Kidm39 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Kidm39 (Kidney mass QTL 39) Rattus norvegicus

Symbol: Kidm39
Name: Kidney mass QTL 39
RGD ID: 2301406
Also known as: KmC16QTL
Trait: kidney mass   (VT:0002707)    
Measurement Type: both kidneys wet weight to body weight ratio   (CMO:0000340)    
LOD Score: Not Available
P Value: 0.002
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,851,709 - 15,884,239RGD_MAPPER_PIPELINE
Rnor_6.0163,296,688 - 17,464,293RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0163,263,508 - 17,347,173RGDRnor5.0
RGSC_v3.4162,935,812 - 16,359,278RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: SS.LEW-(D16Rat38-D16Chm66)/Ayd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait
kidney mass  (IDA)

Rat Strain

References

References - curated
1. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
708372Erc2ELKS/RAB6-interacting/CAST family member 21632585804283592Rat
11422894LOC108348452uncharacterized LOC1083484521633438343382963Rat
7668173LOC102553494aconitate hydratase, mitochondrial-like1633502133355021Rat
9302900LOC103693877PRAME family member 12 pseudogene1633965063403820Rat
11444877LOC108353109uncharacterized LOC1083531091635875793591751Rat
6491687LOC100911661uncharacterized LOC1009116611636922363701658Rat
1311053Dux4double homeobox 41637549683766532Rat
1565219Cphx1cytoplasmic polyadenylated homeobox 11637871413796715Rat
1305689Tmem254transmembrane protein 2541638174023821270Rat
1306662Plac9placenta associated 91638511073866008Rat
1309911Anxa11annexin A111638671933912043Rat
11485626LOC108353089uncharacterized LOC1083530891639122493916050Rat
1565017RGD1565017similar to RS21-C6 protein1639353743936145Rat
9261783LOC103693874cyclin-dependent kinases regulatory subunit 2 pseudogene1641622124165547Rat
9442066LOC103693876uncharacterized LOC1036938761644472064458282Rat
69250Wnt5aWnt family member 5A1644694514490271Rat
2322864LOC100360083ribosomal protein L5-like1647013654703408Rat
631361Cacna2d3calcium voltage-gated channel auxiliary subunit alpha2delta 31648713485795825Rat
9134190LOC103693956uncharacterized LOC1036939561649833884985193Rat
2321691Lrtm1leucine-rich repeats and transmembrane domains 11649937285005110Rat
9317194LOC103693891uncharacterized LOC1036938911650970415114158Rat
11439712LOC10834845560S ribosomal protein L7 pseudogene1652152345219665Rat
1592051LOC364506similar to heterogeneous nuclear ribonucleoprotein A31658404515842243Rat
11384323LOC108348375uncharacterized LOC1083483751658487245873218Rat
2322724LOC100360125ribosomal protein S7-like1659591135974304Rat
1303129Selenokselenoprotein K1660359266044240Rat
1311878Actr8actin related protein 81660479776062586Rat
1311392Il17rbinterleukin 17 receptor B1660642876077978Rat
735166Chdhcholine dehydrogenase1660780836109386Rat
70973Cacna1dcalcium voltage-gated channel subunit alpha1 D1661102946405022Rat
11357136LOC108348454uncharacterized LOC1083484541661675336172955Rat
9415503LOC103693892uncharacterized LOC1036938921662949146306789Rat
11399163LOC108348453calsequestrin-1-like1664401536467211Rat
1561298Dcp1adecapping mRNA 1A1665424156583856Rat
9415166LOC103693893uncharacterized LOC1036938931665635546566639Rat
11474719LOC10835309060S ribosomal protein L34 pseudogene1665857956592224Rat
7607439LOC102555502uncharacterized LOC1025555021665936896595978Rat
621036Tkttransketolase1666096706634608Rat
11478084LOC108348374uncharacterized LOC1083483741666422826645346Rat
67383Prkcdprotein kinase C, delta1666551316675746Rat
11437187LOC108348373uncharacterized LOC1083483731666882336692628Rat
1562654Rft1RFT1 homolog1667123876746711Rat
7699737LOC102555556uncharacterized LOC1025555561667354646737557Rat
61999Sfmbt1Scm-like with four mbt domains 11667756486896155Rat
9196167LOC103693894farnesyl pyrophosphate synthase-like1667829626790075Rat
9454675LOC103693895uncharacterized LOC1036938951668963016901775Rat
735152StimateSTIM activating enhancer1669032126958786Rat
7708283LOC102555619uncharacterized LOC1025556191669085686917838Rat
727804Mustn1musculoskeletal, embryonic nuclear protein 11669627376964987Rat
70881Itih4inter-alpha-trypsin inhibitor heavy chain 41669703676985538Rat
620633Itih3inter-alpha trypsin inhibitor, heavy chain 31669837797007288Rat
7751942LOC102555675uncharacterized LOC1025556751670004857001009Rat
1306099Itih1inter-alpha trypsin inhibitor, heavy chain 11670123767026542Rat
1304995Nek4NIMA-related kinase 41670350027080272Rat
1309125Spcs1signal peptidase complex subunit 11670803897081957Rat
1359293Glt8d1glycosyltransferase 8 domain containing 11670824507097405Rat
631354Gnl3G protein nucleolar 31670975807103518Rat
1565549Pbrm1polybromo 11671037147202899Rat
9121855LOC103693896uncharacterized LOC1036938961672012777204807Rat
1307583Smim4small integral membrane protein 41672066327210518Rat
1305524Nt5dc25'-nucleotidase domain containing 21672124887220541Rat
2324745Stab1stabilin 11672204347250934Rat
1306950Nischnischarin1672543727290670Rat
1309921Tnnc1troponin C1, slow skeletal and cardiac type1672922077295238Rat
1306079Sema3gsemaphorin 3G1673035827315214Rat
1308638Phf7PHD finger protein 71673235277336609Rat
1311938Bap1Brca1 associated protein 11673366857345511Rat
621795Dnah1dynein, axonemal, heavy chain 11673451317407009Rat
1564325RGD1564325similar to ribosomal protein S241674116817412594Rat
1588237LOC680729similar to GDP-mannose 4, 6-dehydratase1674151657416488Rat
1304855Capn7calpain 71674355417472483Rat
620220Sh3bp5SH3-domain binding protein 51674733677559976Rat
1359565Mettl6methyltransferase like 61675599647588841Rat
1310057Eaf1ELL associated factor 11675882177602966Rat
2377Colqcollagen like tail subunit of asymmetric acetylcholinesterase1676263807681621Rat
11370331LOC108353071uncharacterized LOC1083530711676756147683853Rat
9125647LOC103693897uncharacterized LOC1036938971677149387717037Rat
619849Hacl12-hydroxyacyl-CoA lyase 11677200477758119Rat
1305316Btdbiotinidase1677581927791301Rat
11362131LOC108353072uncharacterized LOC1083530721678105227811719Rat
1559931Ankrd28ankyrin repeat domain 281678168767879023Rat
7532294LOC10254978439S ribosomal protein L37, mitochondrial-like1678426157844312Rat
9317203LOC103693898histone H3.3C-like1679239117925392Rat
7713473LOC102550037uncharacterized LOC1025500371679945658002719Rat
7516541LOC102550145uncharacterized LOC1025501451680297818031579Rat
2322081Galnt15polypeptide N-acetylgalactosaminyltransferase 151681275998178101Rat
11493406LOC108353073uncharacterized LOC1083530731681781578181417Rat
1590566Dph3diphthamide biosynthesis 31682020488207492Rat
1311534Oxnad1oxidoreductase NAD-binding domain containing 11682072238236292Rat
3113Msmbmicroseminoprotein, beta1682802758300853Rat
1563014Ncoa4nuclear receptor coactivator 41683029508323294Rat
3863Timm23translocase of inner mitochondrial membrane 231683240388350067Rat
620387Pargpoly (ADP-ribose) glycohydrolase1683501688457999Rat
11520167LOC108348371uncharacterized LOC1083483711683823198388145Rat
9074103LOC103693900uncharacterized LOC1036939001683901148393018Rat
9332700LOC103693899uncharacterized LOC1036938991684454308448160Rat
7743208LOC102550503uncharacterized LOC1025505031684669638469867Rat
1310916Ogdhloxoglutarate dehydrogenase L1684974958523552Rat
1586999LOC680885hypothetical protein LOC6808851685537118564380Rat
1304627Chatcholine O-acetyltransferase1685768588686131Rat
62072Slc18a3solute carrier family 18 member A31686826688685529Rat
1590788LOC498577similar to ribosomal protein L13A1687092978710220Rat
1311509Ercc6ERCC excision repair 6, chromatin remodeling factor1687340288804610Rat
628616Drgxdorsal root ganglia homeobox1688238728853430Rat
1564899RGD1564899similar to chromosome 10 open reading frame 711688799078907462Rat
7507794LOC102547142uncharacterized LOC1025471421689075578942469Rat
9212556LOC103693903uncharacterized LOC1036939031689252988941738Rat
9102097LOC103693902uncharacterized LOC1036939021689764228978670Rat
1561145Tmem273transmembrane protein 2731690233879054664Rat
2318714Fam170bfamily with sequence similarity 170, member B1690740449076885Rat
1310423Vstm4V-set and transmembrane domain containing 41690881429172855Rat
1564142Wdfy4WDFY family member 41691944469430764Rat
1311738Lrrc18leucine rich repeat containing 181692343419258849Rat
1307237Arhgap22Rho GTPase activating protein 221694542699613508Rat
621506Mapk8mitogen-activated protein kinase 81696208549709342Rat
9274701LOC103693931uncharacterized protein-like1697032259709670Rat
1565652Frmpd2FERM and PDZ domain containing 21697451719879490Rat
1309812Ptpn20protein tyrosine phosphatase, non-receptor type 201699075849973514Rat
11466116LOC108348435uncharacterized LOC108348435161016393410166399Rat
7558280LOC102550656uncharacterized LOC102550656161023903610242023Rat
621512Gdf10growth differentiation factor 10161025050810262383Rat
1586196Gdf2growth differentiation factor 2161026751010293545Rat
3545Rbp3retinol binding protein 3161027777510286243Rat
1309835Zfp488zinc finger protein 488161029296410304794Rat
1596785LOC681303similar to tumor endothelial marker 8 isoform 1 precursor161030389110361476Rat
6500283LOC100910026uncharacterized LOC100910026161031077710343383Rat
1563190AntxrlANTXR like161038394310410327Rat
1307719Anxa8annexin A8161041717410432388Rat
61864Npy4rneuropeptide Y receptor Y4161048945010490706Rat
1308922Gprin2G protein regulated inducer of neurite outgrowth 2161052488010534705Rat
727964Syt15synaptotagmin 15161055413610564934Rat
1565067Shld2shieldin complex subunit 2161057030710661528Rat
7676267LOC102551861ZW10 interactor-like161060913210611282Rat
2708Glud1glutamate dehydrogenase 1161066148610695557Rat
1584388Fam25afamily with sequence similarity 25, member A161070226410706073Rat
70996Sncgsynuclein, gamma161072211010726648Rat
1311461Mmrn2multimerin 2161072755210749303Rat
6486715LOC100912503uncharacterized LOC100912503161075570410758890Rat
70989Bmpr1abone morphogenetic protein receptor type 1A161075827810852170Rat
11399720LOC108353075uncharacterized LOC108353075161077728210780246Rat
1564875Ldb3LIM domain binding 3161087834810943016Rat
621701Opn4opsin 4161094335310966602Rat
2321348LOC100360810NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4-like161095780110961651Rat
1590924WaplWAPL cohesin release factor161102932511108867Rat
1583250Isca1-ps1iron-sulfur cluster assembly 1 homolog (S. cerevisiae) , pseudogene 1161111423711114682Rat
11437278LOC108353076uncharacterized LOC108353076161112710411129496Rat
1590787LOC498588similar to Cofilin-1 (Cofilin, non-muscle isoform)161114400111144651Rat
68366Grid1glutamate ionotropic receptor delta type subunit 1161117083111932197Rat
1598050Rpl38-ps3ribosomal protein L38, pseudogene 3161121468211215001Rat
2325402Mir346microRNA 346161125005411250151Rat
1565573RGD1565573similar to 60S ribosomal protein L7161194542911946324Rat
11497444LOC108353079uncharacterized LOC108353079161209946912650565Rat
7540395LOC102553007ral guanine nucleotide dissociation stimulator-like161213118912133275Rat
1565329RGD1565329similar to hypothetical protein 4930474N05161214604512149423Rat
7522788LOC102553205ral guanine nucleotide dissociation stimulator-like161215469412156714Rat
9211190LOC103693904ral guanine nucleotide dissociation stimulator-like161216625312167985Rat
7654081LOC102553110ral guanine nucleotide dissociation stimulator-like161217305512177781Rat
1559804RGD1559804similar to hypothetical protein 4930474N05161219074212196263Rat
2322173LOC100363883hypothetical LOC100363883161221873612221386Rat
1563346RGD1563346similar to hypothetical protein 4930474N05161243861312441263Rat
11448581LOC108353077ral guanine nucleotide dissociation stimulator-like161250988912513017Rat
1560429RGD1560429similar to hypothetical protein 4930474N05161258820712592296Rat
7674954LOC102551632ral guanine nucleotide dissociation stimulator-like161260066012647003Rat
1559508RGD1559508similar to hypothetical protein 4930474N05161265920612663594Rat
11502729LOC108353078ral guanine nucleotide dissociation stimulator-like161266882112672853Rat
11389891LOC108353092uncharacterized LOC108353092161268637212689344Rat
1562508RGD1562508similar to hypothetical protein 4930474N05161270104912704441Rat
7591200LOC102552466uncharacterized LOC102552466161272332112725939Rat
6491640LOC100911649ral guanine nucleotide dissociation stimulator-like161273977312742080Rat
1592050LOC364518similar to non-POU domain containing, octamer-binding161274602612747294Rat
2318938LOC100362043rCG64252-like161275149312938455Rat
11409211LOC108353080uncharacterized LOC108353080161282563212852141Rat
1563356RGD1563356similar to hypothetical protein 4930474N05161295539012962810Rat
11389897LOC108353093ral guanine nucleotide dissociation stimulator-like161296542912968801Rat
1562641RGD1562641similar to hypothetical protein 4930474N05161297553312978717Rat
11519960LOC108348379uncharacterized LOC108348379161298603712988123Rat
1592584LOC685564similar to Ral guanine nucleotide dissociation stimulator (RalGEF) (RalGDS)161300065913005545Rat
1566067RGD1566067similar to hypothetical protein 4930474N05161301967613027323Rat
11357391LOC108348376ral guanine nucleotide dissociation stimulator-like161303460713036956Rat
7716637LOC102553538ral guanine nucleotide dissociation stimulator-like161304997213052383Rat
9142275LOC103693905uncharacterized LOC103693905161352710313549308Rat
6488346LOC100912197protein SET-like161364960513652526Rat
9220269LOC103693906uncharacterized LOC103693906161375734613779551Rat
6488495LOC100912224protein SET-like161383294713834753Rat
1590250LOC685718similar to tumor protein, translationally-controlled 1161395040113950949Rat
9322196LOC103693907uncharacterized LOC103693907161395233213960719Rat
1304626Ccser2coiled-coil serine-rich protein 2161409054714210512Rat
1309174Rgrretinal G protein coupled receptor161428632314300972Rat
628607Lrit1leucine-rich repeat, Ig-like and transmembrane domains 1161430680414314731Rat
1564668Lrit2leucine-rich repeat, Ig-like and transmembrane domains 2161431598014325053Rat
620420Cdhr1cadherin-related family member 1161432816114348049Rat
9432960LOC103693908uncharacterized LOC103693908161434814714353326Rat
1566160LOC290595hypothetical gene supported by AF152002161435299814360604Rat
11361265LOC108348380uncharacterized LOC108348380161435542214361211Rat
9450981LOC103693909uncharacterized LOC103693909161436122514364909Rat
11493527LOC108353094cytochrome c, somatic pseudogene161436330414363657Rat
1359301Ghitmgrowth hormone inducible transmembrane protein161437026914382647Rat
2324846LOC100363043chromosome 14 open reading frame 119-like161442096814421805Rat
1589073LOC685813hypothetical protein LOC685813161445913214460294Rat
1565661RGD1565661similar to RIKEN cDNA 3110001I22161459585114597297Rat
2324350LOC100362608peroxisomal 3,2-trans-enoyl-CoA isomerase-like161481284614814805Rat
11396184LOC108348381uncharacterized LOC108348381161502077315036885Rat
1586821LOC683469similar to RNA polymerase II transcription factor SIII subunit A2161510583815111585Rat
9472106LOC103693910uncharacterized LOC103693910161525365615293473Rat
7613786LOC102555898uncharacterized LOC102555898161529469415360711Rat
6501477LOC100909897uncharacterized LOC100909897161562155115627483Rat
7653369LOC102556044uncharacterized LOC102556044161569706415702651Rat
1559678Nrg3neuregulin 3161576303116932208Rat
11496471LOC108348383uncharacterized LOC108348383161693244316941210Rat
1564958RGD1564958similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12)161694854116950239Rat
1592049LOC364524similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)161714241417143539Rat
7673432LOC102546465uncharacterized LOC102546465161723178817241785Rat
7720136LOC102556133uncharacterized LOC102556133161724184317342652Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10660D16Mgh3224161066051310660736Ratregion
33848D16Mit21691650985845098704Ratregion
33848D16Mit21691650138025013922Ratregion
34689D16Mgh71431666553136655455Ratregion
37320D16Rat311991690555909055792Ratregion
37058D16Rat111881697381729738368Ratregion
34833D13Rat19169161274732912747527Ratregion
35831D16Rat221781642096544209831Ratregion
38370D16Rat44205161730920817309396Ratregion
40382D16Rat81153161698693016987076Ratregion
40498D16Rat1071331684359228436050Ratregion
40614D16Rat111141161063232310632475Ratregion
40634D16Rat832231696095249609738Ratregion
40724D16Rat872071641363554136567Ratregion
38784D16Rat512421641475084147729Ratregion
40060D16Rat861551657064245706572Ratregion
40142D16Rat80174161564926915649576Ratregion
38834D16Rat35281161746429317464539Ratregion
38858D16Rat54245161193697411937196Ratregion
39200D16Rat32125161196542411965556Ratregion
39272D16Rat382291693163249316554Ratregion
39272D16Rat382291693163249316457Ratregion
42020D16Arb44201666551846655571Ratregion
41412D16Rat85156161339069513390839Ratregion
43064D16Rat1232391690725499072772Ratregion
43065D16Rat122214161441221314412420Ratregion
41086D16Rat84248161295414512954494Ratregion
43099D17Rat171116161419604514196238Ratregion
60123D16Got14201161235716412357364Ratregion
60123D16Got14201161191081111911011Ratregion
60132D16Got972161035182610351897Ratregion
45307D16Got12271680972778097503Ratregion
45309D16Got32691642031044203372Ratregion
45310D16Got42971667516616751957Ratregion
45311D16Got61231637474053747527Ratregion
45312D16Rat1241451674943907494516Ratregion
45313D16Got911761676662587666433Ratregion
45315D16Got71831685051818505363Ratregion
45316D16Got81651689677498967914Ratregion
45317D16Got951321697663369766464Ratregion
45318D16Got10393161427510614275495Ratregion
45320D16Got13186161280155212801737Ratregion
45321D16Got16223161521513815215359Ratregion
45322D16Got15131161638138316381513Ratregion
45323D16Got1296161389315613893251Ratregion
60015D12Got381721683105398310710Ratregion
66387D16Mco34001646987434699195Ratregion
66394D16Mco9204161066052110660724Ratregion
67250D16Arb11202161066078910660990Ratregion
1358003D16Chm611901640659354066124Ratregion
1358004D16Chm492131641927614192973Ratregion
1358023D16Chm581991684525588452756Ratregion
1358034D16Chm632381632964513296688Ratregion
1358041D16Chm602611635249573525217Ratregion
1358042D16Chm662381634395253439762Ratregion
1631551D16Got1202791634642623464540Ratregion
1628013D16Got1141391662570456257183Ratregion
1628998D16Got1232861648651714865449Ratregion
1635324D16Got1091671669549716955135Ratregion
1637378D16Got1161081642136784213785Ratregion
1638438D16Got101238161665955316659790Ratregion
7206794RH12464116211638499413851561Ratregion
5035997PMC60063P1732161048966710490398Ratregion
7206542UniSTS:5470109091686833278684235Ratregion
5036324Grid1132161237808312378214Ratregion
5036324Grid1132161193172911931860Ratregion
5039310RH127633200161060950810609685Ratregion
5039082RH127502200161069514410695343Ratregion
5036893AU049538108161301371013014361Ratregion
5028733Cda0je041061644457824445887Ratregion
5031562AU0479163001688586188858917Ratregion
5026342RH1318381811687053778705557Ratregion
5026426RH1321661921670573077057498Ratregion
5034363D3S31152681644457754446042Ratregion
5026478RH13236601683189898319202Ratregion
5029223RH1439831131688029938803105Ratregion
5031892AU046803240161105779511058034Ratregion
5034658BI2751772091672666897266897Ratregion
5034714BI2822842161672545797254794Ratregion
5026778RH1334931801674716127471791Ratregion
5026784RH1335152191692591349259352Ratregion
5032305AI666536801676026267602705Ratregion
5032415AI604979851678185407818624Ratregion
5029893BI285092128161070232110702448Ratregion
5034936AI2287201311676507227650852Ratregion
5032765RH1352171811636355423635722Ratregion
5027469AI8746261171672949877295103Ratregion
5033053RH1374172131668991376899349Ratregion
502788120.MMHAP82FRG8.seq1761692834709283645Ratregion
5033215RH138007225161193450411934728Ratregion
5033337RH1384631521684683698468520Ratregion
5033495RH1390412101644454564445665Ratregion
5028364STS-L263181371696251729625308Ratregion
5052151RH94869183161069524810695430Ratregion
5053585RH1427341151677910917791205Ratregion
5053881RH1429041421681805868180727Ratregion
5056175RH1442261151684589328459046Ratregion
5056533RH1444332591640927614093019Ratregion
5054165RH1430681141677910927791205Ratregion
5054209RH1430931721643709004371071Ratregion
5054227RH143103215161145876511458979Ratregion
5052149RH94868171161069524510695415Ratregion
5059460AW5309621511665430276543177Ratregion
5055653RH1439251171639123623912478Ratregion
5054857RH1434651451672591787259322Ratregion
5054893RH1434851981670995317099728Ratregion
5054911RH143495120161108266111082780Ratregion
5055019RH1435591091697087159708823Ratregion
5058646BE102238150161100949811009647Ratregion
5056419RH144367139161575751815757656Ratregion
5052281MDB03321651644884684488632Ratregion
5057255AI5551462201661265716126790Ratregion
5052807RH142285197161075672410756920Ratregion
5050116RH133871218161087938710879604Ratregion
5059182BE102984150161029310810293257Ratregion
5053311RH142575137161411564814115784Ratregion
5053405RH1426291081682885298288636Ratregion
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5057618BE095712220161027822310278442Ratregion
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5044540RH1306621811682020698202249Ratregion
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5045176RH1310281861673451987345383Ratregion
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5049144RH133311193161437053714370729Ratregion
5047924RH1326072071673235737323779Ratregion
5047950RH1326221871672016677201853Ratregion
5049008RH1332331971673158777316073Ratregion
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5041120RH1286741851638672573867441Ratregion
5072704RH1370041531678568887857040Ratregion
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5076640RH1392931351667311726731306Ratregion
5075488RH1386231401681805888180727Ratregion
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5075928RH138878184161616673316166916Ratregion
5076724RH139342224161028667210286895Ratregion
5079622RH141108180161043199710432176Ratregion
5079912RH1412742121637550213755232Ratregion
5079942RH1412922041691724739172676Ratregion
5078976RH140662186161075706910757254Ratregion
5079012RH1406831961696971299697325Ratregion
5070572RH1345791851677843117784495Ratregion
5070738RH134676205161075612010756324Ratregion
5073022RH1371891801669647866964965Ratregion
5073190RH137292183161102842511028607Ratregion
5073582RH137519168161074858410748751Ratregion
5070844RH134738208161431424014314447Ratregion
5073128RH1372542201639358063936025Ratregion
5073420RH1374261941676273707627563Ratregion
5073526RH1374871901688807138880902Ratregion
5072430RH136844212161075660910756820Ratregion
5061676BE105815156161028781210287967Ratregion
5061754AI715562101161112712611127226Ratregion
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5065080AI0442382491666554376655685Ratregion
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5067288AU0478461811655056305505788Ratregion
5067300AU047839133161060891310609045Ratregion
5067562AU047670155161291266312912817Ratregion
5067820AU047516240161452134714521581Ratregion
5068842AU0468922701690574029057666Ratregion
5070149RH945001851661291556129339Ratregion
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5063570BI2899701591672916757291833Ratregion
5063808AW5352641531660548366054986Ratregion
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5062680AI716200143161435310514353247Ratregion
5062722AW534054158161055673810556895Ratregion
5060308AW5312142001687970698797268Ratregion
5060352AW5315151661667767826776947Ratregion
5065236BE121252210161696296116963170Ratregion
5065430BF412035215161602966416029878Ratregion
5062452BF3979061641678179687818131Ratregion
5064130BE1206411521684697158469866Ratregion
5060804AI1452022011644457144445914Ratregion
5060818BF3891952441660406026040845Ratregion
5064440BF399223192161026325810263449Ratregion
5066108BE116851156161106418211064337Ratregion
5062852BE1130391881670831107083297Ratregion
5062866BE1131071601644899854490144Ratregion
5062972BE1135261681661482716148438Ratregion
5064622BF3994591561644880424488197Ratregion
5061212BE1112152041660699856070188Ratregion
5066368AU048398155161083203910832193Ratregion
5066424AU048365185161149840411498588Ratregion
5061536BF3966532141644681704468383Ratregion
5061578BF396728148161409276814092915Ratregion
5084304AA8501481461675713817571526Ratregion
5086849BF4018301461690669889067133Ratregion
5086175AA8753182041682047798204982Ratregion
5087120BM3892401861691945639194748Ratregion
5087450PMC18246P17901661790346179823Ratregion
5082325BE1191951611642219324222092Ratregion
5087895UniSTS:143254153161237809112378243Ratregion
5087895UniSTS:143254153161193173711931889Ratregion
5088145Wnt5a1891644859924486180Ratregion
5083529BE100454170161075802010758189Ratregion
5088649AU0486951281675663527566479Ratregion
5088881AU0488251901644522114452400Ratregion
5090441AU0497522681692448389245189Ratregion
5090441AU0497522681692448389245105Ratregion
5081681BE1179941581666334766633633Ratregion
5084312AA8501651201668959376896056Ratregion
5088147Wnt5a2211644859924486212Ratregion
5085477BM391146193161281197712812169Ratregion
5085242AA799642126161437294914373074Ratregion
5090489AU049780134161158820911588342Ratregion
5088821AU0487911401680307258030864Ratregion
5088967AU0488752071653530765353282Ratregion
5084702AI17913396161104729111047386Ratregion
5082901BF390373157161120125711201413Ratregion
5085597AW5281802261643025544302779Ratregion
5085653BI2767121531665845246584676Ratregion
5086693AA8918351891670969337097121Ratregion
5086713BE1072941791674733657473543Ratregion
5081921BE1187561591670753117075469Ratregion
5084010AI0109831941683296578329850Ratregion
5507055UniSTS:2242761901666553276655516Ratregion
5500141UniSTS:2371612951696216869621980Ratregion
5500669RH136590222161075927110759492Ratregion
5500412GDB:5550190161492886214929090Ratregion
5500145UniSTS:2371502051678185417818745Ratregion
5500147UniSTS:237164110161075741310757522Ratregion
5503126LDB388161093165510932215Ratregion
5501522D2S3397621651264875127248Ratregion
5506577Wnt5a2341644754474476866Ratregion
5506595SH3BP5961674780667478161Ratregion
5501804MARC_13424-13425:1002294866:11021696296489630257Ratregion
5502772TKT1261666308246631062Ratregion
Position Markers

Flank 1: (D16Rat35)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21615,884,239 - 15,884,486 (+)MAPPER
Rnor_6.01617,464,293 - 17,464,539NCBI
Rnor_5.01617,347,173 - 17,347,419UniSTS
RGSC_v3.41616,359,278 - 16,359,525RGD
RGSC_v3.41616,359,279 - 16,359,525UniSTS
RGSC_v3.11616,359,276 - 16,359,523RGD
Celera1616,112,314 - 16,112,560UniSTS
SHRSP x BN Map165.64RGD
SHRSP x BN Map165.64UniSTS
Flank 2: (D16Chm63)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,851,471 - 2,851,709 (+)MAPPER
Rnor_6.0163,296,451 - 3,296,688NCBI
Rnor_5.0163,263,271 - 3,263,508UniSTS
RGSC_v3.4162,935,575 - 2,935,812UniSTS
Celera162,814,163 - 2,814,400UniSTS
Cytogenetic Map16p16UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613525217Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16110660736Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16124228366Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16127556253Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16127556253Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16127556253Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16131816439Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16133160624Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16134465490Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16141240937Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16141240937Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16141240957Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)1624459345244593Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1610900543439762Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)16109005486162972Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16134074146340741Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)16155018749247447Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)16155018763210301Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16155018763210301Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)16155018763210301Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)16155018763210301Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1615503303439525Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1615503303439525Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1615503303439525Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1615503303439525Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1615503303439525Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)1615503303439525Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1615503305013802Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16172829746728297Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16329668817464293Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16413635523105837Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16413635545905331Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16501380218360147Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16501380245905331Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16501380245905331Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16501380245905331Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16501380250013802Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16501380250169318Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16501380252144919Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16501380264012784Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16509870419398181Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161730939622744540Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 8 gender: male 1599557
qtl_general measurement method: selected males were weaned at 21 days of age then fed 2% NaCl diet starting from 35 days of age, at 14 weeks animals were decapitated, kidneys removed blotted and weighed 1599557
qtl_general software package used: ANOVA followed by Dunnett test in the SYSTAT 9 program 1599557
qtl_general has no effect on blood pressure, body weight, cardiac mass, heart right or left ventricle mass or aortic mass 1599557
qtl_map 13.4 Mb 1599557