Eau9 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Eau9 (Experimental allergic uveoretinitis QTL 9) Rattus norvegicus

Symbol: Eau9
Name: Experimental allergic uveoretinitis QTL 9
RGD ID: 2298481
Trait: uvea integrity trait   (VT:0010551)    
Measurement Type: experimental autoimmune uveitis score   (CMO:0001504)    
LOD Score: Not Available
P Value: 0.0169
Variance: Not Available
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21065,927,233 - 82,565,079RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01068,305,037 - 85,514,044RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01067,971,352 - 85,302,564RGDRnor5.0
RGSC_v3.41069,160,380 - 86,317,054RGDRGSC3.4
Cross Type: intercross
Strains Crossed: F344/NHsd LEW/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Nos2 is a candidate Gene for Eau9
Ccl11 is a candidate Gene for Eau9
Ccl2 is a candidate Gene for Eau9
Ccl3 is a candidate Gene for Eau9
Hnf1b is a candidate Gene for Eau9
Ccl5 is a candidate Gene for Eau9
Ccl4 is a candidate Gene for Eau9
Cdk5r1 is a candidate Gene for Eau9

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NHsd  (IEA)
LEW/NHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Common genetic determinants of uveitis shared with other autoimmune disorders. Mattapallil MJ, etal., J Immunol. 2008 May 15;180(10):6751-9.
Related QTLs

Related QTL Description Reference
Eae18 maps to same region RGD:2296064


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2017Asic2acid sensing ion channel subunit 2106587059266940577Rat
40986121Rangrf-ps1RAN guanine nucleotide release factor, pseudogene 1106615533966178353Rat
11437457LOC10835220760S ribosomal protein L35a pseudogene106621006366210640Rat
41059526LOC120095274uncharacterized LOC120095274106629879266399056Rat
1560058Phb1-ps1prohibitin 1, pseudogene 1106654646966547373Rat
7489011Mir6327microRNA 6327106659835166598483Rat
40996120Gapdh-ps43Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 43106680369166804868Rat
41188203LOC120095275uncharacterized LOC120095275106689240166906045Rat
11435226LOC108352208uncharacterized LOC108352208106694046266956291Rat
41029759LOC120095330uncharacterized LOC120095330106698077866983438Rat
3645Ccl2C-C motif chemokine ligand 2106700542467007222Rat
41308304LOC120095154uncharacterized LOC120095154106701597867070280Rat
1359152Ccl7C-C motif chemokine ligand 7106701644667018296Rat
3644Ccl11C-C motif chemokine ligand 11106702832867032929Rat
1309255Ccl12C-C motif chemokine ligand 12106707023067071780Rat
1586495Ccl1C-C motif chemokine ligand 1106712833167131109Rat
1565522Tmem132etransmembrane protein 132E106732934767386790Rat
41176308LOC120095155uncharacterized LOC120095155106750811867610797Rat
1359453Cct6bchaperonin containing TCP1 subunit 6B106765246167701385Rat
11472642LOC108352113transcription factor BTF3 homolog 4 pseudogene106766269967670029Rat
1562573Zfp830zinc finger protein 830106770134067702804Rat
7607868LOC102547954uncharacterized LOC102547954106771659967717654Rat
1309875Lig3DNA ligase 3106771779667741141Rat
727916Rfflring finger and FYVE-like domain containing E3 ubiquitin protein ligase106774071167803694Rat
1306944Rad51dRAD51 paralog D106780572067824452Rat
1310708Fndc8fibronectin type III domain containing 8106782595267834090Rat
41195735LOC120095352U6 spliceosomal RNA106782724167827353Rat
1308301Nle1notchless homolog 1106783405967844771Rat
1305666Unc45bunc-45 myosin chaperone B106784538267873389Rat
1312025Slfn5schlafen family member 5106788106867895013Rat
1359139Slfn13schlafen family member 13106790910567955912Rat
7628561Gapdh-ps38Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 38106791199467914600Rat
40964229Rpl5-ps9ribosomal protein L5, pseudogene 9106791364967914568Rat
11366402LOC108352183spindle and kinetochore-associated protein 2 pseudogene106793279067950325Rat
1308645Slfn2schlafen family member 2106795332267959659Rat
1583007Slfn1schlafen family member 1106795343067983287Rat
620455Slfn4schlafen family member 4106799460168018141Rat
1582982LOC688925similar to Glutathione S-transferase alpha-4106800729768007919Rat
1564411Slfn3schlafen family member 3106802048268060248Rat
7614463LOC102556120schlafen family member 12-like106806463668068031Rat
40937372LOC120095157uncharacterized LOC120095157106807193568092771Rat
41116338LOC120095481U2 spliceosomal RNA106807250568072695Rat
1561538Slfn14schlafen family member 14106807632668087794Rat
11414676LOC10835342540S ribosomal protein S27-like106808969468089966Rat
40983522Snord7small nucleolar RNA, C/D box 7106809501568095110Rat
620757Pex12peroxisomal biogenesis factor 12106809577668103812Rat
71048Ap2b1adaptor related protein complex 2 subunit beta 1106809939768205023Rat
41280740LOC120095451small nucleolar RNA SNORA17106816480068164929Rat
1310873Rasl10bRAS-like, family 10, member B106820976168222118Rat
1307868Gas2l2growth arrest-specific 2 like 2106822247568229877Rat
1597447LOC689039hypothetical protein LOC689039106823886068242437Rat
1311573Mmp28matrix metallopeptidase 28106824374868264728Rat
41041079LOC120095158uncharacterized LOC120095158106824623968252736Rat
1309595Taf15TATA-box binding protein associated factor 15106827290068304951Rat
1559875Heatr9HEAT repeat containing 9106830912868320650Rat
69069Ccl5C-C motif chemokine ligand 5106832282668327365Rat
1310563Ccl9C-C motif chemokine ligand 9106836648668371408Rat
9290621LOC103693406uncharacterized LOC103693406106837370368420846Rat
41203172Rpl30-ps12ribosomal protein L30, pseudogene 12106837771268379824Rat
1303200Ccl6C-C motif chemokine ligand 6106838117968385811Rat
41128103LOC120095160uncharacterized LOC120095160106842930868449516Rat
3647Ccl3C-C motif chemokine ligand 3106845138868452938Rat
620441Ccl4C-C motif chemokine ligand 4106846646968467941Rat
41059947LOC120095331uncharacterized LOC120095331106848104268483376Rat
6502228LOC100909660extracellular peptidase inhibitor-like106853903568541169Rat
41388070LOC120095161uncharacterized LOC120095161106854261068547441Rat
2318138Anos1anosmin 1106856195468562801Rat
619957Wfdc18WAP four-disulfide core domain 18106858881868590972Rat
2318090Anos1-ps1anosmin 1, pseudogene 1106859383768594709Rat
1303147Wfdc21WAP four-disulfide core domain 21106862783668633705Rat
1566204Heatr6HEAT repeat containing 6106863485568665445Rat
3830Hnf1bHNF1 homeobox B106873589468789888Rat
621743Ddx52DExD-box helicase 52106882459468847400Rat
620684Synrgsynergin, gamma106884882868931252Rat
7502825Ac1576uncharacterized LOC102552783106891483068931682Rat
1307415Dusp14dual specificity phosphatase 14106893648368966347Rat
7632735Rps15a-ps2ribosomal protein S15a, pseudogene 2106895205268952509Rat
1309959Tada2atranscriptional adaptor 2A106896650269014149Rat
621248Acacaacetyl-CoA carboxylase alpha106901426169276453Rat
7517962LOC102552988uncharacterized LOC102552988106903488769054100Rat
41117163Rpl17-ps8ribosomal protein L17, pseudogene 8106905654669057234Rat
620685Aatfapoptosis antagonizing transcription factor106929902969392207Rat
71074Lhx1LIM homeobox 1106939682969403617Rat
7595653LOC102553190uncharacterized LOC102553190106940451069414681Rat
1566232Mrm1mitochondrial rRNA methyltransferase 1106969040669697326Rat
1307935Dhrs11dehydrogenase/reductase 11106969821469708294Rat
7518044Ube2i-ps4ubiquitin-conjugating enzyme E2I, pseudogene 4106970188169702956Rat
1302978Ggnbp2gametogenetin binding protein 2106971152769743134Rat
727962Pigwphosphatidylinositol glycan anchor biosynthesis, class W106974699669782656Rat
1559961Myo19myosin XIX106975308269782450Rat
1598226Znhit3zinc finger, HIT-type containing 3106977588569790471Rat
40973139LOC120095499U6 spliceosomal RNA106979847869798584Rat
2324311Cox7b-ps4cytochrome c oxidase subunit 7B, pseudogene 4106980229669803207Rat
2242Car4carbonic anhydrase 4106982794569836501Rat
1592359Rpl37a-ps3ribosomal protein L37A, pseudogene 3106983830469838667Rat
1306657Usp32ubiquitin specific peptidase 32106985588570029075Rat
41358241Dab1-ps1DAB adaptor protein 1, pseudogene 1106993225069934885Rat
1310166Chct1CHD1 helical C-terminal domain containing 1107003951070051556Rat
1306488Appbp2amyloid beta precursor protein binding protein 2107005777470099877Rat
1305460Ppm1dprotein phosphatase, Mg2+/Mn2+ dependent, 1D107017260370208607Rat
1560788Bcas3BCAS3, microtubule associated cell migration factor107021371070673080Rat
7568005LOC102554092uncharacterized LOC102554092107065647670679439Rat
1311014Tbx2T-box transcription factor 2107067967070688868Rat
1309057Tbx4T-box transcription factor 4107073068670760829Rat
1307659Brip1BRCA1 interacting helicase 1107090726671031502Rat
40971346Trnav-aac22transfer RNA valine (anticodon AAC) 22107095650370956575Rat
1305547Ints2integrator complex subunit 2107103164771079138Rat
1304829Med13mediator complex subunit 13107108697871176535Rat
41033403LOC120095332uncharacterized LOC120095332107124763471250157Rat
41293538LOC120095364U6 spliceosomal RNA107126266271262766Rat
1562411Rnft1ring finger protein, transmembrane 1107131005271322507Rat
620683Rps6kb1ribosomal protein S6 kinase B1107132377771367908Rat
41393408LOC120095162uncharacterized LOC120095162107134443571366373Rat
1311967Tubd1tubulin, delta 1107136793671391387Rat
70367Vmp1vacuole membrane protein 1107140505871505045Rat
2325598Mir21microRNA 21107140525771405348Rat
1306819Ptrh2peptidyl-tRNA hydrolase 2107150511371515297Rat
2364Cltcclathrin heavy chain107151766171574591Rat
1359618Dhx40DEAH-box helicase 40107158454671621479Rat
41062475LOC120095163uncharacterized LOC120095163107165620171659142Rat
9226275LOC103693408uncharacterized LOC103693408107165917271663392Rat
41089124LOC120095164uncharacterized LOC120095164107169038771708506Rat
1311564Ypel2yippee-like 2107174630871803855Rat
1311813Gdpd1glycerophosphodiester phosphodiesterase domain containing 1107184049771883936Rat
7748685Ifitm1-ps1interferon induced transmembrane protein 1, pseudogene 1107185252571854443Rat
41161246LOC120095167uncharacterized LOC120095167107188412771892284Rat
1306862Smg8SMG8 nonsense mediated mRNA decay factor107188674271895780Rat
1561541Prr11proline rich 11107189885871943325Rat
1307084Ska2spindle and kinetochore associated complex subunit 2107192147471939461Rat
40939305LOC120095166uncharacterized LOC120095166107192169171926768Rat
2325405Mir301amicroRNA 301a107192533671925435Rat
1308349Trim37tripartite motif-containing 37107194338472075567Rat
735028Ppm1eprotein phosphatase, Mg2+/Mn2+ dependent, 1E107205164372187439Rat
41130763Gapdh-ps42Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 42107212971272130772Rat
41154135LOC120095391small nucleolar RNA SNORA70107213422572134346Rat
41243160LOC120095359U6 spliceosomal RNA107214793172148037Rat
1563765Rad51cRAD51 paralog C107220503272231643Rat
1305437Tex14testis expressed 14, intercellular bridge forming factor107223176672356938Rat
11451344Trnan-guu9transfer RNA asparagine (anticodon GUU) 9107224297072243043Rat
41186195LOC120095396U1 spliceosomal RNA107224612572246288Rat
41035616LOC120095385U1 spliceosomal RNA107224987172250034Rat
40980517LOC120095490small nucleolar RNA U3107226503872265252Rat
41280008LOC120095496U4 spliceosomal RNA107227127372271444Rat
41210266LOC120095489small nucleolar RNA U3107227253972272753Rat
41396155LOC120095168zinc finger protein OZF-like107227465472277596Rat
41390802LOC120095491small nucleolar RNA U3107228511272285326Rat
1308781Septin4septin 4107236672972390764Rat
1310306Mtmr4myotubularin related protein 4107239341172416342Rat
1592448Hsf5heat shock transcription factor 5107241721672460394Rat
1305204Rnf43ring finger protein 43107246150872535977Rat
41020299LOC120095369U6 spliceosomal RNA107249647272496575Rat
1306372Supt4h1SPT4 homolog, DSIF elongation factor subunit107253932372545582Rat
708563Tspoap1TSPO associated protein 1107255422072586402Rat
2325567Mir142microRNA 142107255786472557950Rat
1592081Mpomyeloperoxidase107259445872608862Rat
1310051Lpolactoperoxidase107260694472626535Rat
1565186Mks1MKS transition zone complex subunit 1107265592172667007Rat
1311882Epxeosinophil peroxidase107266686572677952Rat
1333783Or4d2bolfactory receptor family 4 subfamily D member 2B107269301472693949Rat
1332601Or4d2olfactory receptor family 4 subfamily D member 2107269711572698050Rat
1333064Olr1523olfactory receptor 1523107270827272709213Rat
619860Dynll2dynein light chain LC8-type 2107276703572785824Rat
41042236LOC120095169uncharacterized LOC120095169107278596072790325Rat
1587490Srsf1serine and arginine rich splicing factor 1107283892672859066Rat
1308058Vezf1vascular endothelial zinc finger 1107285966972876111Rat
1304861Cuedc1CUE domain containing 1107289263772986546Rat
9259835LOC103693410uncharacterized LOC103693410107292287072928564Rat
1586365Rpl27a-ps10ribosomal protein L27a,pseudogene 10107292864072929715Rat
41281375LOC120095170uncharacterized LOC120095170107293286972935189Rat
1306963Mrps23mitochondrial ribosomal protein S23107299903373006791Rat
1586338Ccdc182coiled-coil domain containing 182107309022873091040Rat
7613436LOC102557529uncharacterized LOC102557529107310226273112961Rat
1560397Msi2musashi RNA-binding protein 2107314376073510566Rat
620826Akap1A-kinase anchoring protein 1107362102173654123Rat
41220484LOC120095503U6 spliceosomal RNA107367788973677995Rat
1592080Ndufa13-ps2NADH:ubiquinone oxidoreductase subunit A13, pseudogene 2107368790473688917Rat
620067Scpep1serine carboxypeptidase 1107370327573732892Rat
40953467LOC120095171uncharacterized LOC120095171107372350473725411Rat
1304870Elob-ps4elongin B, pseduogene 4107374968573750358Rat
2322220LOC100363835transcription elongation factor B (SIII), polypeptide 2-like107375751773758022Rat
1564031RGD1564031similar to transcription elongation factor B (SIII), polypeptide 2107376564173765970Rat
6489971LOC100911861transcription elongation factor B polypeptide 2-like107377428673774648Rat
1562272RGD1562272similar to TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor107378128173783163Rat
62031Coilcoilin107378907773810378Rat
1594396Trim25tripartite motif-containing 25107381281873831271Rat
41202203LOC120095172uncharacterized LOC120095172107384653273852817Rat
1560914Dgkediacylglycerol kinase epsilon107385267973877334Rat
1592433C10h17orf67similar to human chromosome 17 open reading frame 67107389534373916133Rat
41375225LOC120095466U6atac minor spliceosomal RNA107391064073910741Rat
41121724LOC120095173uncharacterized LOC120095173107401499674018744Rat
7502415LOC102547753uncharacterized LOC102547753107412453474133881Rat
3183Nognoggin107412871274130339Rat
7736477Ankfn1ankyrin-repeat and fibronectin type III domain containing 1107421414374602825Rat
41039235LOC120095174uncharacterized LOC120095174107447460174484980Rat
3276Pctpphosphatidylcholine transfer protein107480888774856260Rat
1560541Tmem100transmembrane protein 100107485477974861147Rat
9277135LOC103693415uncharacterized LOC103693415107486760574896150Rat
1592079Mmdmonocyte to macrophage differentiation-associated107507327875101528Rat
1582828HlfHLF transcription factor, PAR bZIP family member107515424475211884Rat
1307903Stxbp4syntaxin binding protein 4107530186875458741Rat
9174727Cox11cytochrome c oxidase copper chaperone COX11107545873575465322Rat
1562626Tom1l1target of myb1 like 1 membrane trafficking protein107546457775508304Rat
2323022LOC100363423rCG35357-like107550835475514764Rat
41213596Trnaa-agc51transfer RNA alanine (anticodon AGC) 51107558624175586315Rat
41357294LOC120095456small nucleolar RNA SNORA17107560813475608254Rat
7629087LOC102548607uncharacterized LOC102548607107565667275707890Rat
1566089LOC303448similar to glyceraldehyde-3-phosphate dehydrogenase107596050775968953Rat
7691225LOC102548673uncharacterized LOC102548673107607484076093223Rat
2322976LOC100363469ribosomal protein S24-like107628936576289879Rat
1359248Kif2bkinesin family member 2B107639416076396379Rat
11370322LOC108352225uncharacterized LOC108352225107650095376507259Rat
41295422LOC120095175uncharacterized LOC120095175107715506277216511Rat
1594586Gapdh-ps107Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 107107724356177246188Rat
41003664Ldha-ps29lactate dehydrogenase A, pseudogene 29107756372577564800Rat
41123949LOC120095176uncharacterized LOC120095176107776432977775450Rat
40981583LOC120095439small nucleolar RNA SNORA48107787377177873910Rat
2322930Car10carbonic anhydrase 10107805587578556490Rat
11413531LOC108352121uncharacterized LOC108352121107817849178189087Rat
6493616LOC100911361heterogeneous nuclear ribonucleoprotein A3-like107821773378219237Rat
11395747LOC108352122uncharacterized LOC108352122107844915678475943Rat
9384463LOC103693449ATP synthase-coupling factor 6, mitochondrial pseudogene107862542278625920Rat
9417566LOC103693420thymosin beta-10 pseudogene107871166678711911Rat
40957969LOC120095281uncharacterized LOC120095281107878300378789419Rat
1309957Utp18UTP18 small subunit processome component107881187978839338Rat
1592427Mbtd1mbt domain containing 1107883914078895413Rat
619877Nme2NME/NM23 nucleoside diphosphate kinase 2107889809778903600Rat
70497Nme1NME/NM23 nucleoside diphosphate kinase 1107890703678929659Rat
41393922Ebln1endogenous Bornavirus like nucleoprotein 1107893864578940651Rat
1311289Spag9sperm associated antigen 9107894343979077797Rat
41098788LOC120095280uncharacterized LOC120095280107909155879095803Rat
7607460LOC102555690uncharacterized LOC102555690107910421779113309Rat
621126Tob1transducer of ErbB-2.1107916309379165131Rat
1305361Wfikkn2WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2107918556379192719Rat
41070601Ankrd40clANKRD40 C-terminal like107922779179236365Rat
1307981Luc7l3LUC7-like 3 pre-mRNA splicing factor107924005079276555Rat
1594678Ankrd40ankyrin repeat domain 40107928207579295322Rat
71101Abcc3ATP binding cassette subfamily C member 3107929668179342749Rat
68942Cacna1gcalcium voltage-gated channel subunit alpha1 G107935499879422960Rat
41142250LOC120095279uncharacterized LOC120095279107935556979357242Rat
735087Spata20spermatogenesis associated 20107942752579435472Rat
1306416Epn3epsin 3107943897879449516Rat
1359123MycbpapMycbp associated protein107945031979470977Rat
11358390LOC108352211uncharacterized LOC108352211107946736679474311Rat
1592414Rsad1radical S-adenosyl methionine domain containing 1107948525379499616Rat
1562656Acsf2acyl-CoA synthetase family member 2107950451079546714Rat
2336Chadchondroadherin107951217079515941Rat
7497167LOC102555790uncharacterized LOC102555790107955293479561494Rat
1305092Lrrc59leucine rich repeat containing 59107957229579586953Rat
1309067Eme1essential meiotic structure-specific endonuclease 1107958673679595515Rat
1309090Mrpl27mitochondrial ribosomal protein L27107959545979601242Rat
619765Xylt2xylosyltransferase 2107960591079619482Rat
2321564LOC100364194transmembrane protein 92-like107970720379710867Rat
9447800LOC103693451transmembrane protein 92-like107973941479743041Rat
1593405Tmem92transmembrane protein 92107974924279760807Rat
9338508Tmem92-ps1transmembrane protein 92, pseudogene 1107976719279769848Rat
11375592LOC108352184transmembrane protein 92-like107979551079799340Rat
1563563Ppid-ps13peptidylprolyl isomerase D, pseudogene 13107980080779804238Rat
7694663LOC102556395uncharacterized LOC102556395107987220979881942Rat
61817Col1a1collagen type I alpha 1 chain107988362279900625Rat
1308062Sgcasarcoglycan, alpha107990469879922813Rat
1585185Hils1histone linker H1 domain, spermatid-specific 1107991352579914321Rat
7503661LOC102557019uncharacterized LOC102557019107991863579929063Rat
632281Ppp1r9bprotein phosphatase 1, regulatory subunit 9B107993805579954085Rat
1306138Samd14sterile alpha motif domain containing 14107995711179972347Rat
69428Pdk2pyruvate dehydrogenase kinase 2107997255079987074Rat
41049107LOC120095177uncharacterized LOC120095177107998469279986134Rat
1310333Itga3integrin subunit alpha 3107999016080022206Rat
7668130LOC102546327uncharacterized LOC102546327108002225980027875Rat
1304875Dlx3distal-less homeobox 3108006448980069891Rat
1308744Dlx4distal-less homeobox 4108008503780090434Rat
41396154LOC120095345uncharacterized LOC120095345108011400880148484Rat
628842Tac4tachykinin precursor 4108020782480216156Rat
727966Kat7lysine acetyltransferase 7108022151980255590Rat
7660262LOC102546598uncharacterized LOC102546598108025568080267072Rat
7735698LOC102546674uncharacterized LOC102546674108026445580281943Rat
1565395RGD1565395similar to stathmin 1/oncoprotein 18)108027404180274523Rat
1561062Fam117afamily with sequence similarity 117, member A108028140880325343Rat
727783Slc35b1solute carrier family 35, member B1108032792180335279Rat
41100182LOC120095178uncharacterized LOC120095178108035416680357816Rat
1311613Spopspeckle type BTB/POZ protein108035812180438983Rat
41236916LOC120095411small nucleolar RNA SNORA4108038067580380818Rat
620693Nxph3neurexophilin 3108045628380459949Rat
3177Ngfrnerve growth factor receptor108051528780533518Rat
3322Phb1prohibitin 1108060526880618043Rat
1566329Zfp652zinc finger protein 652108062655580706397Rat
41198723LOC120095179uncharacterized LOC120095179108063355380649436Rat
7503123LOC102547047uncharacterized LOC102547047108069506780762037Rat
1306182Phospho1phosphoethanolamine/phosphocholine phosphatase 1108076206280769596Rat
1311794Abi3ABI family, member 3108076981980780816Rat
1591007Gngt2G protein subunit gamma transducin 2108077600380784235Rat
11392345Trnaq-uug1transfer RNA glutamine (anticodon UUG) 1108079768580797756Rat
1592405B4galnt2beta-1,4-N-acetyl-galactosaminyl transferase 2108080159480828005Rat
1592404Rpl15-ps8ribosomal protein L15, pseudogene 8108083034580831058Rat
40954811LOC120095180uncharacterized LOC120095180108084565680859083Rat
708580Igf2bp1insulin-like growth factor 2 mRNA binding protein 1108090830080951097Rat
2709Gipgastric inhibitory polypeptide108096841080976506Rat
1310144Snf8SNF8 subunit of ESCRT-II108098433780996724Rat
2319914Psmg4-ps2proteasome assembly chaperone 4, pseudogene 2108098672680987180Rat
1308347Ube2zubiquitin-conjugating enzyme E2Z108099781681016936Rat
61933Atp5mc1ATP synthase membrane subunit c locus 1108102405681026780Rat
1559974Calcoco2calcium binding and coiled-coil domain 2108105546781069298Rat
1311922Ttll6tubulin tyrosine ligase like 6108108198581118009Rat
41252852Ttll6-ps1tubulin tyrosine ligase like 6, pseudogene 1108111951181127228Rat
1309113Hoxb13homeo box B13108116049881162777Rat
41238789LOC120095283uncharacterized LOC120095283108121741681229312Rat
2325418Mir196cmicroRNA 196c108123100681231085Rat
1306158Hoxb9homeo box B9108123731281240818Rat
1586211Hoxb8homeo box B8108124831381251261Rat
1559918Hoxb7homeo box B7108125261681256034Rat
10395317Hoxb5oshomeobox B5 and homeobox B6, opposite strand108125688081272747Rat
1562142Hoxb6homeo box B6108125872681267458Rat
1310780Hoxb3homeo box B3108125873981314134Rat
1562292Hoxb5homeo box B5108126937281271580Rat
2325601Mir10amicroRNA 10a108128317181283280Rat
1560113Hoxb4homeo box B4108128455281287134Rat
7568369LOC102550580uncharacterized LOC102550580108130931081317103Rat
2319509Hoxb2homeobox B2108131792781320223Rat
1310298Hoxb1homeo box B1108133150781332928Rat
41205404LOC120095284uncharacterized LOC120095284108135889981367940Rat
41353348LOC120095285uncharacterized LOC120095285108136191881367401Rat
708436Skap1src kinase associated phosphoprotein 1108142547281732651Rat
40987530LOC120095286uncharacterized LOC120095286108153147481538882Rat
7727790LOC102551165uncharacterized LOC102551165108153816281538800Rat
1307319Snx11sorting nexin 11108174202081752778Rat
1310714Cbx1chromobox 1108177030781789981Rat
1311972Nfe2l1NFE2 like bZIP transcription factor 1108179605581812926Rat
41013792LOC120095287uncharacterized LOC120095287108182181381824811Rat
1306948Copz2COPI coat complex subunit zeta 2108183244181845514Rat
2325564Mir152microRNA 152108183293681833020Rat
620002Cdk5rap3CDK5 regulatory subunit associated protein 3108189439381903581Rat
1592397Prr15lproline rich 15-like108191646081923092Rat
621456Pnpopyridoxamine 5'-phosphate oxidase108192458481930844Rat
7723636LOC102547955uncharacterized LOC102547955108193091281953864Rat
1592078Sp2Sp2 transcription factor108194058081970548Rat
7592610LOC102547278uncharacterized LOC102547278108196528481974238Rat
11383214LOC108352124uncharacterized LOC108352124108197872381985346Rat
1306768Sp6Sp6 transcription factor108200551882009699Rat
1307741Scrn2secernin 2108201660482020676Rat
1303311Lrrc46leucine rich repeat containing 46108202131482033575Rat
1588626Mrpl10mitochondrial ribosomal protein L10108202603182034451Rat
1309141Osbpl7oxysterol binding protein-like 7108203599582053566Rat
1308264Tbx21T-box transcription factor 21108208232282098831Rat
631328Tbkbp1TBK1 binding protein 1108212055882135749Rat
2909Kpnb1karyopherin subunit beta 1108214566282174437Rat
619962Npeppsaminopeptidase puromycin sensitive108219145482273967Rat
1304913Mrpl45mitochondrial ribosomal protein L45108230865082320474Rat
1560033Gpr179G protein-coupled receptor 179108232456882340448Rat
11433460LOC108352126dual specificity protein phosphatase 26 pseudogene108234532582347303Rat
1307720Socs7suppressor of cytokine signaling 7108235215982388829Rat
7539176LOC102557607pulmonary surfactant-associated protein D-like108242847582437575Rat
1309742Arhgap23Rho GTPase activating protein 23108243757882496846Rat
708439Srcin1SRC kinase signaling inhibitor 1108251110182568706Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10662D10Wox23108097644580976703Ratregion
10980D10Wox16127108051612580516250Ratregion
10981D10Arb21190108051614780516346Ratregion
10982D10Mit13166108051613480516299Ratregion
34274D10Mgh5227108256485682565079Ratregion
34718D10Mgh23231107889965578899805Ratregion
34718D10Mgh23231107889965578899894Ratregion
36073D10Rat22174108065573780655922Ratregion
36131D10Rat269145107555456175554705Ratregion
36203D10Rat27145107345299273453136Ratregion
36364D10Mit20247108129073481290981Ratregion
37460D10Rat93217107821039978210622Ratregion
37502D10Rat70127106674930266749441Ratregion
35503D10Rat20123108067600080676123Ratregion
35513D10Rat24168107563188775632053Ratregion
35563D10Rat21133107981378979813922Ratregion
36878D10Rat219137107830688078307017Ratregion
36916D10Rat58170106778500967785171Ratregion
37084D10Rat28244106672620766726496Ratregion
37622D10Rat131202107373413573734359Ratregion
37894D10Rat114156107895264378952799Ratregion
37900D10Rat124205108170978881709989Ratregion
36751D10Rat25140107307464873074767Ratregion
34900D10Rat57125107098262870982751Ratregion
39800D10Rat150202107839038778390589Ratregion
39908D10Rat194242107221929472219541Ratregion
38286D10Rat112213107411896174119158Ratregion
38314D10Rat128182108118946381189735Ratregion
38314D10Rat128182108118955381189735Ratregion
38342D10Rat92180107458584674586024Ratregion
38372D10Rat152201107174710171747314Ratregion
40444D10Rat220128106888626368886389Ratregion
38504D10Rat90249106939936369399614Ratregion
38516D10Rat106235108171463081714865Ratregion
39976D10Rat151209107481482074815039Ratregion
40038D10Rat147125107958411979584264Ratregion
38936D10Rat98235106694158666941813Ratregion
39114D10Rat87201107255221772552416Ratregion
39166D10Rat107110107917290779173029Ratregion
39226D10Rat86149107877551678775681Ratregion
39500D10Rat193228107357954173579767Ratregion
39538D10Rat191215108175463781754852Ratregion
41939D10Arb27125106592723365927370Ratregion
41170D10Rat146249108007639080076653Ratregion
41298D10Rat153136107310325973103421Ratregion
41328D10Rat148153108095664180956774Ratregion
41330D10Rat154129107281522372815362Ratregion
41468D10Rat155174106697895566979128Ratregion
42922D10Rat240131106623817666238315Ratregion
42926D10Rat210160106682418566824357Ratregion
40952D10Rat144142108253879082538938Ratregion
44758D10Got84125106674876866748890Ratregion
44760D10Got87161106776554667765709Ratregion
44761D10Got88170106838312968383299Ratregion
44762D10Got97221106853163468531823Ratregion
44762D10Got97221106855027868550501Ratregion
44764D10Got90212106928093969281151Ratregion
44765D10Got89123107032555970325682Ratregion
44767D10Got93126106942485269424978Ratregion
43612D3Got12221107843056678430787Ratregion
44768D10Got95182107112789071128073Ratregion
44769D10Got94193106996569769965890Ratregion
44770D10Got100187107192754471927731Ratregion
44771D10Got99121107296409572964216Ratregion
44772D10Got162139107090256070902699Ratregion
44773D10Wox5153107172764071728178Ratregion
44773D10Wox5153107172802471728178Ratregion
44775D10Got101211107467640974676620Ratregion
44776D10Got92148107437208474372232Ratregion
44778D10Got103248107539047475390722Ratregion
44779D10Got10798107512111775121215Ratregion
44781D10Got112125107624608576246212Ratregion
44782D10Got102116107581287375812988Ratregion
44783D10Got105227107857959778579824Ratregion
44784D10Got108171107908615679086329Ratregion
44785D10Got106122107838392478384046Ratregion
44787D10Got109198107924695279247150Ratregion
44790D10Got111260108030554780305807Ratregion
44792D10Got115225108068111980681344Ratregion
44794D10Got114204108146083181461035Ratregion
44795D10Got113219108097643980976660Ratregion
44797D10Got116154108067597180676125Ratregion
44798D10Got120169108212949482129663Ratregion
44799D10Got119202108191835181918574Ratregion
625805D10Got98185107331539373315578Ratregion
625836D10Got161219106883506368835282Ratregion
629588D10Hmgc1189108051612480516311Ratregion
62436D10Uia4186106857136068571542Ratregion
66377D7Uia4202106873180368732645Ratregion
66395D10Mco30294107388714873887455Ratregion
66396D10Mco31255108053697480537228Ratregion
66397D10Mco32191108256305882563249Ratregion
66399D10Mco35390108205789882058275Ratregion
66400D10Mco36337108205377782054118Ratregion
66401D10Mco37204108205572182055925Ratregion
66404D10Mco41307108205724482057515Ratregion
66412D10Mco43130106819387068193987Ratregion
66493D10Mco63250106967491969675123Ratregion
66495D10Mco64190107292061872920810Ratregion
66499D10Mco66204107846298478463164Ratregion
704348D10Wox51191106801182768012018Ratregion
66552D10Mco1187106674365566743848Ratregion
66583D10Mco30*257107388721373887482Ratregion
67339D10Arb31108051602180516335Ratregion
1578813D10Chm203225107292996772930192Ratregion
1578816D10Chm39162107296009572960262Ratregion
1578817D10Chm112177107507480175074978Ratregion
1578820D10Chm117270107764676577647037Ratregion
1578825D10Chm6194107250882572509024Ratregion
1578826D10Chm192224106812744768127614Ratregion
1578826D10Chm192224106812744768127673Ratregion
1578832D10Chm42185107245620872456373Ratregion
1578834D10Chm255246106792999767930239Ratregion
1578837D10Chm138247107019341170193658Ratregion
1578838D10Chm177191106792613867926329Ratregion
1578839D10Chm79222107111521771115441Ratregion
1578841D10Chm73238107240197972402216Ratregion
1578843D10Chm243249107259009072590339Ratregion
1578844D10Chm222222107297609272976291Ratregion
1578847D10Chm131164106730023567300399Ratregion
1578854D10Chm104184107473665174736835Ratregion
1578857D10Chm150219106832055668320777Ratregion
1578858D10Chm123205107255225972552464Ratregion
1578859D10Chm194243107257046172570704Ratregion
1578861D10Chm202286107285761572857903Ratregion
1578862D10Chm149230106830122968301459Ratregion
1578863D10Chm111243107528932275289559Ratregion
1578866D10Chm259227107183175671831983Ratregion
1578867D10Chm198249107268792572688174Ratregion
1630856D10Got246299107730248177302780Ratregion
1631382D10Got241126106853167568531801Ratregion
1631382D10Got241126106855031968550479Ratregion
1631382D10Got241126106855039068550479Ratregion
1578870D10Chm176225106789207167892300Ratregion
1578871D10Chm141247107069004970690296Ratregion
1578872D10Chm127220106619553466195752Ratregion
1578875D10Chm187243106810989868110141Ratregion
1578886D10Chm146220106812884868129068Ratregion
1578891D10Chm29156107260631272606468Ratregion
1578898D10Chm76247107308381573084062Ratregion
1578899D10Chm228239106619940566199644Ratregion
1578900D10Chm166237106705855267058789Ratregion
1578901D10Chm214221107139761571397836Ratregion
1578903D10Chm184240106832812368328363Ratregion
1578904D10Chm133208106777683867777046Ratregion
1578907D10Chm129225106719003067190253Ratregion
1578909D10Chm204242107293244172932683Ratregion
1578910D10Chm122196106883209968832295Ratregion
1578911D10Chm178239106793957867939817Ratregion
1578912D10Chm108235107507474375074978Ratregion
1578918D10Chm167247106733546567335710Ratregion
1578922D10Chm211386107106356271063948Ratregion
1578924D10Chm77240107312200273122242Ratregion
1578926D10Chm101245107498657474986819Ratregion
1578927D10Chm189173106811683468117007Ratregion
1578930D10Chm191191106812704668127237Ratregion
1578931D10Chm171232106775004967750281Ratregion
1578934D10Chm41107107293072372930830Ratregion
1578938D10Chm92232107525918875259416Ratregion
1578939D10Chm69216107118921771189433Ratregion
1578942D10Chm5234107203097072031209Ratregion
1578946D10Chm215213107299637972996592Ratregion
1578948D10Chm132165106778071567780880Ratregion
1578951D10Chm70216107143130771431523Ratregion
1578952D10Chm103250107513389675134148Ratregion
1578953D10Chm188239106811334968113592Ratregion
1578954D10Chm137246106983885669839102Ratregion
1578956D10Chm181222106805904768059269Ratregion
1578956D10Chm181222106806484668065076Ratregion
1578957D10Chm110226107525078975251017Ratregion
1578961D10Chm221257107294991972950174Ratregion
1578963D10Chm145219106805904768059258Ratregion
1578963D10Chm145219106806484668065065Ratregion
1578964D10Chm197231107267461072674843Ratregion
1578965D10Chm80241107142568371425926Ratregion
1578973D10Chm205221107300003673000257Ratregion
1578976D10Chm218238107288882172889061Ratregion
1578979D10Chm98219107484085874841077Ratregion
1578985D10Chm175228106787089867871128Ratregion
1578987D10Chm229233106631944766319679Ratregion
1578990D10Chm225228107127886171279089Ratregion
1578992D10Chm170224106772021967720443Ratregion
1578994D10Chm147226106816456068164786Ratregion
1578995D10Chm208234107135456571354799Ratregion
1578996D10Chm199248107269664072696888Ratregion
1578998D10Chm251201106789209567892300Ratregion
1579001D10Chm102183107508277875082963Ratregion
1579003D10Chm68249107203096072031209Ratregion
1579004D10Chm35238107259745772597695Ratregion
1579005D10Chm97194107481378074813976Ratregion
1579006D10Chm71255107192283171923056Ratregion
1579013D10Chm220220107292331572923535Ratregion
1579015D10Chm128172106723239867232568Ratregion
1579016D10Chm190245106812381268124057Ratregion
1579020D10Chm257278106808367868083956Ratregion
1579022D10Chm15205107298486772985068Ratregion
1579024D10Chm168230106734292967343161Ratregion
1579027D10Chm209207107133650271336709Ratregion
1579028D10Chm119235107669796776698202Ratregion
1579034D10Chm78238107315758873157825Ratregion
1579037D10Chm93249107527648775276736Ratregion
1579039D10Chm169228106740031667400546Ratregion
1579040D10Chm107250107478513774785387Ratregion
1579042D10Chm185227106844169068441917Ratregion
1579047D10Chm152313106845553468455847Ratregion
1579048D10Chm9295107257381772574112Ratregion
1579049D10Chm74245107270718272707427Ratregion
1579050D10Chm174239106782778667828025Ratregion
1579051D10Chm130245106729321667293461Ratregion
1579052D10Chm195242107258998972590231Ratregion
1579054D10Chm40172107293007272930243Ratregion
1579056D10Chm244178106799729467997472Ratregion
1579058D10Chm114159107510283075102989Ratregion
1579060D10Chm52200108128653081286765Ratregion
1579062D10Chm136215106985157669851791Ratregion
1579071D10Chm34181107249558672495766Ratregion
1579072D10Chm121246106808236868082614Ratregion
1579074D10Chm99234107488118374881419Ratregion
1579075D10Chm144216106805904568059261Ratregion
1579075D10Chm144216106806484468065068Ratregion
1579077D10Chm179249106799336967993618Ratregion
1579078D10Chm106211107477293874773149Ratregion
1579079D10Chm210202107321443073214632Ratregion
1579081D10Chm217238107308219773082435Ratregion
1579083D10Chm246212106797932067979536Ratregion
1579084D10Chm216200107307338773073589Ratregion
1579088D10Chm135238106957293169573169Ratregion
1579091D10Chm219217107290290972903126Ratregion
1579098D10Chm96250107475628574756535Ratregion
1579104D10Chm252201106792613867926339Ratregion
1579107D10Chm7194107250608972506294Ratregion
1579113D10Chm242250107221240772212657Ratregion
1579117D10Chm113246107509467675094922Ratregion
1579118D10Chm16268107246918372469453Ratregion
1579119D10Chm75173107295679072956963Ratregion
1579121D10Chm139245107025342470253671Ratregion
1579126D10Chm148242106821189668212138Ratregion
1579128D10Chm118205107714504877145255Ratregion
1579129D10Chm126227106617830066178527Ratregion
1579132D10Chm143219107804156678041799Ratregion
1579135D10Chm196215107263698372637198Ratregion
1579140D10Chm256192106793965867939850Ratregion
1579143D10Chm258245107175229271752537Ratregion
1579144D10Chm17321107279568872796009Ratregion
1579144D10Chm17321107279568872796037Ratregion
1579148D10Chm183190106808367868083867Ratregion
1579152D10Chm95250107516361875163868Ratregion
1579153D10Chm105215107475877274758987Ratregion
1579156D10Chm151197106842769768427896Ratregion
1579159D10Chm36201107299998973000190Ratregion
1579161D10Chm173203106783075767830960Ratregion
1579163D10Chm120245106816666868166913Ratregion
1579166D10Chm3190107196656171966743Ratregion
1579169D10Chm172249106781590867816083Ratregion
1579180D10Chm245247106812709268127339Ratregion
1579182D10Chm186182106767229167672471Ratregion
1579185D10Chm201174107277703472777208Ratregion
1579186D10Chm213221107112084571121066Ratregion
1579187D10Chm53230108129073281290981Ratregion
1579188D10Chm180190106802303168023221Ratregion
1579191D10Chm227175106598362465983799Ratregion
1579192D10Chm223246107298387872984126Ratregion
1579193D10Chm165194106700019867000394Ratregion
1627430Pdk2261107997280779973068Ratregion
1629325D10Got226158107093501870935169Ratregion
1639543D10Got408163107611837876118541Ratregion
1641025D10Got215147107687498976875136Ratregion
1642081D10Mco89170106928235069282520Ratregion
1642083D10Mco88218106823013468230352Ratregion
1642085D10Mco86276106799337067993646Ratregion
1642087D10Mco84165106750210867502273Ratregion
1642089D10Mco87297106811338168113682Ratregion
1642091D10Mco85345106759592667596271Ratregion
1639949D10Got410184106863112368631309Ratregion
1636096D10Got239162106969441869694580Ratregion
1637393D10Got230187107372359873723784Ratregion
1637522D10Got225146107592578475925930Ratregion
1633965D8Got332218107192446471924682Ratregion
1634020D10Got238142107146470271464844Ratregion
1634227D10Wox53165107936154379361708Ratregion
2308866D10Kini1178106702283267023010Ratregion
7206390Tcf2193106874655268746745Ratregion
7193101AA925269208107907746479077672Ratregion
7191234Ap2b1331106820261268202943Ratregion
7206324Hoxb1378108116074081160818Ratregion
7206326Hoxb275108131807581318150Ratregion
7206328Hoxb376108131064081310716Ratregion
7206330Hoxb4124108128478681284910Ratregion
7206332Hoxb5826108127000081270826Ratregion
7206334Hoxb695108126506081265155Ratregion
7206336Hoxb770108125266781252737Ratregion
7206340Hoxb8141108124890481249045Ratregion
7206342Hoxb9176108123731281237488Ratregion
5035953PMC316831P1212107412988074130092Ratregion
5035983PMC34669P1660107989819079898850Ratregion
5038764RH127319180106820481868204998Ratregion
5036101Cbx1176108178546181785638Ratregion
5036145D11Bhm13693106679308166793174Ratregion
5036320Gngt2204108078352280784077Ratregion
5036348Hoxb11337108133203681333373Ratregion
5039180RH127558190107133149071331680Ratregion
5039260RH127604204106970270069702904Ratregion
5039260RH127604204106970270069702904Ratregion
5036480Rnu1a1231107224591572246146Ratregion
5036486Scya274106700593967006013Ratregion
5039146RH127539218107530203875302256Ratregion
5036899AU049558292106669077466691066Ratregion
5037175RH98919129107254416372544868Ratregion
5031338PMC145384P1658106700627067006928Ratregion
5031366PMC151926P1333107989913579899468Ratregion
5033929RH140651207107904488179045500Ratregion
5033933RH140667194107958649679586690Ratregion
5026132RH131035212106977612469776336Ratregion
5026240RH131452211107515437075154581Ratregion
5026250RH131489209106969835569698564Ratregion
5028865RH142624108107136383671363944Ratregion
5028877RH142665215108125169681251911Ratregion
5034243RH141905213107362108073621293Ratregion
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5499631MARC_4325-4326:991938466:1123107254416272544861Ratregion
5499559Epx890107266759572668485Ratregion
5500949MARC_9787-9788:996688611:1156108041697280417655Ratregion
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5501784MARC_12219-12220:1004719985:1419107284200572842424Ratregion
5502084MARC_3929-3930:996679185:11066106773352567734591Ratregion
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5502182MARC_7915-7916:996688163:1166107997350079974187Ratregion
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5503571THRAP1__5254552107109044671090998Ratregion
5503636UniSTS:46541199106874092868741027Ratregion
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5504434PMC20354P1597108008600680086603Ratregion
5504791UniSTS:2741841463108180281981804282Ratregion
5501369STS-H47054129108214755282148946Ratregion
5501490D17S1255110106913030669130416Ratregion
5501634Zfp403264106971203869713398Ratregion
5501880MARC_16741-16742:1020435796:1690107946199379462683Ratregion
5506187UniSTS:498743790108091239080913180Ratregion
5501898MARC_17091-17092:1023824100:1143107257986472580616Ratregion
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5502851Car10724107855521878555942Ratregion
Position Markers

Flank 1: (D10Arb27)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21065,927,233 - 65,927,370 (+)MAPPER
Rnor_6.01068,305,037 - 68,305,173NCBI
Rnor_5.01067,971,352 - 67,971,488UniSTS
RGSC_v3.41069,160,380 - 69,160,517RGD
RGSC_v3.41069,160,381 - 69,160,517UniSTS
RGSC_v3.11069,174,003 - 69,174,140RGD
Celera1064,883,710 - 64,883,846UniSTS
SHRSP x BN Map1047.6099UniSTS
SHRSP x BN Map1047.6099RGD
FHH x ACI Map1053.73RGD
Cytogenetic Map10q26UniSTS
Peak: (D10Rat153)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,103,259 - 73,103,421 (+)MAPPER
Rnor_6.01075,633,183 - 75,633,344NCBI
Rnor_5.01074,475,431 - 74,475,592UniSTS
RGSC_v3.41076,728,729 - 76,728,891RGD
RGSC_v3.41076,728,730 - 76,728,891UniSTS
RGSC_v3.11076,743,099 - 76,743,261RGD
Celera1072,011,103 - 72,011,264UniSTS
RH 2.0 Map10755.0RGD
SHRSP x BN Map1051.07RGD
Flank 2: (D10Mgh5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21082,564,856 - 82,565,079 (+)MAPPER
Rnor_6.01085,513,822 - 85,514,044NCBI
Rnor_5.01085,302,342 - 85,302,564UniSTS
RGSC_v3.41086,316,831 - 86,317,054RGD
RGSC_v3.41086,316,832 - 86,317,054UniSTS
RGSC_v3.11086,331,202 - 86,331,424RGD
Celera1081,321,296 - 81,321,518UniSTS
RH 3.4 Map10793.19UniSTS
RH 3.4 Map10793.19RGD
RH 2.0 Map10954.1RGD
Cytogenetic Map10q31UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105379738566979128Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
1331839Eae18bExperimental allergic encephalomyelitis QTL 18b5.80.03nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)106124830367785171Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
631526Bp76Blood pressure QTL 760.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106134541366743655Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106592723382565079Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)106631944767750281Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)106631944767750281Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)106631944767750281Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)106631944767750281Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)106631944767750281Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)106631944768164786Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)106631944768164786Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)106631944768164786Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)106631944768164786Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
631565Hcuc4Hepatic copper content QTL 44.15liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)106694181373452992Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)106697895567750281Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
1579917Bp282Blood pressure QTL 2820.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106740031668164786Rat
2289985Bp305Blood pressure QTL 305arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106750210873579767Rat
2292440Bp312Blood pressure QTL 312arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106775004968164786Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642290Bp299Blood pressure QTL 299arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106823013469282520Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
10450500Bp385Blood pressure QTL 3850.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107111521771966743Rat
2292439Bp309Blood pressure QTL 309arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107111521771966743Rat
12903245Cm110Cardiac mass QTL 1100.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)107111521772606468Rat
12903246Cm111Cardiac mass QTL 1110.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)107111521772606468Rat
12903247Cm112Cardiac mass QTL 1120.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107111521772606468Rat
12903248Am14Aortic mass QTL 140.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)107111521772606468Rat
12903249Kidm68Kidney mass QTL 680.02kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)107111521772606468Rat
12902615Bw185Body weight QTL 1850.01body mass (VT:0001259)body weight (CMO:0000012)107111521772606468Rat
1579918Bp279Blood pressure QTL 2790.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107111521772606468Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
2289982Bp303Blood pressure QTL 303arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)107345299275632053Rat
724555Bp150Blood pressure QTL 1500.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107345299278210622Rat
12880053Cm104Cardiac mass QTL 1040.009heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107345299283463334Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2289983Bp304Blood pressure QTL 304arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)107357954174119158Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)107437208484007272Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
2325836Bp346Blood pressure QTL 3460.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608584007272Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
724516Uae17Urinary albumin excretion QTL 173.6urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)107821062285220348Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)107981378985160854Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 1287 2296064
qtl_general inducing agent: 30 micrograms of peptide R16, major uveitogenic epitope of bovine IRBP 2296064
qtl_general allele: decreased susceptibility observed in animals homozygous for F allele and animals homozygous for L allele showed increased susceptibility 2296064
qtl_general allele: LEW allele was responsible for higher incidence of disease 2296064
qtl_general measurement method: after 16-18 days of immunization, eyes were collected and evaluated histopathologically by scoring 0-4, average score of both the eyes taken 2296064