Bmd75 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd75 (Bone mineral density QTL 75) Rattus norvegicus

Symbol: Bmd75
Name: Bone mineral density QTL 75
RGD ID: 2313073
Previously known as: Pqctf4
Trait: tibia mineral mass   (VT:1000283)    
Measurement Type: total volumetric bone mineral density   (CMO:0001728)    
LOD Score: 4.1
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,377,404 - 237,938,339RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02231,224,020 - 254,132,424RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02250,573,351 - 272,824,647RGDRnor5.0
RGSC_v3.42224,179,988 - 247,306,073RGDRGSC3.4
Cross Type: intercross
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic regulation of bone traits is influenced by sex and reciprocal cross in F(2) progeny from GK and F344 rats. Lagerholm S, etal., J Bone Miner Res. 2009 Jun;24(6):1066-74.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
620156Ank2ankyrin 22215378028215954015Rat
41269243LOC120101321small nucleolar RNA SNORA172215462676215462807Rat
41145705LOC120101096uncharacterized LOC1201010962215611948215616858Rat
41024232LOC120101097uncharacterized LOC1201010972215724744215740139Rat
41400624Trnav-aac18transfer RNA valine (anticodon AAC) 182215838478215838559Rat
41176776LOC120101095uncharacterized LOC1201010952215862917215883604Rat
1592474Larp7La ribonucleoprotein 7, transcriptional regulator2215997641216012833Rat
1305834Zgrf1zinc finger, GRF-type containing 12216012911216075608Rat
1309061Neurog2neurogenin 22216092709216095276Rat
1304613Alpk1alpha-kinase 12216126939216247180Rat
9154798Ndufb3l2NADH:ubiquinone oxidoreductase subunit B3 like 22216164030216164560Rat
41077523Rpl29-ps5ribosomal protein L29, pseudogene 52216165804216166270Rat
1359151TifaTRAF-interacting protein with forkhead-associated domain2216257926216267635Rat
1311435Ap1aradaptor-related protein complex 1 associated regulatory protein2216276631216309020Rat
40971331Trnaa-agc70transfer RNA alanine (anticodon AGC) 702216300514216300586Rat
1593351Fam241afamily with sequence similarity 241 member A2216344563216375193Rat
41322125LOC120101099uncharacterized LOC1201010992216394260216402371Rat
1565088Tmem258l1transmembrane protein 258 like 12216443294216443612Rat
11427815Rpl21l2ribosomal protein L21 like 22216500790216501303Rat
41348865LOC120101100histone H3.v1-like2216761898216786397Rat
11446748Rpl29l9ribosomal protein L29 like 92217092889217093275Rat
41007455LOC120101128U4 spliceosomal RNA2217231673217231818Rat
41362352LOC120100617uncharacterized LOC1201006172217253485217281761Rat
2320329Oat-ps1ornithine aminotransferase, pseudogene 12217318433217320112Rat
11389356LOC108350289uncharacterized LOC1083502892217657731217658469Rat
3331Pitx2paired-like homeodomain 22217717738217737293Rat
621228Enpepglutamyl aminopeptidase2217781985217851947Rat
41094358Psmb7-ps1proteasome 20S subunit beta 7, pseudogene 12217969270217970788Rat
628880Dcm5Dcm5 protein2218001929218002696Rat
620585Elovl6ELOVL fatty acid elongase 62218063682218174767Rat
2542Egfepidermal growth factor2218219408218302359Rat
1559637Lrit3leucine-rich repeat, Ig-like and transmembrane domains 32218337215218360318Rat
1308948Rrhretinal pigment epithelium derived rhodopsin homolog2218362195218374387Rat
1563995Gar1GAR1 ribonucleoprotein2218375231218382509Rat
620429Cficomplement factor I2218389079218430565Rat
40944945LOC120100942uncharacterized LOC1201009422218425674218436350Rat
1304662Pla2g12aphospholipase A2, group XIIA2218436497218452742Rat
70967Casp6caspase 62218466063218478503Rat
1305326Mcubmitochondrial calcium uniporter dominant negative subunit beta2218479301218549594Rat
1309358Sec24bSEC24 homolog B, COPII coat complex component2218562670218632753Rat
41155962Trnak-uuutransfer RNA lysine (anticodon UUU)2218650664218650736Rat
1590105Col25a1collagen type XXV alpha 1 chain2218755152219154348Rat
41087078LOC120101132U4 spliceosomal RNA2218893592218893722Rat
9069995LOC103691705uncharacterized LOC1036917052218954901218962050Rat
1590098Etnpplethanolamine-phosphate phospho-lyase2219173048219194646Rat
1560708Ostcoligosaccharyltransferase complex non-catalytic subunit2219250549219266076Rat
1309402Rpl34ribosomal protein L342219284373219288108Rat
11382083LOC108350107uncharacterized LOC1083501072219349441219359449Rat
11410644Rpl21l1ribosomal protein L21 like 12219385207219385771Rat
11422469LOC108350291uncharacterized LOC1083502912219431270219437628Rat
41394203LOC120100619uncharacterized LOC1201006192219439426219441145Rat
620241Lef1lymphoid enhancer binding factor 12219666549219779815Rat
9101519Lef1llymphoid enhancer binding factor 1 like2219691441219701617Rat
41380471LOC120100943uncharacterized LOC1201009432219711951219713218Rat
69321Hadhhydroxyacyl-CoA dehydrogenase2219787935219830335Rat
1309433Cyp2u1cytochrome P450, family 2, subfamily u, polypeptide 12219849403219866959Rat
7625966Aimp1-ps1aminoacyl tRNA synthetase complex-interacting multifunctional protein 1, pseudogene 12219855905219864052Rat
1305778Sgms2sphingomyelin synthase 22219889809219967704Rat
11404996LOC108350108uncharacterized LOC1083501082219916828219934897Rat
41260335LOC120100944uncharacterized LOC1201009442219976241219979672Rat
41156518Pbdc1-ps2polysaccharide biosynthesis domain containing 1, pseudogene 22220020063220022513Rat
1308081Papss13'-phosphoadenosine 5'-phosphosulfate synthase 12220040343220114399Rat
40994666Rnvu1-6RNA, variant U1 small nuclear 62220206250220206413Rat
1594188Actr10-ps1actin related protein 10, pseudogene 12220553641220554855Rat
1308639Dkk2dickkopf WNT signaling pathway inhibitor 22220568338220660225Rat
41214852Rnu6-482RNA, U6 small nuclear 4822221038075221038177Rat
7738424LOC102547683uncharacterized LOC1025476832221090549221103890Rat
1563706Gimd1GIMAP family P-loop NTPase domain containing 12221103878221138559Rat
620466Aimp1aminoacyl tRNA synthetase complex-interacting multifunctional protein 12221151907221175458Rat
1307816TbckTBC1 domain containing kinase2221175749221348058Rat
41108173LOC120101311small nucleolar RNA SNORA172221294661221294790Rat
1593709Npntnephronectin2221391151221459527Rat
1590828Meak7-ps1MTOR associated protein, eak-7 homolog, pseudogene 12221459266221464322Rat
7720012LOC102548236uncharacterized LOC1025482362221475058221499118Rat
1311822Gstcdglutathione S-transferase, C-terminal domain containing2221499732221591888Rat
1359136Ints12integrator complex subunit 122221591761221609497Rat
1311728Arhgef38Rho guanine nucleotide exchange factor 382221610212221739841Rat
7572082LOC102546359uncharacterized LOC1025463592221797737221800778Rat
1307965Ppa2inorganic pyrophosphatase 22221800791221878079Rat
1591740Gpbp1l2GC-rich promoter binding protein 1-like 22221964036221967463Rat
1311625Tet2tet methylcytosine dioxygenase 22221988645222072813Rat
41280602LOC120101230small nucleolar RNA SNORA702222110982222111103Rat
2323726Rpl10l4ribosomal protein L10 like 42222111139222111551Rat
40967376LOC120101282small nucleolar RNA SNORA172222114424222114555Rat
11437904LOC108350114glyceraldehyde-3-phosphate dehydrogenase pseudogene2222128067222141244Rat
41224173LOC120100946uncharacterized LOC1201009462222629081222668827Rat
69228Cxxc4CXXC finger protein 42222664148222689365Rat
2323572Dtwd2-ps1DTW domain containing 2, pseudogene 12222787557222789283Rat
3810Tacr3tachykinin receptor 32223266536223363791Rat
41360797LOC12010062140S ribosomal protein S26-like2223598382223598776Rat
1589432Myl12a-ps1myosin light chain 12A, pseudogene 12223610495223611007Rat
1307115Cenpecentromere protein E2223637035223695692Rat
1309898Bdh23-hydroxybutyrate dehydrogenase 22223702410223723076Rat
1598112Slc9b2solute carrier family 9 member B22223726982223761234Rat
1305087Slc9b1solute carrier family 9 member B12223769105223818359Rat
41037515LOC120101362small nucleolar RNA SNORA262223824846223824966Rat
1566242Cisd2CDGSH iron sulfur domain 22223828937223853768Rat
619912Ube2d3ubiquitin-conjugating enzyme E2D 32223868397223899606Rat
1305785Manbamannosidase beta2223910432224002988Rat
40993262LOC120101140U6 spliceosomal RNA2224015573224015679Rat
70498Nfkb1nuclear factor kappa B subunit 12224016214224132135Rat
41144425Rnu2-72RNA, U2 small nuclear 722224145615224145716Rat
1308236Slc39a8solute carrier family 39 member 82224171787224319326Rat
11462118LOC10835011660S ribosomal protein L7 pseudogene2224181434224222483Rat
1564639Bank1B-cell scaffold protein with ankyrin repeats 12224530475224800420Rat
9294131Rpl29l8ribosomal protein L29 like 82224815128224815436Rat
3382Ppp3caprotein phosphatase 3 catalytic subunit alpha2225165981225440978Rat
1588169Pacsin3-ps1protein kinase C and casein kinase substrate in neurons 3, pseudogene 12225474055225475975Rat
40939843LOC120100622uncharacterized LOC1201006222225885497225888436Rat
1303218Emcnendomucin2225891100225970932Rat
41011800LOC120100949uncharacterized LOC1201009492226057178226074795Rat
2322961Ddit4lDNA-damage-inducible transcript 4-like2226128273226131044Rat
11496584LOC108350121uncharacterized LOC1083501212226205496226207736Rat
11399629LOC108350122uncharacterized LOC1083501222226302496226318543Rat
7562111Rpl17-ps6ribosomal protein L17, pseudogene 62226326906226327481Rat
621464H2az1H2A.Z variant histone 12226355668226357984Rat
1591949Dnajb14DnaJ heat shock protein family (Hsp40) member B142226358988226409461Rat
1307133Lamtor3late endosomal/lysosomal adaptor, MAPK and MTOR activator 32226411389226423612Rat
1310189Dapp1dual adaptor of phosphotyrosine and 3-phosphoinositides 12226425890226475445Rat
41077741LOC120100950uncharacterized LOC1201009502226438865226442299Rat
41162421LOC120100951uncharacterized LOC1201009512226480844226485594Rat
1590827Nlk-ps1nemo like kinase, pseudogene 12226517676226519713Rat
1591948Mindy3-ps1MINDY lysine 48 deubiquitinase 3, pseudogene 12226521817226527142Rat
7750470LOC102555623uncharacterized LOC1025556232226558532226578601Rat
7695964C2h4orf54similar to human chromosome 4 open reading frame 542226580582226599354Rat
1308388Mttpmicrosomal triglyceride transfer protein2226613090226654239Rat
1594565Trmt10atRNA methyltransferase 10A2226669445226684166Rat
1309170C2h4orf17similar to human chromosome 4 open reading frame 172226693808226722277Rat
1584721Metap2-ps4methionyl aminopeptidase 2, pseudogene 42226738713226740586Rat
621638Adh7alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide2226748724226763183Rat
2044Adh1calcohol dehydrogenase 1C (class I), gamma polypeptide2226797303226808892Rat
1310029Adh6aalcohol dehydrogenase 6A (class V)2226823775226846005Rat
1595864Adh1-ps1alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 12226862836226881171Rat
11424141LOC108350123uncharacterized LOC1083501232226879275226881249Rat
1306313Adh6alcohol dehydrogenase 6 (class V)2226903208226934564Rat
71028Adh4alcohol dehydrogenase 4 (class II), pi polypeptide2226948717226966747Rat
2292706Adh5alcohol dehydrogenase 5 (class III), chi polypeptide2226975184226987591Rat
1305545Metap1methionyl aminopeptidase 12226991305227024360Rat
7699806LOC102556448uncharacterized LOC1025564482227046507227052126Rat
69647Eif4eeukaryotic translation initiation factor 4E2227066519227099261Rat
9685091Mir1956microRNA 19562227066526227066588Rat
7743957LOC102547266uncharacterized LOC1025472662227238591227271656Rat
1303176Tspan5tetraspanin 52227294180227469361Rat
1560590Hspa8-ps20heat shock protein family A (Hsp70) member 8, pseudogene 202227488250227490321Rat
1308558Rap1gds1Rap1 GTPase-GDP dissociation stimulator 12227500366227645213Rat
41024593LOC120100955uncharacterized LOC1201009552227530080227561990Rat
41206447Nme2-ps3NME/NM23 nucleoside diphosphate kinase 2, pseudogene 32227696512227697495Rat
41129485LOC120101272small nucleolar RNA SNORA482227718981227719125Rat
1591946Stpg2sperm-tail PG-rich repeat containing 22227764266228285664Rat
6496054Cycs-ps2cytochrome c, somatic, pseudogene 22228057525228059101Rat
41210344LOC120101136U6 spliceosomal RNA2228059072228059178Rat
41257633LOC120101162U6 spliceosomal RNA2228169721228169827Rat
1590825Rps10-ps14ribosomal protein S10, pseudogene 142228301082228301564Rat
41331959LOC120101220U7 small nuclear RNA2228491892228491955Rat
41253766LOC120101108U2 spliceosomal RNA2228566040228566192Rat
40946169Trnav-aac23transfer RNA valine (anticodon AAC) 232228767419228767489Rat
2321664Aspscr1-ps1ASPSCR1 tether for SLC2A4, UBX domain containing, pseudogene 12228792286228793721Rat
41096450LOC120100956uncharacterized LOC1201009562229528518229545145Rat
9089379LOC103691720uncharacterized LOC1036917202229741900229876749Rat
620095Pdha2pyruvate dehydrogenase E1 subunit alpha 22229872300229873848Rat
735109Unc5cunc-5 netrin receptor C2230180353230535219Rat
1595863Bmpr1bbone morphogenetic protein receptor type 1B2230538252230871077Rat
621076Pdlim5PDZ and LIM domain 52230952251231120329Rat
41040699Rpl39-ps9ribosomal protein L39, pseudogene 92231154550231158955Rat
1311040Gbp5guanylate binding protein 52231237748231257071Rat
1583235Gbp7guanylate binding protein 72231275521231297289Rat
1310579Gbp4guanylate binding protein 42231304910231318883Rat
621810Gbp2guanylate binding protein 22231332488231348573Rat
1311877Gbp1guanylate binding protein 12231398136231432773Rat
1597766Gbp3guanylate binding protein 32231460032231500266Rat
41121145LOC120101154U6 spliceosomal RNA2231513755231513861Rat
1560801Gbp1-ps1guanylate binding protein 1, pseudogene 12231517485231525865Rat
1584233Gbp6-ps2guanylate binding protein 6, pseudogene 22231643579231672818Rat
1359262Kyat3kynurenine aminotransferase 32231701881231747462Rat
11361756LOC108350125uncharacterized LOC1083501252231759164231767187Rat
619735Gtf2bgeneral transcription factor IIB2231767317231785626Rat
41219769Rnu6-503RNA, U6 small nuclear 5032231776535231776641Rat
620146Pkn2protein kinase N22231793584231898953Rat
7740925LOC102546591uncharacterized LOC1025465912231915170231944275Rat
41182245LOC120100957uncharacterized LOC1201009572231978621231987035Rat
11452044LOC108350126uncharacterized LOC1083501262232084651232087782Rat
41097702LOC120100959uncharacterized LOC1201009592232435038232454741Rat
41187575LOC120100958uncharacterized LOC1201009582232439706232462245Rat
7633711LOC102546938uncharacterized LOC1025469382232552428232604876Rat
41208624LOC120100960uncharacterized LOC1201009602233102614233153460Rat
41287178LOC120100961uncharacterized LOC1201009612233138097233143134Rat
1305670Lmo4LIM domain only 42233264180233280881Rat
11484619LOC108350128uncharacterized LOC1083501282233470949233477899Rat
7597955LOC102549483uncharacterized LOC1025494832233490907233505798Rat
1305366Hs2st1heparan sulfate 2-O-sulfotransferase 12233508018233641769Rat
621291Selenofselenoprotein F2233642075233674853Rat
41169203LOC120100962uncharacterized LOC1201009622233642432233645492Rat
40954943LOC120100963uncharacterized LOC1201009632233732380233740609Rat
1304859Sh3glb1SH3 domain -containing GRB2-like endophilin B12233750838233784817Rat
621100Clca5chloride channel accessory 52233796569233818867Rat
1591945Clca4lchloride channel calcium activated 4-like2233826133233846137Rat
7715322LOC102549543uncharacterized LOC1025495432233826602233865540Rat
1303234Clca4chloride channel accessory 42233883625233904993Rat
1306258Clca1chloride channel accessory 12233938677233964369Rat
1304894Clca2chloride channel accessory 22233993619234022691Rat
1593831Odf2louter dense fiber of sperm tails 2-like2234036049234072751Rat
1565539Col24a1collagen type XXIV alpha 1 chain2234212256234469445Rat
1308723Znhit6zinc finger, HIT-type containing 62234486686234517952Rat
41217598LOC120101145U6 spliceosomal RNA2234500049234500155Rat
620763Ccn1cellular communication network factor 12234562410234565370Rat
7709092LOC102553018uncharacterized LOC1025530182234565400234641070Rat
70968Ddah1dimethylarginine dimethylaminohydrolase 12234667499234800322Rat
40962343LOC120100964uncharacterized LOC1201009642234780480234783439Rat
620544Bcl10BCL10, immune signaling adaptor2234840880234850520Rat
1560065C2h1orf52similar to human chromosome 1 open reading frame 522234853378234860045Rat
41195544Rnu5e-5RNA, U5E small nuclear 52234864277234864392Rat
1564206Syde2synapse defective Rho GTPase homolog 22234897975234930994Rat
1563105Dnai3dynein axonemal intermediate chain 32234947910235006173Rat
1308420Mcoln3mucolipin TRP cation channel 32235008716235042885Rat
1308884Mcoln2mucolipin TRP cation channel 22235053816235102703Rat
620565Lpar3lysophosphatidic acid receptor 32235125234235193916Rat
41114961Rnu6-777RNA, U6 small nuclear 7772235281040235281138Rat
708490Ssx2ipSSX family member 2 interacting protein2235298012235330750Rat
621338Ctbschitobiase2235340520235355091Rat
1359500Spata1spermatogenesis associated 12235349126235394578Rat
620807Gng5G protein subunit gamma 52235394680235403177Rat
1559755Rpf1ribosome production factor 12235403020235417546Rat
70901Dnase2bdeoxyribonuclease 2 beta2235470915235515211Rat
621369Uoxurate oxidase2235486867235523053Rat
708544Samd13sterile alpha motif domain containing 132235534699235540527Rat
41364636LOC120100965uncharacterized LOC1201009652235540646235542542Rat
40988647LOC120100966uncharacterized LOC1201009662235554316235556702Rat
1310574Prkacbprotein kinase cAMP-activated catalytic subunit beta2235636878235726928Rat
1566117Ttll7tubulin tyrosine ligase like 72235765786235889047Rat
11471726LOC108350293uncharacterized LOC1083502932236209335236213311Rat
40936735LOC120100967uncharacterized LOC1201009672236345988236352811Rat
41063911LOC120100969uncharacterized LOC1201009692236842537236851959Rat
41330340LOC120100968uncharacterized LOC1201009682236847492236881086Rat
2320955Esd-ps1esterase D, pseudogene 12237054176237055006Rat
41340482LOC120101330small nucleolar RNA SNORA172237234034237234163Rat
620835Adgrl2adhesion G protein-coupled receptor L22237696055238327141Rat
41141506LOC120101103uncharacterized LOC1201011032237751769237771224Rat
7705196LOC102547720uncharacterized LOC1025477202237932068237940538Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34401D2Mgh221102237938229237938339Ratregion
34495D2Mgh291322218414747218414891Ratregion
11478D2Mgh131342235500980235501121Ratregion
36081D2Rat2941472227146480227146641Ratregion
36173D10Rat231572215377404215377559Ratregion
37552D2Rat1851712229059610229059787Ratregion
36962D2Rat631232222436573222436696Ratregion
37796D2Rat1032352231871034231871243Ratregion
36574D2Rat681772235328134235328311Ratregion
36705D2Rat1511252231745742231745867Ratregion
34785D2Rat651562226102309226102471Ratregion
34864D2Rat671712234244455234244620Ratregion
34906D2Rat2461252227573870227573998Ratregion
35064D2Rat641812223265204223265385Ratregion
35100D2Rat851592232448220232448379Ratregion
35755D2Rat661822232634286232634457Ratregion
35849D2Rat621732219753301219753474Ratregion
38054D2Rat1382332221166836221167075Ratregion
40540D2Rat2491522226814878226815018Ratregion
38554D2Rat1122042232374126232374340Ratregion
38852D2Rat1652492221035642221035911Ratregion
38942D2Rat1562072219003602219003804Ratregion
39118D2Rat1391382223490383223490532Ratregion
39240D2Rat922002226936119226936289Ratregion
39526D2Rat2962002230469531230469773Ratregion
41462D2Rat2451252224813322224813458Ratregion
42622D2Rat3602182215641574215641788Ratregion
42623D2Rat2911822216155848216156021Ratregion
42624D2Rat3611432219363866219364017Ratregion
42625D2Rat3622472221122010221122274Ratregion
42626D2Rat3902132217480645217480845Ratregion
42627D2Rat2922482221122010221122275Ratregion
42628D2Rat2931412224786940224787090Ratregion
42629D2Rat2952182230963738230963986Ratregion
42630D2Rat3641122227573883227573998Ratregion
41066D2Rat2471632226277159226277316Ratregion
43309D2Got1681882233624675233624865Ratregion
43591D2Got1942872222842003222842288Ratregion
43594D2Got1512222216688335216688557Ratregion
43595D2Got1931132215707839215707952Ratregion
43596D2Got1541322218214633218214765Ratregion
43599D2Got1502732217254731217255004Ratregion
43600D2Got1482232216633522216633745Ratregion
43603D2Got1531442215983410215983554Ratregion
43606D2Got1632132233098929233099142Ratregion
60317D2Got2001502237431821237431971Ratregion
60296D2Got1582222231473370231473592Ratregion
60297D2Got1591392227666267227666406Ratregion
60299D2Got1612242230784226230784458Ratregion
60300D2Got1622282228270443228270671Ratregion
60301D2Got1651972233226815233227012Ratregion
60302D2Got1662762234670004234670280Ratregion
60306D2Got1721802237787974237788154Ratregion
60307D2Got1731382237776484237776622Ratregion
60308D2Got1741482236868236236868384Ratregion
60310D2Got1761762237431784237431960Ratregion
66474D2Uia122152220360923220361140Ratregion
66531D2Mco51122223024296223024402Ratregion
1630255D2Got3551572220302444220302596Ratregion
1630931D2Got3872972226369038226369335Ratregion
1630989D2Got3622212227059234227059455Ratregion
1630991D2Got3721112236901902236902013Ratregion
1631332D2Got4032392215894624215894860Ratregion
1628117D2Got3591662224160255224160421Ratregion
1628308D2Wox672402217853183217853423Ratregion
1629030D2Got3601322224430206224430339Ratregion
1630017D2Got4021932226895574226895771Ratregion
1639367D2Ulb152892218904568218904859Ratregion
1639714D2Got3572722224792464224792736Ratregion
1641596D2Mco501302224097958224098088Ratregion
1632674D2Got3672072220130961220131168Ratregion
1633066D2Got4112022226263171226263369Ratregion
1633398D2Ulb141712218904568218904741Ratregion
1640426D2Got4282962222280947222281238Ratregion
1640446D2Got4182752227157054227157329Ratregion
1635199D2Got3581422223887815223887957Ratregion
1635371D2Got3611572224805112224805269Ratregion
1636228D2Got3821292226302004226302131Ratregion
1637996D2Got4051382235168279235168417Ratregion
1633684D2Got3561282220302464220302592Ratregion
1633772D2Got413992237282013237282107Ratregion
7205980MARC_8975-8976:1025019065:38272230560856230561683Ratregion
7206044Tet21032222000938222001041Ratregion
7364904rs10746442802217906389217906389Ratregion
7364907rs1345378602215613858215613858Ratregion
8693312rs1054953062221136523221136523Ratregion
8693316rs1057769942217139753217139753Ratregion
5038618BE1991611002233996311233996411Ratregion
5038786RH1273322162233753013233753229Ratregion
5038790RH1273342042226423312226423516Ratregion
5038792RH1273352052233674367233674572Ratregion
5036135D10Bir123342219564514219564848Ratregion
7206740ksks4431592226357085226357512Ratregion
5039230RH1275871812226426058226426239Ratregion
5036605AU0485752452233464376233464619Ratregion
5036885AU0495122532231483912231484165Ratregion
5035524UOX1062235501372235501478Ratregion
5035598SHGC-672551062225438449225438555Ratregion
5035659D5S19813222236556220236556542Ratregion
5033847RH1403391432218563243218563384Ratregion
5025952RH1303291872226992561226992748Ratregion
5031462AU0482441272235544197235544324Ratregion
5034013RH1410271802225972027225972207Ratregion
5034019RH1410492202218562765218562985Ratregion
5034055RH1411921982235372609235372807Ratregion
5034169RH1416312112235330075235330286Ratregion
5026130RH1310271992215997862215998061Ratregion
5031682AU0475011042237282007237282111Ratregion
5034327AI5018542062224318762224318968Ratregion
5026318RH1317512112233826314233826525Ratregion
5031752AU0472691862235224639235224825Ratregion
5034478BF415569992225329115225329214Ratregion
5026516RH1325122202221590735221590955Ratregion
5034636BF3905141552215430667215430822Ratregion
5032117RH944481272226804370226804497Ratregion
5032117RH944481272226925460226925587Ratregion
5026826RH1336791812218362369218362550Ratregion
5027257AW491075932215378422215378515Ratregion
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5032817RH1354112112215861970215862181Ratregion
5030069BI2920691742231468124231468298Ratregion
5030129BI2929911672232513351232513518Ratregion
5032957RH1371001612225970767225970928Ratregion
5024980BB448270862231794764231794850Ratregion
5025182RH1273312132226808361226808574Ratregion
5025256RH1276171892216276952216277141Ratregion
502788722.MMHAP18FLH1.seq1532216596777216596931Ratregion
5033203RH1379621282227346410227346538Ratregion
5033335RH1384571302234569450234569580Ratregion
5027993J054791652225438482225438647Ratregion
5030629AI5007512012215777572215777773Ratregion
5030641BE1139111722235349163235349335Ratregion
5025484RH1285001872218174330218174517Ratregion
5025484RH1285001872218174330218174517Ratregion
5028089X586361642219778709219778873Ratregion
5028093X614341642235639593235639757Ratregion
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5028238D3Mit851572234862727234862884Ratregion
5030935BF3995452112221367006221367217Ratregion
5033757RH1400091952224530943224531138Ratregion
5033761RH1400231812227500517227500698Ratregion
5033809RH1402012192223862708223862927Ratregion
5025880RH1300531592234850298234850457Ratregion
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5028426AI3856171382230541685230541823Ratregion
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5053427RH1426421002226683955226684055Ratregion
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5051801RH946662652218302670218302935Ratregion
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5055543RH1438621522219401750219401902Ratregion
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5050680RH1341961842218306543218306727Ratregion
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7193034PPP3CA3682225438480225438848Ratregion
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5050670RH1341902152222689023222689238Ratregion
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8663447rs1065472862227026844227026844Ratregion
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5039424RH1276982172219250684219250901Ratregion
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5040034RH1280522022218452422218452624Ratregion
5040282RH1281941992219862686219862886Ratregion
5043018RH1297822042224002741224002945Ratregion
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5075570RH1386702442216164169216164413Ratregion
5072378RH1368142352223862708223862943Ratregion
5074188RH1378721442233509378233509522Ratregion
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5074376RH1379812072218171996218172203Ratregion
5074376RH1379812072218171996218172203Ratregion
5076150RH1390081292234271898234272027Ratregion
5072544RH1369111522234859825234859977Ratregion
5072590RH1369371892235522789235522978Ratregion
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5079626RH1411101832218101990218102173Ratregion
5079626RH1411101832218101990218102173Ratregion
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5078770RH1405421732231747212231747385Ratregion
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5080340RH1415232102221499933221500142Ratregion
5071028RH1348451912235102484235102675Ratregion
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5071150RH1349162092218479392218480117Ratregion
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5080398RH1415561802215487784215487964Ratregion
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5071702RH1352351852233510296233510481Ratregion
5074094RH1378172182225214161225214379Ratregion
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5074868RH1382651582230533052230533210Ratregion
5061684BE1058581502227100443227100593Ratregion
5063446BI3018031732226135539226135712Ratregion
5065026BE1089471502216071611216071761Ratregion
5066832AU0481241992221603937221604136Ratregion
5066896AU0480862582224964332224964590Ratregion
5067008AU0480201272227122371227122498Ratregion
8693332rs657856262236660713236660713Ratregion
5067594AU0476511402226036966226037106Ratregion
5068018AU0473982262232001765232001798Ratregion
5068410AU0471621292226809805226809929Ratregion
5068470AU0471261802235224645235224825Ratregion
5068608AU0470431152237604546237604661Ratregion
5068232AU0472702402235224585235224825Ratregion
5070350AI5073821162231795904231796020Ratregion
5060118BF3885121652234524157234524322Ratregion
5060670BE0988371802235375960235376140Ratregion
5065486BF4122611282219531162219531290Ratregion
5061016BF3897141292231779971231780100Ratregion
5062522BF4033561042235345227235345331Ratregion
5063754AW5350781502227561760227561910Ratregion
5065232AA9968312152231795477231795692Ratregion
5065496BE1091071542234469227234469381Ratregion
5064282BE1209791652218476389218476554Ratregion
5064394BF3991981682225443476225443644Ratregion
5066070BE1167081762223887351223887527Ratregion
5061180BE1111461962217819206217819402Ratregion
5064550BE1081111832226987811226987994Ratregion
5064616BF3994501632215860407215860570Ratregion
5064832AA9239282042231348293231348492Ratregion
5064888BF4118091292235294014235294143Ratregion
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5066474AU0483352652228082115228082380Ratregion
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5084102AI4083862292234930561234930790Ratregion
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5087380BQ1954321712227061871227062042Ratregion
5082635BE1198881952225421869225422064Ratregion
5086431BE1150461572226580902226581486Ratregion
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5089153AU0489861072216236922216236955Ratregion
5089153AU0489861072227156041227156073Ratregion
5083285BF417257932235702694235702787Ratregion
5088036Papss12152220113737220113952Ratregion
5088313AU0484951762236562580236562758Ratregion
5084630AI1699891652235503586235504335Ratregion
5084638AA852022922234873011234873103Ratregion
5090113AU049557992220610890220610991Ratregion
5084404AI100898902235543027235543117Ratregion
5087157BQ2091151812223931408223931589Ratregion
5084794AI2358022002226405932226406132Ratregion
5084826AI178777932235354528235354621Ratregion
5085002AI1719911732231257295231257468Ratregion
5085353BQ1959501882219813422219813610Ratregion
5085489BM3831451862217678377217678561Ratregion
5090421AU0497401432230203710230203853Ratregion
5088709AU0487301982217868637217868835Ratregion
5081220RH1420341822234523039234523221Ratregion
5082473BF4160752162225322033225322249Ratregion
5086072AW5287481662231791898231792062Ratregion
5084466AI0137351402235043282235043422Ratregion
5084574AI0139441232223715445223715568Ratregion
5085202BE0964081612219853715219853874Ratregion
5085732AI2330031522226808694226808846Ratregion
5503208ha203011982236168576236169774Ratregion
5503418G338601642221607444221607608Ratregion
5503764UniSTS:470670732216094019216094092Ratregion
5504155D17Jcs979502219458773219459723Ratregion
5504468PMC213488P11032224053636224053739Ratregion
5505320Unc5c4232230534393230534816Ratregion
5506123UniSTS:498418742219893918219893992Ratregion
5506751G451521442228769406228769552Ratregion
5506839G464082182220077542220077760Ratregion
5506563PITX2_3808572217736443217737300Ratregion
5500198SHGC-15234702216216319216216437Ratregion
5500198SHGC-15234702216216337216216437Ratregion
5503001Prkacb802235655423235656709Ratregion
5500671RH1366051642231785304231785468Ratregion
5503370RW22082229872928229873136Ratregion
5503841Dkk21062220569176220569282Ratregion
5501059PMC133668P24022235149301235149703Ratregion
5501536RH694315912219760126219760717Ratregion
5501810MARC_13861-13862:1007063395:13832237696303237696686Ratregion
5501952MARC_20744-20745:1025020999:102218568023218569252Ratregion
5502092MARC_31601-31602:1045759847:13712226357039226357678Ratregion
5502707PPP3CA1112225380592225380703Ratregion
10755485rs645129622228801039228801039Ratregion
Position Markers

Flank 1: (D10Rat23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,377,404 - 215,377,559 (+)MAPPER
Rnor_6.02231,224,020 - 231,224,174NCBI
Rnor_5.02250,573,351 - 250,573,505UniSTS
RGSC_v3.42224,179,989 - 224,180,143UniSTS
RGSC_v3.42224,179,988 - 224,180,143RGD
RGSC_v3.12224,166,668 - 224,166,823RGD
Celera2207,699,223 - 207,699,377UniSTS
RH 3.4 Map21546.5UniSTS
RH 3.4 Map21546.5RGD
RH 2.0 Map21135.7RGD
Flank 2: (D2Mgh22)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22237,938,229 - 237,938,339 (+)MAPPER
Rnor_6.02254,132,315 - 254,132,424NCBI
Rnor_5.02272,824,538 - 272,824,647UniSTS
RGSC_v3.42247,305,964 - 247,306,073UniSTS
RGSC_v3.42247,305,963 - 247,306,073RGD
RGSC_v3.12247,320,570 - 247,320,680RGD
Celera2229,889,633 - 229,889,742UniSTS
Cytogenetic Map2q45UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2206665645219003804Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2299161Iddm33Insulin dependent diabetes mellitus QTL 332.98blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2206312063220876787Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2221136523241305619Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general lineage: 2 seperate F2 intercrosses were generated one from grandmaternal GK and grandpaternal F344 other from grandmaternal F344 and grandpaternal GK 2312767
qtl_general number of animals used: 98 females 2312767
qtl_general measurement method: in the last 3 months modified fat-enriched chow was given; animals were killed at 215 days of age; cortical diaphyseal bone was measured and meta total vBMD (g/cm3) determined by pQCT (peripheral quantitative computed tomography) 2312767
qtl_general software used:one-way ANOVA and MAP MANAGER/QTX 2312767
qtl_general according to the table and the figure D10Rat23 maps to chr 2 2312767