Iddm33 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Iddm33 (Insulin dependent diabetes mellitus QTL 33) Rattus norvegicus

Symbol: Iddm33
Name: Insulin dependent diabetes mellitus QTL 33
RGD ID: 2299161
Trait: blood glucose amount   (VT:0000188)    
Measurement Type: age at onset/diagnosis of type 1 diabetes mellitus   (CMO:0001140)    
LOD Score: 2.98
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22206,312,063 - 220,876,787RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02221,488,355 - 254,121,739RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02239,538,172 - 272,813,962RGDRnor5.0
RGSC_v3.42214,633,709 - 247,295,816RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: ACI.BBDP-(RT1u)(Gimap5)/Sunn 



Candidate Gene Status
Ptpn22 is a candidate Gene for Iddm33

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Unpublished observations for Iddm QTL Personal communication with Dr. Wallis
2. TYPE 1 DIABETES IN THE BB RAT: A POLYGENIC DISEASE. Wallis RH, etal., Diabetes. 2009 Apr;58(4):1007-17. Epub 2009 Jan 23

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41099910LOC120100930uncharacterized LOC1201009302206309782206320787Rat
9134989Rpl29-ps19ribosomal protein L29, pseudogene 192206395238206395694Rat
41283458LOC120100931uncharacterized LOC1201009312206476952206563532Rat
2325570Mir137microRNA 1372206480881206480982Rat
621218Dpyddihydropyrimidine dehydrogenase2206609043207474982Rat
41124880Srsf3-ps10serine and arginine rich splicing factor 3, pseudogene 102207531152207531595Rat
41116120LOC120101052glyceraldehyde-3-phosphate dehydrogenase-like2207573774207574392Rat
9452817LOC10369168340S ribosomal protein S25 pseudogene2207801725207802164Rat
1359267Ptbp2polypyrimidine tract binding protein 22207812659207874019Rat
40963561LOC120101155U6 spliceosomal RNA2208079080208079186Rat
41379236LOC120100933uncharacterized LOC1201009332208145717208160885Rat
11489382LOC108350096uncharacterized LOC1083500962208162382208197773Rat
11461856LOC10835020760S ribosomal protein L7a pseudogene2208226649208229806Rat
41368927LOC120101323small nucleolar RNA SNORA172208691757208691893Rat
7689133LOC102553943uncharacterized LOC1025539432208811155208902561Rat
41204947LOC120101150U6 spliceosomal RNA2209080591209080697Rat
620472Rwdd3RWD domain containing 32209233622209254842Rat
1563041Tlcd4TLC domain containing 42209284873209360156Rat
1312003Alg14ALG14, UDP-N-acetylglucosaminyltransferase subunit2209368285209445425Rat
41047991Rps19-ps5ribosomal protein S19, pseudogene 52209391463209400978Rat
41057139LOC120100935uncharacterized LOC1201009352209455803209471532Rat
9160273LOC103691685uncharacterized LOC1036916852209483062209485542Rat
71044Cnn3calponin 32209518948209550107Rat
1305808Slc44a3solute carrier family 44, member 32209552138209628182Rat
41398164Rps26-ps10ribosomal protein S26, pseudogene 102209609564209609936Rat
41057892LOC120100615uncharacterized LOC1201006152209685919209688475Rat
7725447LOC102554786uncharacterized LOC1025547862209793551209809684Rat
7551151LOC102555482uncharacterized LOC1025554822209814809209826925Rat
2587F3coagulation factor III, tissue factor2209827061209838666Rat
2007Abcd3ATP binding cassette subfamily D member 32209852087209905763Rat
11480249LOC108350099uncharacterized LOC1083500992209905915209913027Rat
11406694LOC108350100uncharacterized LOC1083501002209944515209947600Rat
11513964LOC108350286uncharacterized LOC1083502862210050745210060860Rat
1306185Arhgap29Rho GTPase activating protein 292210060036210132572Rat
1309445Abca4ATP binding cassette subfamily A member 42210164813210302069Rat
7596073LOC102555028uncharacterized LOC1025550282210331569210347164Rat
619871Gclmglutamate cysteine ligase, modifier subunit2210347482210367537Rat
6497192Dnttip2deoxynucleotidyltransferase, terminal, interacting protein 22210374321210386366Rat
11467540Trnar-ucu3transfer RNA arginine (anticodon UCU) 32210391950210392034Rat
2325489Mir760microRNA 7602210392616210392695Rat
7736595Gapdh-ps12Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 122210426206210427137Rat
41285011LOC120100937uncharacterized LOC1201009372210472206210481495Rat
7656864LOC102555173uncharacterized LOC1025551732210479038210503307Rat
1311688Bcar3BCAR3 adaptor protein, NSP family member2210525260210638674Rat
1305386Fnbp1lformin binding protein 1-like2210647241210748203Rat
1560826Gapdhl9glyceraldehyde-3-phosphate dehydrogenase like 92210784633210785652Rat
620995Pde5aphosphodiesterase 5A2210858515211003480Rat
7674945LOC102550474uncharacterized LOC1025504742211033028211055822Rat
2591Fabp2fatty acid binding protein 22211040032211044089Rat
1594660Arlnallregulin2211055925211057685Rat
1306615Usp53ubiquitin specific peptidase 532211059512211120942Rat
1307669Myoz2myozenin 22211141463211168187Rat
1590831Amigo1-ps1adhesion molecule with Ig like domain 1, pseudogene 12211178691211179898Rat
1564779Synpo2synaptopodin 22211217099211371267Rat
1311720Sec24dSEC24 homolog D, COPII coat complex component2211418557211526588Rat
1304822Mettl14methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit2211530598211546845Rat
40933303Rnu6atacRNA, U6atac small nuclear2211550817211550946Rat
1563330Elob-ps2elongin B, pseudogene 22211572027211572374Rat
69238Prss12serine protease 122211624134211684126Rat
41363597LOC120101240small nucleolar RNA SNORA242211685412211685541Rat
1310960Ndst3N-deacetylase and N-sulfotransferase 32211702728211868159Rat
2322330Etv5-ps4ETS variant transcription factor 5, pseudogene 42211924809211961519Rat
1594630Hspd1-ps12heat shock protein family D (Hsp60) member 1, pseudogene 122212006958212007894Rat
41096747Rps6-ps9ribosomal protein S6, pseudogene 92212165073212167335Rat
1594628Rpl19-ps21ribosomal protein L19, pseudogene 212212442681212443245Rat
9137798LOC103691690uncharacterized LOC1036916902212510779212535802Rat
1306398Tram1l1translocation associated membrane protein 1-like 12212511130212513311Rat
13065191700006A11RiklRIKEN cDNA 1700006A11 gene like2212608467212639536Rat
1594621Rpl7-ps8ribosomal protein L7, pseudogene 82212666902212667628Rat
41054813LOC120101312small nucleolar RNA SNORA172212735448212735598Rat
1306704Arhgap20l1Rho GTPase activating protein 20 like 12212831343212839635Rat
41293218Rps24-ps9ribosomal protein S24, pseudogene 92212891720212892135Rat
41349360U3l11small nucleolar RNA U3 like 112213362635213362846Rat
1594609Gypc-ps1glycophorin C, pseudogene 12213661711213662050Rat
1597150Hspa8-ps6heat shock protein family A (Hsp70) member 8, pseudogene 62213748303213750313Rat
1306531Ndst4N-deacetylase and N-sulfotransferase 42213787010214119514Rat
40969977Rpl7-ps17ribosomal protein L7, pseudogene 172213887491213889898Rat
3938Ugt8UDP glycosyltransferase 82214264483214332769Rat
1591950Hsp90ab1-ps9heat shock protein 90 alpha family class B member 1, pseudogene 92214413390214415054Rat
1307640Arsjarylsulfatase family, member J2214774631214854614Rat
11463850LOC108350105uncharacterized LOC1083501052214785288214802331Rat
1593375Hint1-ps2histidine triad nucleotide binding protein 1, pseudogene 22214895737214904381Rat
2263Camk2dcalcium/calmodulin-dependent protein kinase II delta2215023785215287351Rat
620156Ank2ankyrin 22215378028215954015Rat
41269243LOC120101321small nucleolar RNA SNORA172215462676215462807Rat
41145705LOC120101096uncharacterized LOC1201010962215611948215616858Rat
41024232LOC120101097uncharacterized LOC1201010972215724744215740139Rat
41400624Trnav-aac18transfer RNA valine (anticodon AAC) 182215838478215838559Rat
41176776LOC120101095uncharacterized LOC1201010952215862917215883604Rat
1592474Larp7La ribonucleoprotein 7, transcriptional regulator2215997641216012833Rat
1305834Zgrf1zinc finger, GRF-type containing 12216012911216075608Rat
1309061Neurog2neurogenin 22216092709216095276Rat
1304613Alpk1alpha-kinase 12216126939216247180Rat
9154798Ndufb3l2NADH:ubiquinone oxidoreductase subunit B3 like 22216164030216164560Rat
41077523Rpl29-ps5ribosomal protein L29, pseudogene 52216165804216166270Rat
1359151TifaTRAF-interacting protein with forkhead-associated domain2216257926216267635Rat
1311435Ap1aradaptor-related protein complex 1 associated regulatory protein2216276631216309020Rat
40971331Trnaa-agc70transfer RNA alanine (anticodon AGC) 702216300514216300586Rat
1593351Fam241afamily with sequence similarity 241 member A2216344563216375193Rat
41322125LOC120101099uncharacterized LOC1201010992216394260216402371Rat
1565088Tmem258l1transmembrane protein 258 like 12216443294216443612Rat
11427815Rpl21l2ribosomal protein L21 like 22216500790216501303Rat
41348865LOC120101100histone H3.v1-like2216761898216786397Rat
11446748Rpl29l9ribosomal protein L29 like 92217092889217093275Rat
41007455LOC120101128U4 spliceosomal RNA2217231673217231818Rat
41362352LOC120100617uncharacterized LOC1201006172217253485217281761Rat
2320329Oat-ps1ornithine aminotransferase, pseudogene 12217318433217320112Rat
11389356LOC108350289uncharacterized LOC1083502892217657731217658469Rat
3331Pitx2paired-like homeodomain 22217717738217737293Rat
621228Enpepglutamyl aminopeptidase2217781985217851947Rat
41094358Psmb7-ps1proteasome 20S subunit beta 7, pseudogene 12217969270217970788Rat
628880Dcm5Dcm5 protein2218001929218002696Rat
620585Elovl6ELOVL fatty acid elongase 62218063682218174767Rat
2542Egfepidermal growth factor2218219408218302359Rat
1559637Lrit3leucine-rich repeat, Ig-like and transmembrane domains 32218337215218360318Rat
1308948Rrhretinal pigment epithelium derived rhodopsin homolog2218362195218374387Rat
1563995Gar1GAR1 ribonucleoprotein2218375231218382509Rat
620429Cficomplement factor I2218389079218430565Rat
40944945LOC120100942uncharacterized LOC1201009422218425674218436350Rat
1304662Pla2g12aphospholipase A2, group XIIA2218436497218452742Rat
70967Casp6caspase 62218466063218478503Rat
1305326Mcubmitochondrial calcium uniporter dominant negative subunit beta2218479301218549594Rat
1309358Sec24bSEC24 homolog B, COPII coat complex component2218562670218632753Rat
41155962Trnak-uuutransfer RNA lysine (anticodon UUU)2218650664218650736Rat
1590105Col25a1collagen type XXV alpha 1 chain2218755152219154348Rat
41087078LOC120101132U4 spliceosomal RNA2218893592218893722Rat
9069995LOC103691705uncharacterized LOC1036917052218954901218962050Rat
1590098Etnpplethanolamine-phosphate phospho-lyase2219173048219194646Rat
1560708Ostcoligosaccharyltransferase complex non-catalytic subunit2219250549219266076Rat
1309402Rpl34ribosomal protein L342219284373219288108Rat
11382083LOC108350107uncharacterized LOC1083501072219349441219359449Rat
11410644Rpl21l1ribosomal protein L21 like 12219385207219385771Rat
11422469LOC108350291uncharacterized LOC1083502912219431270219437628Rat
41394203LOC120100619uncharacterized LOC1201006192219439426219441145Rat
620241Lef1lymphoid enhancer binding factor 12219666549219779815Rat
9101519Lef1llymphoid enhancer binding factor 1 like2219691441219701617Rat
41380471LOC120100943uncharacterized LOC1201009432219711951219713218Rat
69321Hadhhydroxyacyl-CoA dehydrogenase2219787935219830335Rat
1309433Cyp2u1cytochrome P450, family 2, subfamily u, polypeptide 12219849403219866959Rat
7625966Aimp1-ps1aminoacyl tRNA synthetase complex-interacting multifunctional protein 1, pseudogene 12219855905219864052Rat
1305778Sgms2sphingomyelin synthase 22219889809219967704Rat
11404996LOC108350108uncharacterized LOC1083501082219916828219934897Rat
41260335LOC120100944uncharacterized LOC1201009442219976241219979672Rat
41156518Pbdc1-ps2polysaccharide biosynthesis domain containing 1, pseudogene 22220020063220022513Rat
1308081Papss13'-phosphoadenosine 5'-phosphosulfate synthase 12220040343220114399Rat
40994666Rnvu1-6RNA, variant U1 small nuclear 62220206250220206413Rat
1594188Actr10-ps1actin related protein 10, pseudogene 12220553641220554855Rat
1308639Dkk2dickkopf WNT signaling pathway inhibitor 22220568338220660225Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34495D2Mgh291442218414747218414891Ratregion
36173D10Rat231552215377404215377559Ratregion
37532D2Rat1481722209616310209616482Ratregion
35290D2Rat601452214226044214226187Ratregion
36876D2Rat881402213594355213594495Ratregion
36994D2Rat581152210769803210769918Ratregion
34884D2Rat571592210020726210020885Ratregion
35599D2Rat821592206312063206312224Ratregion
35613D2Rat591352212549332212549467Ratregion
35849D2Rat621732219753301219753474Ratregion
35887D2Rat561952212072364212072559Ratregion
39878D2Rat2422182211674003211674221Ratregion
38466D2Rat1182142206665645206665859Ratregion
38566D2Rat1211922210020720210020912Ratregion
40152D2Rat2431622212719781212719943Ratregion
38942D2Rat1562022219003602219003804Ratregion
42619D2Rat3581992207975291207975490Ratregion
42620D2Rat3821372211883385211883522Ratregion
42621D2Rat3592262211137871211138097Ratregion
42622D2Rat3602142215641574215641788Ratregion
42623D2Rat2911732216155848216156021Ratregion
42624D2Rat3611512219363866219364017Ratregion
42626D2Rat3902002217480645217480845Ratregion
43582D2Got1452742207071189207071463Ratregion
43588D2Got1472752212281264212281539Ratregion
43590D2Got1461752210525750210525927Ratregion
43592D2Got1571662212516908212517074Ratregion
43594D2Got1512222216688335216688557Ratregion
43595D2Got1931132215707839215707952Ratregion
43596D2Got1541322218214633218214765Ratregion
43598D2Got1522802215185542215185822Ratregion
43599D2Got1502732217254731217255004Ratregion
43600D2Got1482232216633522216633745Ratregion
43601D2Got1551692215169809215169980Ratregion
43603D2Got1531442215983410215983554Ratregion
43604D2Got1922512215185563215185814Ratregion
45595D18Got32812211768247211768497Ratregion
60293D2Got1421992206534431206534634Ratregion
60294D2Got1442612206584378206584639Ratregion
60295D2Got1491542213652863213653017Ratregion
62500D2Uia71582211692571211692729Ratregion
66474D2Uia122212220360923220361140Ratregion
67314D2Arb232992209852836209853134Ratregion
67315D2Arb243112212696524212696837Ratregion
67328D2Arb391432210016069210016212Ratregion
67794D2Uwm101422206849322206849464Ratregion
1630255D2Got3551522220302444220302596Ratregion
1631332D2Got4032392215894624215894860Ratregion
1631473D2Wox641772210855826210856003Ratregion
1628308D2Wox672402217853183217853423Ratregion
1639353D2Got4242122212510656212510870Ratregion
1639367D2Ulb152892218904568218904859Ratregion
1632674D2Got3672072220130961220131168Ratregion
1633398D2Ulb141712218904568218904741Ratregion
1640232D2Wox693502212696518212696870Ratregion
1637146D2Got395992207207297207207396Ratregion
1633684D2Got3561282220302464220302592Ratregion
7364904rs10746442802217906389217906389Ratregion
7364906rs6505718602210463377210463377Ratregion
7364907rs1345378602215613858215613858Ratregion
8693316rs1057769942217139753217139753Ratregion
5036135D10Bir123342219564514219564848Ratregion
5039252RH1275991862209549845209550031Ratregion
5036841AU0493801122210161373210161485Ratregion
5033847RH1403391412218563243218563384Ratregion
5033965RH1407852212211002694211002915Ratregion
5025968RH1303932032210482073210482276Ratregion
5034019RH1410492202218562765218562985Ratregion
5026130RH1310271992215997862215998061Ratregion
5029185RH1438361022207824571207824673Ratregion
5034518BI2742791752211530900211531075Ratregion
5034604AW5209622112207474441207474652Ratregion
5034636BF3905141552215430667215430822Ratregion
5032076D3Mit1421482206489414206489562Ratregion
5026826RH1336791812218362369218362550Ratregion
5032257AI6624582672209233822209234089Ratregion
5027163WI-215702662214853226214853492Ratregion
5027257AW491075932215378422215378515Ratregion
5032817RH1354112112215861970215862181Ratregion
5030165BF4011251112209714143209714254Ratregion
5030177BF3959051292211004092211004221Ratregion
5032999RH1372391962210386036210386232Ratregion
5033051RH1374091892206719620206719809Ratregion
5025256RH1276171892216276952216277141Ratregion
502782905.MMHAP26FLB2.seq1082207592145207592253Ratregion
502788722.MMHAP18FLH1.seq1522216596777216596931Ratregion
5025324RH1278801822210366861210367043Ratregion
5025362RH1280222012209549320209549521Ratregion
5030629AI5007512012215777572215777773Ratregion
5030647BI3015831512214169569214169720Ratregion
5025484RH1285001872218174330218174517Ratregion
5025484RH1285001872218174330218174517Ratregion
5025528RH1286712092209852127209852336Ratregion
5028089X586361642219778709219778873Ratregion
5025664RH1291871862220114160220114346Ratregion
5025924RH1302202062219787950219788156Ratregion
5025930RH1302421802211685083211685263Ratregion
5051925RH947371672215287052215287219Ratregion
5055139RH1436281022219830486219830588Ratregion
5056119RH1441938062216281745216282551Ratregion
5056317RH1443091652209341565209341730Ratregion
5056873RH1446301722219296403219296575Ratregion
5051801RH946662652218302670218302935Ratregion
5051801RH946662652218302670218302935Ratregion
5052027RH947972742211039803211040077Ratregion
5054067RH1430121242215776176215776300Ratregion
5057504AW5223701332218372715218372848Ratregion
5055419RH1437901222211059276211059398Ratregion
5054639RH1433402422210387166210387408Ratregion
5054671RH1433582062211215382211215588Ratregion
5059444AW5308421832218809153218809336Ratregion
5059498BE0970961972216075369216075566Ratregion
5055539RH1438591302209542595209542725Ratregion
5055543RH1438621522219401750219401902Ratregion
5056715RH1445382182215283280215283498Ratregion
5056423RH1443692582215636683215636941Ratregion
5052365X921221482214266036214266184Ratregion
5058042BE1018481512215402476215402627Ratregion
5058076BF3865651972219205007219205204Ratregion
5058176BF3867561842209912812209912996Ratregion
5059742BE0977251932215678659215678852Ratregion
5053155RH1424851742209527968209528142Ratregion
5059308AI0719941822220660460220660642Ratregion
5050680RH1341961842218306543218306727Ratregion
5050680RH1341961842218306543218306727Ratregion
5050020RH1338161932210647337210647530Ratregion
5050158RH1338952182217782221217782439Ratregion
5050206RH1339222072219779447219779654Ratregion
5050344RH1340022122210301835210302047Ratregion
5051254RH1345281992209445001209445200Ratregion
5054393RH1431989502210228530210229480Ratregion
5051761RH946431912209838148209838339Ratregion
5051803RH946671542209852706209852860Ratregion
5051807RH946691862210367151210367337Ratregion
5044970RH1309082162211253602211253818Ratregion
5046112RH1315652022210479322210479524Ratregion
5045378RH1311441542216282088216282242Ratregion
5048840RH1331361872215248511215248698Ratregion
5049260RH1333781962210132160210132356Ratregion
5049264RH1333802182218219545218219763Ratregion
5039424RH1276982172219250684219250901Ratregion
5039606RH1278021802211057462211057642Ratregion
5048486RH1329312022215585818215586020Ratregion
5048524RH1329532982209809152209809450Ratregion
5040034RH1280522022218452422218452624Ratregion
5040282RH1281941992219862686219862886Ratregion
5042694RH1295902022210367720210367922Ratregion
5039892RH1279681972211213921211214118Ratregion
5042424RH1294261812209549874209550055Ratregion
5040894RH1285442102218430201218430411Ratregion
5075570RH1386702442216164169216164413Ratregion
5072428RH1368431812210638326210638507Ratregion
5074376RH1379812072218171996218172203Ratregion
5074376RH1379812072218171996218172203Ratregion
5076748RH1393551572220658840220658997Ratregion
5075362RH1385501342210675441210675575Ratregion
5076020RH1389321502215064808215064958Ratregion
5076614RH1392782262216129254216129480Ratregion
5076774RH139370602210371823210371883Ratregion
5076778RH1393731492211530774211530923Ratregion
5079626RH1411101832218101990218102173Ratregion
5079626RH1411101832218101990218102173Ratregion
5077488RH1397851822209285018209285200Ratregion
5078604RH1404401162211330292211330408Ratregion
5072858RH1370951872219788003219788190Ratregion
5079230RH1408118232210384579210385402Ratregion
5071150RH1349167252218479392218480117Ratregion
5080398RH1415561802215487784215487964Ratregion
5078694RH1404961682216344097216344265Ratregion
5078910RH1406221602211002846211003006Ratregion
5071966RH1353882132209837999209838212Ratregion
5074312RH1379442532209233745209233998Ratregion
5073588RH1375231532209236101209236254Ratregion
5072354RH1368011202214264648214264768Ratregion
5065026BE1089471502216071611216071761Ratregion
5066668AU0482211812208093094208093275Ratregion
5066952AU0480532472207631919207632161Ratregion
5068244AU0472631392213707958213708097Ratregion
5068408AU0471642062213033845213034051Ratregion
5069428AU0465061132207763417207763530Ratregion
5063634BF4044461932206519794206519987Ratregion
5060394BI2920982002211249100211249300Ratregion
5065486BF4122611282219531162219531290Ratregion
5065426BE1154621512211537181211537332Ratregion
5060368AW5318301512209446397209446548Ratregion
5064282BE1209791652218476389218476554Ratregion
5061180BE1111461962217819206217819402Ratregion
5064616BF3994501632215860407215860570Ratregion
5063144BI3013551702212259149212259319Ratregion
5063234BF4105441582208945660208945818Ratregion
5061550BF3966701832216290427216290610Ratregion
5087165AI0094061912211141662211141853Ratregion
5086516BQ2056921982214115145214115343Ratregion
5089747AU0493392292207259428207259657Ratregion
5089153AU0489861072216236922216236955Ratregion
5089903AU0494322032211364935211365138Ratregion
5088036Papss12142220113737220113952Ratregion
5090113AU049557992220610890220610991Ratregion
5087622PMC61071P2792211041422211041501Ratregion
5082071BF4093511262209314980209315106Ratregion
5082167BI2802261822211141632211141814Ratregion
5085353BQ1959501882219813422219813610Ratregion
5085489BM3831451862217678377217678561Ratregion
5080920RH1418592092209826035209826244Ratregion
5088709AU0487301982217868637217868835Ratregion
5081278RH1420681812209958913209959094Ratregion
5081288RH1420742192210721254210721473Ratregion
5081196RH1420201862209288652209288838Ratregion
5081651BF4144221682206528906206529074Ratregion
5085202BE0964081592219853715219853874Ratregion
5503764UniSTS:470670732216094019216094092Ratregion
5504155D17Jcs979502219458773219459723Ratregion
5504839ha23446812210135560210136241Ratregion
5505833Ugt8a2622214266341214266603Ratregion
5506123UniSTS:498418742219893918219893992Ratregion
5506839G464082182220077542220077760Ratregion
5506563PITX2_3808572217736443217737300Ratregion
5507103UniSTS:2245871892213085900213086089Ratregion
5499821UniSTS:234818892211510769211510858Ratregion
5500198SHGC-15234702216216319216216437Ratregion
5500198SHGC-15234702216216337216216437Ratregion
5500218AU0458848062210384579210385385Ratregion
5503841Dkk21062220569176220569282Ratregion
5501536RH694315912219760126219760717Ratregion
5501952MARC_20744-20745:1025020999:102218568023218569252Ratregion
5502395RH124727862210384579210384665Ratregion
152025244rs10727944502206936711206936711Ratregion
Position Markers

Flank 1: (D2Rat82)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22206,312,063 - 206,312,224 (+)MAPPER
Rnor_6.02221,488,355 - 221,488,513NCBI
Rnor_5.02239,538,172 - 239,538,330UniSTS
RGSC_v3.42214,633,710 - 214,633,868UniSTS
RGSC_v3.42214,633,709 - 214,633,868RGD
RGSC_v3.12214,596,772 - 214,596,930RGD
Celera2198,786,215 - 198,786,373UniSTS
RH 3.4 Map21490.2UniSTS
RH 3.4 Map21490.2RGD
FHH x ACI Map292.0799UniSTS
FHH x ACI Map292.0799RGD
Peak: (D2Rat88)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22213,594,355 - 213,594,495 (+)MAPPER
Rnor_6.02228,984,526 - 228,984,665NCBI
Rnor_5.02248,335,840 - 248,335,979UniSTS
RGSC_v3.42222,281,737 - 222,281,876UniSTS
RGSC_v3.42222,281,658 - 222,281,918RGD
RGSC_v3.12222,268,417 - 222,268,556RGD
Celera2205,951,680 - 205,951,819UniSTS
RH 3.4 Map21546.5UniSTS
RH 3.4 Map21546.5RGD
SHRSP x BN Map284.0698UniSTS
SHRSP x BN Map284.0698RGD
Flank 2: (D2Rat69)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02254,121,593 - 254,121,739NCBI
Rnor_5.02272,813,816 - 272,813,962UniSTS
RGSC_v3.42247,295,669 - 247,295,816RGD
RGSC_v3.42247,295,670 - 247,295,816UniSTS
RGSC_v3.12247,310,276 - 247,310,423RGD
Celera2229,879,373 - 229,879,519UniSTS
RH 2.0 Map21076.7RGD
SHRSP x BN Map2106.7499RGD
Cytogenetic Map2q45UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2206665645219003804Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2299161Iddm33Insulin dependent diabetes mellitus QTL 332.98blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2206312063220876787Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general software used: R/QTL and QTL Cartographer 2303106
qtl_general number of animals used: 574 animals which were negative for glycosuria until 165 days 2303106