Bmd60 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bmd60 (Bone mineral density QTL 60) Rattus norvegicus

Symbol: Bmd60
Name: Bone mineral density QTL 60
RGD ID: 2300183
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: volumetric bone mineral density   (CMO:0001553)    
LOD Score: 5.7
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2141 - 26,541,967RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0141 - 27,597,761RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0141 - 27,589,631RGDRnor5.0
RGSC_v3.4141 - 27,616,586RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Linkage screen for BMD phenotypes in male and female COP and DA rat strains. Koller DL, etal., J Bone Miner Res. 2008 Sep;23(9):1382-8.
2. Epistasis between QTLs for bone density variation in Copenhagen x dark agouti F2 rats. Koller DL, etal., Mamm Genome. 2009 Jan 20.
Related QTLs

Related QTL Description Reference
Bmd50 interacts with RGD:2303105
Bmd68 interacts with RGD:2303105


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2525Dsppdentin sialophosphoprotein1455655625571669Rat
71036Mepematrix extracellular phosphoglycoprotein1454206345432186Rat
69432Ugt2a1UDP glucuronosyltransferase family 2 member A1142052101820545060Rat
70069Cxcl2C-X-C motif chemokine ligand 2141718103017183075Rat
3663Mapk10mitogen activated protein kinase 101464976626790109Rat
2065Afpalpha-fetoprotein141757341217591476Rat
3936Ugt2bUDP glycosyltransferase 2 family, polypeptide B142063057220665062Rat
70548Ppbppro-platelet basic protein141730232617303130Rat
3305Pf4platelet factor 4141729843817299148Rat
2085Albalbumin141760739717622814Rat
2149Aregamphiregulin141697218516981443Rat
3401Prkg2protein kinase cGMP-dependent 2141055988210668479Rat
61969Hpseheparanase1488965938937011Rat
61981Csn2casein beta142032258120329818Rat
70944Cplx1complexin 11411846381216392Rat
2855Ibspintegrin-binding sialoprotein1454398255452570Rat
69318Nkx6-1NK6 homeobox 11479697567976689Rat
2101Ambnameloblastin141960176119614382Rat
2119Anxa3annexin A3141272770812781717Rat
2212Bmp3bone morphogenetic protein 3141071248910737153Rat
3937Ugt2b37UDP-glucuronosyltransferase 2 family, member 37142081728520833917Rat
70513Gnrhrgonadotropin releasing hormone receptor142185687121874861Rat
619926Nup54nucleoporin 54141561763015636029Rat
2680Gfi1growth factor independent 1 transcriptional repressor1420405762056874Rat
3953Smr3bsubmaxillary gland androgen regulated protein 3B141978381519788557Rat
69425Ube2d2bubiquitin-conjugating enzyme E2D 2B1419159991917473Rat
61990Csn3casein kappa142015403220160585Rat
628798Cxcl9C-X-C motif chemokine ligand 9141572286815727779Rat
620233Sec31aSEC31 homolog A, COPII coat complex component1492143249269281Rat
628614Afmafamin141753102617563868Rat
620667Dckdeoxycytidine kinase141930521819326247Rat
619869Cxcl1C-X-C motif chemokine ligand 1141719336417195143Rat
628833Art3ADP-ribosyltransferase 3141563723015719442Rat
620831Epha5EPH receptor A5142365339324020135Rat
620209Cxcl10C-X-C motif chemokine ligand 10141570477215706969Rat
620299Eregepiregulin141702728717041062Rat
2667GcGC, vitamin D binding protein141863214618667563Rat
708342Parm1prostate androgen-regulated mucin-like protein 1141646830916577339Rat
708417Ugt2b7UDP glucuronosyltransferase family 2 member B7142089668220919604Rat
620168Npffr2neuropeptide FF receptor 2141851327718521919Rat
621589Gakcyclin G associated kinase1410898531164098Rat
621604Uso1USO1 vesicle transport factor141586663815932185Rat
621706Ythdc1YTH domain containing 1142118543821215934Rat
620726Barhl2BarH-like homeobox 21433404653345362Rat
620136Slc26a1solute carrier family 26 member 11410405651045851Rat
708534Sult1b1sulfotransferase family 1B member 1142049276320505491Rat
620983Oprpnopiorphin prepropeptide141970253519717550Rat
621152Csn1s2acasein alpha s2-like A142028116720295232Rat
621185Cds1CDP-diacylglycerol synthase 11478203287882943Rat
620491Sult1d1sulfotransferase family 1D, member 1142044113520476341Rat
619825Rpl5ribosomal protein L51418438561850301Rat
620275Btcbetacellulin141670844716746961Rat
68936Slc4a4solute carrier family 4 member 4141884128919293297Rat
61821Tgfbr3transforming growth factor beta receptor 31424893972665383Rat
2508Dmp1dentin matrix acidic phosphoprotein 11455284415542078Rat
621812Cxcl3C-X-C motif chemokine ligand 3141727014617289458Rat
727800Slc10a6solute carrier family 10 member 61460807166102037Rat
1304685Klhl8kelch-like family member 81458077955853325Rat
3954Vcsa2variable coding sequence A2141985123219857697Rat
620365Hnrnpdheterogeneous nuclear ribonucleoprotein D1496153759638975Rat
621078Crlf2cytokine receptor-like factor 214103943108643Rat
1302952Cops4COP9 signalosome subunit 41490785799108788Rat
1302967Tmprss11ctransmembrane protease, serine 11C142178212421837793Rat
3752Spp1secreted phosphoprotein 11453088855315120Rat
1304608Tecrltrans-2,3-enoyl-CoA reductase-like142473224124805272Rat
727827Cxcl11C-X-C motif chemokine ligand 11141568943215692207Rat
1303294Abcg3l1ATP-binding cassette, subfamily G (WHITE), member 3-like 11451245415177265Rat
628623Ugt2b15UDP glucuronosyltransferase family 2 member B15142076801520783599Rat
708540Cxcl6C-X-C motif chemokine ligand 6141731008917312303Rat
1303278Tmprss11btransmembrane serine protease 11B142138592421405894Rat
620895Ugt2b35UDP glucuronosyltransferase 2 family, polypeptide B35142085344120891039Rat
620836Adgrl3adhesion G protein-coupled receptor L3142633632027104060Rat
620129Fgf5fibroblast growth factor 5141132533411346570Rat
621882Scarb2scavenger receptor class B, member 2141555827115609813Rat
620592Cabs1calcium binding protein, spermatid associated 1142009696220099024Rat
1304727Mtf2metal response element binding transcription factor 21416392561683513Rat
1305002Ccng2cyclin G2141480432114812819Rat
708541Ugt2b17UDP glucuronosyltransferase family 2 member B17142102403521035784Rat
1306722Coq2coenzyme Q2, polyprenyltransferase1489414298961418Rat
1305114Mob1bMOB kinase activator 1B141933305819365845Rat
2430Csn1s1casein alpha s1142034362020359614Rat
1308540Utp3UTP3, small subunit processome component141951571619517370Rat
1306446Tmprss11gtransmembrane protease, serine 11G142154608721587258Rat
621377Atp5meATP synthase membrane subunit e1413198681320996Rat
1308523Ccdc158coiled-coil domain containing 158141541117815468579Rat
1307405Septin11septin 11141484475914990856Rat
735156Fgfrl1fibroblast growth factor receptor-like 11410098631022620Rat
1306585Lrrc8cleucine rich repeat containing 8 VRAC subunit C1442239014315590Rat
1306105Tmem150ctransmembrane protein 150C1494549999525300Rat
1306805Zfp644zinc finger protein 6441431050023179955Rat
1305201Dr1down-regulator of transcription 11414582231469578Rat
3776Sult1e1sulfotransferase family 1E member 1142042232420439562Rat
2531Sparcl1SPARC like 11456328165663866Rat
1304688Slc49a3solute carrier family 49 member 31413050911319723Rat
1308324Uba6ubiquitin-like modifier activating enzyme 6142188403921947857Rat
1310879Mthfd2lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like141708994717170036Rat
1311994Sowahbsosondowah ankyrin repeat domain family member B141502915515033589Rat
1308444Ugt2a3UDP glucuronosyltransferase family 2 member A3142057282520590295Rat
1308102Plac8placenta associated 81490526019074264Rat
1310750Adamts3ADAM metallopeptidase with thrombospondin type 1, motif 3141823105118437773Rat
1308351Cdc7cell division cycle 71428046602824796Rat
1310426Paqr3progestin and adipoQ receptor family member 3141246256812484999Rat
1310858Grsf1G-rich RNA sequence binding factor 1141941294419429364Rat
1311361Lin54lin-54 DREAM MuvB core complex component1491297759188244Rat
1310837Lpcat2blysophosphatidylcholine acyltransferase 2b1423385642341972Rat
1311628Prdm8PR/SET domain 8141140320211424059Rat
1311584Stap1signal transducing adaptor family member 1142195046621981395Rat
1309034Rpap2RNA polymerase II associated protein 21421090442187343Rat
1310470Shroom3shroom family member 3141509941515396832Rat
1309016Enoph1enolase-phosphatase 11495313369557797Rat
1307267NaaaN-acylethanolamine acid amidase141577730615796411Rat
1306516Fras1Fraser extracellular matrix complex subunit 1141279140713200862Rat
1310094Thap6THAP domain containing 6141609291916113528Rat
1307997Mrps18cmitochondrial ribosomal protein S18C1488123018818538Rat
1309209Ccnicyclin I141487969814902510Rat
1306669Arhgap24Rho GTPase activating protein 241468006317184001Rat
1310943Iduaalpha-L-iduronidase1410315881059494Rat
1309571G3bp2G3BP stress granule assembly factor 2141593235616020555Rat
1306678Brdtbromodomain testis associated1424210942445842Rat
1310155Jchainjoining chain of multimeric IgA and IgM141953856019546384Rat
1309625Cdkl2cyclin dependent kinase like 2141602738116063257Rat
1306796Enamenamelin141955672919581433Rat
1307093Ppef2protein phosphatase with EF-hand domain 2141579743515831614Rat
1307097Wdfy3WD repeat and FYVE domain containing 31475782457810491Rat
1309601Lrrc8dleucine rich repeat containing 8 VRAC subunit D1440299714134922Rat
1308891Ephx4epoxide hydrolase 41423433762372680Rat
1309989Ugt2b10UDP glucuronosyltransferase 2 family, polypeptide B10142110802221127202Rat
1307940Aff1ALF transcription elongation factor 11458611886024196Rat
1305287Abraxas1abraxas 1, BRCA1 A complex subunit1487962818810625Rat
1308581Dipk1adivergent protein kinase domain 1A1417724121843508Rat
1309950Hnrnpdlheterogeneous nuclear ribonucleoprotein D-like1495580799563654Rat
1310384Prr27proline rich 27142023275720248617Rat
1306850Mrpl1mitochondrial ribosomal protein L1141330052213359654Rat
620654Tmprss11dtransmembrane serine protease 11D142170733621769398Rat
1562220Rasgef1bRasGEF domain family, member 1B14985951210380044Rat
1561381RGD1561381similar to microsomal glutathione S-transferase 3141952550919526128Rat
1564750Vom2r69vomeronasal 2 receptor, 6914528257541777Rat
1562647Vom2r70vomeronasal 2 receptor, 7014644110652544Rat
1561929Albfm1albumin superfamily member 1141747815917525047Rat
1561698Tmprss11etransmembrane serine protease 11E142129612721328203Rat
1561699RGD1561699similar to DNA segment, Chr 5, ERATO Doi 577, expressed141405856014061218Rat
1564256Cxcl13C-X-C motif chemokine ligand 13141360889413613965Rat
1563299Smr3asubmaxillary gland androgen regulated protein 3A142005377920059568Rat
1561226RGD1561226similar to DNA segment, Chr 5, ERATO Doi 577, expressed141401319814015825Rat
1560084Epgnepithelial mitogen141707677417084806Rat
1560216Helqhelicase, POLQ-like1488185828862926Rat
1565703Gpat3glycerol-3-phosphate acyltransferase 31487153678768051Rat
1561294Antxr2ANTXR cell adhesion molecule 2141154226611682112Rat
1565664RGD1565664similar to UDP-glucuronosyltransferase 2B1 precursor, microsomal (UDPGTR-2)142105672621082314Rat
1561977RGD1561977similar to DNA segment, Chr 5, ERATO Doi 577, expressed141416592814168560Rat
1359703Abcg3l2ATP-binding cassette, subfamily G (WHITE), member 3-like 21444932594538264Rat
1565660RGD1565660similar to CDNA sequence BC061212141379059613793232Rat
1562073Rps17-ps12ribosomal protein S17, pseudogene 121497083189708725Rat
1563360Ptpn13protein tyrosine phosphatase, non-receptor type 131461082026282619Rat
1565048RGD1565048similar to 60S ribosomal protein L9142364807023648731Rat
1564723Naa11N(alpha)-acetyltransferase 11, NatA catalytic subunit141218365112193687Rat
1561883Odamodontogenic, ameloblast associated142019328620202517Rat
1309128Cnot6lCCR4-NOT transcription complex, subunit 6-like141341050113502511Rat
1559459RGD1559459similar to Expressed sequence AI788959142114614021167706Rat
1562423Pramef20-ps2PRAME family member 20, pseudogene 2141377142613774085Rat
1303061Cenpccentromere protein C142198806722046732Rat
1359468Fdcspfollicular dendritic cell secreted protein142016969120173983Rat
1559992Pkd2polycystin 2, transient receptor potential cation channel1452371355280455Rat
1311039Pde6bphosphodiesterase 6B1413233101366450Rat
1560931Pcna-ps3proliferating cell nuclear antigen, pseudogene 31474652537482926Rat
1562348Ankrd17ankyrin repeat domain 17141772323917862625Rat
1560816Vom2r68vomeronasal 2 receptor, 6814434685441547Rat
1309712Tmem175transmembrane protein 1751410734101089764Rat
628794Csn1s2bcasein alpha s2-like B142025025720266377Rat
1564165Ccdc18coiled-coil domain containing 181415017491607672Rat
1559654RGD1559654similar to DNA segment, Chr 5, ERATO Doi 577, expressed141391514913922618Rat
1311479Pcgf3polycomb group ring finger 31412375941291717Rat
1309071Dzip1-ps1DAZ interacting protein 1, pseudogene 1142022723420229292Rat
1564828Bmp2kBMP-2 inducible kinase141248119412579411Rat
1562394Rpl30-ps7ribosomal protein L30, pseudogene 7142038186220382205Rat
1564709Abcg3l3ATP-binding cassette, subfamily G (WHITE), member 3-like 31448441614892194Rat
1562932RGD1562932similar to DNA segment, Chr 5, ERATO Doi 577, expressed141445846714461102Rat
1303235Hsd17b11hydroxysteroid (17-beta) dehydrogenase 111456933045743157Rat
1561523Gbp6guanylate binding protein family member 61447302864756508Rat
1311800Stbd1starch binding domain 1141547045215473857Rat
1560335Piggphosphatidylinositol glycan anchor biosynthesis, class G1414049111433199Rat
1566389Vom2r66vomeronasal 2 receptor, 6614145456187657Rat
1585864Set-ps15Set nuclear proto-oncogene, pseudogene 151485173018519537Rat
1587357Eef2-ps3eukaryotic translation elongation factor 2, pseudogene 3141002522710030201Rat
1587358Vom2r-ps113vomeronasal 2 receptor, pseudogene 11314298045312372Rat
1560966Vom2r-ps116vomeronasal 2 receptor, pseudogene 11614576057599232Rat
1566082Rassf6Ras association domain family member 6141743332817473565Rat
1584010Hfm1helicase for meiosis 11428572512943766Rat
1560675Tmprss11ftransmembrane serine protease 11F142149289621534792Rat
1359112Sdad1SDA1 domain containing 1141574148915768270Rat
1559547Cox18cytochrome c oxidase assembly factor COX18141786458117877483Rat
1564576Aff1-as1AFF1 antisense RNA 11460585816065848Rat
1563429Lrrc8bleucine rich repeat containing 8 VRAC subunit B1443504624416336Rat
1359437Tmed5transmembrane p24 trafficking protein 51416078951619028Rat
1565568Abcg3ATP-binding cassette, subfamily G (WHITE), member 31447635524839061Rat
1565242Rufy3RUN and FYVE domain containing 3141943153019506531Rat
1359553Hsd17b13hydroxysteroid (17-beta) dehydrogenase 131457516975766809Rat
1586315C14h1orf146similar to human chromosome 1 open reading frame 1461422304042270782Rat
1588767Rnf212ring finger protein 21214949397988377Rat
1591399Pramef8-ps1PRAME family member 8, pseudogene 1141404520614047856Rat
1589963Kpna1-ps2karyopherin subunit alpha 1, pseudogene 214103902127770Rat
1589974Stathstatherin142030732420311182Rat
1591102Vmn2r116l-ps37vomeronasal 2, receptor 116 like, pseudogene 3714490333496634Rat
1587144LOC679539similar to ubiquitin-conjugating enzyme E2 variant 11447032434704962Rat
1587867Pramef8-ps2PRAME family member 8, pseudogene 2141412255514131850Rat
1592277Vom2r67vomeronasal 2 receptor, 6714251096258386Rat
1592829Zfp326zinc finger protein 3261439412103980419Rat
1588538Abcg3l4ATP-binding cassette, subfamily G (WHITE), member 3-like 41445452064590223Rat
1589059Pramef12-ps2PRAME family member 12, pseudogene 2141398225713985192Rat
1587531Hsp90aa1-ps3heat shock protein 90 alpha family class A member 1, pseudogene 3142110398421106561Rat
1585182Pgk1-ps10phosphoglycerate kinase 1, pseudogene 10142321415023215412Rat
1560413Ndufb4l1NADH:ubiquinone oxidoreductase subunit B4-like 11463658726366282Rat
1359180Rchy1ring finger and CHY zinc finger domain containing 1141611326316129017Rat
1359522Nudt9nudix hydrolase 91456753765693332Rat
1589908Vom2r73vomeronasal 2 receptor, 7314804622815028Rat
1584030LOC690138similar to UPF0197 protein C11orf10 homolog1428249212826084Rat
1585459Fam47efamily with sequence similarity 47, member E141548553715521599Rat
1583596Thoc2lTHO complex subunit 2-like1451970935234960Rat
1588134Ppp2r3bprotein phosphatase 2, regulatory subunit B'', beta148850795750Rat
1587539LOC689841similar to Rho GTPase activating protein 11A142108834521089685Rat
1587481Rpl23a-ps20ribosomal protein L23a, pseudogene 20142137904621379585Rat
1587488Ruvbl2-ps1RuvB-like AAA ATPase 2, pseudogene 11418512191852646Rat
1587388Eno1-ps24enolase 1, pseudogene 24141723383917238216Rat
1595834Kbtbd8-ps2kelch repeat and BTB domain containing 8, pseudogene 2142068833320695396Rat
1598022Asf1a-ps1anti-silencing function 1A histone chaperone, pseudogene 11496495209650910Rat
1597426Vom2r71vomeronasal 2 receptor, 7114691705716053Rat
1592356Amtnamelotin141964862419661181Rat
1588690LOC689798similar to UDP-glucuronosyltransferase142094444920955564Rat
1591080Rpl13a-ps13ribosomal protein L13A, pseudogene 1314544440545103Rat
1588776Tmed11transmembrane emp24 protein transport domain containing 1114926983947574Rat
1588600Glmnglomulin, FKBP associated protein1421871442231295Rat
1591320Oog1-ps4oogenesin 1, pseudogene 4141448453514487334Rat
1594330Csf2racolony stimulating factor 2 receptor subunit alpha1498089103261Rat
1590186LOC685782similar to PRAME family member 9141385005713852806Rat
1597011pramef20lPRAME family member 20-like141457668614579328Rat
1303263Gk2glycerol kinase 2141210707112108923Rat
1598296Ankrd13a-ps1ankyrin repeat domain 13a, pseudogene 114617693619491Rat
1597725Cfap299cilia and flagella associated protein 299141078719111272894Rat
1597129Ppid-ps14peptidylprolyl isomerase D, pseudogene 14142009065620093812Rat
1597130Rpl8-ps4ribosomal protein L8, pseudogene 4141769362617694361Rat
1597133Rpl36-ps1ribosomal protein L36, pseudogene1482570288257342Rat
1597134Tbc1d1-ps1TBC1 domain family member 1, pseudogene 11475237507530777Rat
1597414Vom2r72vomeronasal 2 receptor, 7214887435895179Rat
1596322Tmprss11atransmembrane serine protease 11A142162488121665284Rat
1626032Vom2r-ps123vomeronasal 2 receptor, pseudogene 12314127887130793Rat
1626033Vom2r-ps120vomeronasal 2 receptor, pseudogene 12014804625815028Rat
1626040Vom2r-ps115vomeronasal 2 receptor, pseudogene 11514373930379994Rat
2301011Zfp951zinc finger protein 9511450324945048775Rat
1626000Vom2r-ps133vomeronasal 2 receptor, pseudogene 13314908487908725Rat
1626001Vom2r-ps131vomeronasal 2 receptor, pseudogene 13114876050876166Rat
1626002Vom2r-ps129vomeronasal 2 receptor, pseudogene 12914835007835350Rat
1626006Vom2r-ps119vomeronasal 2 receptor, pseudogene 11914798951799588Rat
1626007Vom2r-ps118vomeronasal 2 receptor, pseudogene 11814750090750395Rat
1626008Vom2r-ps117vomeronasal 2 receptor, pseudogene 11714656796657437Rat
1626009Vom2r-ps114vomeronasal 2 receptor, pseudogene 11414334888342455Rat
2320419Pramef6l-ps1PRAME family member 6 like, pseudogene 1141381739513818717Rat
2319385LOC100365289rCG57257-like149554097828Rat
2318302Smokl-ps6sperm motility kinase like, pseudogene 6142267773222682199Rat
2321418Btbd8BTB domain containing 81422651892338426Rat
2322805Kpna4-ps1karyopherin subunit alpha 4, pseudogene 114565761567317Rat
2320722Dgkqdiacylglycerol kinase, theta1410591251073131Rat
2322879Evi5ecotropic viral integration site 51418756012021678Rat
2321603Ugt2b-ps1UDP glycosyltransferase 2 family, polypeptide B, pseudogene 1142071753520739142Rat
2322973LOC100363472nuclear receptor-binding factor 2-like1489843658986171Rat
2321706Rps3-ps2ribosomal protein S3, pseudogene 2141475597114756630Rat
2323137Scpppq1secretory calcium-binding phosphoprotein proline-glutamine rich 11456640055675252Rat
2323210LOC100363333PRAME family member 12141451052614513196Rat
2321083Ppial4dpeptidylprolyl isomerase A (cyclophilin A)-like 4D142100652221007284Rat
2321178Atp5mc2-ps2ATP synthase membrane subunit c locus 2, pseudogene 2142146267421463166Rat
2324284Acer3-ps1alkaline ceramidase 3, pseudogene 1142572905125729730Rat
2324321Mobp-ps1myelin-associated oligodendrocyte basic protein, pseudogene 1142350234823502821Rat
2324510Dus4l-ps1dihydrouridine synthase 4-like, pseudogene 1142327997423280735Rat
2324613LOC100366030rCG37858-like1448894864938248Rat
2325094Gbp6-ps1guanylate binding protein 6, pseudogene 11446617844678989Rat
6489816Odaphodontogenesis associated phosphoprotein141607183516084210Rat
6492538LOC100911553uncharacterized LOC1009115531492006749210222Rat
6501942Rrs1-ps6ribosome biogenesis regulator 1 homolog, pseudogene 6141394717013948293Rat
6499239LOC100910292PRAME family member 20/21-like141458906914591723Rat
6502517Oog1-ps2oogenesin 1, pseudogene 2141382541713830446Rat
6499958LOC100910198uncharacterized LOC1009101981454193475435372Rat
6503293LOC100909497putative PRAME family member 24-like141376429913767174Rat
6496885Hnrnpa1-ps40heterogeneous nuclear ribonucleoprotein A1, pseudogene 40142096235220965420Rat
6500116LOC100910108uncharacterized LOC100910108144136054088Rat
6500970LOC100909936putative PRAME family member 24-like141442043414423091Rat
7528373Rpl38-ps5ribosomal protein L38, pseudogene 51449862884986755Rat
7489037Mir6321microRNA 6321141945931719459457Rat
7496786LOC102546535uncharacterized LOC102546535141613716416153244Rat
7513863LOC102546751uncharacterized LOC102546751142601753826019528Rat
7646169Gbp6-ps3guanylate binding protein 6, pseudogene 31444740874708888Rat
7632243LOC102549277uncharacterized LOC1025492771472581687268578Rat
7621998LOC102555488zinc finger protein 120-like1451052685108118Rat
7623930LOC102549397zinc finger protein 120-like142569958225701112Rat
7639242LOC102549607putative PRAME family member 24-like141471592214718579Rat
7629118Ap2s1-ps1adaptor related protein complex 2 subunit sigma 1, pseudogene 11416262791626764Rat
7610351LOC102550678uncharacterized LOC1025506781427627462773445Rat
7616489LOC102548714zinc finger protein 709-like1450573195072903Rat
7616873LOC102554605zinc finger protein 844-like14215357235365Rat
7589278LOC102550272uncharacterized LOC1025502721484437708469404Rat
7617963LOC102551010uncharacterized LOC1025510101430367493043915Rat
7618949LOC102549742uncharacterized LOC102549742141729471617295743Rat
7571781Hist2h2be-ps1histone cluster 2 H2B family member E, pseudogene 11417032041703603Rat
7557650LOC102551078uncharacterized LOC1025510781493163059318560Rat
7576947LOC102554768uncharacterized LOC102554768141229429512307954Rat
7545280LOC102554799uncharacterized LOC102554799146216567003Rat
7693155LOC102550950uncharacterized LOC1025509501491117879129680Rat
7686608LOC102548800zinc finger protein 14-like1450036585026217Rat
7738992LOC102551594uncharacterized LOC1025515941434184433425147Rat
7702016LOC102554702uncharacterized LOC102554702141213389912183562Rat
7702897LOC102546534uncharacterized LOC1025465341460747946077095Rat
7749529LOC102556249uncharacterized LOC1025562491413767071385688Rat
7709406LOC102557303vesicle-associated membrane protein 724-like1496441099681254Rat
7681103Rps3a-ps3ribosomal protein S3a, pseudogene 3141106594811071780Rat
9195730Ugt2b4l-ps1UDP glucuronosyltransferase family 2 member B4 like, pseudogene 1142103826621042369Rat
9201570LOC103693729uncharacterized LOC103693729141319853813202957Rat
9216872LOC103693725ubiquitin-conjugating enzyme E2 variant 2 pseudogene1490448499054618Rat
9371121Ybx1-ps3Y box binding protein 1, pseudogene 3141550470515509832Rat
9399075LOC103692776uncharacterized LOC103692776142180985621825718Rat
11368116LOC108352715glyceraldehyde-3-phosphate dehydrogenase pseudogene141124784411248900Rat
11371099LOC108352713uncharacterized LOC108352713141006120910062206Rat
11372248LOC10835270040S ribosomal protein S25 pseudogene1465073606510458Rat
11364956LOC10835268840S ribosomal protein S26-like1418773631899835Rat
11434380LOC108352824SMR1 protein-like141990080819901906Rat
11466948LOC108352696uncharacterized LOC1083526961443239154325615Rat
11467926LOC108352710uncharacterized LOC1083527101488804948888096Rat
11472470LOC108352846uncharacterized LOC108352846141262703812627824Rat
11357449Pramef20-ps1PRAME family member 20, pseudogene 1141375017913752838Rat
11357622LOC108352692uncharacterized LOC1083526921433331193337171Rat
11446409LOC108352727uncharacterized LOC108352727142019566120214723Rat
11438225LOC108352732uncharacterized LOC108352732142621490926225971Rat
11356953LOC108352843glyceraldehyde-3-phosphate dehydrogenase pseudogene1430547593056041Rat
11361880LOC108352720uncharacterized LOC108352720141525594615263468Rat
11364439LOC108352690uncharacterized LOC1083526901423728202379642Rat
11430399LOC108348123zinc finger protein 431-like1449640044980011Rat
11441489LOC108352708uncharacterized LOC1083527081486494348676819Rat
11432687LOC108352729uncharacterized LOC108352729142121603021241866Rat
11405419LOC108352841uncharacterized LOC108352841142647842326487525Rat
11416112LOC108352711uncharacterized LOC1083527111493288859338581Rat
11416353LOC108352704uncharacterized LOC1083527041473351757347219Rat
11423237LOC108352697uncharacterized LOC1083526971455469735569298Rat
11423634LOC10835282340S ribosomal protein S19 pseudogene141233474612375603Rat
11395754LOC108352691uncharacterized LOC1083526911423409602354287Rat
11375289LOC108352723uncharacterized LOC108352723141730476017307239Rat
11377841LOC10835271960S ribosomal protein L12 pseudogene141521672215217306Rat
11400801LOC108352694uncharacterized LOC1083526941435274233557599Rat
11389755LOC108352705uncharacterized LOC1083527051478830857884663Rat
11380862LOC108352728uncharacterized LOC108352728142039739320404391Rat
11381376LOC108352839uncharacterized LOC1083528391444397084444361Rat
11391501LOC108352702uncharacterized LOC1083527021468496906856252Rat
11392357LOC108352699uncharacterized LOC1083526991463861326424780Rat
11501013LOC10835284260S ribosomal protein L34 pseudogene1417076201708266Rat
11503027LOC108352825protein transport protein Sec61 subunit gamma pseudogene142556696925655719Rat
11497443Acta1-ps1actin, alpha 1, skeletal muscle, pseudogene 1142211410422114971Rat
11498901LOC10835282260S ribosomal protein L29 pseudogene1435174313517955Rat
11482723LOC108352706uncharacterized LOC1083527061479388597947343Rat
41322366LOC120096527uncharacterized LOC120096527142300644523041321Rat
41378313LOC120096569uncharacterized LOC120096569141021805710223168Rat
41086619LOC120096867U6 spliceosomal RNA1411533381153444Rat
41112099LOC120096552uncharacterized LOC1200965521429448212967787Rat
41137597LOC120096571uncharacterized LOC120096571141248615312492479Rat
41167547Ndufa3-ps2NADH:ubiquinone oxidoreductase subunit A3, pseudogene 21458234615825293Rat
41202894LOC120096559uncharacterized LOC1200965591445855044587305Rat
41203179Tmem271transmembrane protein 2711413857121388092Rat
41248860Prelid1-ps4PRELI domain containing 1, pseudogene 4141048205110482698Rat
41281688LOC120096803small nucleolar RNA SNORA17141816018618160317Rat
41282244LOC120096741U6 spliceosomal RNA1496989929699096Rat
41323582LOC120096562uncharacterized LOC1200965621458590795862463Rat
41113676LOC120096558uncharacterized LOC1200965581448326074841231Rat
41168294LOC120096565uncharacterized LOC1200965651474268777433641Rat
41284210LOC120096727uncharacterized LOC1200967271474014657408299Rat
41382898LOC120096589uncharacterized LOC120096589142066552120675111Rat
41089131LOC120096783small nucleolar RNA SNORA36 family1443119194312050Rat
41325492LOC120096723ferritin light chain 1-like142605035526050863Rat
41090631LOC120096555uncharacterized LOC1200965551431121123116232Rat
41115972LOC120093066uncharacterized LOC120093066141733898417370314Rat
41280603Oog1-ps1oogenesin 1, pseudogene 1141419200614194806Rat
41326326LOC120096550uncharacterized LOC1200965501417459231751560Rat
41360123LOC120096590uncharacterized LOC120096590142067519020682835Rat
41328344LOC120096511PRAME family member 8-like141466067714663400Rat
41362457LOC120096842U2 spliceosomal RNA141267594512676137Rat
41118678LOC120096720NEDD4-binding protein 1-like141455595814557059Rat
41119288LOC120096715PRAME family member 8-like141402964214032337Rat
41119499LOC120096819small nucleolar RNA SNORA17142437744624377574Rat
41363359LOC120096750U6 spliceosomal RNA142532491125325017Rat
41363895LOC120096573uncharacterized LOC120096573141326036313281692Rat
41094695LOC120096581oogenesin-3-like141630545616306013Rat
41120328LOC120096794small Cajal body-specific RNA 23141601655616016682Rat
41148703LOC120096561uncharacterized LOC1200965611458266225828757Rat
41390866LOC120096777small nucleolar RNA SNORA661418464561846587Rat
41097334Cwf19l1-ps1CWF19 like cell cycle control factor 1, pseudogene 1141568179415689181Rat
41178013Snora66small nucleolar RNA, H/ACA box 661418443731844504Rat
41189227LOC120096526UDP-glucuronosyltransferase 2B17-like142080250220807337Rat
41366938LOC120096547uncharacterized LOC1200965471455139575516173Rat
41392218Ppid-ps10peptidylprolyl isomerase D, pseudogene 101489161688918133Rat
41393193LOC120096739U6 spliceosomal RNA1446326424632748Rat
41098044LOC120096575uncharacterized LOC120096575141543651015439033Rat
41153909LOC120096556uncharacterized LOC1200965561440160024024309Rat
41155403Ugt2b17-ps1UDP glucuronosyltransferase family 2 member B17, pseudogene 1142074059920745728Rat
41192184LOC120096568uncharacterized LOC1200965681498135049816468Rat
41265197LOC120096791small Cajal body-specific RNA 4141562251715622646Rat
41288113LOC120096834U6atac minor spliceosomal RNA141575059415750708Rat
41367690Vmn2r116l-ps6vomeronasal 2, receptor 116 like, pseudogene 614840701855813Rat
41395196LOC120096806U1 spliceosomal RNA142197358221973761Rat
41155602Sec61g-ps2Sec61 translocon subunit gamma, pseudogene 2141604012616042214Rat
41180782Mrpl30-ps1mitochondrial ribosomal protein L30, pseudogene 1141534458915345964Rat
41268253LOC120096815small nucleolar RNA SNORA17141103643411036565Rat
41369409LOC120096868U6 spliceosomal RNA141202668912026795Rat
41102643LOC120096799small nucleolar RNA SNORA48141667595116676080Rat
41126636LOC120096747U6 spliceosomal RNA141742200317422114Rat
41158177LOC120096572uncharacterized LOC120096572141265225512661089Rat
41182668LOC120096852U2 spliceosomal RNA142163718321637302Rat
41183035LOC120096510oogenesin-1-like141380317313805847Rat
41193840LOC120096854small nucleolar RNA U31448159744816072Rat
41195182LOC120096864U4 spliceosomal RNA141255384212553982Rat
41070389LOC120096564uncharacterized LOC1200965641465131636530122Rat
41229021LOC120096554uncharacterized LOC1200965541430736233089337Rat
41271520LOC120096582uncharacterized LOC120096582141748290017529510Rat
41081832LOC120096835U6atac minor spliceosomal RNA1431302113130333Rat
41230670LOC120096853U2 spliceosomal RNA141342550313425629Rat
41375215LOC120096779small nucleolar RNA SNORA70141500957415009708Rat
41199361LOC120096563cytochrome c oxidase assembly protein COX20, mitochondrial-like1465677336568059Rat
41273802LOC120096585uncharacterized LOC120096585142040441720406946Rat
41296642LOC120096828U1 spliceosomal RNA142357271223572874Rat
41378079LOC120096837small nucleolar RNA U13141596638315966493Rat
41404100LOC120096579uncharacterized LOC120096579141651140116643441Rat
41134169LOC120096591uncharacterized LOC120096591142226463822347467Rat
40949163LOC120096576uncharacterized LOC120096576141581014015814669Rat
40949335Srp19-ps1signal recognition particle 19, pseudogene 1141876858218769192Rat
40949944LOC120096866U6 spliceosomal RNA142139165121391757Rat
40974171LOC120096782small nucleolar RNA SNORA57141587592315876063Rat
40975998LOC120096832small nucleolar RNA SNORA76141963029219630423Rat
40978001LOC120096705serine protease 29-like142222237638Rat
41015304LOC120096809small nucleolar RNA SNORA17141839961018399737Rat
40979202Rps11-ps15ribosomal protein S11, pseudogene 151427474602747848Rat
40980577LOC120096570uncharacterized LOC120096570141022585310229996Rat
40998944LOC120096795U1 spliceosomal RNA1460569876057141Rat
40981411LOC120096760U6 spliceosomal RNA141245608412456190Rat
40932177Snord21small nucleolar RNA, C/D box 211418471341847227Rat
40982470N4bp1-ps3Nedd4 binding protein 1, pseudogene 3141453412514535345Rat
40933861N4bp1-ps4Nedd4 binding protein 1, pseudogene 4141454139914542619Rat
40959535LOC120096512PRAME family member 8-like141470434014706997Rat
40960387LOC120096557zinc finger protein 239-like1450812435082649Rat
40984079Trnas-aga37transfer RNA serine (anticodon AGA) 371492754089275482Rat
40985305LOC120096712basic salivary proline-rich protein 2-like1433387813340390Rat
40986009LOC120096830small nucleolar RNA SNORA17142445330224453395Rat
40988626LOC120096592uncharacterized LOC120096592142430608824337634Rat
41008131Lamtor2-ps1late endosomal/lysosomal adaptor, MAPK and MTOR activator 2, pseudogene 1141596783615968234Rat
40967190Hmgb1-ps11high-mobility group box 1, pseudogene 111415510231553628Rat
40992817LOC120096583uncharacterized LOC120096583141846781518488097Rat
40942071LOC120096549uncharacterized LOC1200965491417334841743611Rat
40942266N4bp1-ps5Nedd4 binding protein 1, pseudogene 5141454870014549920Rat
41025388LOC120096865U6 spliceosomal RNA1483304688330574Rat
41333528LOC120096551uncharacterized LOC1200965511425609292576673Rat
41256287LOC120096584uncharacterized LOC120096584142013075920172275Rat
41339289LOC120096508uncharacterized LOC1200965081427744122780898Rat
41335342LOC120096578uncharacterized LOC120096578141600897916028574Rat
41057074LOC120096753U1 spliceosomal RNA142224747522247636Rat
41057597LOC120096580uncharacterized LOC120096580141665340216669293Rat
41221305LOC120096588uncharacterized LOC120096588142059933820650775Rat
41060834LOC120096553uncharacterized LOC1200965531429614942973084Rat
41335052LOC120096509uncharacterized LOC120096509141205730812060933Rat
41227516LOC120096802small nucleolar RNA SNORA17141828413118284262Rat
41017864LOC120096567uncharacterized LOC1200965671489761308980582Rat
41041616LOC120096859U4 spliceosomal RNA141985066119850849Rat
41307086LOC120096745U6 spliceosomal RNA1447980324798138Rat
41043845Kbtbd8-ps1kelch repeat and BTB domain containing 8, pseudogene 1142061325720620826Rat
41240491LOC120096701peptidyl-prolyl cis-trans isomerase FKBP2-like1466792296679870Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10113D14Mit2194141759357517593761Ratregion
10135D14Wox11135141762256217622685Ratregion
10622D14Mgh3120141863134518631470Ratregion
10623D14Wox12194141864404318644232Ratregion
11077D14Wox18147141730012517300272Ratregion
11078D14Mgh10235141730006917300296Ratregion
33937D14Mit111431438570383857178Ratregion
33953D14Mit1186141103062211030812Ratregion
34479D14Mgh7112141025455610254668Ratregion
11482D14Wox13194141984803919848270Ratregion
11482D14Wox13194141985881119859012Ratregion
11483D14Wox17141985879219859003Ratregion
33551D14Mit6191141827449818274691Ratregion
36053D14Rat41341481706688170790Ratregion
37350D14Rat42242141280020012800448Ratregion
37528D14Rat662311419153401915553Ratregion
36890D14Rat21601417963081796464Ratregion
37030D14Rat31591490888099088978Ratregion
36520D14Rat7168142283307822833252Ratregion
36536D14Rat11441438130743813216Ratregion
34981D14Rat231681412176061217776Ratregion
35805D14Rat5160141027701610277166Ratregion
35965D14Rat6174141487516814875342Ratregion
39598D14Rat81202142119949321199724Ratregion
39860D14Rat731941485443128544522Ratregion
39870D14Rat691851425342412534422Ratregion
39876D14Rat98227141301531113015539Ratregion
40104D14Rat99237142453123024531477Ratregion
40146D14Rat76163141098859410988749Ratregion
39138D14Rat50232142541088525411143Ratregion
39174D14Rat55219142565635625656577Ratregion
39204D14Rat542201440418724042062Ratregion
39568D14Rat74212141026652010266726Ratregion
41984D14Arb12721454404385440710Ratregion
41990D14Arb16120142121750821217635Ratregion
41992D14Arb17190141864401218644233Ratregion
41994D14Arb211314952901953006Ratregion
41996D14Arb3277141729924417299529Ratregion
41998D14Arb4246141762249617622741Ratregion
42002D14Arb6300142043920720439526Ratregion
41160D14Rat79202141307741513077619Ratregion
41348D14Rat80154141232686612327004Ratregion
41438D14Rat721731464761076476292Ratregion
43007D14Rat1112121415593121559527Ratregion
43008D14Rat1011621497444899744646Ratregion
43009D14Rat104127141342914713429281Ratregion
43010D14Rat103230141280874912808976Ratregion
43013D14Rat114242141263435112634585Ratregion
42386D14Rat1422461457482455748477Ratregion
42387D14Rat1412151420907582090963Ratregion
42390D14Rat143119141821258418212709Ratregion
40834D14Rat78104141599509915995211Ratregion
41690D14Rat102200141817462718174822Ratregion
45136D14Got21731412419101242083Ratregion
45137D14Got120414938989939187Ratregion
45137D14Got120414938989939366Ratregion
45139D14Got31751422260862226258Ratregion
45141D14Got62731428034202803693Ratregion
45142D14Got51461435744873574631Ratregion
45143D14Got72441441463534146597Ratregion
45144D14Got81561444566974456852Ratregion
45146D14Got101721458895485889720Ratregion
45149D14Got12315141261162612611938Ratregion
45151D14Got13236141186828911868525Ratregion
45152D14Got16156141065432710654483Ratregion
45153D14Got152451491148449115089Ratregion
45155D14Got19197141555212315552320Ratregion
45156D14Got22299141542937215429671Ratregion
45158D14Got18171141555998715560158Ratregion
45159D14Got20178141558915315589333Ratregion
45160D14Wox2186141668310216683292Ratregion
45162D14Got23198141749136017491558Ratregion
45163D14Got25175141797429517974470Ratregion
45164D14Got26138141815274618152886Ratregion
45165D14Got29133142034430420344439Ratregion
45166D14Got33254142565639825656652Ratregion
45167D14Got32197142443885524439049Ratregion
60762D14Wox10100141762256117622640Ratregion
60763D14Wox3191142137954621379735Ratregion
60083D14Got92211459921065992327Ratregion
45306D14Got171451475365267536671Ratregion
60056D14Got111171459356435935760Ratregion
60057D14Got141711484858848486055Ratregion
60058D14Got24150141756528517565435Ratregion
60059D14Got2791141880112418801217Ratregion
60060D14Got28169141880108718801258Ratregion
60061D14Got30283141964900219649280Ratregion
66462D14Mco13350141317472713175095Ratregion
738055D14Hmgc4247141984801919848266Ratregion
738057D14Hmgc5198142177574021775938Ratregion
738059D14Hmgc3144141773143117731575Ratregion
738061D14Hmgc6155142368553923685694Ratregion
738061D14Hmgc6155142368553923685855Ratregion
738061D14Hmgc6155142368557123685694Ratregion
66577D14Mco8210142128638821286593Ratregion
66697D14Uia4227142250750422507731Ratregion
67231D14Arb18128142036015820360286Ratregion
1630530D14Wox31290142042160720421896Ratregion
1630716D14Got134162141740246517402624Ratregion
1631409D13Got1411711431910883191259Ratregion
1631784D14Wox27171141073692810737099Ratregion
1627952D14Got142215141570245515702672Ratregion
1628920D14Got154201141160505211605253Ratregion
1629285D14Got1572441439331113933350Ratregion
1629966D14Uwm162271418371031837330Ratregion
1633391D14Got130171141797433417974505Ratregion
1634893D14Got129185141732957717329764Ratregion
1635099D14Got1471001475915087591606Ratregion
1635397D14Wox19142043937820439524Ratregion
1636252D14Got100220141088568010885902Ratregion
1637138D14Ulb1304141562902915629335Ratregion
1637440D14Got1392141493816679381872Ratregion
1634005D14Wox221631456635145663677Ratregion
1634245D14Got132266141515146815151734Ratregion
1634806D14Wox301461424876502487796Ratregion
4145308D14Hmgc11293141592753015927824Ratregion
4145310D14Hmgc10247141588074515880993Ratregion
4145312D14Hmgc12163141594176015941924Ratregion
4145314D14Hmgc9229141587577815876008Ratregion
4145316D14Hmgc13233141599212815992362Ratregion
7205986Ppia150142100663421006784Ratregion
7193050U27267123141731111917311242Ratregion
7206728stSG6070150141579705515798143Ratregion
7206510UniSTS:546792882141210775512108637Ratregion
5035773PMC166143P11001419169471917047Ratregion
5035881PMC275467P5941141757579717576738Ratregion
5038634BB23255183141942923919429322Ratregion
5036053UniSTS:463464611490695529069613Ratregion
5038904RH127399220142294759422947813Ratregion
5038934RH1274171941461085306108724Ratregion
5039006RH127459183141786069517860878Ratregion
5039034RH127475150141612868016128830Ratregion
5035625D21S1917471456473455647929Ratregion
5035709SPARCL1961456582285658324Ratregion
5033979RH140889183141586682415867007Ratregion
5028637RH1256892011495623059562506Ratregion
7205848GAK__67724981411635951164093Ratregion
7206154UniSTS:5322818211467848186785639Ratregion
7206204Afp165141757449317575848Ratregion
5026266RH1315541801488126068812870Ratregion
5028855RH1425862121452118805212092Ratregion
5028887RH1427031441463514546351598Ratregion
5034205RH1417642201489356368935856Ratregion
5034221RH1418241801489295338929714Ratregion
5031840AU046980234141029275810292992Ratregion
5034398AA998890205141272965012729855Ratregion
5029231RH144013126141561096515611091Ratregion
5029309RH144308200141564605015646250Ratregion
5034740BI2764901561410735501073706Ratregion
5034772AI406402208141320275613202964Ratregion
5026780RH1335011811487144688714649Ratregion
5029533AA8596161981478102077810405Ratregion
5035130BE096355184141934132219341506Ratregion
5032369C87704114141951584719515961Ratregion
5032451Fgf5177141132542011325597Ratregion
5035352AW5299131941456509205651114Ratregion
5027147WI-17713156142130128821301444Ratregion
5032671RH134866201149790198102Ratregion
5027295C80280115141942893519429050Ratregion
5027297AW557551132141951594119516073Ratregion
5032705RH1349931931448443744844567Ratregion
5035304AI1032852021461237056123907Ratregion
5032891RH1368662141426650942665308Ratregion
5032909RH136935183142195577521955958Ratregion
5025002BB446153103142194468521944788Ratregion
5025004AA6901791241489354488935572Ratregion
5030321BE105744151142047497320475124Ratregion
5030323BF4023272471473352347335481Ratregion
5027771RH946781651453090085309173Ratregion
502790728.MMHAP88FRB10.seq1631415897571589920Ratregion
5030499BI288928157141011708210117239Ratregion
5033245RH1381221571422384662238623Ratregion
5033247RH138130208141026030110260509Ratregion
502794338.MMHAP88FLE5.seq158142229442622294584Ratregion
5030801BE1202001741465388066538980Ratregion
5033653RH139612191141646865216468843Ratregion
5025620RH129019188141563726015637448Ratregion
5028253D4Mit35368142416042724160495Ratregion
5030903BF399292192141489982814900020Ratregion
5030919BF399376166141272780912727975Ratregion
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5507587Alb1128141762198717622819Ratregion
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5503839PRDM8_8072919141140450511405424Ratregion
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5501679UniSTS:265677293142100676521007058Ratregion
5501720UniSTS:266988152142400776024007912Ratregion
5502012MARC_23646-23647:1029444341:11581496278969628952Ratregion
5502014MARC_23650-23651:1029445581:19531496326219633574Ratregion
5503005Barhl2681433409873341055Ratregion
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5502847Arhgap11a0142108931021090044Ratregion
Position Markers

Peak: (D14Rat54)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2144,041,872 - 4,042,062 (+)MAPPER
Rnor_6.0145,097,667 - 5,097,856NCBI
Rnor_5.0145,089,537 - 5,089,726UniSTS
RGSC_v3.4145,116,492 - 5,116,681UniSTS
RGSC_v3.4145,116,491 - 5,116,681RGD
RGSC_v3.1145,116,492 - 5,116,681RGD
Celera144,204,900 - 4,205,089UniSTS
RH 3.4 Map1479.2RGD
RH 3.4 Map1479.2UniSTS
RH 2.0 Map14105.5RGD
SHRSP x BN Map142.29RGD
FHH x ACI Map141.33RGD
Cytogenetic Map14p22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141757341219726296Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
61413Eae10Experimental allergic encephalomyelitis QTL 103.5nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)141762268518274498Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2300109
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the midfemoral shaft and measurements taken using the XCT Research SA Plus, software version 5.40 2300109
qtl_general software package: R/qtl software 2300109
qtl_general epistasis with Bmd68 region influences vBMD at distal femur (LOD=5.0) and also with Bmd50 to impact the neck (LOD=3.5) 2303105
qtl_statistics_details LOD of 4.6 was observed in females 2300109