Bmd54 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd54 (Bone mineral density QTL 54) Rattus norvegicus

Symbol: Bmd54
Name: Bone mineral density QTL 54
RGD ID: 2300178
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: volumetric bone mineral density   (CMO:0001553)    
LOD Score: 5.3
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2747,651,439 - 92,651,439RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0755,495,689 - 100,495,689RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0755,753,806 - 100,753,806RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.4752,159,077 - 97,159,077RGD_MAPPER_PIPELINERGSC_v3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Linkage screen for BMD phenotypes in male and female COP and DA rat strains. Koller DL, etal., J Bone Miner Res. 2008 Sep;23(9):1382-8.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D7Rat23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,151,326 - 70,151,553 (+)MAPPER
Rnor_6.0777,995,576 - 77,995,802NCBI
Rnor_5.0778,253,693 - 78,253,919UniSTS
RGSC_v3.4774,658,964 - 74,659,191RGD
RGSC_v3.4774,658,965 - 74,659,191UniSTS
Celera767,207,745 - 67,207,971UniSTS
RGSC_v3.1774,679,694 - 74,679,921RGD
SHRSP x BN Map745.53UniSTS
SHRSP x BN Map745.53RGD
Cytogenetic Map7q22UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general software package: R/qtl software 2300109
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2300109
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the distal region and measurements taken using the XCT Research SA Plus, software version 5.40 2300109
qtl_statistics_details LOD of 9.6 was observed in females 2300109