Bw94 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw94 (Body weight QTL 94) Rattus norvegicus

Symbol: Bw94
Name: Body weight QTL 94
RGD ID: 2312670
Previously known as: Q3MS2
Trait: inguinal fat pad mass   (VT:0010424)    
Measurement Type: inguinal fat pad weight to body weight ratio   (CMO:0001253)    
LOD Score: Not Available
P Value: 0.01
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2398,535,255 - 168,026,850RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.03103,141,814 - 176,418,101RGD_MAPPER_PIPELINERnor6.0
Rnor_5.03109,733,850 - 180,128,021RGDRnor5.0
RGSC_v3.4397,523,869 - 170,016,653RGDRGSC3.4
Cross Type: intercross
Strains Crossed: DA.WOKW-(D3Mgh5-D3Rat1)/K 



Candidate Gene Status
Ghrh is a candidate Gene for Bw94
Ptpn1 is a candidate Gene for Bw94

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Genes on rat chromosomes 3, 5, 10, and 16 are linked with facets of metabolic syndrome. Baguhl R, etal., Obesity (Silver Spring). 2009 Jun;17(6):1215-9. Epub 2009 Feb 19.
Related QTLs

Related QTL Description Reference
Mlepq1_m maps to syntenic region RGD:2312642
Slep7 maps to same region RGD:2312642
Scl63 maps to same region RGD:2312642
BW17_H maps to syntenic region RGD:2312642


Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D3Mgh5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2398,535,255 - 98,535,386 (+)MAPPER
Rnor_6.03103,141,814 - 103,141,944NCBI
Rnor_5.03109,733,850 - 109,733,980UniSTS
RGSC_v3.4397,523,870 - 97,524,000UniSTS
RGSC_v3.4397,523,869 - 97,524,000RGD
Celera397,537,491 - 97,537,621UniSTS
RGSC_v3.1397,420,298 - 97,420,428RGD
RH 3.4 Map3781.29RGD
RH 3.4 Map3781.29UniSTS
Cytogenetic Map3q34UniSTS
Flank 2: (D3Rat1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,026,691 - 168,026,850 (+)MAPPER
Rnor_6.03176,417,943 - 176,418,101NCBI
Rnor_5.03180,127,863 - 180,128,021UniSTS
RGSC_v3.43170,016,252 - 170,016,653RGD
RGSC_v3.43170,016,309 - 170,016,467UniSTS
Celera3164,558,222 - 164,558,366UniSTS
RGSC_v3.13169,922,345 - 169,922,503RGD
RH 3.4 Map31533.2RGD
RH 3.4 Map31533.2UniSTS
RH 2.0 Map31027.1RGD
SHRSP x BN Map391.5299RGD
FHH x ACI Map3104.89RGD
Cytogenetic Map3q43UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general these have significantly high adipose index as compared to DA/K 2312642
qtl_general software used: ANOVA then Bonferroni's comparison test 2312642
qtl_general number of animals used: 12 males and 12 females 2312642
qtl_general measurement method: 30 weeks old animals were killed and body weight was taken; left and right inguinal adipose pads were taken out and weighed 2312642
qtl_map this region is syntenic to human chr 20q13.1 which is associated to diabetes and obesity 2312642