Pur18 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Pur18 (Proteinuria QTL 18) Rattus norvegicus

Symbol: Pur18
Name: Proteinuria QTL 18
RGD ID: 2312562
Previously known as: protenuria at day 0; Prot day 0
Trait: urine total protein amount   (VT:0000032)    
Measurement Type: urine total protein excretion rate   (CMO:0000756)    
LOD Score: 2.6
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr856,922,282 - 37,468,560RGD_MAPPER_PIPELINE
mRatBN7.252,138,965 - 32,656,739RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.051,525,098 - 33,001,026RGD_MAPPER_PIPELINERnor6.0
Rnor_5.051,521,341 - 29,109,277RGDRnor5.0
RGSC_v3.451,220,773 - 24,978,263RGDRGSC3.4
Cross Type: backcross
Strains Crossed: LEW/Maas LEW/Mol 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
antibody  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
LEW/Maas  (IEA)
LEW/Mol  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic predisposition for glomerulonephritis-induced glomerulosclerosis in rats is linked to chromosome 1. Ijpelaar DH, etal., Physiol Genomics. 2008 Oct 8;35(2):173-81. Epub 2008 Aug 5.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41356977LOC120103323small nucleolar RNA SNORA17521594732159603Rat
2322123Tmem251-ps1Transmembrane protein 251, pseudogene 1523423672342941Rat
1563586Rps4x-ps8ribosomal protein S4, X-linked, pseudogene 8523498632350756Rat
1585970Acbd5-ps2acyl-CoA binding domain containing 5, pseudogene 2523507182462194Rat
1302993Ly96lymphocyte antigen 96525822332612357Rat
1566224Tmem70transmembrane protein 70526371022654729Rat
2320348Idi1-ps1isopentenyl-diphosphate delta isomerase 1, pseudogene 1526561612657460Rat
620658Elocelongin C526615272677893Rat
6503620Ube2wubiquitin-conjugating enzyme E2W526907422754491Rat
621479Stau2staufen double-stranded RNA binding protein 2528407413084935Rat
7641998LOC102555040uncharacterized LOC102555040531205153149122Rat
727793Rdh10retinol dehydrogenase 10531866713215572Rat
735169Rpl7ribosomal protein L7532171843220192Rat
6487565C5h8orf89similar to human chromosome 8 open reading frame 89532255863247575Rat
1359575LOC297756ribosomal protein S8-like533928463393523Rat
1559717Sbsponsomatomedin B and thrombospondin, type 1 domain containing534027633433338Rat
1311574Terf1telomeric repeat binding factor 1534431033472377Rat
2320313Ergic2-ps2ERGIC and golgi 2, pseudogene 2534774413478415Rat
41244691LOC120103307small nucleolar RNA SNORA17535408223540951Rat
621349Kcnb2potassium voltage-gated channel subfamily B member 2535670124028564Rat
40956976LOC120103364U2 spliceosomal RNA536612473661373Rat
7567361LOC102555640uncharacterized LOC102555640542246724238926Rat
1564405Nufip2-ps1nuclear FMR1 interacting protein 2, pseudogene 1542710524273239Rat
41271882LOC120103310small nucleolar RNA SNORA17542817024281825Rat
1303284Trpa1transient receptor potential cation channel, subfamily A, member 1543798624434133Rat
7696412LOC102555885uncharacterized LOC102555885545287604547276Rat
1305496Mscmusculin545473354553206Rat
1584850Ndufb4-ps8NADH:ubiquinone oxidoreductase subunit B4, pseudogene 8547967974797193Rat
1584849Eya1EYA transcriptional coactivator and phosphatase 1548635015101483Rat
41204020LOC120102805uncharacterized LOC120102805550600945159282Rat
41046558LOC120102806uncharacterized LOC120102806553188005323393Rat
1584867Phb1-ps14prohibitin 1, pseudogene 14553298535331546Rat
40928183LOC120102807uncharacterized LOC120102807554355395438349Rat
1310557Rbpjl2recombination signal binding protein for immunoglobulin kappa J region-like 2554649695466367Rat
1359260Xkr9XK related 9555303845562168Rat
1307876Lactb2lactamase, beta 2555690805591843Rat
41087792LOC120102808uncharacterized LOC120102808555815695621082Rat
1359100Tram1translocation associated membrane protein 1556425795667666Rat
7520808LOC102548182uncharacterized LOC102548182556719475680129Rat
41205794Trnaa-agc87transfer RNA alanine (anticodon AGC) 87556893565689436Rat
41377667Ptmal6prothymosin alpha like 6557646715765429Rat
41210398LOC120103350small nucleolar RNA SNORA40558334695833590Rat
620108Ncoa2nuclear receptor coactivator 2558356426069693Rat
7488972Mir378bmicroRNA 378b559467235946806Rat
2319590Prdm14PR/SET domain 14560821636092712Rat
41152372LOC120103198U6 spliceosomal RNA562025226202625Rat
1307132Slco5a1solute carrier organic anion transporter family, member 5A1562289386358124Rat
708554Sulf1sulfatase 1563628946526174Rat
41380053LOC120102810uncharacterized LOC120102810564548746457731Rat
7674456Atp6v1e1-ps1ATPase H+ transporting V1 subunit E1, pseudogene 1564864146488878Rat
7734898LOC102548247uncharacterized LOC102548247565406136545453Rat
2319513Txn2-ps1thioredoxin 2, pseudogene 1565529356558546Rat
41092419LOC120103370U4 spliceosomal RNA565781096578255Rat
11425397LOC108351116uncharacterized LOC108351116567352806753952Rat
1591765Tuba1b-ps1tubulin, alpha 1B, pseudogene 1570293207030910Rat
1591751Ybx1-ps1Y box binding protein 1, pseudogene 1570336337035171Rat
41129079LOC120103277small nucleolar RNA SNORA2/SNORA34 family571110097111144Rat
1564053C5h8orf34similar to human chromosome 8 open reading frame 34572379687777119Rat
41228831LOC120103365U2 spliceosomal RNA577717537771881Rat
1307865Prex2phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2579376928253112Rat
11502483LOC108350922uncharacterized LOC108350922583808758383459Rat
11366818Rpl30-ps4ribosomal protein L30, pseudogene 4584204618420804Rat
1311764Cpa6carboxypeptidase A6585267088888492Rat
1560793Arfgef1ARF guanine nucleotide exchange factor 1589820619076326Rat
1307055Cspp1centrosome and spindle pole associated protein 1590771619192402Rat
1310301Cops5COP9 signalosome subunit 5591922339210498Rat
40943670Rnu6-1297RNA, U6 small nuclear 1297592263019226401Rat
1585679Ppp1r42protein phosphatase 1, regulatory subunit 42592271099274461Rat
1589398Tcf24transcription factor 24592746599282876Rat
1561068Mcmdc2minichromosome maintenance domain containing 2592919679337526Rat
7721328LOC102556004uncharacterized LOC102556004592960849316974Rat
41182145Snord87small nucleolar RNA, C/D box 87592974899297573Rat
620242Sgk3serum/glucocorticoid regulated kinase family, member 3593457619472243Rat
1586147Eef1g-ps4eukaryotic translation elongation factor 1 gamma, pseudogene 4594987619503171Rat
708520Vcpip1valosin containing protein interacting protein 1595342479560889Rat
1306940Mybl1MYB proto-oncogene like 1595829059618179Rat
1561849Vxnvexin596592139684684Rat
1308863Adhfe1alcohol dehydrogenase, iron containing, 1597059669732580Rat
1311403Rrs1ribosome biogenesis regulator 1 homolog597334869735119Rat
1560290Sntg1syntrophin, gamma 15998055010794666Rat
1585836Tra2a-ps3transformer 2 alpha, pseudogene 351010664210108431Rat
40974341LOC120103228U6 spliceosomal RNA51026308710263191Rat
1584848Hnrnpa1-ps5heterogeneous nuclear ribonucleoprotein A1, pseudogene 551085591210856695Rat
1585792Kif1c-ps1kinesin family member 1C, pseudogene 151090616110908936Rat
2318732Ago2-ps1argonaute RISC catalytic component 2, pseudogene 151102054911023395Rat
41091925Hnrnpa1-ps48heterogeneous nuclear ribonucleoprotein A1, pseudogene 4851143347611439810Rat
9452275LOC103692281BET1 homolog pseudogene51167072111671079Rat
41098563Pramel7-ps2preferentially expressed antigen in melanoma-like 7, pseudogene 251183103711832415Rat
1598345Got2-ps2glutamic-oxaloacetic transaminase 2, pseudogene 251221532912216562Rat
41186497LOC120102811uncharacterized LOC12010281151224979812254124Rat
1586096Pcmtd1protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 151228471112355680Rat
2318359Tiprl-ps2TOR signaling pathway regulator, pseudogene 251245487912455761Rat
6494602Rps15-ps4ribosomal protein S15, pseudogene 451245778012458197Rat
1564095Rplp2l1ribosomal protein lateral stalk subunit P2 like 151255128712552204Rat
708566St18ST18 C2H2C-type zinc finger transcription factor51258249312914221Rat
1583530Alkal1ALK and LTK ligand 151301972913049913Rat
1309346Rb1cc1RB1-inducible coiled-coil 151316164813225560Rat
41038477LOC120103270small nucleolar RNA SNORA851321464613214785Rat
7618446LOC102549737uncharacterized LOC10254973751325044113272830Rat
41008049LOC120102812uncharacterized LOC12010281251332942413361574Rat
1305917Npbwr1neuropeptides B and W receptor 151349531913498761Rat
1586095Psmd12-ps1proteasome 26S subunit, non-ATPase 12, pseudogene 151362624113708195Rat
69426Oprk1opioid receptor, kappa 151386001613877823Rat
2318103Nhp2-ps2NHP2 ribonucleoprotein, pseudogene 251392485214056332Rat
11385100LOC108350923uncharacterized LOC10835092351430730214312194Rat
1562450Atp6v1hATPase H+ transporting V1 subunit H51437902914484703Rat
1586146Rgs20regulator of G-protein signaling 2051448443614614317Rat
41108305Hspd1-ps36heat shock protein family D (Hsp60) member 1, pseudogene 3651449799614499931Rat
1309880Tcea1transcription elongation factor A151463145414668769Rat
3025Lypla1lysophospholipase 151467960514708774Rat
1304796Mrpl15mitochondrial ribosomal protein L1551472996114741276Rat
7637993LOC102552817uncharacterized LOC10255281751497160815016234Rat
41121936LOC120102814uncharacterized LOC12010281451497213414983916Rat
1305371Sox17SRY-box transcription factor 1751501666015022228Rat
1595256Sumo4small ubiquitin-like modifier 451509932015100304Rat
1596713Rp1RP1, axonemal microtubule associated51512110415582363Rat
1565647Cyld-ps1CYLD lysine 63 deubiquitinase, pseudogene 151520207415205290Rat
41001063LOC120103384U6 spliceosomal RNA51537542215375528Rat
1549780Xkr4XK related 451589681816297733Rat
9323738LOC103695237uncharacterized LOC10369523751619288716195997Rat
41395404LOC120103059uncharacterized LOC12010305951628400116429252Rat
1309006Tmem68transmembrane protein 6851649405416524842Rat
1309953Tgs1trimethylguanosine synthase 151652486416558399Rat
1564981Scp2-ps1sterol carrier protein 2, pseudogene 151660859516609025Rat
621017LynLYN proto-oncogene, Src family tyrosine kinase51663951216755501Rat
621037Rps20ribosomal protein S2051681909516820476Rat
41164745Snord54small nucleolar RNA, C/D box 5451681994516820012Rat
41390808LOC120103319small nucleolar RNA SNORA1751684576216845890Rat
3103MosMOS proto-oncogene, serine/threonine kinase51685995716861264Rat
1597763Dnajb6-ps2DnaJ heat shock protein family (Hsp40) member B6, pseudogene 251687884816879742Rat
2321393Rpl19l4ribosomal protein L19 like 451688089916898782Rat
1305286Plag1PLAG1 zinc finger51690205716956727Rat
1592689Chchd7coiled-coil-helix-coiled-coil-helix domain containing 751695712716961682Rat
1565999Sdr16c5short chain dehydrogenase/reductase family 16C, member 551701881317043974Rat
1562060Sdr16c6short chain dehydrogenase/reductase family 16C, member 651709520817118713Rat
68946Penkproenkephalin51718379917189160Rat
6486737LOC100912510uncharacterized LOC10091251051719041417192458Rat
1563405Ptp4a2l1protein tyrosine phosphatase 4A2 like 151753051717532146Rat
41025792LOC120102816uncharacterized LOC12010281651769069117736386Rat
41052978LOC120103297small nucleolar RNA SNORA1751773591417736044Rat
1306455Bpnt23'(2'), 5'-bisphosphate nucleotidase 251777568417802570Rat
1596418Zfp652-ps1zinc finger protein 652, pseudogene 151787251017899024Rat
11453663LOC108350924uncharacterized LOC10835092451804101118060823Rat
9196141Son-ps1SON DNA and RNA binding protein, pseudogene 151846947618473456Rat
6502160Ppid-ps3peptidylprolyl isomerase D, pseudogene 351852878218540240Rat
41077767LOC120103251small nucleolar RNA SNORD7351869202518692080Rat
41384122Srsf3-ps3serine and arginine rich splicing factor 3, pseudogene 351873441318734925Rat
1563403Fam110bfamily with sequence similarity 110, member B51878936218929647Rat
40939148LOC120103320small nucleolar RNA SNORA1751883011718830241Rat
6501591Rack1-ps1receptor for activated C kinase 1, pseudogene 151898710018990913Rat
1565372Ube2cl1ubiquitin-conjugating enzyme E2C like 151899814819001967Rat
2321512Ap4s1-ps1adaptor related protein complex 4 subunit sigma 1, pseudogene 151908004319081080Rat
1308557Ubxn2bUBX domain protein 2B51930363419333181Rat
2482Cyp7a1cytochrome P450 family 7 subfamily A member 151937697919386676Rat
7640679LOC102549899uncharacterized LOC10254989951943565319454889Rat
621497Sdcbpsyndecan binding protein51947349919517188Rat
727868Nsmafneutral sphingomyelinase activation associated factor51951779519578773Rat
41347757G3bp1-ps2G3BP stress granule assembly factor 1, pseudogene 251973493319737218Rat
41046326LOC120103295small nucleolar RNA SNORA1751981437419814505Rat
1310455Toxthymocyte selection-associated high mobility group box51987499420171272Rat
41359748LOC120103345small nucleolar RNA SNORA1752095404020954161Rat
1560994Eif1-ps8eukaryotic translation initiation factor 1, pseudogene 852109854621099214Rat
1304709Car8carbonic anhydrase 852130294021402395Rat
1563301Rps16-ps4ribosomal protein S16, pseudogene 452152477121525259Rat
11375408LOC108350928uncharacterized LOC10835092852157041721574912Rat
7526543LOC102551006uncharacterized LOC10255100652158814221628171Rat
41142696LOC120103375U4 spliceosomal RNA52160213121602278Rat
68323Rab2aRAB2A, member RAS oncogene family52167601721740035Rat
1311921Chd7chromodomain helicase DNA binding protein 752181200721995358Rat
11374185LOC108350929uncharacterized LOC10835092952190195421930923Rat
7729019LOC102552020uncharacterized LOC10255202052204894322052627Rat
1586092LOC366310pseudogene for small nuclear RNA U3 (H3.9)52206501822065142Rat
11517987LOC10835108140S ribosomal protein S18 pseudogene52206558922074840Rat
2324828Psmd1-ps1proteasome 26S subunit, non-ATPase 1, pseudogene 152208005922092892Rat
9685089Lnc056long non-coding RNA 05652216267422163117Rat
11449903LOC108350931uncharacterized LOC10835093152222723222235944Rat
41350556LOC120103214U6 spliceosomal RNA52234882522348930Rat
41281883LOC120102821uncharacterized LOC12010282152237056722384103Rat
1564200Clvs1clavesin 152240838422604281Rat
1312000Asphaspartate-beta-hydroxylase52260158122814107Rat
41020171LOC120102822uncharacterized LOC12010282252265484222679142Rat
41055096LOC120102823uncharacterized LOC12010282352269711922704317Rat
9272632LOC103692300uncharacterized LOC10369230052291604222921564Rat
620104Gdf6growth differentiation factor 652299624623012567Rat
40938154LOC120102824uncharacterized LOC12010282452301332023022049Rat
2321121Mtrfr-ps1mitochondrial translation release factor in rescue, pseudogene 152378676823787484Rat
11400924Trnas-aga1transfer RNA serine (anticodon AGA) 152399628823996369Rat
1549749Cfap418cilia and flagella associated protein 41852399639524015609Rat
41188737LOC120102826uncharacterized LOC12010282652401469424029945Rat
41063004LOC120102825uncharacterized LOC12010282552402767024031806Rat
41081239LOC120102827uncharacterized LOC12010282752403682024043057Rat
7629665LOC102555924uncharacterized LOC10255592452406921124077248Rat
1312029Plekhf2pleckstrin homology and FYVE domain containing 252409107724106758Rat
11434367LOC108350932uncharacterized LOC10835093252410676124123754Rat
1586091Rpl11-ps4ribosomal protein L11, pseudogene 452413611524136752Rat
11503786LOC108351119ferritin light chain 1 pseudogene52414242024143026Rat
1309085Ndufaf6NADH:ubiquinone oxidoreductase complex assembly factor 652414771224171981Rat
631423Tp53inp1tumor protein p53 inducible nuclear protein 152425398624272250Rat
1307783Ccne2cyclin E252428507824298258Rat
1310592Ints8integrator complex subunit 852429554224344642Rat
1305828Dpy19l4dpy-19 like 452435128924410932Rat
1560481Esrp1epithelial splicing regulatory protein 152442761124482157Rat
6495230Rps23-ps1ribosomal protein S23, pseudogene 152451555924516265Rat
7747666Eno1-ps21enolase 1, pseudogene 2152453842024540101Rat
1588818Rpl24l2ribosomal protein L24 like 252454271424543178Rat
1564278Rnps1-ps5RNA binding protein with serine rich domain 1, pseudogene 552463041024632144Rat
9116417Dlgap5l1DLG associated protein 5 like 152467117324720087Rat
41314783St13-ps6ST13, Hsp70 interacting protein, pseudogene 652468005024684165Rat
1559441Cd99l4CD99 molecule like 452472267224769964Rat
9472653Dlg5l7discs large MAGUK scaffold protein 5 like 752480548324812407Rat
41101046LOC120102830uncharacterized LOC12010283052486926424872255Rat
41388173Wsb1-ps1WD repeat and SOCS box-containing 1, pseudogene 152488168824891528Rat
1559904Virmavir like m6A methyltransferase associated52496120825024660Rat
41020351LOC120103356U6atac minor spliceosomal RNA52500862725008726Rat
1306507Rad54bRAD54 homolog B52503211225104630Rat
7611658Fsbpfibrinogen silencer binding protein52505800325064276Rat
2320072Eif5-ps4eukaryotic translation initiation factor 5, pseudogene 452514896325152683Rat
7638920LOC102552309uncharacterized LOC10255230952515280525154273Rat
1307386GemGTP binding protein overexpressed in skeletal muscle52521430925225222Rat
619748Cdh17cadherin 1752526282025314884Rat
7731407LOC102552377uncharacterized LOC10255237752527333925289529Rat
620393Pdp1pyruvate dehydrogenase phosphatase catalytic subunit 152544684325455107Rat
1586167Tmem67transmembrane protein 6752553645825589378Rat
41100894LOC120102832RNA-binding protein 12B-A-like52559050025597273Rat
1307658Rbm12bRNA binding motif protein 12B52559740525610324Rat
1310681Cibar1CBY1 interacting BAR domain containing 152561399325632440Rat
1561260Triqktriple QxxK/R motif containing52639151126464422Rat
40972884LOC120102833uncharacterized LOC12010283352646198526467263Rat
41277993Trnat-agu10transfer RNA threonine (anticodon AGU) 1052693417726934249Rat
41195959Runx1t1lRUNX1 partner transcriptional co-repressor 1 like52716768927188550Rat
1305490Runx1t1RUNX1 partner transcriptional co-repressor 152718767427338070Rat
11398785LOC10835112060S ribosomal protein L17 pseudogene52746049327461058Rat
41114922LOC120103328small nucleolar RNA SNORA1752751011927510246Rat
11472967LOC10835112160S ribosomal protein L29 pseudogene52753782727538390Rat
41226688LOC120102835uncharacterized LOC12010283552755964727586169Rat
41209789LOC120103334small nucleolar RNA SNORA1752765310727653215Rat
1597419Dnaja1-ps2DnaJ heat shock protein family (Hsp40) member A1, pseudogene 252781036927811537Rat
1310846Slc26a7solute carrier family 26 member 752788440028021865Rat
1583733Lrrc69leucine rich repeat containing 6952802359128181963Rat
1310024Otud6bOTU deubiquitinase 6B52818199228214486Rat
1306225Pip4p2phosphatidylinositol-4,5-bisphosphate 4-phosphatase 252825982128307225Rat
6487307C5h8orf88similar to human chromosome 8 open reading frame 8852833016728355691Rat
708548Necab1N-terminal EF-hand calcium binding protein 152835785928578642Rat
11444056LOC108350937ferritin light chain 1 pseudogene52843074328431569Rat
41166424LOC120103363U2 spliceosomal RNA52849750128497630Rat
40956040Bex4-ps2brain expressed X-linked 4, pseudogene 252862147428684995Rat
1596128Tmem64transmembrane protein 6452869894728745384Rat
40941923LOC120102836uncharacterized LOC12010283652871884128768110Rat
41307010LOC120103144uncharacterized LOC12010314452903259729047722Rat
69340Calb1calbindin 152937562429402532Rat
41208256LOC120103326small nucleolar RNA SNORA1752940795329408081Rat
70999Decr12,4-dienoyl-CoA reductase 152941117229439054Rat
2318778Mrpl30-ps6mitochondrial ribosomal protein L30, pseudogene 652944778629448371Rat
621420Nbnnibrin52945957429494152Rat
1306323Osgin2oxidative stress induced growth inhibitor family member 252950040629519340Rat
41174538Tuba2l-ps1tubulin, alpha 2 like, pseudogene 152951187629518964Rat
1586088Gabpb2-ps1GA binding protein transcription factor subunit beta 2, pseudogene 152959621329605030Rat
1309167Ripk2receptor-interacting serine-threonine kinase 252963080629662804Rat
41355203LOC120102838uncharacterized LOC12010283852966282929715416Rat
1593555Cnga4-ps1cyclic nucleotide gated channel subunit alpha 4, pseudogene 152971705229718455Rat
1565988Bhmt-ps1betaine-homocysteine S-methyltransferase, pseudogene 153036296530390524Rat
2318973Ppp1cc-ps1protein phosphatase 1 catalytic subunit gamma, pseudogene 153045623330458067Rat
1593494Eif5-ps9eukaryotic translation initiation factor 5, pseudogene 953067638330677491Rat
40944019LOC120103219U6 spliceosomal RNA53105101031051115Rat
620199Mmp16matrix metallopeptidase 1653131228031556276Rat
41032391Trnap-agg53transfer RNA proline (anticodon AGG) 5353214375232143824Rat
41312846LOC120103244U7 small nuclear RNA53215196932152031Rat
1592300Cnbd1cyclic nucleotide binding domain containing 153223400332606765Rat
7556989Ormdl1-ps2ORMDL sphingolipid biosynthesis regulator 1, pseudogene 253263950232645632Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34387D5Mgh1721151452922514529436Ratregion
34469D5Mgh311952458344324583550Ratregion
34469D5Mgh311952458344324583550Ratregion
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5504928Runx1t15252733519227335244Ratregion
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5506553MMP16_92090953154693031547841Ratregion
5506735G4487015651789659617896752Ratregion
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5507313fc12d10.x11402570992757100677Ratregion
5499527stSG60954810052858531728585417Ratregion
5500170D4Mit10466152159522921595890Ratregion
5499825UniSTS:23487222352830697528307198Ratregion
5500683D19S909052476216924763167Ratregion
5501848MARC_15705-15706:1013524302:116452491660224916766Ratregion
5502431RH1248149651846945818469554Ratregion
Position Markers

Flank 1: (D5Rat116)
Rat AssemblyChrPosition (strand)Source
GRCr856,922,282 - 6,922,518 (+)Marker Load Pipeline
mRatBN7.252,138,965 - 2,139,201 (+)MAPPER
Rnor_6.051,525,098 - 1,525,333NCBI
Rnor_5.051,521,341 - 1,521,576UniSTS
RGSC_v3.451,220,773 - 1,221,009RGD
RGSC_v3.451,220,774 - 1,221,009UniSTS
RGSC_v3.151,220,773 - 1,221,009RGD
Celera51,773,867 - 1,774,102UniSTS
SHRSP x BN Map51.1599RGD
SHRSP x BN Map51.1599UniSTS
Peak: (D5Rat125)
Rat AssemblyChrPosition (strand)Source
GRCr8522,195,305 - 22,195,538 (+)Marker Load Pipeline
mRatBN7.2517,397,736 - 17,397,969 (+)MAPPER
Rnor_6.0517,262,946 - 17,263,178NCBI
Rnor_5.0522,043,678 - 22,043,910UniSTS
RGSC_v3.4517,702,961 - 17,703,194RGD
RGSC_v3.4517,702,962 - 17,703,194UniSTS
RGSC_v3.1517,702,962 - 17,703,194RGD
Celera516,740,362 - 16,740,594UniSTS
RH 3.4 Map597.5RGD
RH 3.4 Map597.5UniSTS
SHRSP x BN Map59.2199UniSTS
SHRSP x BN Map59.2199RGD
Flank 2: (D5Rat190)
Rat AssemblyChrPosition (strand)Source
Rnor_5.0529,109,097 - 29,109,277NCBI
RGSC_v3.4524,978,084 - 24,978,263RGD
RGSC_v3.1524,978,084 - 24,978,263RGD
SHRSP x BN Map515.95RGD
SHRSP x BN Map515.95UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
631551Vetf1Vascular elastic tissue fragility QTL 150.0001aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)522822265904428Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_general measurement method: animals were injected with (2mg/kg body wt) anti-Thy1.1 ER4 antibody; after 24 hrs (day 0) urine samples were collected and total protein content determined by the biuret method 2312422
qtl_general inducing agent: anti-Thy-1 glomerulonephritis (antiThy1.1 ER4G) 2312422
qtl_general number of animals used: 145 females 2312422
qtl_general software used: phenotypic distribution by Kolmogorov-Smirnov test; QTL mapping by MapMaker 2312422