5Got1211577674867767685Ratregion
60478D5Got2199546582474658448Ratregion
60752D5Rat24724351402600914026245Ratregion
69540D5Uwm6195551428455143044Ratregion
69541D5Uwm7179561271396127284Ratregion
69542D5Uwm821851278975112789935Ratregion
69543D5Uwm913951635002416350163Ratregion
69544D5Uwm1012151499583414995947Ratregion
69568D5Uwm56116539579533958063Ratregion
69570D5Uwm57144562519846252128Ratregion
69572D5Uwm5814951479387814794021Ratregion
625790D5Got11119152323022623230415Ratregion
66416D5Mco529052354577523546079Ratregion
66658D5Mco2327151952503919525314Ratregion
66706D5Mco3620051037271110372890Ratregion
66707D5Mco3742352165449021654918Ratregion
1630208D5Got20726551381391613814181Ratregion
1631652D5Got26299582084788208579Ratregion
1631759D5Got295154546582754658431Ratregion
1628062D5Got26125051453776414538012Ratregion
1629035D5Got20321451453226914532484Ratregion
1629653D5Wox2619451386131313861507Ratregion
1641068D5Got20515351454121014541363Ratregion
1641273D5Got32211251219114212191254Ratregion
1641312D5Got32115151654023616540387Ratregion
1633225D5Got20612551396962113969746Ratregion
1639986D5Wox3416751938954419389711Ratregion
1640077D5Uia15976553859995386975Ratregion
1640560D5Got31718351674906616749249Ratregion
1640751D5Mco31923552354595223546187Ratregion
1635180D5Got28020151187609311876294Ratregion
1635380D5Got20412151364416513644286Ratregion
1636283D5Got299272575152057515477Ratregion
1638319D5Got20814451602944716029591Ratregion
1633881D5Got202117589027568902873Ratregion
1634340D5Wox3125651938813419388390Ratregion
1634531D3Got2729252491974524919836Ratregion
7206004Eya1448550137615014209Ratregion
7193066D5Mit1823651718969817189929Ratregion
5035767PMC165443P112151938356819383689Ratregion
5038908RH127402207597060739706280Ratregion
5038982RH12744521951718380617184025Ratregion
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5037169RH9177214251892833618928478Ratregion
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5025146RH12709222251846952118469743Ratregion
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5033233RH13807413751655823716558374Ratregion
5028037MHAa74a4.seq195589621528962347Ratregion
5028208D1Mit296158595326129532770Ratregion
5030849BE120681209591300579130266Ratregion
5031199RH103002144561767856176929Ratregion
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5044696RH130751181596178119617992Ratregion
5048784RH13310321552276055522760770Ratregion
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5048918RH13318118252272493222725114Ratregion
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5048028RH13266720951470498414705193Ratregion
5048266RH13280419752401535324015550Ratregion
5039544RH127766217588880258888242Ratregion
5042194RH12929419151951694019517131Ratregion
5039522RH127754241579378147938055Ratregion
5043052RH12980318252442880224428984Ratregion
5040866RH12852921651467966514679881Ratregion
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5072506RH13688918151675666016756841Ratregion
5076342RH13912013552409352324093658Ratregion
5072626RH136958217556672725667490Ratregion
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5075524RH13864312052427083224270952Ratregion
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5075984RH13891012952277010722770236Ratregion
5075998RH13891817351327157713272664Ratregion
5075066RH13837921452427260524272819Ratregion
5077450RH13976321451780341917803633Ratregion
5077712RH13991418551933129119331476Ratregion
5077860RH14000118051932381519323995Ratregion
5077392RH13973020552260413922604344Ratregion
5077540RH13981519552561375325613948Ratregion
5078424RH14033414251987540919875551Ratregion
5078432RH14034016151079096110791122Ratregion
5079854RH14124118051642937116429453Ratregion
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5078594RH14043415152276909522769246Ratregion
5078046RH14011120351464862114648824Ratregion
5070780RH13470121151517583815176049Ratregion
5079218RH14080414852427206424272212Ratregion
5080252RH14147315051463226414632414Ratregion
5080252RH14147315051463226414632414Ratregion
5071068RH13486815052435399724354147Ratregion
5080438RH14157921951937866019378879Ratregion
5080464RH14159419451228139912281593Ratregion
5078658RH1404739251473806114738153Ratregion
5071672RH13521821952187184721872066Ratregion
5074170RH13786224752554118625541433Ratregion
5072110RH13665618251520593215206114Ratregion
5072110RH13665618251520593215206114Ratregion
5071462RH135096182575353877535569Ratregion
5071506RH13512118751681917716819364Ratregion
5073692RH13758418052401448724014667Ratregion
5061824AW52717123652476961624769852Ratregion
5065108BF40587822651826690918267135Ratregion
5066642AU04823617752343688623437063Ratregion
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5067660AU04761216151945462119454777Ratregion
5067722AU047575164567414786741642Ratregion
5067732AU04756910252152053421520636Ratregion
5067942AU04744423151721760817218054Ratregion
5068412AU04716128251677797716778256Ratregion
5068550AU04707811251374764613747758Ratregion
5069991RH9440617851511031815110494Ratregion
5068986AU04680021451996237219962581Ratregion
5069790AU02867612752395174623951870Ratregion
5062158BE10628222051050382310504043Ratregion
5063596BE10780820251629596216296164Ratregion
5065276BE12133916151932974219329903Ratregion
5062424BF40325520651386018913860395Ratregion
5064416BI30215016551288925012889415Ratregion
5062040BE10609015052261660622616756Ratregion
5064350BI30206516851426690914267077Ratregion
5063288BI30167219351548902215489215Ratregion
5066446AU04835221251719810617198318Ratregion
5086268BF41004610151952843419528535Ratregion
5087424STS-D294955551457139014571445Ratregion
5089781AU049360167597725989772767Ratregion
5082975BF39053417751895532018955497Ratregion
5083159BI27522013252553716725537299Ratregion
5088030Oprk112751386726113867388Ratregion
5088183AU04841725052038911420389364Ratregion
5088191AU048421205540036454003852Ratregion
5090143AU049575217575617507561967Ratregion
5087153BQ20910718351639144716391630Ratregion
5084894AI00926018951957396819574157Ratregion
5085561AI23134315052187389621874046Ratregion
5088753AU04875724151897185518972096Ratregion
5081076RH14195121352250586122506074Ratregion
5085611BM39205421651709276017092976Ratregion
5085900AW53588716052170395221704112Ratregion
5086068AW529472188575339357534123Ratregion
5080804RH141791220563632836363503Ratregion
5082981BF39055615851317448513174643Ratregion
5081360AA92390217752130553321305713Ratregion
5081481AA99856816652181154321811709Ratregion
5083515BF39159212251629085516290977Ratregion
5086801BE114642152590453679045519Ratregion
5081947BE118841202550871955087397Ratregion
5081963BE11892616751473999914740166Ratregion
5507559RH68043103851342313513424173Ratregion
5503654Rbpj499554656335466132Ratregion
5504266G43537142561768146176956Ratregion
5505992UniSTS:49675113152429610724296238Ratregion
5506463GDB:13175647852592491925924997Ratregion
5506473AFM342xc10545921134592784Ratregion
5506735G4487015651789659617896752Ratregion
5506883G4720419251926619219266384Ratregion
5507313fc12d10.x11402570992757100677Ratregion
5500170D4Mit104052159522921595890Ratregion
5500683D19S909052476216924763167Ratregion
5501848MARC_15705-15706:1013524302:116452491660224916766Ratregion
5502431RH1248149651846945818469554Ratregion
Position Markers

Flank 1: (D5Rat119)
Rat AssemblyChrPosition (strand)Source
mRatBN7.253,844,018 - 3,844,247 (+)MAPPER
Rnor_6.053,251,329 - 3,251,557NCBI
Rnor_5.053,239,567 - 3,239,795UniSTS
RGSC_v3.452,965,857 - 2,966,086RGD
RGSC_v3.452,965,858 - 2,966,086UniSTS
RGSC_v3.152,965,812 - 2,966,107RGD
Celera53,437,394 - 3,437,622UniSTS
RH 2.0 Map50.0RGD
SHRSP x BN Map51.1599RGD
Cytogenetic Map5q11UniSTS
Flank 2: (D5Pas1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2526,141,669 - 26,141,981 (+)MAPPER
Rnor_6.0526,251,767 - 26,252,076NCBI
Rnor_5.0530,952,629 - 30,952,938UniSTS
RGSC_v3.4526,938,679 - 26,938,988UniSTS
RGSC_v3.1526,938,678 - 26,938,989RGD
Celera525,460,475 - 25,460,784UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631551Vetf1Vascular elastic tissue fragility QTL 150.0001aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)522822265904428Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 108 males 2312767
qtl_general software used:one-way ANOVA and MAP MANAGER/QTX 2312767
qtl_general measurement method: in the last 3 months modified fat-enriched chow was given; animals were killed at 215 days of age; cortical diaphyseal bone was measured and meta total CSA (mm2) determined by pQCT (peripheral quantitative computed tomography) 2312767
qtl_general lineage: 2 seperate F2 intercrosses were generated one from grandmaternal GK and grandpaternal F344 other from grandmaternal F344 and grandpaternal GK 2312767