Bmd46 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd46 (Bone mineral density QTL 46) Rattus norvegicus

Symbol: Bmd46
Name: Bone mineral density QTL 46
RGD ID: 2300185
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: volumetric bone mineral density   (CMO:0001553)    
LOD Score: 8.4
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2288,862,519 - 133,862,519RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0291,664,872 - 136,664,872RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02111,366,095 - 156,366,095RGD_MAPPER_PIPELINERnor5.0
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Linkage screen for BMD phenotypes in male and female COP and DA rat strains. Koller DL, etal., J Bone Miner Res. 2008 Sep;23(9):1382-8.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
6496250Tgap1l1GTPase activating protein testicular GAP1 like 128881243488947739Rat
2324778Txnl4al1thioredoxin-like 4A like 128893522189339701Rat
1593216Naa11-ps9N(alpha)-acetyltransferase 11, NatA catalytic subunit, pseudogene 928893544288937194Rat
9304207LOC103691505uncharacterized LOC10369150528897087588980334Rat
41266464LOC120101217U7 small nuclear RNA28934485789344915Rat
1588803Hspa8-ps32heat shock protein family A (Hsp70) member 8, pseudogene 3228939201989413186Rat
1588790Spic-ps1Spi-C transcription factor, pseudogene 128947153489495857Rat
41171310Trnaa-agc90transfer RNA alanine (anticodon AGC) 9029024024290240315Rat
1359558Tgap1GTPase activating protein testicular GAP129036277290436415Rat
1334307Or10ag62-ps1olfactory receptor family 10 subfamily AG member 62, pseudogene 129068544990686491Rat
2319570Eif1ax-ps1eukaryotic translation initiation factor 1A, X-linked, pseudogene 129074415190745318Rat
41099516LOC120101304small nucleolar RNA SNORA1729078950990789640Rat
2319479Vbp1l-ps1VHL binding protein 1 like, pseudogene 129098769290988247Rat
7561027LOC102553210uncharacterized LOC10255321029114641291174526Rat
9349712LOC103691511uncharacterized LOC10369151129127719591310476Rat
620295Snx16sorting nexin 1629133589691357622Rat
1564543Chmp4ccharged multivesicular body protein 4C29139172991428652Rat
40929196LOC120101172U6 spliceosomal RNA29143141591431521Rat
1309519Zfand1zinc finger AN1-type containing 129144449791457540Rat
1306036Slc10a5solute carrier family 10, member 529145754091458844Rat
69254Impa1inositol monophosphatase 129146278191484057Rat
40939054LOC120093158uncharacterized LOC12009315829150191891512455Rat
1565000Fabp12fatty acid binding protein 1229153956891554999Rat
69309Fabp4fatty acid binding protein 429158087991585567Rat
620285Fabp9fatty acid binding protein 929159184291595873Rat
41007682Rnu6-999RNA, U6 small nuclear 99929159791491598020Rat
41215037LOC120101159U6 spliceosomal RNA29160059691600702Rat
1585218Pmp2peripheral myelin protein 229161133491615252Rat
7544216LOC102546353uncharacterized LOC10254635329162840391653943Rat
70997Fabp5fatty acid binding protein 529176505691768716Rat
41317556LOC120100768uncharacterized LOC12010076829188775991893327Rat
620394Pag1phosphoprotein membrane anchor with glycosphingolipid microdomains 129193537892076937Rat
1563869Zfp704zinc finger protein 70429217180492356059Rat
40998579LOC120100770uncharacterized LOC12010077029219118092206415Rat
708377Zbtb10zinc finger and BTB domain containing 1029247525492509892Rat
41397126LOC120100771uncharacterized LOC12010077129259591192650648Rat
1306767Tpd52tumor protein D5229273536592816079Rat
1597461Mrps28mitochondrial ribosomal protein S2829282067692951302Rat
40942995LOC120101256small nucleolar RNA SNORA3829291670592916823Rat
1596973Tpm2-ps1tropomyosin 2, pseudogene 129297216292974217Rat
41372438LOC120101326small nucleolar RNA SNORA1729308335293083478Rat
621403Hey1hes-related family bHLH transcription factor with YRPW motif 129309660593100316Rat
1585007Dtd2-ps1D-aminoacyl-tRNA deacylase 2, pseudogene 129318698793187785Rat
68947Stmn2stathmin 229320469093252011Rat
11441417LOC108349981uncharacterized LOC10834998129355442093631719Rat
2321312Psmb6l1proteasome 20S subunit beta 6 like 129383391493834630Rat
11373688LOC108350177voltage-dependent anion-selective channel protein 1 pseudogene29388395993885694Rat
41084533Rpl34-ps5ribosomal protein L34, pseudogene 529391420293914762Rat
1593213Hdac1-ps11Histone deacetylase 1, pseudogene 1129391671293951253Rat
2322842Mrpl1-ps2mitochondrial ribosomal protein L1, pseudogene 229412396094124766Rat
11367342LOC108350232uncharacterized LOC10835023229413026794134883Rat
11374486LOC108350233glyceraldehyde-3-phosphate dehydrogenase pseudogene29416530994166476Rat
41058740LOC120100774uncharacterized LOC12010077429420871694235985Rat
2904Il7interleukin 729423521994280075Rat
1311970Zc2hc1azinc finger, C2HC-type containing 1A29428735294324655Rat
40938094LOC120101358small nucleolar RNA SNORA1729432602094326096Rat
621021PkiacAMP-dependent protein kinase inhibitor alpha29439886994473638Rat
1593212Tex2-ps1testis expressed 2, pseudogene 129472449594832001Rat
41007168Rnu6-33RNA, U6 small nuclear 3329486382594863931Rat
41121272LOC120101252small nucleolar RNA SNORA2/SNORA34 family29490730594907427Rat
7602661LOC102550295uncharacterized LOC10255029529498515695010035Rat
41054388LOC120101113U2 spliceosomal RNA29499570194995871Rat
41231648LOC120101221U7 small nuclear RNA29502419395024260Rat
41369417LOC120100775uncharacterized LOC12010077529504909495142066Rat
41035132LOC120101115U2 spliceosomal RNA29541335995413467Rat
7672274LOC102550696uncharacterized LOC10255069629546978795483680Rat
1564247Senp5-ps1SUMO specific peptidase 5, pseudogene 129550132695504553Rat
1598157Cbx3-ps5chromobox 3, pseudogene 529574235195742892Rat
11447753LOC108350179serine/arginine repetitive matrix protein 1 pseudogene29594844595950705Rat
41119034Pgk1-ps3phosphoglycerate kinase 1, pseudogene 329597267495974057Rat
61814Pex2peroxisomal biogenesis factor 229605038096072928Rat
1563022Zfhx4zinc finger homeobox 429622476396408245Rat
1585005Impdh1-ps1inosine monophosphate dehydrogenase 1, pseudogene 129641178396597628Rat
41275022LOC120101339small nucleolar RNA SNORA1729773968397739817Rat
2323618Paics-ps2phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 229775675197760325Rat
1310102Hnf4ghepatocyte nuclear factor 4, gamma29788577398036650Rat
1305234Ythdf3YTH N6-methyladenosine RNA binding protein F329835030498384608Rat
2320862Mrpl42-ps2mitochondrial ribosomal protein L42, pseudogene 229879353498794355Rat
1595487Tpm3-ps2tropomyosin 3, pseudogene 229897571098984032Rat
40992991LOC120101332small nucleolar RNA SNORA1729920127799201403Rat
41065891Hnrnpk-ps3heterogeneous nuclear ribonucleoprotein K, pseudogene 329955215599552870Rat
40958534Arpc1a-ps1actin related protein 2/3 complex, subunit 1A, pseudogene 129958158399583561Rat
11384865LOC108349983uncharacterized LOC10834998329958496799985951Rat
41016982Eif2s3-ps1eukaryotic translation initiation factor 2 subunit gamma, pseudogene 129967190399686497Rat
41338792LOC120101249small nucleolar RNA SNORA4429982670099826807Rat
40960807LOC120100778uncharacterized LOC1201007782100126406100138972Rat
2325576Mir124-2microRNA 124-22100134866100134974Rat
41074493Prpf38a-ps1pre-mRNA processing factor 38A, pseudogene 12100370140100371030Rat
1305451Bhlhe22basic helix-loop-helix family, member e222100486400100489510Rat
2483Cyp7b1cytochrome P450 family 7 subfamily B member 12100502791100669713Rat
2320718Rpl30l3ribosomal protein L30-like 32100718361100718702Rat
40957973LOC120101264small nucleolar RNA SNORA482101035275101035413Rat
41377065LOC120100569uncharacterized LOC1201005692101100447101112987Rat
1560393Armc1armadillo repeat containing 12101608171101652198Rat
1304936Mtfr1mitochondrial fission regulator 12101678331101713547Rat
68391Pde7aphosphodiesterase 7A2101714767101806853Rat
40995327Rab5c-ps1RAB5C, member RAS oncogene family, pseudogene 12101841519101843700Rat
9271705LOC103691515uncharacterized LOC1036915152101871139101906931Rat
1591779Rpl13-ps12ribosomal protein L13, pseudogene 122101949431101950909Rat
1562486Dnajc5bDnaJ heat shock protein family (Hsp40) member C5 beta2101973726102066275Rat
1562890RGD1562890RGD15628902102083834102087515Rat
11431841Trnar-acg1transfer RNA arginine (anticodon ACG) 12102087287102087359Rat
41251936Trnay-gua8transfer RNA tyrosine (anticodon GUA) 82102087698102087791Rat
11467539Trnay-gua2transfer RNA tyrosine (anticodon GUA) 22102088114102088203Rat
1306943Trim55tripartite motif-containing 552102100229102142173Rat
41050540LOC120100781uncharacterized LOC1201007812102111026102124407Rat
620505Crhcorticotropin releasing hormone2102143055102144919Rat
1590660Cnot8-ps1CCR4-NOT transcription complex, subunit 8, pseudogene 12102238885102239831Rat
41307645Rnu6-767RNA, U6 small nuclear 7672102241494102241597Rat
11423168LOC108350235succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial pseudogene2102277631102278359Rat
1584592Rrs1-ps9ribosome biogenesis regulator 1 homolog, pseudogene 92102363614102365829Rat
2387Cpceruloplasmin2102439433102498075Rat
1310548Hps3HPS3, biogenesis of lysosomal organelles complex 2 subunit 12102484574102527580Rat
1309031Hltfhelicase-like transcription factor2102549724102609492Rat
621785Gyg1glycogenin 12102611888102653916Rat
1583489Eif4g1-ps1eukaryotic translation initiation factor 4 gamma 1, pseudogene 12102692061102697515Rat
2390Cpa3carboxypeptidase A32102712483102744219Rat
2391Cpb1carboxypeptidase B12102755241102785628Rat
2071Agtr1bangiotensin II receptor, type 1b2102844969102920232Rat
9444651LOC103690087uncharacterized LOC1036900872102968007103010870Rat
41073287LOC120100782uncharacterized LOC1201007822103099138103118399Rat
40982245Med14-ps2mediator complex subunit 14, pseudogene 22103120850103132587Rat
41095331LOC120101114U2 spliceosomal RNA2103674535103674695Rat
9452260Rpl9l4ribosomal protein L9 like 42104075117104075724Rat
41047054LOC120100783uncharacterized LOC1201007832104142697104168971Rat
41311750LOC120101269small nucleolar RNA SNORA482104246207104246348Rat
2322289Cnn3-ps1calponin 3, pseudogene 12104303471104304322Rat
9251158LOC103691517uncharacterized LOC1036915172104425901104428062Rat
41127021LOC120100786uncharacterized LOC1201007862104579402104641521Rat
41163397Rpl36-ps10ribosomal protein L36, pseudogene2104583202104583569Rat
41366980LOC120100784spindlin-1-like2104591976104592840Rat
1560053Tbl1xr1TBL1X/Y related 12104788950104929055Rat
41053528Zfp296-ps1zinc finger protein 296, pseudogene 12104997253104998556Rat
41112660LOC120101351small nucleolar RNA SNORA172105199664105199775Rat
41186814Htd2hydroxyacyl-thioester dehydratase type 22105222958105223419Rat
1598354Hspa8-ps33heat shock protein family A (Hsp70) member 8, pseudogene 332105493828105495874Rat
41043122LOC120101398U2 spliceosomal RNA2105678120105678309Rat
1587056Mapk6-ps1mitogen-activated protein kinase 6, pseudogene 12106158901106167330Rat
7590540LOC102551358uncharacterized LOC1025513582106301790106305272Rat
1565147Naaladl2N-acetylated alpha-linked acidic dipeptidase-like 22106639146107992218Rat
41318849LOC120101275small nucleolar RNA SNORA482107574094107574240Rat
621117Nlgn1neuroligin 12108256236109181530Rat
11461857LOC108350212uncharacterized LOC1083502122108700309108722522Rat
41328011LOC120101250small nucleolar RNA SNORA42/SNORA80 family2108935155108935294Rat
41069193Gapdh-ps85Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 852109075012109075960Rat
41385681Cul2-ps1cullin 2, pseudogene 12109228805109231740Rat
41310748LOC120101266small nucleolar RNA SNORA482109290944109291087Rat
1563726Spata16spermatogenesis associated 162109485287109865665Rat
7515013LOC102555118uncharacterized LOC1025551182109923841109934955Rat
1308524Ect2epithelial cell transforming 22109975813110037911Rat
41199834LOC120101329small nucleolar RNA SNORA172109994487109994611Rat
1311104Nceh1neutral cholesterol ester hydrolase 12110074985110135592Rat
1589592Mrpl54-ps1mitochondrial ribosomal protein L54, pseudogene 12110138456110138965Rat
41026528LOC120100787uncharacterized LOC1201007872110168359110176379Rat
7552390LOC102555450uncharacterized LOC1025554502110180475110181932Rat
628734Tnfsf10TNF superfamily member 102110199835110227239Rat
9303217LOC103691520U1 small nuclear ribonucleoprotein C pseudogene2110249020110249711Rat
621397Ghsrgrowth hormone secretagogue receptor2110268489110271865Rat
1311673Fndc3bfibronectin type III domain containing 3B2110311439110617504Rat
6501927Cdk1-ps1cyclin-dependent kinase 1, pseudogene 12110685743110688183Rat
11461178LOC10835023760S ribosomal protein L17 pseudogene2110714287110716284Rat
1563109Tmem212transmembrane protein 2122110775950110813313Rat
7656055LOC102555566uncharacterized LOC1025555662110790193110795730Rat
3349Pld1phospholipase D12110849205111047304Rat
41193090LOC120100789uncharacterized LOC1201007892111022776111026560Rat
40969953Rpl15-ps12ribosomal protein L15, pseudogene 122111062794111073127Rat
41109826LOC120100792uncharacterized LOC1201007922111081877111107974Rat
41320266LOC120100791uncharacterized LOC1201007912111084532111099039Rat
1561817TnikTRAF2 and NCK interacting kinase2111184352111587993Rat
3705Slc2a2solute carrier family 2 member 22111609798111639930Rat
1306196Eif5a2eukaryotic translation initiation factor 5A22111728587111746087Rat
1309517Rpl22l1ribosomal protein L22 like 12111754687111756623Rat
1594375Slc7a14solute carrier family 7, member 142112065286112171319Rat
41175922LOC120101379U1 spliceosomal RNA2112190391112190553Rat
71081Cldn11claudin 112112207745112221050Rat
621399SkilSKI-like proto-oncogene2112247047112275176Rat
7608682LOC102547718uncharacterized LOC1025477182112309535112312861Rat
620961Prkciprotein kinase C, iota2112321919112382305Rat
1307998Phc3polyhomeotic homolog 32112408709112483719Rat
40951160LOC120100793uncharacterized LOC1201007932112464844112475848Rat
1560200Gpr160G protein-coupled receptor 1602112483364112563072Rat
1308862Sec62SEC62 homolog, preprotein translocation factor2112570810112598198Rat
1308931Samd7sterile alpha motif domain containing 72112623135112644269Rat
41014742LOC120100794uncharacterized LOC1201007942112624574112639790Rat
1583267Gpx2-ps1glutathione peroxidase 2, pseudogene 12112645776112646636Rat
41079209LOC120100795uncharacterized LOC1201007952112654970112670357Rat
1583237Eif4e-ps6eukaryotic translation initiation factor 4E, pseudogene 62112677634112680165Rat
41187843Hspa8-ps28heat shock protein family A (Hsp70) member 8, pseudogene 282112694872112700652Rat
1561499Lrrc31leucine rich repeat containing 312112702844112725431Rat
2323202Lrriq4leucine-rich repeats and IQ motif containing 42112729298112756338Rat
1565052Lrrc34leucine rich repeat containing 342112752294112774463Rat
1307889Mynnmyoneurin2112779654112797188Rat
11410912Trnav-aac1transfer RNA valine (anticodon AAC) 12112797857112797929Rat
1561457Actrt3actin-related protein T32112799038112801065Rat
727802Terctelomerase RNA component2112815654112816041Rat
11417786LOC108350239serine/arginine-rich splicing factor 7 pseudogene2112821804112822748Rat
40927050LOC120100572uncharacterized LOC1201005722112859750112862038Rat
40958933LOC120101297small nucleolar RNA SNORA172112863681112863811Rat
1310997MecomMDS1 and EVI1 complex locus2112909353113464583Rat
1307225Egfem1EGF-like and EMI domain containing 12113721236114324547Rat
2325355Mir551bmicroRNA 551b2113989203113989300Rat
631398Kcnmb2potassium calcium-activated channel subfamily M regulatory beta subunit 22114670027114975374Rat
40930350LOC120101259small nucleolar RNA SNORA482115082698115082841Rat
620134Zmat3zinc finger, matrin type 32115106046115136888Rat
620916Pik3caphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha2115175275115249034Rat
1311852Kcnmb3potassium calcium-activated channel subfamily M regulatory beta subunit 32115255788115270142Rat
1585689Zfp639zinc finger protein 6392115292431115305798Rat
621460Mfn1mitofusin 12115313380115359651Rat
1359321Gnb4G protein subunit beta 42115360746115400680Rat
7733168LOC102546477uncharacterized LOC1025464772115436848115439292Rat
41174350LOC120100797uncharacterized LOC1201007972115454205115463343Rat
41403567LOC120101270small nucleolar RNA SNORA482115455806115455946Rat
1307747Actl6aactin-like 6A2115492374115508401Rat
1307531Mrpl47mitochondrial ribosomal protein L472115507842115520093Rat
1305909Ndufb5NADH:ubiquinone oxidoreductase subunit B52115519248115533589Rat
40931824LOC120101231small nucleolar RNA SNORA702115536406115536531Rat
1306044Usp13ubiquitin specific peptidase 132115576912115689153Rat
708407Pex5lperoxisomal biogenesis factor 5-like2115694868115908365Rat
41095389LOC120100799uncharacterized LOC1201007992115921265115935617Rat
41055679LOC120101273small nucleolar RNA SNORA482116165324116165449Rat
2323670Rsrc2-ps1arginine and serine rich coiled-coil 2, pseudogene 12116424180116425501Rat
1310045Ttc14tetratricopeptide repeat domain 142116653543116665072Rat
1306277Ccdc39coiled-coil domain 39 molecular ruler complex subunit2116665651116703354Rat
11425228LOC108350240uncharacterized LOC1083502402116798678116804305Rat
41198720LOC120101341small nucleolar RNA SNORA172116803654116803785Rat
41010119LOC120100800uncharacterized LOC1201008002116825354116880012Rat
1311733Fxr1FMR1 autosomal homolog 12116884167116937590Rat
1560220Dnajc19DnaJ heat shock protein family (Hsp40) member C192116923272116945312Rat
9202401LOC103691527uncharacterized LOC1036915272116967994117589148Rat
41021129Ppid-ps11peptidylprolyl isomerase D, pseudogene 112117022912117024754Rat
11453452LOC108349992uncharacterized LOC1083499922117170935117210196Rat
41289236LOC120100802uncharacterized LOC1201008022117368023117386859Rat
1588992Hnrnpa3l1heterogeneous nuclear ribonucleoprotein A3 like 12117500942117501994Rat
1565646Sox2SRY-box transcription factor 22117536929117539340Rat
11438648LOC108350241uncharacterized LOC1083502412117604873117615829Rat
41183565LOC120100803uncharacterized LOC1201008032117717939117769039Rat
11440273LOC108349993uncharacterized LOC1083499932117917466117923638Rat
41366851Rbmxl1-ps1Rbmx like 1, pseudogene 12118217422118225582Rat
6504224Pramel7-ps1preferentially expressed antigen in melanoma-like 7, pseudogene 12118236522118237038Rat
2323451Rnps1-ps2RNA binding protein with serine rich domain 1, pseudogene 22118373339118374187Rat
41327895Gabarapl2-ps3GABA type A receptor associated protein like 2, pseudogene 32118499300118500311Rat
41355076Rnu6-1158RNA, U6 small nuclear 11582118570694118570798Rat
1561719Atp11bATPase phospholipid transporting 11B (putative)2118585348118691076Rat
1309668Dcun1d1defective in cullin neddylation 1 domain containing 12118721275118772606Rat
1310615Mccc1methylcrotonyl-CoA carboxylase subunit 12118799147118851181Rat
1585492Ccdc144bcoiled-coil domain containing 144B2118862790118924638Rat
727973Acad9acyl-CoA dehydrogenase family, member 92118943170118966150Rat
2323100Zfp267zinc finger protein 2672119017280119035885Rat
41098583Surf6-ps3surfeit 6, pseudogene 32119017398119027282Rat
1304917Arslarylsulfatase L2119038803119047579Rat
728380Qrfprpyroglutamylated RFamide peptide receptor2119053083119096864Rat
41370461Pou5f1-ps3POU class 5 homeobox 1, pseudogene 32119087448119088134Rat
2120Anxa5annexin A52119314007119344703Rat
11384727Smim43small integral membrane protein 432119380454119385966Rat
1307888Exosc9exosome component 92119416028119426981Rat
621059Ccna2cyclin A22119427239119433645Rat
1309264Bbs7Bardet-Biedl syndrome 72119434760119474665Rat
61973Trpc3transient receptor potential cation channel, subfamily C, member 32119481313119619333Rat
1593209Rpl7-ps22ribosomal protein L7, pseudogene 222119579381119580218Rat
1307100Bltp1bridge-like lipid transfer protein family member 12119708114119924697Rat
40993430Thumpd1-ps1THUMP domain containing 1, pseudogene 12119841868119842977Rat
1359309Adad1adenosine deaminase domain containing 12119948809120005920Rat
620047Il2interleukin 22120004862120009566Rat
1307384Il21interleukin 212120117105120127012Rat
1586489Cetn4centrin 42120199951120203311Rat
1561608Bbs12Bardet-Biedl syndrome 122120203396120221024Rat
2609Fgf2fibroblast growth factor 22120236328120290673Rat
621356Nudt6nudix hydrolase 62120289908120306197Rat
1310478Afg2aAFG2 AAA ATPase homolog A2120306417120497707Rat
41320820LOC120101257small nucleolar RNA SNORA512120460702120460834Rat
11433166LOC10835024260S ribosomal protein L7a pseudogene2120515068120515888Rat
1309293Spry1sprouty RTK signaling antagonist 12120557256120561917Rat
41101418LOC120101158U6 spliceosomal RNA2120627911120628017Rat
11469315LOC108349999glyceraldehyde-3-phosphate dehydrogenase pseudogene2120637580120646553Rat
1592058Lgals9-ps1galectin 9, pseudogene 12120683705120684762Rat
11513955LOC108350243uncharacterized LOC1083502432120709996120711737Rat
41115179LOC120101292small nucleolar RNA SNORA172120737785120737921Rat
11356258LOC10835000060S ribosomal protein L26 pseudogene2120769981120770431Rat
1585003Phgdh-ps5phosphoglycerate dehydrogenase, pseudogene 52120910507120917522Rat
41183015LOC120101309small nucleolar RNA SNORA172120976196120976326Rat
41045573LOC120100575uncharacterized LOC1201005752121117806121124162Rat
11379162LOC108350184keratin-associated protein 4-4-like2121142630121143406Rat
11373430Rps6-ps3ribosomal protein S6, pseudogene 32121167632121248902Rat
1564378Rpl23al3ribosomal protein L23A like 32121429593121434236Rat
1311665Ankrd50ankyrin repeat domain containing 502121466275121500758Rat
9384455LOC103691533uncharacterized LOC1036915332121577718121606017Rat
41284427LOC120100576uncharacterized LOC1201005762121636924121653275Rat
1564291Fat4FAT atypical cadherin 42121927266122056700Rat
1582963Eif4a1-ps6eukaryotic translation initiation factor 4A1, pseudogene 62122325531122326261Rat
1593207Phgdh-ps7phosphoglycerate dehydrogenase, pseudogene 72122368911122370490Rat
41143528LOC120101334small nucleolar RNA SNORA172122823020122823149Rat
2322140Nt5c2-ps35'-nucleotidase, cytosolic II, pseudogene 32123256219123257818Rat
9245979LOC103695116serine/arginine-rich splicing factor 3 pseudogene2123371369123371904Rat
7573616LOC102550593uncharacterized LOC1025505932123397907123402098Rat
41325496LOC120100807uncharacterized LOC1201008072123403964123505271Rat
1309446Intuinturned planar cell polarity protein2123600972123685331Rat
2321897Mynn-ps1myoneurin, pseudogene 12123685457123688592Rat
1596195Slc25a31solute carrier family 25 member 312123695387123711275Rat
1306528Hspa4lheat shock protein family A (Hsp70) member 4 like2123740384123793088Rat
1305390Plk4polo-like kinase 42123802527123820942Rat
1310132Mfsd8major facilitator superfamily domain containing 82123822042123847808Rat
41373813Fundc2-ps1FUN14 domain containing 2, pseudogene 12123853238123855281Rat
1563987Abhd18abhydrolase domain containing 182123872299123920987Rat
1359533Fundc2bFUN14 domain containing 2B2123877836123880083Rat
1307509Larp1bLa ribonucleoprotein 1B2123936057123969254Rat
1565989Larp1blLa ribonucleoprotein 1B like2123969408124031645Rat
1308804Pgrmc2progesterone receptor membrane component 22124068257124084155Rat
41163150LOC120100809histone H3.v1-like2124209284124215591Rat
41397384LOC120100577uncharacterized LOC1201005772124222575124229453Rat
41242725LOC120100810uncharacterized LOC1201008102124384875124400228Rat
41105572LOC120101226small nucleolar RNA SNORD222124425037124425161Rat
7516893LOC102553773uncharacterized LOC1025537732124459201124469318Rat
1306920Jade1jade family PHD finger 12124543233124596361Rat
628721Sclt1sodium channel and clathrin linker 12124605445124763964Rat
1359508C2h4orf33similar to human chromosome 4 open reading frame 332124764263124830001Rat
41012974LOC12010057840S ribosomal protein S21-like2125345379125346298Rat
40974057LOC120100811uncharacterized LOC1201008112125776559125802118Rat
1563847Kpna1-ps5karyopherin subunit alpha 1, pseudogene 52125884647125886767Rat
1559967Pkm-ps6pyruvate kinase M1/2, pseudogene 62126044233126045499Rat
2321697Spryd7-ps1SPRY domain containing protein 7, pseudogene 12126157686126158233Rat
6486316Hnrnpf-ps1heterogeneous nuclear ribonucleoprotein F, pseudogene 12126606819126618488Rat
1593483Wdr61-ps1WD repeat domain 61, pseudogene 12127443608127444600Rat
2321502Ewsr1-ps1EWS RNA-binding protein 12127988248127990520Rat
1592323Riox2-ps6ribosomal oxygenase 2, pseudogene 62128448551128451089Rat
41091330LOC120100812uncharacterized LOC1201008122128494120128525138Rat
1565811Pcdh10protocadherin 102128617212128683354Rat
2321898Ran-ps3RAN, member RAS oncogene family, pseudogene 32128705723128707749Rat
1593206Aldoa-ps6aldolase, fructose-bisphosphate A, pseudogene 62128740774128742056Rat
1587345Hspa8-ps18heat shock protein family A (Hsp70) member 8, pseudogene 182129109508129111050Rat
41068108LOC120101285small nucleolar RNA SNORA172129578379129578510Rat
1591091Dmtf1-ps1cyclin D binding myb-like transcription factor 1, pseudogene 12129668961129671126Rat
1559517Pabpc4lpoly(A) binding protein, cytoplasmic 4-like2129807755129809745Rat
9191676LOC103691547histone H3-like2129998520129998912Rat
41307398LOC120100579uncharacterized LOC1201005792130410255130411375Rat
41396004LOC120101335small nucleolar RNA SNORA172130664190130664323Rat
41206294LOC120101267small nucleolar RNA SNORA482130780074130780217Rat
1563562Tgap1l11GTPase activating protein testicular GAP1 like 112131029791131092039Rat
9251686Tgap1l3GTPase activating protein testicular GAP1 like 32131121784131190097Rat
1595598Tgap1l8GTPase activating protein testicular GAP1 like 82131215856131280563Rat
7516215Tgap1l12GTPase activating protein testicular GAP1 like 122131292205131645662Rat
1589949Tgap1l9GTPase activating protein testicular GAP1 like 92131691178131736078Rat
41164989LOC120101107U2 spliceosomal RNA2131736220131736350Rat
1564926Tgap1l6GTPase activating protein testicular GAP1 like 62131750076131797706Rat
1589926Phb1-ps17prohibitin 1, pseudogene 172131812324131822672Rat
11465045LOC10835024760S ribosomal protein L35 pseudogene2132271714132272066Rat
9101027Rpl31l11ribosomal protein L31 like 112132272163132272636Rat
1593205Hdac1-ps19Histone deacetylase 1, pseudogene 192132478743132480642Rat
1307595Erhl1ERH, mRNA splicing and mitosis factor like 12132570276132573582Rat
1593204Hspa8-ps8heat shock protein family A (Hsp70) member 8, pseudogene 82133005896133007805Rat
2321698Pacrgl-ps1parkin coregulated like, pseudogene 12133152880133154412Rat
7642297LOC102550446rho GTPase-activating protein 20-like2133296630133407312Rat
41233265LOC120100814rho GTPase-activating protein 20-like2133422096133454718Rat
1359174Tgap1l5GTPase activating protein testicular GAP1 like 52133471326133509594Rat
40975337LOC120100815rho GTPase-activating protein 20-like2133520135133559812Rat
41092931LOC120093152rho GTPase-activating protein 20-like2133570229133603645Rat
1305870Pcdh18protocadherin 182133831996133845992Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10121D2Mco341982102854285102854485Ratregion
10122D2Mco352912102853080102853371Ratregion
10387D2Mgh261382102771168102771306Ratregion
34383D2Mgh51162103794961103795077Ratregion
33555D2Mit261322112844451112844585Ratregion
33674D2Mit171902106741551106741741Ratregion
33745D2Mit181832105378114105378297Ratregion
33765D2Mit352642127469220127469484Ratregion
35995D2Rat282712104814877104815148Ratregion
36201D2Rat331802113721113113721293Ratregion
37332D2Rat1041442109095976109096120Ratregion
35222D2Rat3021632122846256122846419Ratregion
36918D2Rat2416529822659898226760Ratregion
37016D2Rat301562112103657112103813Ratregion
37122D2Rat1172022132558903132559105Ratregion
37146D2Rat792022120958038120958240Ratregion
37682D2Rat1021002121121975121122075Ratregion
37816D2Rat14521729044253590442742Ratregion
37952D2Rat1231572109366814109366971Ratregion
37990D2Rat1771902105378063105378253Ratregion
36478D2Rat311522106573059106573211Ratregion
36578D2Rat782672115404101115404368Ratregion
34807D2Rat291302105561590105561720Ratregion
34882D2Rat771722111263994111264166Ratregion
35066D2Rat801412122378211122378352Ratregion
35148D2Rat2713929435940794359546Ratregion
35729D2Rat2517529923679099236961Ratregion
35929D2Rat12213729634548996345626Ratregion
39816D2Rat3001712117484680117484853Ratregion
39820D2Rat2552162123943856123944072Ratregion
38256D2Rat1152292130923272130923501Ratregion
38266D2Rat1362092117951309117951518Ratregion
38362D2Rat1611482114837527114837675Ratregion
38386D2Rat1582032121602339121602542Ratregion
40462D2Rat2801452111362447111362592Ratregion
40466D2Rat3031672127460743127460910Ratregion
40612D2Rat2781162102104121102104430Ratregion
40612D2Rat2781162102104314102104430Ratregion
38488D2Rat1602542110560547110560803Ratregion
38592D2Rat11322429154614191546365Ratregion
38610D2Rat1432642103518774103519040Ratregion
38626D2Rat1711502112456140112456288Ratregion
38726D2Rat16316129032856090328721Ratregion
38960D2Rat932052129164097129164302Ratregion
38962D2Rat961492114587899114588046Ratregion
39090D2Rat1802442117776691117776935Ratregion
39164D2Rat1592002121850141121850343Ratregion
39242D2Rat982152126966230126966445Ratregion
39274D2Rat1402532104265184104265437Ratregion
39388D2Rat21320429511671195116915Ratregion
42288D2Rat33024229175339291753616Ratregion
41184D2Rat2191722132082925132083097Ratregion
41358D2Rat2171392118111229118111368Ratregion
41464D2Rat2152962103309145103309441Ratregion
41484D2Rat2181142120346103120346217Ratregion
42586D2Rat33221529415028194150482Ratregion
42587D2Rat32922229991151999911741Ratregion
42590D2Rat3352392109002666109002905Ratregion
42593D2Rat3371422114141640114141782Ratregion
42594D2Rat3382342114615241114615477Ratregion
41038D2Rat21411529265932992659444Ratregion
41670D2Rat3012052122603934122604139Ratregion
41744D2Rat27915529907464499074799Ratregion
41838D2Rat3722452121181567121181814Ratregion
41894D2Rat33113129895627398956398Ratregion
44590D9Got441612104935118104935281Ratregion
43517D2Got6815829175339291753550Ratregion
43518D2Got7314529174503291745177Ratregion
43519D2Got6415129302661593026768Ratregion
43521D2Got7018729375581993756006Ratregion
43524D3Got1152022120490082120490284Ratregion
43525D2Got671782115536109115536287Ratregion
43526D2Got741402122116180122116320Ratregion
43527D2Got5316729631930696319473Ratregion
43529D2Got5817129468053794680708Ratregion
43530D2Got811432125071448125071591Ratregion
43531D2Got892022131503149131503351Ratregion
60796D2Wox61762112166180112166356Ratregion
60326D2Got491862105215501105215689Ratregion
60327D2Got502242106426481106426705Ratregion
60329D2Got521162101077038101078259Ratregion
60329D2Got521162101078143101078259Ratregion
60330D2Got5519529775616897756365Ratregion
60331D2Got5627029810354898103818Ratregion
60332D2Got5717129792988597930056Ratregion
60335D2Got622332112291717112291950Ratregion
60337D2Got662462112187566112187814Ratregion
60338D2Got692512111809778111810029Ratregion
60339D2Got751452118768579118768724Ratregion
60340D2Got761992121862427121862626Ratregion
60341D2Got771772119519366119519543Ratregion
60342D2Got782672119686278119686545Ratregion
60343D2Got792622109776051109776313Ratregion
60346D2Got821602121165735121165895Ratregion
60347D2Got831942122263863122264057Ratregion
60348D2Got841222129127491129127613Ratregion
60349D2Got852852128982454128982739Ratregion
60353D2Got902022130930745130930947Ratregion
60354D2Got921552133234754133234909Ratregion
60312D2Got1841362107565811107565947Ratregion
60313D2Got1871162111190665111190781Ratregion
60314D2Got19625129841090298411157Ratregion
625765D2Got601352100773874100774009Ratregion
66482D2Uia1621029978953899789748Ratregion
66650D2Mco111252116140115116140240Ratregion
66657D2Mco164192102202080102202499Ratregion
66731D2Mco362402107641164107641424Ratregion
67324D2Arb341742104145423104145597Ratregion
67325D2Arb353022104141534104141838Ratregion
67770D2Uwm613529823746598237600Ratregion
67780D2Uwm81742114699203114699377Ratregion
67803D2Uwm201262123231171123231297Ratregion
1630140D2Ulb102111388724111389025Ratregion
1630697D2Got3292012120671230120671431Ratregion
1630943D2Got4082772111144022111144299Ratregion
1631772D2Uia1810529368481193684916Ratregion
1628349D2Wox4822429159359791593821Ratregion
1629907D2Ulb1821329374284993743062Ratregion
1629982D2Got3981412111545367111545506Ratregion
1638728D2Got32322729142947191429834Ratregion
1638728D2Got32322729142960791429834Ratregion
1640916D2Got4361412124102336124102477Ratregion
1641164D2Got4351792126347435126347612Ratregion
1633103D2Got3301382122601409122601547Ratregion
1639967D2Got41621829627894296279160Ratregion
1640396D2Got4231512123258917123259068Ratregion
1640406D2Got4171372123340252123340389Ratregion
1635087D2Ulb910829187251491872622Ratregion
1636528D2Got33213129712193897121971Ratregion
1636630D2Wox571572115111296115111453Ratregion
1636863D2Got3281772112776089112776268Ratregion
1638455D2Got42716429434871394348877Ratregion
1638470D2Wox552352102438708102438945Ratregion
1633857D2Got39129929822572398226023Ratregion
1633981D2Cebr211029302526093025370Ratregion
1634150D2Wox541802102437904102438084Ratregion
1634240D2Got3731852110039882110040069Ratregion
1634455D2Got4001482114421482114421630Ratregion
1634762D2Got3271952104661421104661616Ratregion
7206720D3Mit271852113202571113202656Ratregion
7192218Sox23302117538902117539232Ratregion
7193060Sox21312117537801117537932Ratregion
7364905rs106982173029335364293353642Ratregion
7206294Spic60228949525389495855Ratregion
7205884UniSTS:2570812592115218994115219253Ratregion
7205884UniSTS:2570812592115218994115219253Ratregion
7205886px-34a8029561454495614717Ratregion
7206792RH1243264492104592140104592589Ratregion
5035771PMC165967P743329564014295640575Ratregion
5035957PMC317048P17492119429240119429989Ratregion
5038672BB21001212229940220199402323Ratregion
5038754RH1273131912102608853102609044Ratregion
5038960RH1274321902115359236115359426Ratregion
5036217UniSTS:1423991432113402338113402481Ratregion
5036219D3Nds641372119595428119595565Ratregion
5036366UniSTS:143556702120009437120009507Ratregion
5036370Il716529427864694278811Ratregion
5036510Stk181912123808409123808600Ratregion
5036573AU0484731632114191426114191466Ratregion
5036757AU0491061562110252246110252402Ratregion
5035526C130041O22Rik39129622746996227860Ratregion
5035608D8S1385E11029320479093204900Ratregion
5035633A001Y0410729838443498384541Ratregion
5035697D6S15606032124366502124367105Ratregion
5033853RH1403631792123622939123623118Ratregion
5028741RH4595015429622758096227734Ratregion
5031524AU04804523429042244190422672Ratregion
5031524AU04804523429042244190422692Ratregion
5028845RH1425491122112816146112816258Ratregion
5034422BE1177721592109996795109996954Ratregion
5029201RH1439011972100134296100134493Ratregion
5031896AU0467879029856139898561488Ratregion
5029365RH1445202772104142717104142994Ratregion
5032105RH944181702120291028120291198Ratregion
5034814AA9429791792121466298121466477Ratregion
5029543BG3754471362101255007101255143Ratregion
5032253AU017667902102612002102612092Ratregion
5032349AI4514111222111580792111580914Ratregion
5035446BQ19355720229554450095544702Ratregion
5035466AW5320872112118724204118724415Ratregion
5027127U859332192107641164107641454Ratregion
5027145D1S28315512115113244115113795Ratregion
5029863AW5308731572118258177118258334Ratregion
5034884AI16976113329788598897886121Ratregion
5034946AI1717421092115689107115689208Ratregion
5034980Agtr1a702102846542102846612Ratregion
5029937BF3946482242108497744108497968Ratregion
5029961BF3882361502116671904116672054Ratregion
5030209AW5320751512119031693119031844Ratregion
5032897RH1368881882118965805118965993Ratregion
5024974BB2028241112104106876104106987Ratregion
5030251BE11149516029604975596049915Ratregion
5030305BF3967351852118755658118755843Ratregion
5030343AI7152961992118689951118690150Ratregion
5030373BI2942582502124553416124553666Ratregion
5033109RH1376302072104882869104883076Ratregion
5027769RH946701632100503471100503635Ratregion
5027811RH948359029427631194276401Ratregion
5033197RH1379411362102486358102486494Ratregion
5030617BE1137071582107577282107577441Ratregion
5030617BE1137071582107577282107577441Ratregion
5025534RH1286962002102611924102612124Ratregion
5028105X941271862117538619117538805Ratregion
5028230D3Mit168922117527566117527658Ratregion
5030789BE1200441962115842191115842387Ratregion
5025762RH1295632002124067428124067628Ratregion
5028236D3Mit295862121968795121968881Ratregion
5033765RH1400402132104924658104924871Ratregion
5053727RH1428161312115532097115532228Ratregion
5056399RH1443562832120304208120304491Ratregion
5056703RH1445311552112654094112654249Ratregion
5051991RH947762842111639437111639721Ratregion
5052093RH948361052102712656102712761Ratregion
5054323RH1431581632115685235115685398Ratregion
5055401RH1437804722115301198115301670Ratregion
5055457RH1438121082112322042112322150Ratregion
5054679RH14336310529940181599401920Ratregion
5055719RH14396326029840945098409710Ratregion
5057896BE1016801842102519250102519434Ratregion
5057988BF3864141512111541311111541462Ratregion
5055175RH14364914629148612591486271Ratregion
5058742BF3870161872114246684114246871Ratregion
5058792BE1024481532112171163112171316Ratregion
5059630BF3940481332112800826112800959Ratregion
505218118.MMHAP88FLF3.seq1932122934451122934644Ratregion
5055477RH1438241342112624345112624479Ratregion
5055477RH1438241342112624345112624508Ratregion
5052569AI31466811929967240499672523Ratregion
5055825RH1440241692128662630128662799Ratregion
5055829RH1440261042119481538119481642Ratregion
5052897RH14233715529207665392076808Ratregion
5059964BF3882391682117571992117572160Ratregion
5058242BF3868952132120051216120051429Ratregion
5058352AI1369051972104788975104789172Ratregion
5050432RH1340531822116671393116671575Ratregion
5053319RH1425794522118800899118801351Ratregion
5050762RH13424418529151178691511971Ratregion
5049918RH1337571832115108117115108300Ratregion
5054151RH1430592542112815731112815985Ratregion
5052789RH1422741542111581778111581932Ratregion
5051296RH1345522012102755277102755478Ratregion
5051346AW06122414729285585592856002Ratregion
5053357RH1426021382101610125101610263Ratregion
5050970RH1343632132115688358115688571Ratregion
5051088RH1344321852119924317119924502Ratregion
5044102RH1304112132118722390118722646Ratregion
5044102RH1304112132118722433118722646Ratregion
5044522RH1306521962120683421120683618Ratregion
5044686RH1307461812115508407115508588Ratregion
5044740RH1307771832123820517123820700Ratregion
5041068RH1286442082112207883112208091Ratregion
5041296RH12877520929176510191765310Ratregion
5043540RH13008419129295105792951248Ratregion
5043710RH1301821862123919886123920072Ratregion
5043788RH1302271952116943105116944207Ratregion
5045008RH13093021029428031394280523Ratregion
5045628RH13128719329145406391454256Ratregion
5045672RH1313122062120214050120214256Ratregion
5045816RH1313952142110135357110135571Ratregion
5048702RH1330562042115436870115437074Ratregion
5044356RH1305561902126502603126502793Ratregion
5046478RH1317762152110107974110108189Ratregion
5046554RH13182021129427888994279100Ratregion
5047494RH13236018129304474193044922Ratregion
5046100RH1315582042110116412110116616Ratregion
5048998RH1332272202122047969122048189Ratregion
5049478RH1335041952115360839115361034Ratregion
5048244RH1327911802118772548118772728Ratregion
5048262RH1328011802112779844112780024Ratregion
5047254RH1322221942116932491116932685Ratregion
5039772RH1278981952111639700111639895Ratregion
5039830RH12793120929151212091512329Ratregion
5042452RH12944220629439905394399259Ratregion
5042896RH1297091882119549285119549473Ratregion
5039426RH12769921929066991490670133Ratregion
5041944RH12914918129439890894399089Ratregion
5043106RH1298362032119314032119314235Ratregion
7192186Sox21852117538991117539176Ratregion
5042738RH1296162182102611995102612213Ratregion
5040464RH12829819429148362491483818Ratregion
7193026Sox22042117537481117537685Ratregion
5040564RH1283562012119426093119426294Ratregion
5043014RH12977918829439896794400249Ratregion
5041466RH12887318629158416991585447Ratregion
5075220RH1384681342128621540128621674Ratregion
5073828RH1376621272102642592102642719Ratregion
5072414RH1368352472119035477119035724Ratregion
5075890RH1388568972115682953115683850Ratregion
5076006RH1389232022115697444115697646Ratregion
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5076350RH1391241642113213986113214150Ratregion
5074496RH1380502072119055188119055395Ratregion
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5074742RH1381921982115887155115887353Ratregion
5077276RH1396632162111046730111046946Ratregion
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5076068RH13896017729428761394287790Ratregion
5075112RH13840518829161294891614449Ratregion
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5076620RH13928122629320330093203526Ratregion
5076410RH1391591202102141308102141428Ratregion
5077418RH13974518229940246299402644Ratregion
5077462RH13977018129428761394287794Ratregion
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5079022RH1406892142104924179104924393Ratregion
5078512RH1403851902118721709118721899Ratregion
5070816RH1347221832115357745115357928Ratregion
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5080492RH1416102032115246391115246594Ratregion
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5073094RH1372331852112571223112571408Ratregion
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5071952RH1353801932117340522117340715Ratregion
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5072214RH1367192162111745649111745865Ratregion
5072238RH1367331192120422221120422340Ratregion
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5063474BI3018991862115166128115166314Ratregion
5064966BE1087941602107579316107579475Ratregion
5065012BF4054701982111540873111541071Ratregion
5066688AU04820920929448336194483570Ratregion
5066912AU0480762592125801154125801413Ratregion
5067032AU0480061172105571532105571649Ratregion
5067472AU0477231572127104168127104325Ratregion
5067724AU04757420429364029993640503Ratregion
5068062AU0473701512102560975102561122Ratregion
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5068356AU04719616829276243092762600Ratregion
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5068582AU0470591462121192235121192381Ratregion
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5069556AU0464181262123588446123588567Ratregion
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5070227RH945451822119314025119314207Ratregion
5070342AI504870832102755452102755535Ratregion
5070344AU0676481202115694987115695107Ratregion
5069134AU0467022242109214412109214636Ratregion
5069718AU0463153002129163927129164227Ratregion
5070540RH1345608062119427610119428416Ratregion
5062018AI45412618829320485193205039Ratregion
5062124BE1062332032117531810117532013Ratregion
5060510BE1102441592115686534115686693Ratregion
5062310BI28866720529216106192161266Ratregion
5062766AW53437915829247653292476690Ratregion
5064410BI3021391772115009770115009947Ratregion
5060258AI11183420329212389392124096Ratregion
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5063758AI0438019229606530596065397Ratregion
5065198BE1211341962115706608115706804Ratregion
5065296AA963575972115248821115248918Ratregion
5064312BF3990711412115249365115249506Ratregion
5066096BE1168262052119496187119496392Ratregion
5061068AW5320791752104928100104928275Ratregion
5061164BE1110291692124063888124064057Ratregion
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5066190BF4075071212112905204112905325Ratregion
5061316BI29372820829234884092349048Ratregion
5061334BF39624013529839176598391900Ratregion
5064784BF3997151252115700040115700165Ratregion
5061428BF3963931682123795269123795437Ratregion
5086929BQ2074081522111485270111485422Ratregion
5087040AI00785517129622821196228382Ratregion
5087107AI0079551602112377692112377852Ratregion
5087136AA8937471192119942235119942354Ratregion
5087440PMC165967P845129560990595610356Ratregion
5087486PMC207566P28542119432560119433414Ratregion
5087492PMC207566P51692119433543119433712Ratregion
5086586BM38587017829247751492477692Ratregion
5087442PMC165967P943929557329195573730Ratregion
5087506PMC212738P14932119427975119428468Ratregion
5089153AU0489861072120519423120519456Ratregion
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5088503AU04860827129830080498301075Ratregion
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5084082AI23323321429606611996066333Ratregion
5084710AI1026902102118724677118724887Ratregion
5084292AA8501001702119426641119426811Ratregion
5085048UniSTS:2563876912102846187102846878Ratregion
5087983UniSTS:14372202125886718125886898Ratregion
5082339BI2745702052116935372116936240Ratregion
5085080AW5331181962101608470101608666Ratregion
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5090667AU049889492117492453117492508Ratregion
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5088525AU0486212102111600968111601178Ratregion
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5088745AU0487531762102661120102661296Ratregion
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5082763BF3900432432121919820121920063Ratregion
5086191AI1787641522118966360118966512Ratregion
5086224AI1018441862115108840115109026Ratregion
5083119BF3908061612120226051120226212Ratregion
5083347AA818143942110227073110227167Ratregion
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5085189AW5340152152124594225124594440Ratregion
5085198AI0100811792124067294124067473Ratregion
5083457BF3913231332120211282120211415Ratregion
5086837AA8011081812110313078110313259Ratregion
5083815AA892399932101713223101713316Ratregion
5083913AI4066271462112322077112322223Ratregion
5502645RH1263012042120310928120311132Ratregion
5503794UniSTS:4711044122117537666117538078Ratregion
5503910UniSTS:2563856412102846237102846878Ratregion
5503550ZFH4__493877329622737996228152Ratregion
5504008px-1e51052121380222121380327Ratregion
5504298D8S1388E8929320471993204809Ratregion
5504552PMC304100P21222117537871117537993Ratregion
5504873ha28479132131027273131028228Ratregion
5506825G462762712114611009114611280Ratregion
5507163UniSTS:2249502122124315280124315492Ratregion
5507197UniSTS:22524619629157084391571039Ratregion
5506993fi13b11.x102109326614109327694Ratregion
5499499stSG6024345052122214219122214724Ratregion
5499783UniSTS:2346592212118763445118763666Ratregion
5499775UniSTS:23463931029247549592475805Ratregion
5501109PMC138456P21182119432458119432576Ratregion
5501299CP-000F2122102457192102458466Ratregion
5501361D3S1232892117527557117527646Ratregion
5505016Mirn124a-21042100134865100134969Ratregion
5501638UNH10876152125612043125612657Ratregion
5501918MARC_17479-17480:1016465460:11222112590043112591201Ratregion
5506060UniSTS:4982663142123791880123792194Ratregion
5506591KIAA11091112119912322119912433Ratregion
550223724.MMHAP12FLH3.seq1882118753830118754018Ratregion
5502705Tenr02119949582119950628Ratregion
5502776GYG11172102648215102648332Ratregion
5502849Bhlhb58712100487952100488823Ratregion
152025239rs10678174902122609194122609194Ratregion
Position Markers

Peak: (D2Rat280)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22111,362,447 - 111,362,592 (+)MAPPER
Rnor_6.02114,164,800 - 114,164,944NCBI
Rnor_5.02133,866,023 - 133,866,167UniSTS
Celera2106,551,521 - 106,551,665UniSTS
SHRSP x BN Map239.8998RGD
SHRSP x BN Map239.8998UniSTS
Cytogenetic Map2q24UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2127447387143657569Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)238573329122609194Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)276539322102785628Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)27478666494359546Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)228484589169504100Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)228484589169504100Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2300109
qtl_general software package: R/qtl software 2300109
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the distal region and measurements taken using the XCT Research SA Plus, software version 5.40 2300109
qtl_statistics_details LOD of 4.6 was observed in females 2300109