Scl60 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Scl60 (Serum cholesterol level QTL 60) Rattus norvegicus

Symbol: Scl60
Name: Serum cholesterol level QTL 60
RGD ID: 2302369
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 3.13
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25143,608,201 - 161,165,651RGD_MAPPER_PIPELINE
Rnor_6.05149,568,588 - 167,739,697RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05153,255,850 - 171,364,652RGDRnor5.0
RGSC_v3.45150,236,110 - 167,844,737RGDRGSC3.4
Cross Type: intercross
Strains Crossed: WOKW/K DA/K 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/K  (IEA)
WOKW/K  (IEA)

References

References - curated
1. Kovacs P, etal., Biochem Biophys Res Commun 2000 Mar 24;269(3):660-5.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
9080107LOC103692482uncharacterized LOC1036924825149645184149649700Rat
620782Ptpruprotein tyrosine phosphatase, receptor type, U5149922374149996352Rat
7745939LOC102546750uncharacterized LOC1025467505149998023150000801Rat
3208Mecrmitochondrial trans-2-enoyl-CoA reductase5150001281150027407Rat
1561347Srsf4serine and arginine rich splicing factor 45150032999150060769Rat
1585251Tmem200btransmembrane protein 200B5150079504150082268Rat
1564762Epb41erythrocyte membrane protein band 4.15150081727150243186Rat
3233Oprd1opioid receptor, delta 15150288126150323063Rat
1311321Ythdf2YTH N(6)-methyladenosine RNA binding protein 25150364490150390173Rat
1563208Gmeb1glucocorticoid modulatory element binding protein 15150408075150449252Rat
1592841Taf12TATA-box binding protein associated factor 125150459701150476521Rat
619995Trnau1aptRNA selenocysteine 1 associated protein 15150463797150506803Rat
1593983Rab42RAB42, member RAS oncogene family5150482283150484168Rat
11469037LOC108351042uncharacterized LOC1083510425150486439150488968Rat
1592835Rcc1regulator of chromosome condensation 15150508840150531062Rat
9217808LOC103692483uncharacterized LOC1036924835150525975150530342Rat
1592823Phactr4phosphatase and actin regulator 45150533895150609423Rat
1592757Med18mediator complex subunit 185150649136150654123Rat
1566319Sesn2sestrin 25150684891150703846Rat
2181Atp5if1ATP synthase inhibitory factor subunit 15150719570150723287Rat
1306024Dnajc8DnaJ heat shock protein family (Hsp40) member C85150725674150743732Rat
9349724LOC103692484uncharacterized LOC1036924845150725777150726746Rat
4888537Mir3583microRNA 35835150732605150732694Rat
61897Ptafrplatelet-activating factor receptor5150746284150775675Rat
7539556LOC102548282uncharacterized LOC1025482825150794266150803164Rat
1309932Eya3EYA transcriptional coactivator and phosphatase 35150833754150915390Rat
1305649Xkr8XK related 85150918600150925727Rat
1307458Smpdl3bsphingomyelin phosphodiesterase, acid-like 3B5150925150150946994Rat
619714Rpa2replication protein A25150957041150967597Rat
1561016Themis2thymocyte selection associated family member 25150971795150986596Rat
1561465RGD1561465similar to RIKEN cDNA 2900010J235150994650150995029Rat
1306280Ppp1r8protein phosphatase 1, regulatory subunit 85151012035151029227Rat
620977Stx12syntaxin 125151044050151072893Rat
1305162Fam76afamily with sequence similarity 76, member A5151087962151117142Rat
11424954LOC108351145uncharacterized LOC1083511455151159812151166844Rat
621319FgrFGR proto-oncogene, Src family tyrosine kinase5151172189151199746Rat
1310031Ahdc1AT hook, DNA binding motif, containing 15151209894151277192Rat
1307299Wasf2WASP family member 25151319382151385051Rat
628686Gpr3G protein-coupled receptor 35151394118151397634Rat
2323068Cd164l2CD164 molecule like 25151397798151417690Rat
1304625Map3k6mitogen-activated protein kinase kinase kinase 65151435679151448329Rat
1310715Sytl1synaptotagmin-like 15151448639151459870Rat
1304793Tmem222transmembrane protein 2225151461961151473750Rat
1310362Wdtc1WD and tetratricopeptide repeats 15151487572151536829Rat
3718Slc9a1solute carrier family 9 member A15151573122151626360Rat
7635967LOC102548651uncharacterized LOC1025486515151651658151658481Rat
1308967Tent5bterminal nucleotidyltransferase 5B5151692068151699381Rat
1582917Trnp1TMF1-regulated nuclear protein 15151703139151709988Rat
11418099LOC108351146uncharacterized LOC1083511465151713617151716594Rat
9239968LOC103690094atherin-like5151725275151742322Rat
1303271Kdf1keratinocyte differentiation factor 15151740902151752863Rat
3215Nudcnuclear distribution C, dynein complex regulator5151754723151768104Rat
621032Nr0b2nuclear receptor subfamily 0, group B, member 25151776004151779319Rat
1582990LOC688917hypothetical protein LOC6889175151787824151788226Rat
1311216Gpatch3G patch domain containing 35151796456151806007Rat
1311749Gpn2GPN-loop GTPase 25151806458151813954Rat
1304729Sfnstratifin5151823422151824937Rat
1309334Zdhhc18zinc finger DHHC-type palmitoyltransferase 185151829795151856256Rat
1584911LOC366479similar to mitochondrial carrier protein MGC43995151864132151865764Rat
1309526Pigvphosphatidylinositol glycan anchor biosynthesis, class V5151886132151899024Rat
1310500Arid1aAT-rich interaction domain 1A5151904687151977973Rat
1562725RGD1562725similar to 40S ribosomal protein S205152070593152070999Rat
620675Rps6ka1ribosomal protein S6 kinase A15152078217152122684Rat
1586834LOC683456similar to basic transcription factor 35152189222152189870Rat
1593518LOC689346similar to 60S ribosomal protein L37a5152191212152191487Rat
620649Hmgn2high mobility group nucleosomal binding domain 25152195359152198813Rat
1311560Dhddsdehydrodolichyl diphosphate synthase subunit5152200681152227669Rat
1566408Lin28alin-28 homolog A5152230343152247873Rat
2323855Zfp683zinc finger protein 6835152280982152288208Rat
1308621Crybg2crystallin beta-gamma domain containing 25152289492152321539Rat
620627Cd52CD52 molecule5152322910152324469Rat
2322860LOC100360087ferritin light chain 1-like5152325852152326798Rat
620769Ubxn11UBX domain protein 115152332993152356647Rat
1308118Sh3bgrl3SH3 domain binding glutamate-rich protein like 35152357270152358643Rat
1311520Cep85centrosomal protein 855152359693152406530Rat
1585597UmodlUromoduilin-like5152411454152428140Rat
1565213Catsper4cation channel, sperm associated 45152430052152446808Rat
1311879Cnksr1connector enhancer of kinase suppressor of Ras 15152447348152458005Rat
11378091LOC108351043uncharacterized LOC1083510435152462517152469478Rat
1310179Zfp593zinc finger protein 5935152462522152464850Rat
1564994Fam110dfamily with sequence similarity 110, member D5152470898152473903Rat
1307476Pdik1lPDLIM1 interacting kinase 1 like5152494963152507693Rat
619964Trim63tripartite motif containing 635152533362152547138Rat
3707Slc30a2solute carrier family 30 member 25152559577152571800Rat
1309572Extl1exostosin-like glycosyltransferase 15152573755152588956Rat
631399Pafah2platelet-activating factor acetylhydrolase 25152606850152635956Rat
7574873LOC102546373uncharacterized LOC1025463735152643712152659793Rat
2992Stmn1stathmin 15152680412152686807Rat
11394786LOC108351044uncharacterized LOC1083510445152686552152689692Rat
7517157LOC102546455uncharacterized LOC1025464555152706950152708638Rat
1563621Paqr7progestin and adipoQ receptor family member 75152708782152720230Rat
1589922Aunipaurora kinase A and ninein interacting protein5152721799152734577Rat
1305453Mtfr1lmitochondrial fission regulator 1-like5152736580152746683Rat
1304574Selenonselenoprotein N5152748497152765489Rat
1309672Man1c1mannosidase, alpha, class 1C, member 15152775031152920130Rat
1563417Ldlrap1low density lipoprotein receptor adaptor protein 15152964294152987286Rat
1561685Maco1macoilin 15153122780153184940Rat
620451RhdRh blood group, D antigen5153197416153232009Rat
1305638Tmem50atransmembrane protein 50A5153233965153252006Rat
1359529Rsrp1arginine and serine rich protein 15153260930153264669Rat
621592Syf2SYF2 pre-mRNA-splicing factor5153269638153277562Rat
7663941LOC102551013uncharacterized LOC1025510135153402587153403951Rat
620082Runx3RUNX family transcription factor 35153507093153531137Rat
61857Clic4chloride intracellular channel 45153568937153625669Rat
1311258Srrm1serine and arginine repetitive matrix 15153675619153708187Rat
1587554Ncmapnoncompact myelin associated protein5153729250153737161Rat
1311826Rcan3RCAN family member 35153773461153790271Rat
1563439Nipal3NIPA-like domain containing 35153808169153843961Rat
1560169Stpg1sperm-tail PG-rich repeat containing 15153834263153888510Rat
7489045Mir6333microRNA 63335153843901153844011Rat
1308320Grhl3grainyhead-like transcription factor 35153893039153925045Rat
11389094LOC108351045uncharacterized LOC1083510455153945976153974495Rat
1566032LOC500567similar to RIKEN cDNA 1700029M205153976535153978848Rat
1562689Ifnlr1interferon, lambda receptor 15154037243154058862Rat
1559655Il22ra1interleukin 22 receptor subunit alpha 15154078093154102903Rat
1310060Myom3myomesin 35154109293154159943Rat
11384347LOC108351046uncharacterized LOC1083510465154181448154187834Rat
1311067Srsf10serine and arginine rich splicing factor 105154205358154219550Rat
1642418Pnrc2proline-rich nuclear receptor coactivator 25154220552154223536Rat
619713Cnr2cannabinoid receptor 25154242010154268126Rat
2636Fuca1alpha-L-fucosidase 15154269296154286545Rat
620554Hmgcl3-hydroxy-3-methylglutaryl-CoA lyase5154294841154308582Rat
621493GaleUDP-galactose-4-epimerase5154310453154314959Rat
620210Lypla2lysophospholipase 25154315033154319629Rat
1308048Pithd1PITH domain containing 15154322562154333080Rat
3827Eloaelongin A5154348167154363324Rat
1308681Rpl11ribosomal protein L115154390809154394412Rat
7506352LOC102551799uncharacterized LOC1025517995154394473154404392Rat
9069447LOC103692494uncharacterized LOC1036924945154428835154429492Rat
1563135RGD1563135hypothetical gene supported by NM_0225045154438043154438391Rat
2860Id3inhibitor of DNA binding 3, HLH protein5154489603154491172Rat
1593939E2f2E2F transcription factor 25154516611154540228Rat
1593929Asap3ArfGAP with SH3 domain, ankyrin repeat and PH domain 35154551901154596125Rat
1311369Tcea3transcription elongation factor A35154598765154634687Rat
1564482RGD1564482RGD15644825154641265154642753Rat
1310584Zfp46zinc finger protein 465154644099154655132Rat
631348Hnrnprheterogeneous nuclear ribonucleoprotein R5154668194154699967Rat
2847Htr1d5-hydroxytryptamine receptor 1D5154780958154801505Rat
61839Luzp1leucine zipper protein 15154831697154907646Rat
1585115LOC690098similar to small inducible cytokine subfamily E, member 15154869053154870471Rat
9306104LOC103692495uncharacterized LOC1036924955154893099154898934Rat
1562975Kdm1alysine demethylase 1A5154909003154965171Rat
9244234LOC103692496uncharacterized LOC1036924965154936239154938408Rat
7515741Tex46testis expressed 465154976211154980671Rat
1561426Lactbl1lactamase beta like 15154990515154996361Rat
1564232Ephb2Eph receptor B25155024478155143539Rat
2229C1qbcomplement C1q B chain5155246444155251995Rat
1306828C1qccomplement C1q C chain5155255013155258631Rat
1306716C1qacomplement C1q A chain5155261254155264101Rat
708543Epha8Eph receptor A85155293731155321016Rat
1309866Zbtb40zinc finger and BTB domain containing 405155343823155411086Rat
9359303LOC103692497uncharacterized LOC1036924975155399949155403172Rat
7523567LOC102552931uncharacterized LOC1025529315155434331155437176Rat
7734923LOC102553030uncharacterized LOC1025530305155451775155464410Rat
621348Wnt4Wnt family member 45155649238155668065Rat
71043Cdc42cell division cycle 425155690267155728385Rat
1307819Cela3bchymotrypsin like elastase 3B5155763877155772048Rat
1582902LOC690206hypothetical protein LOC6902065155794229155797614Rat
621770Hspg2heparan sulfate proteoglycan 25155812096155913751Rat
1564888Ldlrad2low density lipoprotein receptor class A domain containing 25155914517155922269Rat
1582868LOC690242similar to interferon induced transmembrane protein 2 (1-8D)5155930792155931247Rat
735213Usp48ubiquitin specific peptidase 485155935102156002722Rat
1309908Rap1gapRap1 GTPase-activating protein5156008868156074350Rat
2100Alplalkaline phosphatase, biomineralization associated5156086496156141513Rat
620293Ece1endothelin converting enzyme 15156215469156318652Rat
1311370Eif4g3eukaryotic translation initiation factor 4 gamma, 35156343663156564037Rat
7577956LOC102553758uncharacterized LOC1025537585156400222156401532Rat
7710320LOC102553854macrophage migration inhibitory factor-like5156575686156579009Rat
735099Hp1bp3heterochromatin protein 1, binding protein 35156581732156609059Rat
1305952Sh2d5SH2 domain containing 55156615889156624962Rat
1562511Kif17kinesin family member 175156628409156665752Rat
1308970Ddostdolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit5156668924156676036Rat
1305769Pink1PTEN induced kinase 15156677146156689258Rat
1311101Cdacytidine deaminase5156703579156734541Rat
1560959Fam43bfamily with sequence similarity 43, member B5156809705156813352Rat
1309944Mul1mitochondrial E3 ubiquitin protein ligase 15156855105156864517Rat
708430Camk2n1calcium/calmodulin-dependent protein kinase II inhibitor 15156876706156878486Rat
7583095LOC102555044uncharacterized LOC1025550445156879493156883008Rat
1584910LOC366490similar to 60S ribosomal protein L125156897664156898203Rat
11410510LOC108351047uncharacterized LOC1083510475156988587157008485Rat
1308559Vwa5b1von Willebrand factor A domain containing 5B15157003505157060553Rat
11399691LOC108351048uncharacterized LOC1083510485157083644157143484Rat
1308335Ubxn10UBX domain protein 105157158129157165767Rat
3340Pla2g2cphospholipase A2, group IIC5157163672157187654Rat
1597305Pla2g2fphospholipase A2, group IIF5157192047157217265Rat
9344711LOC103692498uncharacterized LOC1036924985157218957157222461Rat
1309862Pla2g2dphospholipase A2, group IID5157222636157228795Rat
62051Pla2g5phospholipase A2, group V5157247601157268968Rat
620857Pla2g2aphospholipase A2 group IIA5157282650157285295Rat
1309611Pla2g2ephospholipase A2, group IIE5157327657157333039Rat
1560468Otud3OTU deubiquitinase 35157346286157368450Rat
1596075Rnf186ring finger protein 1865157416897157418121Rat
1566357Tmco4transmembrane and coiled-coil domains 45157421738157501104Rat
62044Htr65-hydroxytryptamine receptor 65157501202157518870Rat
3151Nbl1NBL1, DAN family BMP antagonist5157524569157535701Rat
1560187Micos10mitochondrial contact site and cristae organizing system subunit 105157546855157573183Rat
7727057LOC102557514uncharacterized LOC1025575145157642078157642737Rat
1359099Capzbcapping actin protein of muscle Z-line subunit beta5157642742157742487Rat
1311627Slc66a1solute carrier family 66 member 15157744945157759370Rat
620311Akr7a2aldo-keto reductase family 7, member A25157759448157768473Rat
11403420LOC10835104960S ribosomal protein L21 pseudogene5157765280157766398Rat
11365268LOC108351050uncharacterized LOC1083510505157791676157799410Rat
628635Akr7a3aldo-keto reductase family 7 member A35157801120157813756Rat
1311709Mrto4MRT4 homolog, ribosome maturation factor5157814142157820889Rat
1310427Emc1ER membrane protein complex subunit 15157820908157846226Rat
1563121Ubr4ubiquitin protein ligase E3 component n-recognin 45157848162157956137Rat
11510646Trnav-aac3transfer RNA valine (anticodon AAC) 35157898213157898284Rat
9136635LOC10369251740S ribosomal protein S8 pseudogene5158018047158019335Rat
1624207Iffo2intermediate filament family orphan 25158042587158083311Rat
7722251LOC102555983uncharacterized LOC1025559835158043208158044951Rat
7489030Mir6215microRNA 62155158060994158061060Rat
1624206Aldh4a1aldehyde dehydrogenase 4 family, member A15158090238158115725Rat
9284665LOC10369249940S ribosomal protein S25 pseudogene5158116146158117124Rat
61894Tas1r2taste 1 receptor member 25158119894158135733Rat
11436905LOC108351051uncharacterized LOC1083510515158126142158133634Rat
1564360Pax7paired box 75158211001158313510Rat
7752676LOC102556126uncharacterized LOC1025561265158276224158281377Rat
7700793LOC102556185uncharacterized LOC1025561855158338141158345368Rat
11516840LOC108351052uncharacterized LOC1083510525158392960158510310Rat
1309439Klhdc7akelch domain containing 7A5158433394158440185Rat
1310117Igsf21immunoglobin superfamily, member 215158503090158735702Rat
7558049LOC102547437uncharacterized LOC1025474375158543207158565112Rat
9121839LOC103692500uncharacterized LOC1036925005158584656158590455Rat
7615007LOC102547560uncharacterized LOC1025475605158987961158989663Rat
1585585Arhgef10lRho guanine nucleotide exchange factor 10 like5159018373159089383Rat
1309986Rcc2regulator of chromosome condensation 25159220531159236313Rat
1560424Padi6peptidyl arginine deiminase 65159241276159256749Rat
3290Padi4peptidyl arginine deiminase 45159260675159293906Rat
3289Padi3peptidyl arginine deiminase 35159309000159336429Rat
3287Padi1peptidyl arginine deiminase 15159338850159371313Rat
11392000Trnaa-ggc1transfer RNA alanine (anticodon GGC) 15159367637159367708Rat
7726360LOC102546563uncharacterized LOC1025465635159395365159396732Rat
7706312LOC102546642uncharacterized LOC1025466425159399199159404086Rat
3288Padi2peptidyl arginine deiminase 25159428479159471113Rat
1308598Sdhbsuccinate dehydrogenase complex iron sulfur subunit B5159484378159505063Rat
1307977Atp13a2ATPase cation transporting 13A25159512208159531631Rat
1306031Mfap2microfibril associated protein 25159534202159539750Rat
1305364Croccciliary rootlet coiled-coil, rootletin5159540453159583194Rat
7629259LOC102546708uncharacterized LOC1025467085159561418159563467Rat
735063Necap2NECAP endocytosis associated 25159589856159602260Rat
1591001LOC690831similar to chromosome 17 open reading frame 375159602275159605559Rat
2323583Rps21-ps1ribosomal protein S21, pseudogene 15159606647159606990Rat
1302954Spata21spermatogenesis associated 215159612541159638073Rat
1560286Szrd1SUZ RNA binding domain containing 15159638259159662790Rat
1304787Fbxo42F-box protein 425159670662159729070Rat
1561421Cplane2ciliogenesis and planar polarity effector 25159735008159735956Rat
11454675Trnai-aau2transfer RNA isoleucine (anticodon AAU) 25159754018159754091Rat
11372222LOC108351054uncharacterized LOC1083510545159754295159761166Rat
1304766Arhgef19Rho guanine nucleotide exchange factor 195159754954159773699Rat
9356913LOC103692501uncharacterized LOC1036925015159830233159835968Rat
1307204Epha2Eph receptor A25159845773159874203Rat
2321550Rps27a-ps2ribosomal protein S27a, pseudogene 25159895060159895598Rat
1590955Fam131cfamily with sequence similarity 131, member C5159914931159931089Rat
68435Clcnkachloride voltage-gated channel Ka5159931497159946483Rat
628639Clcnkbchloride voltage-gated channel Kb5159950384159973576Rat
62021Hspb7heat shock protein family B (small) member 75159968077159971563Rat
1566083Srarpsteroid receptor associated and regulated protein5159981267159985412Rat
1307143Zbtb17zinc finger and BTB domain containing 175159993799160014899Rat
1589867Spenspen family transcriptional repressor5160015573160070915Rat
1359551Fblim1filamin binding LIM protein 15160122466160158921Rat
1566169Tmem82transmembrane protein 825160170617160175118Rat
1359157Slc25a34solute carrier family 25, member 345160175206160179978Rat
1307005Plekhm2pleckstrin homology and RUN domain containing M25160182556160219770Rat
1311815Ddi2DNA damage inducible 1 homolog 25160230958160282836Rat
1308424Agmatagmatinase5160306754160321951Rat
1359395Dnajc16DnaJ heat shock protein family (Hsp40) member C165160325088160352874Rat
61867Casp9caspase 95160356211160373774Rat
2548Cela2achymotrypsin like elastase 2A5160374031160383782Rat
1308379Ctrcchymotrypsin C5160394677160403373Rat
1307585Efhd2EF-hand domain family, member D25160407777160423811Rat
1563444Fhad1forkhead associated phosphopeptide binding domain 15160438575160555103Rat
7554176LOC102553488uncharacterized LOC1025534885160538464160541240Rat
11437439LOC108351055uncharacterized LOC1083510555160555177160560940Rat
1565452Tmem51transmembrane protein 515160570510160620647Rat
1359147Kaznkazrin, periplakin interacting protein5160637235161730513Rat
9263028LOC103692502uncharacterized LOC1036925025160843553160845775Rat
7709749LOC102554076uncharacterized LOC1025540765161251174161257997Rat
1585610LOC683584similar to POU domain, class 5, transcription factor 1-like protein 35161374587161376388Rat
7556798LOC102556543uncharacterized LOC1025565435161436069161448069Rat
1560231RGD1560231similar to 60S ribosomal protein L115161723868161724841Rat
1594531Prdm2PR/SET domain 25161769587161879150Rat
9275519LOC103692503uncharacterized LOC1036925035161773906161788542Rat
2324274LOC100362684ribosomal protein S20-like5161889229161889746Rat
1587379LOC298611alpha-tubulin pseudogene and flanks5161924553161926288Rat
61819Pdpnpodoplanin5161947137161981441Rat
11357843LOC108351056uncharacterized LOC1083510565162029410162032327Rat
1311416Lrrc38leucine rich repeat containing 385162031722162053723Rat
7570163LOC102555587uncharacterized LOC1025555875162104142162109315Rat
7556152LOC102555984uncharacterized LOC1025559845162133656162138397Rat
1588644Pramef27PRAME family member 275162158000162165475Rat
1564061Pramef8PRAME family member 85162183397162197119Rat
1565680Oog1oogenesin 15162243154162249128Rat
6487785LOC100912329ubiquitin-conjugating enzyme E2 H-like5162254946162256688Rat
1563257Aadacl3arylacetamide deacetylase-like 35162323373162332014Rat
1587426LOC691162hypothetical protein LOC6911625162351021162369987Rat
7240728LOC101241876ubiquitin-conjugating enzyme E2H pseudogene5162358110162359852Rat
1587431Pramef12PRAME family member 125162378442162388786Rat
1587437Pramef20PRAME family member 205162406599162411066Rat
1561813Pramef25PRAME family member 255162414706162416952Rat
1587447Pramef17PRAME family member 175162439717162443016Rat
1584908LOC366497similar to pyruvate kinase 35162479317162484699Rat
1593379Rps4x-ps4ribosomal protein S4, X-linked, pseudogene 45162482855162483749Rat
1308878RGD1308878similar to arylacetamide deacetylase5162506652162516264Rat
1563334RGD1563334similar to novel protein similar to esterases5162593460162602329Rat
1565761Aadacl4arylacetamide deacetylase-like 45162676109162688907Rat
1559644RGD1559644similar to novel protein similar to esterases5162727638162751145Rat
7688236LOC102550246uncharacterized LOC1025502465162805112162808303Rat
1305584Dhrs3dehydrogenase/reductase 35162809090162843385Rat
1308403Vps13dvacuolar protein sorting 13 homolog D5162891451163119239Rat
7497539LOC10255680460S ribosomal protein L36-like5163119247163124894Rat
621238Tnfrsf1bTNF receptor superfamily member 1B5163136390163167299Rat
3879Tnfrsf8TNF receptor superfamily member 85163186349163231578Rat
2319953LOC100361514hypothetical LOC1003615145163310412163325960Rat
9212267LOC103690344zinc finger protein 501-like5163352299163359795Rat
7623967LOC102551014zinc finger protein 624-like5163506732163530630Rat
7603077LOC102550823casein kinase I isoform gamma-3-like5163543347163545451Rat
1586278LOC691228similar to reduced expression 25163547938163679841Rat
2319680LOC100361693zinc finger protein 53-like5163576463163596466Rat
6500535LOC100910080casein kinase I isoform gamma-3-like5163697068163698479Rat
7694630LOC102551209uncharacterized LOC1025512095163712051163712873Rat
2319112LOC100361968Zfp758 protein-like5163735536163757167Rat
9461644LOC10369251960S ribosomal protein L9 pseudogene5163773531163774208Rat
6484979LOC100912971zinc finger protein 808-like5163826654163845675Rat
6499833LOC100910191casein kinase I isoform gamma-3-like5163847881163849418Rat
7614436LOC102551478zinc finger protein 347-like5163901453163902875Rat
9101500LOC103692505uncharacterized LOC1036925055163933296163940524Rat
9425811LOC103692504uncharacterized LOC1036925045163963076163990403Rat
1586256LOC691254hypothetical protein LOC6912545164031215164110413Rat
9133338LOC103692506uncharacterized LOC1036925065164076581164084113Rat
1586249Rex2reduced expression 25164222515164235267Rat
9203001LOC103692507uncharacterized LOC1036925075164238193164240357Rat
1625998Vom2r-ps78vomeronasal 2 receptor, pseudogene 785164282149164282352Rat
2318719LOC100362164casein kinase 1, gamma 3-like5164311466164314345Rat
1598209LOC500584similar to casein kinase 1, gamma 3 isoform 25164316029164361225Rat
2318582LOC100362203Predicted gene, OTTMUSG00000010965-like5164391831164392507Rat
11425502LOC108351057uncharacterized LOC1083510575164393934164410220Rat
7532802LOC102552821zinc finger protein 2 homolog5164419299164420518Rat
1565622RGD1565622RGD15656225164419299164425034Rat
1561413RGD1561413similar to BC021442 protein5164496684164547343Rat
9321252LOC103692508malate dehydrogenase, mitochondrial pseudogene5164502396164511863Rat
1586231LOC691280similar to Zinc finger protein 180 (HHZ168)5164644438164665455Rat
1587376Miipmigration and invasion inhibitory protein5164672464164679503Rat
628843Mfn2mitofusin 25164684244164715414Rat
621382Plod1procollagen-lysine, 2-oxoglutarate 5-dioxygenase 15164720629164747071Rat
1305350RGD1305350similar to RIKEN cDNA 2510039O185164751413164757680Rat
3194Nppbnatriuretic peptide B5164796176164797538Rat
3193Nppanatriuretic peptide A5164808407164809716Rat
1305379Clcn6chloride voltage-gated channel 65164811815164844554Rat
1309952Mthfrmethylenetetrahydrofolate reductase5164844642164864360Rat
9312074LOC103692509NHP2-like protein 1 pseudogene5164864885164866713Rat
7658417LOC102551309uncharacterized LOC1025513095164875558164885606Rat
1359346Agtrapangiotensin II receptor-associated protein5164888069164898387Rat
7646732LOC102551534uncharacterized LOC1025515345164898531164902797Rat
7635238LOC102551596uncharacterized LOC1025515965164907768164908206Rat
1585098Draxindorsal inhibitory axon guidance protein5164913085164943012Rat
11399174LOC10835105860S ribosomal protein L35a pseudogene5164923228164923678Rat
1307499Mad2l2mitotic arrest deficient 2 like 25164943183164956255Rat
620418Fbxo6F-box protein 65164956285164962075Rat
1562463Fbxo44F-box protein 445164962921164972273Rat
621751Fbxo2F-box protein 25164972483164977912Rat
11370875LOC108351059uncharacterized LOC1083510595165022252165027934Rat
1305820Disp3dispatched RND transporter family member 35165051522165099826Rat
11463859LOC108351060uncharacterized LOC1083510605165122632165136171Rat
7568401LOC102551951uncharacterized LOC1025519515165169281165192499Rat
1309588Ubiad1UbiA prenyltransferase domain containing 15165247630165259228Rat
68371Mtormechanistic target of rapamycin kinase5165263813165373967Rat
7553363Angptl7angiopoietin like 75165311794165318361Rat
1593248Exosc10exosome component 105165374964165398195Rat
7530545LOC10255221240S ribosomal protein S2-like5165384632165385917Rat
620796Srmspermidine synthase5165405168165408325Rat
620214Masp2MBL associated serine protease 25165415105165429857Rat
1310906TardbpTAR DNA binding protein5165432089165442232Rat
1583785LOC366502hypothetical gene supported by NM_0229495165463273165464011Rat
1585063LOC691354hypothetical protein LOC6913545165464832165491375Rat
9103835LOC103692510uncharacterized LOC1036925105165559735165562108Rat
1585054LOC691363hypothetical protein LOC6913635165573320165573677Rat
1563533Casz1castor zinc finger 15165625119165777053Rat
9140801LOC103692511uncharacterized LOC1036925115165731734165740119Rat
68336Pex14peroxisomal biogenesis factor 145165782895165918445Rat
620334DffaDNA fragmentation factor subunit alpha5165922893165935822Rat
2383Cortcortistatin5165942780165944221Rat
7730210LOC102553292putative uncharacterized protein YIL169C-like5165944683165945663Rat
5128728Cenpscentromere protein S5165946106165955723Rat
1583832Pgdphosphogluconate dehydrogenase5165966128165982327Rat
621520Kif1bkinesin family member 1B5165994803166133497Rat
7740951LOC102547502uncharacterized LOC1025475025166138681166142982Rat
9378858LOC103690193uncharacterized LOC1036901935166141254166142982Rat
1304738Ube4bubiquitination factor E4B5166156033166259069Rat
9393794LOC103692512uncharacterized LOC1036925125166275112166276938Rat
1562168Rbp7retinol binding protein 75166278214166282832Rat
1587396LOC691196similar to arylacetamide deacetylase5166293476166335979Rat
1310996Nmnat1nicotinamide nucleotide adenylyltransferase 15166409460166430291Rat
9341305LOC103692520uncharacterized LOC1036925205166430099166432027Rat
1309253Lzicleucine zipper and CTNNBIP1 domain containing5166430305166443485Rat
1562749Ctnnbip1catenin, beta-interacting protein 15166464170166513030Rat
9153855LOC103692513uncharacterized LOC1036925135166514351166524490Rat
1306458Clstn1calsyntenin 15166533262166601686Rat
1310990Pik3cdphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta5166602053166628028Rat
1583947Tmem201transmembrane protein 2015166672700166695288Rat
1583942Slc25a33solute carrier family 25 member 335166701463166726794Rat
7665827LOC102548220uncharacterized LOC1025482205166731267166734162Rat
11081182LOC10012536640S ribosomal protein S25166864178166872132Rat
7685779LOC102548366uncharacterized LOC1025483665166888814166891407Rat
1309319Spsb1splA/ryanodine receptor domain and SOCS box containing 15166913734166978534Rat
11369953LOC108351061uncharacterized LOC1083510615166980913166984343Rat
1306562H6pdhexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)5166994683167030441Rat
9106117LOC103692514uncharacterized LOC1036925145167056426167086851Rat
2325584Mir34amicroRNA 34a5167092491167092592Rat
1311096Gpr157G protein-coupled receptor 1575167109691167125380Rat
68328Slc2a5solute carrier family 2 member 55167142182167174203Rat
9467056LOC103692515uncharacterized LOC1036925155167165003167169991Rat
1583902Slc2a7solute carrier family 2 member 75167195981167211613Rat
70516Ca6carbonic anhydrase 65167226246167244786Rat
11477874LOC108351063uncharacterized LOC1083510635167267927167270543Rat
7540943LOC102548845uncharacterized LOC1025488455167268923167270719Rat
2553Eno1enolase 15167288223167299610Rat
629475Rerearginine-glutamic acid dipeptide repeats5167330966167664506Rat
9210669LOC103692516uncharacterized LOC1036925165167340656167342934Rat
11484356LOC108351064small nuclear ribonucleoprotein G pseudogene5167373925167374737Rat
7489027Mir6332microRNA 63325167402968167403088Rat
11382308LOC108351072LYR motif-containing protein 1-like5167552301167557016Rat
708502Slc45a1solute carrier family 45, member 15167672134167696331Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10455D5Wox21115154056366154056479Ratregion
10490D5Uwm51735153453439153453609Ratregion
10491D5Wox142255153453472153453696Ratregion
10496D5Mco181935156314394156314593Ratregion
10517D5Arb142565160384322160384578Ratregion
11001D5Wox101615164807242164807402Ratregion
11002D5Mit151405164809772164809913Ratregion
34136D5Mgh212505150360936150361153Ratregion
34168D5Mgh221445157212263157212422Ratregion
34206D5Mgh151595167739539167739697Ratregion
34210D5Mgh141505149568795149568944Ratregion
34210D5Mgh141505149568588149568944Ratregion
33702D5Mit161985160338134160338325Ratregion
36115D5Rat391415152403977152404117Ratregion
36207D5Rat471215162817289162817407Ratregion
36275D5Rat571445154732228154732375Ratregion
35348D5Rat451535158854038158854190Ratregion
37148D5Rat432005151080880151081085Ratregion
37812D5Rat1052135154794697154794907Ratregion
37864D5Rat932475153577601153577831Ratregion
37936D5Rat941885156937460156937645Ratregion
36396D5Mgh311345161050602161050735Ratregion
36598D5Rat441585158621076158621233Ratregion
36628D5Rat481515166237695166237826Ratregion
34855D5Rat422875155748601155748885Ratregion
35825D5Rat411395155051873155052001Ratregion
35835D5Rat661705155835939155836107Ratregion
35873D5Rat461115159397491159397601Ratregion
39764D5Rat1742465151878398151878637Ratregion
39864D5Rat1761595157113519157113677Ratregion
38380D5Rat792145156082101156082296Ratregion
40654D5Rat1772135160330044160330252Ratregion
40740D5Rat1812275165550783165550999Ratregion
38916D5Rat1062005156443753156443962Ratregion
38958D5Rat672085158596095158596302Ratregion
39168D5Rat992355157319671157319911Ratregion
39176D5Rat1032005150340838150341028Ratregion
39478D5Rat2042365157224882157225114Ratregion
42762D5Rat2402095150423320150423539Ratregion
42764D5Rat2621085155430617155430727Ratregion
42766D5Rat2422025157275770157275962Ratregion
42767D5Rat2431335166481145166481283Ratregion
42768D5Rat2602495164803790164804026Ratregion
41492D5Rat1781745161084664161084824Ratregion
41512D5Rat1751385154547295154547440Ratregion
42320D5Rat561525158585968158586120Ratregion
41044D8Rat1422145165654280165654483Ratregion
41070D5Rat1801495165718244165718386Ratregion
43873D5Got1141865165627541165627726Ratregion
43989D5Got872345154561244154561474Ratregion
43990D5Got881615155493520155493679Ratregion
43992D5Got1361175157514839157514955Ratregion
43993D5Got921275157514842157514968Ratregion
43995D5Got911845159329006159329189Ratregion
43996D5Got1041655163109276163109440Ratregion
43997D5Got1011255162861915162862039Ratregion
43998D5Got1371175162761377162761493Ratregion
43999D5Got982385162804124162804360Ratregion
44001D5Got971665163262616163262781Ratregion
44002D5Got963475161879412161879758Ratregion
44003D5Got1021395159778937159779070Ratregion
44007D5Got1132855167184438167184722Ratregion
44009D5Got1101985166866143166866340Ratregion
44009D5Got1101985166763422166763619Ratregion
44010D5Got1052525164943662164943913Ratregion
44012D5Got1061655165477715165477877Ratregion
60473D5Got1003395159860901159861239Ratregion
60474D5Got1031645163170459163170694Ratregion
60494D5Got831945151187978151188171Ratregion
60495D5Got852655154032758154033022Ratregion
60496D5Got891715155937541155937711Ratregion
60497D5Got942475158372709158372955Ratregion
69512D5Uwm401725154129339154129574Ratregion
69514D5Uwm411365154510987154511126Ratregion
69516D5Uwm421965153097582153097789Ratregion
69518D5Uwm431275155136406155136543Ratregion
69520D5Uwm441245157430818157430929Ratregion
69522D5Uwm452045158199960158200159Ratregion
69524D5Uwm461605160176864160177023Ratregion
69526D5Uwm472195159872617159872829Ratregion
69529D5Uwm492495166409918166410170Ratregion
69565D5Uwm552305154933567154933796Ratregion
625814D5Got862155153258975153259189Ratregion
60013D12Got222395154624563154624801Ratregion
66405D5Mco12535153851244153851485Ratregion
66704D5Mco351655153552704153552872Ratregion
67772D5Uwm31415153601801153601963Ratregion
1630702D5Got2511415167269941167270081Ratregion
1579101D18Chm132255159925513159925749Ratregion
1627786D5Cebr15158905503158905735Ratregion
1628659D5Mco591505153552693153552842Ratregion
1628677D5Got2771365154276966154277101Ratregion
1641627D8Mco22525153552704153552955Ratregion
1640741D5Mco3181465153552744153552889Ratregion
1635336D5Kyo11995155994039155994223Ratregion
1635827D5Wox333455164794256164794600Ratregion
1636406D5Wox275157296559157296753Ratregion
1633707D5Wox432185154654078154654295Ratregion
1634858D5Got2631765159868930159869170Ratregion
7206738PZB01112_B737485152033032152033779Ratregion
7206072Srm05165407456165408136Ratregion
7206450Id314645154489580154491043Ratregion
7206480Mad2l21455164951723164951867Ratregion
5035913PMC305683P34755154489640154490114Ratregion
5035951PMC316718P14945164808537164809030Ratregion
5036075Afar1695157768277157768445Ratregion
5038958RH1274312125153234195153234406Ratregion
7206402mMECIR6337715166964506166965276Ratregion
7206514UniSTS:5468138125167000648167001459Ratregion
7206686UniSTS:5475232175164808707164808923Ratregion
5036354UniSTS:1434181895154801151154801339Ratregion
5036376Itga205157965849157966278Ratregion
5039142RH1275362045167664136167664339Ratregion
5039156RH1275442075151011962151012168Ratregion
5036883AU0495052075154228158154228364Ratregion
5036975AU0498002005149766978149767186Ratregion
5037131HSC11D0222825165432255165432536Ratregion
5037139A001V191645150364964150365127Ratregion
5037149A009Q18955152495154152495248Ratregion
5035596RH687561335151383415151383547Ratregion
5031274PMC123178P15135164808479164808991Ratregion
5025950RH1303212115151448063151448273Ratregion
5025976RH1304241855164796730164797367Ratregion
7205832D17S18359575162405038162405994Ratregion
7206178UniSTS:532426645155930951155931014Ratregion
5028737RH469011685156169115156169282Ratregion
5031386PMC15566P12665164808767164809032Ratregion
5034129RH1414722185156677653156677870Ratregion
5028799RH1423711775156564573156564749Ratregion
5028825RH1424731035150120661150120763Ratregion
5031564AU0479102365158290985158291220Ratregion
5026334RH1318081855162066671162066855Ratregion
5026334RH1318081855162053219162053403Ratregion
5028973RH1430281305157257796157257925Ratregion
5031830AU0470112275166805603166805829Ratregion
5031830AU0470112275166805603166805713Ratregion
5034369D6S19372645153123769153124032Ratregion
5031898AU0467812215166963438166963658Ratregion
5034510BI2802471715152748515152748685Ratregion
5034548BE1193581785167168284167168462Ratregion
5034584AW2520872075159971236159971442Ratregion
5034648BI2750712345157814186157814419Ratregion
5034648BI2750712345157807608157807841Ratregion
5026740RH1333542035158115417158115619Ratregion
5026760RH1334252055166602184166602388Ratregion
5032084D4Mit541365156243687156243822Ratregion
5032113RH944421965154802022154802217Ratregion
5032145RH94538935154490691154490783Ratregion
5032153RH945691575152686605152686761Ratregion
5032155RH94576795154286466154286544Ratregion
5034732BI2762051815167662415167662595Ratregion
5034734BF3919161635166440526166440688Ratregion
5034782AA8925601005154219233154219332Ratregion
5026782RH1335072185156677282156677499Ratregion
5026866RH1338272205154490803154491022Ratregion
5026888RH1339152045155255035155255238Ratregion
5029401RH1446511935157261684157261876Ratregion
5035150AI1753511665157749510157749675Ratregion
5032365AW047546975155293776155293872Ratregion
5032367AU023234975162198521162198617Ratregion
5032489D4Ertd22e2075159640718159640924Ratregion
5032491D4Ertd432e2045165760588165760791Ratregion
5032517Nppa3525164808144164808495Ratregion
5035366BE1144971505166959629166959778Ratregion
5027125RH678671265156169156156169281Ratregion
5027169SGC382582575165893826165894082Ratregion
5032655RH1348051895162891615162891803Ratregion
5032683RH1349102025149922536149922737Ratregion
5027277AW5501921395150060182150060320Ratregion
5027279AI2553951135155261614155261726Ratregion
5027281AI7853031005166999273166999372Ratregion
5027283AW5452841325159873691159873822Ratregion
5029917BF394391905150039209150039298Ratregion
5032751RH1351671825151495422151495603Ratregion
5035192BG3813311545158503116158503269Ratregion
5030083BE1100841545160961062160961215Ratregion
5030173BF3958741245150027215150027338Ratregion
5024996BB450868835165776841165776923Ratregion
5030253BE0995531685155831009155831176Ratregion
5030317BE1057191625164636889164637050Ratregion
5033129RH1377041325161135017161135148Ratregion
5025192RH1273692045151044973151045176Ratregion
5025246RH1275782205161946325161946544Ratregion
5030415BE1062451095166440980166441088Ratregion
5030469BE1066281635152965027152965189Ratregion
5030481BF4032941645150562055150562218Ratregion
5033267RH1382021645156862879156863042Ratregion
5028053R750601505166156802166156951Ratregion
5030701BI289834905157346479157346568Ratregion
5030781AW5352681815152773331152773511Ratregion
5030783AW5353111685149998090149998257Ratregion
5030837BE1140201595164957800164957958Ratregion
5030853BE1207351805159725645159725824Ratregion
5025636RH1290791525153769763153769914Ratregion
5025704RH1293371805166049322166049501Ratregion
5028251D4Mit312665160442161160442226Ratregion
5028322SHGC-741831745167662428167662601Ratregion
5030991BE1088711855156484841156485024Ratregion
5033699RH1397902195156073805156074023Ratregion
5033839RH1403102175164888326164888542Ratregion
5028436AI1735041925152359833152360024Ratregion
5028438AU0146681315166156062166156192Ratregion
5054905RH1434921065155387454155387559Ratregion
5055029RH1435651945159971807159972000Ratregion
5051378AI3268721065150509070150509175Ratregion
5051380AI4812781485150406011150406158Ratregion
5053577RH1427291085166619130166619237Ratregion
5053619RH1427531045153273077153273180Ratregion
5055979RH1441132415156458251156458491Ratregion
5056451RH1443861085150107896150108003Ratregion
5051693RH946031545150288157150288309Ratregion
5056959RH1446792105166516249166516458Ratregion
5051809RH946711975167299333167299529Ratregion
5054127RH1430462075167356697167356903Ratregion
5057488BG3759202135158431851158432063Ratregion
5054435RH1432221485157721814157721961Ratregion
5054443RH1432272855150413644150413926Ratregion
5054727RH1433901075162893833162893939Ratregion
5059416AW5306601515154885296154885446Ratregion
5059462AW5309971785152610637152610814Ratregion
5057546BE0955212025167686989167687190Ratregion
5057704BF3860391745159426720159426893Ratregion
5057748AI5486351495164909766164909914Ratregion
5055639RH1439172995151946450151947650Ratregion
5055667RH1439331075150521282150521388Ratregion
5057982AI548909905167664263167664352Ratregion
5058658BE1022761555153844589153844743Ratregion
5055855RH1440411095165070393165071528Ratregion
5055953RH1440981215156626238156626358Ratregion
5059568BE0973021855160975431160975615Ratregion
5059580BE0973351955166142755166142949Ratregion
5056131RH1442002335152411538152411770Ratregion
5056723RH1445432385160464209160464446Ratregion
5056909RH1446501715151806373151806543Ratregion
505221342.MMHAP20FRF12.seq1745161847761161847934Ratregion
5052438C759632485159931592159931839Ratregion
5058188AI1362511925157881893157882084Ratregion
5059048BE1027471665155914519155914684Ratregion
5059744BE0977871685152965916152966083Ratregion
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5502152MARC_6491-6492:996689696:1775157816993157817663Ratregion
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12790687rs6600170505155945375155945375Ratregion
Position Markers

Flank 1: (D5Mgh14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25143,608,201 - 143,608,494 (+)MAPPER
mRatBN7.25143,608,344 - 143,608,494 (+)MAPPER
Rnor_6.05149,568,795 - 149,568,944NCBI
Rnor_6.05149,568,588 - 149,568,944NCBI
Rnor_5.05153,256,057 - 153,256,206UniSTS
Rnor_5.05153,255,850 - 153,256,206UniSTS
RGSC_v3.45150,236,111 - 150,236,260UniSTS
RGSC_v3.45150,236,110 - 150,236,260RGD
RGSC_v3.15150,246,149 - 150,246,299RGD
Celera5142,062,533 - 142,062,682UniSTS
Cytogenetic Map5 RGD
Flank 2: (D5Mgh15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,165,494 - 161,165,651 (+)MAPPER
Rnor_6.05167,739,539 - 167,739,697NCBI
Rnor_5.05171,364,494 - 171,364,652UniSTS
RGSC_v3.45167,844,579 - 167,844,737RGD
RGSC_v3.45167,844,579 - 167,844,737UniSTS
RGSC_v3.15167,854,767 - 167,854,925RGD
RH 3.4 Map51122.3RGD
RH 3.4 Map51122.3UniSTS
RH 2.0 Map51103.8RGD
Cytogenetic Map5 RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540777918154732375Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)547745646167946134Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)561612600168109659Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)571552569157225114Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)584963058173504662Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5100723739153577831Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5102945579154732228Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5107119214152119214Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111278451156278451Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112279412157279412Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112279412157279412Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112279412157279412Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112279412157279412Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112279412157279412Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114140832159140832Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114140832159140832Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116767924161767924Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116767924161767924Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116767924161767924Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116767924161767924Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125455818149568944Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125455818157225114Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5128687766173687766Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5131077716173707219Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132551937173707219Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133943857173707219Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133943857173707219Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5134197905173707219Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134502140157212422Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5134712342173707219Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5134712342173707219Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5136354114173707219Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136640731173707219Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138154677172402610Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5142307322173707219Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5142309061173707219Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149029982173687766Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5149568588167739697Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5149832180164807402Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5150340838164298744Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5150360936167946134Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5157212422167739539Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5157319671171194163Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5157319671173707219Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5161084664173707219Rat
631498Bp100Blood pressure QTL 1004.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5164797538164808407Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: rats were injected with (2g/kg body wt) 20% glucose at 28, 30 and 32 wks of age and HDL-cholesterol and total cholesterol were analysed using an automatic analyser 619689
qtl_general number of animals used: 76(WOKW X DA)F2 and 74(DA X WOKW)F2 males 619689
qtl_general software used: MAPMAKER (EXP3.0b and QTL1.1b) 619689
qtl_statistics_details LOD=3.34 for HDL-cholesterol 619689