Bss23 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bss23 (Bone structure and strength QTL 23) Rattus norvegicus

Symbol: Bss23
Name: Bone structure and strength QTL 23
RGD ID: 2293709
Trait: femur morphology trait   (VT:0000559)    
Measurement Type: femur cross-sectional area   (CMO:0001661)    
LOD Score: 5.18
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.261 - 42,487,980RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.061 - 43,665,660RGD_MAPPER_PIPELINERnor6.0
Rnor_5.068,559,248 - 53,559,248RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.461 - 42,401,411RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic loci affecting bone structure and strength in inbred COP and DA rats. Sun Q, etal., Bone. 2008 Mar;42(3):547-53. Epub 2007 Nov 28.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1585856Ralbp1l2ralA binding protein 1 like 2638788192192Rat
41317278Txnl4al2thioredoxin-like 4A like 26111150111805Rat
7685759Naa11-ps2N(alpha)-acetyltransferase 11, NatA catalytic subunit, pseudogene 26111437112376Rat
11409802LOC108350029uncharacterized LOC1083500296118567177281Rat
1310083Cwf19l2CWF19 like cell cycle control factor 26290148356636Rat
41248162Tmem126a-ps4transmembrane protein 126A, pseudogene 46310136310857Rat
1304687Alkbh8alkB homolog 8, tRNA methyltransferase6378779449382Rat
7740587Pank3-ps2pantothenate kinase 3, pseudogene 26402201406363Rat
1304582Mtm1myotubularin 16488923506882Rat
7723359LOC102553826uncharacterized LOC1025538266507112528358Rat
1596478Rrs1-ps15ribosome biogenesis regulator 1 homolog, pseudogene 156540847548560Rat
2319303Egln1-ps6egl-9 family hypoxia-inducible factor 1, pseudogene 66556312561717Rat
1597710Car13l1carbonic anhydrase 13 like 16615673623476Rat
1564275Znhit1-ps1zinc finger, HIT-type containing 1, pseudogene 16887012887449Rat
7242712Crnkl1-ps1crooked neck pre-mRNA splicing factor 1, pseudogene 1611406151142929Rat
41289894LOC120093494small nucleolar RNA U3612524181252490Rat
1560460Ppp1cb-ps7protein phosphatase 1 catalytic subunit beta, pseudogene 7613918881394865Rat
1309234Uap1l2UDP-N-acteylglucosamine pyrophosphorylase 1-like 2617143201741396Rat
6502562Wac-ps1WW domain containing adaptor with coiled-coil, pseudogene 1620002782003353Rat
2321089LOC100360971hypothetical LOC100360971620200262110273Rat
1598336Gys1-ps1glycogen synthase 1, pseudogene 1629138882915998Rat
41244779LOC120103454uncharacterized LOC120103454631221663164292Rat
628659Nrxn1neurexin 1631777884323848Rat
41065222LOC120093189uncharacterized LOC120093189633938643427483Rat
41085448Ap2m1-ps2adaptor related protein complex 2 subunit mu 1, pseudogene 2635250493539614Rat
40944671LOC120093188uncharacterized LOC120093188637287463739049Rat
40999787LOC120093187uncharacterized LOC120093187638245533835155Rat
40972029LOC12009318660S ribosomal protein L10a-like639335853942489Rat
1598337Ptbp1-ps4polypyrimidine tract binding protein 1, pseudogene 4643711134372603Rat
41112646Envl-ps18MLV-related proviral Env polyprotein-like, pseudogene 18643856494387545Rat
11480265LOC108351174uncharacterized LOC108351174648679204897060Rat
2632Fshrfollicle stimulating hormone receptor651988255406785Rat
7695048LOC102549991uncharacterized LOC102549991654858265487213Rat
3007Lhcgrluteinizing hormone/choriogonadotropin receptor656618715728109Rat
1308625Gtf2a1lgeneral transcription factor 2A subunit 1 like657528145834797Rat
41108217LOC120103455uncharacterized LOC120103455658086065869766Rat
727878Ston1stonin 1658431865892557Rat
41304927Ube2s-ps2ubiquitin-conjugating enzyme E2S, pseudogene 2658829885884287Rat
1565310Ppp1r21protein phosphatase 1, regulatory subunit 21659015185970684Rat
7584786LOC102546644uncharacterized LOC102546644660015366012391Rat
1562291Foxn2forkhead box N2660186536065226Rat
11412449LOC108351324nuclear cap-binding protein subunit 2 pseudogene661430276146570Rat
41259853LOC120103456uncharacterized LOC120103456661830656195327Rat
1562306H2az1-ps2H2A.Z variant histone 1, pseudogene 2663629736363359Rat
41009777LOC120103457uncharacterized LOC120103457663870726392670Rat
41130543LOC120103458uncharacterized LOC120103458663936926397003Rat
727935Fbxo11F-box protein 11664867616562664Rat
41013989Ndufb1-ps3NADH:ubiquinone oxidoreductase subunit B1, pseudogene 3664996916500020Rat
2322311Msh6mutS homolog 6665626316579995Rat
68940Kcnk12potassium two pore domain channel subfamily K member 12667401476790664Rat
41092315LOC120103460uncharacterized LOC120103460667877276788596Rat
620786Msh2mutS homolog 2668137936872960Rat
621365Epcamepithelial cell adhesion molecule668801426896103Rat
41376381LOC120103461uncharacterized LOC120103461669315796939747Rat
40945724Rps15a-ps4ribosomal protein S15a, pseudogene 4669800346980728Rat
41096318LOC120103462uncharacterized LOC120103462669892077002165Rat
40978669LOC120103464uncharacterized LOC120103464670066217015159Rat
41362460LOC120103463uncharacterized LOC120103463670195397034241Rat
11443157LOC108351172uncharacterized LOC108351172670729367078802Rat
41126532LOC120093413small nucleolar RNA SNORD113/SNORD114 family670824167082482Rat
41002896LOC120093446small nucleolar RNA SNORA17670843127084445Rat
2258Calm2calmodulin 2670916247104284Rat
1591638Stpg4sperm-tail PG-rich repeat containing 4671088277158519Rat
1306211Ttc7atetratricopeptide repeat domain 7A671592857261826Rat
4888601Mir3558microRNA 3558671817517181864Rat
41053189LOC120103465uncharacterized LOC120103465672145927222511Rat
628690Mcfd2multiple coagulation factor deficiency 2, ER cargo receptor complex subunit672744697285841Rat
41205604LOC120103467uncharacterized LOC120103467674140827418998Rat
1564914Socs5suppressor of cytokine signaling 5674810397512644Rat
2325125Kpna2l1karyopherin subunit alpha 2 like 1675391657541177Rat
621545CriptCXXC repeat containing interactor of PDZ3 domain675814287589384Rat
1584658Pigfphosphatidylinositol glycan anchor biosynthesis, class F675895847617719Rat
621626Rhoqras homolog family member Q676136327652047Rat
1311680Atp6v1e2ATPase H+ transporting V1 subunit E2676673597673711Rat
1588160Tmem247transmembrane protein 247676965177701464Rat
2324313LOC100362645Egam-1N-like677519447755356Rat
68404Epas1endothelial PAS domain protein 1677902367871717Rat
41305804Eif3h-ps1eukaryotic translation initiation factor 3, subunit H, pseudogene 1679393607940434Rat
61925Prkceprotein kinase C, epsilon679650488451966Rat
1562146Prkcel1protein kinase C, epsilon like 1681767638181995Rat
7702239Pgam1-ps7phosphoglycerate mutase 1, pseudogene 7683156798319172Rat
41212443LOC120093190uncharacterized LOC120093190684523228461174Rat
7502774LOC102551445uncharacterized LOC102551445684651758473251Rat
1562788Srbd1S1 RNA binding domain 1684735918664544Rat
7522754LOC102551210uncharacterized LOC102551210687060148734589Rat
41091305LOC120103470uncharacterized LOC120103470688310278850178Rat
7534844LOC102551142uncharacterized LOC102551142689733988974582Rat
1310792Six2SIX homeobox 2689748598981345Rat
620909Six3SIX homeobox 3690390179043336Rat
11423888LOC108351167uncharacterized LOC108351167690456109061487Rat
41070373LOC120103471uncharacterized LOC120103471690838699109478Rat
1583783Slc25a3-ps2solute carrier family 25 member 3, pseudogene 2691535169155654Rat
1310453Camkmtcalmodulin-lysine N-methyltransferase691989459580200Rat
41018048LOC120093505U6 spliceosomal RNA693449909345096Rat
41148650LOC120093312U6 spliceosomal RNA695747829574888Rat
1310143Preplprolyl endopeptidase-like695803679609957Rat
3709Slc3a1solute carrier family 3 member 1696081699641881Rat
3374Ppm1bprotein phosphatase, Mg2+/Mn2+ dependent, 1B696466959707471Rat
6496793LOC100910809uncharacterized LOC100910809697717479789422Rat
1306575Lrpprcleucine-rich pentatricopeptide repeat containing698598169942294Rat
11496786Rpl26-ps12ribosomal protein L26, pseudogene 12699204349921084Rat
620300Abcg8ATP binding cassette subfamily G member 8699456299964912Rat
620298Abcg5ATP binding cassette subfamily G member 5699651189990563Rat
1310286Dync2li1dynein cytoplasmic 2 light intermediate chain 16999253710025355Rat
41028128LOC120093294U6 spliceosomal RNA61002706810027172Rat
1304935Plekhh2pleckstrin homology, MyTH4 and FERM domain containing H261003283710132081Rat
1560519ThadaTHADA, armadillo repeat containing61018394210488007Rat
1308913Zfp36l2zinc finger protein 36, C3H type-like 261049003210494073Rat
11488608LOC108351166uncharacterized LOC10835116661052667810530961Rat
7609114Sypl1-ps2synaptophysin-like 1, pseudogene 261054549710548918Rat
41317467LOC120093193uncharacterized LOC12009319361061074610635328Rat
7612440LOC102548368uncharacterized LOC10254836861075002610768661Rat
7556929LOC102548459wiskott-Aldrich syndrome protein family member 1-like61082928010831419Rat
11501632Trnai-uau2transfer RNA isoleucine (anticodon UAU) 261083035410830446Rat
41013930LOC120093196uncharacterized LOC12009319661084041310846118Rat
71071Haao3-hydroxyanthranilate 3,4-dioxygenase61084523510864863Rat
1306803Mta3metastasis associated 1 family, member 361086702810987221Rat
628832Kcng3potassium voltage-gated channel modifier subfamily G member 361105131111099264Rat
41017011LOC120093197uncharacterized LOC12009319761117154911174023Rat
1306111Cox7a2lcytochrome c oxidase subunit 7A2 like61118406411198287Rat
1304690Eml4EMAP like 461121954511334824Rat
41086840Tpt1-ps10tumor protein, translationally-controlled 1 pseudogene 1061127659911281855Rat
7670283LOC102556624uncharacterized LOC10255662461137269211391056Rat
1584001H3f3a-ps3H3.3 histone A, pseudogene 361142150211422456Rat
1311939Pkdccprotein kinase domain containing, cytoplasmic61145568611465002Rat
40976299LOC120103472uncharacterized LOC12010347261150009711506294Rat
41369146LOC120103473uncharacterized LOC12010347361154293711571649Rat
6500550LOC100910081uncharacterized LOC10091008161159164611595180Rat
41061512LOC120093297U6 spliceosomal RNA61167129611671408Rat
1597030Psme3-ps3proteasome activator subunit 3, pseudogene 361171370711714533Rat
9236593LOC103692540phosphomannomutase 1 pseudogene61172600911726743Rat
7641948LOC102552412uncharacterized LOC10255241261208624212306215Rat
11472968Trnan-guu7transfer RNA asparagine (anticodon GUU) 761211289212112965Rat
41084834LOC120093453small nucleolar RNA SNORA1761259463112594762Rat
41343787LOC120103474uncharacterized LOC12010347461264155012651167Rat
6501902Set-ps7Set nuclear proto-oncogene, pseudogene 761290888912920762Rat
41135465LOC120103475uncharacterized LOC12010347561304145813055736Rat
3717Slc8a1solute carrier family 8 member A161319460913547369Rat
41176911LOC120093498U4 spliceosomal RNA61320151713201659Rat
1306878Thumpd2THUMP domain containing 261392474213976657Rat
1303057Tmem178atransmembrane protein 178A61400462914063677Rat
11506404LOC108351161uncharacterized LOC10835116161408466814150295Rat
41271659LOC120103476uncharacterized LOC12010347661411879214128563Rat
7726994LOC102551891uncharacterized LOC10255189161419089814203284Rat
621280Map4k3mitogen-activated protein kinase kinase kinase kinase 361427662314446321Rat
7610953LOC102551744eukaryotic translation initiation factor 1-like61434740114348136Rat
1583704Cdkl4cyclin-dependent kinase-like 461444982214492568Rat
1310949Sos1SOS Ras/Rac guanine nucleotide exchange factor 161453387014613348Rat
1560224Arhgef33Rho guanine nucleotide exchange factor 3361458292214715014Rat
1597031Eif4a2-ps2eukaryotic translation initiation factor 4A2, pseudogene 261471092714712015Rat
1563988Morn2MORN repeat containing 261471879914725281Rat
1310340Dhx57DExH-box helicase 5761472530514776321Rat
1311168Gemin6gem (nuclear organelle) associated protein 661478609014790617Rat
1311615Ttc39dtetratricopeptide repeat domain 39D61480275314811516Rat
1307425Srsf7serine and arginine rich splicing factor 761481177514818968Rat
1359459Galmgalactose mutarotase61483754014889484Rat
41194476LOC120093299U6 spliceosomal RNA61491725114917354Rat
1305861Hnrnpllheterogeneous nuclear ribonucleoprotein L-like61496995315000574Rat
41266585LOC120093309U6 spliceosomal RNA61499589114995987Rat
1305125Atl2atlastin GTPase 261513907115180421Rat
11514173LOC108351158uncharacterized LOC10835115861525788415259593Rat
7638001LOC102554703uncharacterized LOC10255470361526002815283578Rat
2460Cyp1b1cytochrome P450, family 1, subfamily b, polypeptide 161534231215350886Rat
1559836Rmdn2regulator of microtubule dynamics 261537256915443000Rat
1305858Cdc42ep3CDC42 effector protein 361571089415731366Rat
41359201LOC120093233uncharacterized LOC12009323361577979215782678Rat
9259827LOC103692532uncharacterized LOC10369253261579340315800448Rat
1585899Atp5mgl3ATP synthase membrane subunit G like 361594531515945626Rat
2324081Morf4l1-ps1mortality factor 4 like 1, pseudogene 161594752715948501Rat
1562284Qpctglutaminyl-peptide cyclotransferase61596465615996730Rat
6489794Rps17-ps9ribosomal protein S17, pseudogene 961602364216027014Rat
1310236Prkd3protein kinase D361603250716108444Rat
1311578Ndufaf7NADH:ubiquinone oxidoreductase complex assembly factor 761610863016119810Rat
1304994CebpzCCAAT/enhancer binding protein zeta61611987116137600Rat
9177508CebpzosCEBPZ opposite strand61613554616140143Rat
1585984Hnrnpf-ps4heterogeneous nuclear ribonucleoprotein F, pseudogene 461614421316146357Rat
1598187Sult6b1sulfotransferase family 6B member 161616238216187116Rat
3402Eif2ak2eukaryotic translation initiation factor 2-alpha kinase 261618900016224972Rat
41131139LOC120103477uncharacterized LOC12010347761621465816215105Rat
1311424Gpatch11G patch domain containing 1161622993316243305Rat
1359216Heatr5bHEAT repeat containing 5B61624342416323444Rat
3782Strnstriatin61633526516422159Rat
1564128Vitvitrin61644596616565644Rat
619709Fez2fasciculation and elongation protein zeta 261665457216694628Rat
40956779LOC120093475U2 spliceosomal RNA61667808216678256Rat
1308710Crim1cysteine rich transmembrane BMP regulator 161669586416870264Rat
41357253LOC120103478uncharacterized LOC12010347861681892116820617Rat
2323142Nsa2-ps2NSA2 ribosome biogenesis factor, pseudogene 261688941016892523Rat
1587169H3f3a-ps1H3.3 histone A, pseudogene 161697392316974753Rat
7711568LOC102553200uncharacterized LOC10255320061759201217596460Rat
1592088Hsp90ab1-ps3heat shock protein 90 alpha family class B member 1, pseudogene 361782661217828822Rat
41384706Ndufa12-ps1NADH:ubiquinone oxidoreductase subunit A12, pseudogene 161816135018161849Rat
11495481LOC108351326peptidyl-prolyl cis-trans isomerase D pseudogene61881549218816893Rat
41222005LOC120093295U6 spliceosomal RNA61904531919045424Rat
1583780Hspd1-ps11heat shock protein family D (Hsp60) member 1, pseudogene 1161927385119276050Rat
41200534LOC120093234uncharacterized LOC12009323461959860619614675Rat
1583779St13-ps3ST13, Hsp70 interacting protein, pseudogene 361973853019740177Rat
1583702Ldha-ps13lactate dehydrogenase A, pseudogene 1361977230219773267Rat
1305486Fam98afamily with sequence similarity 98, member A61987408219888744Rat
1304612Rasgrp3RAS guanyl releasing protein 361989536119993945Rat
7676249Rpl32-ps18ribosomal protein L32, pseudogene 1861994876019958584Rat
68379Ltbp1latent transforming growth factor beta binding protein 162002962920425339Rat
41098799LOC120103479uncharacterized LOC12010347962008854420109208Rat
11470604LOC10835135640S ribosomal protein S18 pseudogene62045050520450948Rat
41211263LOC120093429small nucleolar RNA SNORA4862053064520530788Rat
1305264Ttc27tetratricopeptide repeat domain 2762055875620702126Rat
11419109LOC108351178uncharacterized LOC10835117862061936220624156Rat
41392415LOC120093282U6 spliceosomal RNA62063098220631088Rat
1307247Birc6baculoviral IAP repeat-containing 662072292220916396Rat
1310157Yipf4Yip1 domain family, member 462095077420962195Rat
1309831Nlrc4NLR family, CARD domain containing 462099178521018254Rat
1309250Slc30a6solute carrier family 30 member 662102093121050785Rat
9086644LOC103692563uncharacterized LOC10369256362105087021070583Rat
1308494Spastspastin62105534921106586Rat
1591362Rpl18a-ps5ribosomal protein L18A, pseudogene 562110843121109299Rat
41372126LOC120103480uncharacterized LOC12010348062111770921120267Rat
708575Dpy30dpy-30 histone methyltransferase complex regulatory subunit62112094721141720Rat
1309929Memo1mediator of cell motility 162114452521234363Rat
41157183Hmgb2-ps4high mobility group box 2, pseudogene 462135447221356273Rat
1586183Pym1-ps1PYM homolog 1, exon junction complex associated factor, pseudogene 162139209421394047Rat
621480Srd5a2steroid 5 alpha-reductase 262142622521465727Rat
41120104LOC120093428small nucleolar RNA SNORA4862148057021480717Rat
2323407Sf3b4-ps1splicing factor 3B subunit 4, pseudogene 162151423021515489Rat
62043Xdhxanthine dehydrogenase62153046321592172Rat
621762Ehd3EH-domain containing 362164086121665601Rat
40933028LOC120103483uncharacterized LOC12010348362167718321701385Rat
1310068Galnt14polypeptide N-acetylgalactosaminyltransferase 1462175603921977533Rat
1562682Capn13calpain 1362207184522166864Rat
1589005Fam241b-ps1family with sequence similarity 241 member B, pseudogene 162218320122184227Rat
7531265LOC102547438uncharacterized LOC10254743862221412822219472Rat
1565906Lclat1lysocardiolipin acyltransferase 162222893322373246Rat
41195560LOC120093473small nucleolar RNA SNORA1762229186222291977Rat
6488952LOC100912066uncharacterized LOC10091206662237331622421143Rat
11440644LOC108351184uncharacterized LOC10835118462253829522551745Rat
1584525LbhLBH regulator of WNT signaling pathway62256923822593056Rat
1309657Ypel5yippee-like 562265628422671741Rat
9094701LOC103692567uncharacterized LOC10369256762278448722840562Rat
628622AlkALK receptor tyrosine kinase62287965323599636Rat
11422410LOC108351183uncharacterized LOC10835118362289723523002084Rat
1359510Sfnl1stratifin like 162296515122966436Rat
11394189LOC108351180uncharacterized LOC10835118062338229823394542Rat
1311049Clip4CAP-GLY domain containing linker protein family, member 462359772923601000Rat
1311049Clip4CAP-GLY domain containing linker protein family, member 462361628023697625Rat
1311049Clip4CAP-GLY domain containing linker protein family, member 462371858023729231Rat
1304963Pcarephotoreceptor cilium actin regulator62374970023758424Rat
1310677Togaram2TOG array regulator of axonemal microtubules 262377097923828884Rat
1565005Wdr43WD repeat domain 4362384549923884846Rat
41351625Snord53bsmall nucleolar RNA, C/D box 53B62386066023860735Rat
40956032Snord53small nucleolar RNA, C/D box 5362386137723861454Rat
41332489Snord92small nucleolar RNA, C/D box 9262387062723870715Rat
11359993Trnac-gca30transfer RNA cysteine (anticodon GCA) 3062389874323898814Rat
621730Spdyaspeedy/RINGO cell cycle regulator family member A62390557423954926Rat
3376Ppp1cbprotein phosphatase 1 catalytic subunit beta62395881323992841Rat
621565Plb1phospholipase B162408705124227167Rat
41338793LOC120103485uncharacterized LOC12010348562409263424098070Rat
1597860Pym1-ps2PYM homolog 1, exon junction complex associated factor, pseudogene 262426322324276159Rat
2628Fosl2FOS like 2, AP-1 transcription factor subunit62429789824319219Rat
735111Babam2BRISC and BRCA1 A complex member 262436902124788416Rat
1310064Rbksribokinase62474765124824290Rat
2322809Mrpl33mitochondrial ribosomal protein L3362482580024833994Rat
7699142LOC102548914uncharacterized LOC10254891462489341324897027Rat
1307080Slc4a1apsolute carrier family 4 member 1 adaptor protein62490594124933651Rat
1562206Supt7lSPT7 like, STAGA complex subunit gamma62493394124944656Rat
1589985Gpn1GPN-loop GTPase 162494735024965025Rat
1560110Ccdc121coiled-coil domain containing 12162497084524973451Rat
1561526Zfp512zinc finger protein 51262497690325007913Rat
7513610Spata31h1SPATA31 subfamily H member 162502371825040928Rat
2671Gckrglucokinase regulator62504459225075834Rat
6496095Fndc4fibronectin type III domain containing 462507715525080812Rat
620744Ift172intraflagellar transport 17262508193325121271Rat
1596516Krtcap3keratinocyte associated protein 362512093825122522Rat
1589575Nrbp1nuclear receptor binding protein 162512263525133209Rat
628676Ppm1gprotein phosphatase, Mg2+/Mn2+ dependent, 1G62515355625173763Rat
1310456Zfp513zinc finger protein 51362517418125177442Rat
1306424Snx17sorting nexin 1762517752825183001Rat
620208Eif2b4eukaryotic translation initiation factor 2B subunit delta62518317725188832Rat
1560392Gtf3c2general transcription factor IIIC subunit 262519643925221338Rat
1310512Mpv17mitochondrial inner membrane protein MPV1762522166825236241Rat
3929Ucnurocortin62523812025238950Rat
1306453Trim54tripartite motif-containing 5462523934025258511Rat
1307426Dnajc5gDnaJ heat shock protein family (Hsp40) member C5 gamma62526008725264251Rat
1359689Slc30a3solute carrier family 30 member 362526431025284720Rat
1588606Cadcarbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase62529213325315078Rat
1311605Atraidall-trans retinoic acid-induced differentiation factor62531523625319821Rat
69648Slc5a6solute carrier family 5 member 662531918725331713Rat
1586500Tcf23transcription factor 2362539788925406639Rat
2315526Prr30proline rich 3062541506925417582Rat
61929Prebprolactin regulatory element binding62541880525422594Rat
1310988Abhd1abhydrolase domain containing 162542252625427514Rat
620801Cgref1cell growth regulator with EF hand domain 162543184625443853Rat
2966Khkketohexokinase62544529825455834Rat
1311209Emilin1elastin microfibril interfacer 162545597425463713Rat
2300150Ost4oligosaccharyltransferase complex subunit 4, non-catalytic62547125425472478Rat
1598311Agbl5AGBL carboxypeptidase 562547233325492173Rat
11476312Trnay-gua3transfer RNA tyrosine (anticodon GUA) 362549153925491627Rat
1311324Tmem214transmembrane protein 21462550157525510444Rat
1359297Mapre3microtubule-associated protein, RP/EB family, member 362551380025558876Rat
11517696LOC108351190uncharacterized LOC10835119062552514825527188Rat
11363564LOC108351187uncharacterized LOC10835118762555868925575141Rat
11489826LOC10835118660S ribosomal protein L37 pseudogene62556729625572674Rat
620467Dpysl5dihydropyrimidinase-like 562557510425659422Rat
40940627LOC120103488uncharacterized LOC12010348862559277325597636Rat
41105934LOC120093431small nucleolar RNA SNORA4862569824225698386Rat
1563607Cenpacentromere protein A62570014225711767Rat
1309228Slc35f6solute carrier family 35, member F662572582225737720Rat
61997Kcnk3potassium two pore domain channel subfamily K member 362576148725799153Rat
1584147Cib4calcium and integrin binding family member 462584260525903509Rat
1559683Cimip2cciliary microtubule inner protein 2C62590529425923615Rat
620646Otofotoferlin62592801826024631Rat
1359318Drc1dynein regulatory complex subunit 162602500426059438Rat
1560938Selenoiselenoprotein I62607312726111326Rat
41352920LOC120103489uncharacterized LOC12010348962611151226117344Rat
1305868Adgrf3adhesion G protein-coupled receptor F362613317626144601Rat
620513Hadhbhydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta62615357226187668Rat
620512Hadhahydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha62618796926227605Rat
1597138Garem2GRB2 associated regulator of MAPK1 subtype 262622896526255576Rat
40992611Rbbp4-ps4RB binding protein 4, chromatin remodeling factor, pseudogene 462624756526254076Rat
620879Rab10RAB10, member RAS oncogene family62626708126319739Rat
41285196LOC120103491uncharacterized LOC12010349162635020226357723Rat
621538Kif3ckinesin family member 3C62636709226406033Rat
41378379LOC120103492uncharacterized LOC12010349262640656226425702Rat
1304710Asxl2ASXL transcriptional regulator 262642501726514899Rat
9083598Rpusd4-ps1RNA pseudouridine synthase D4, pseudogene 162646679426470463Rat
1309579Dtnbdystrobrevin, beta62656641826763467Rat
41082100Btf3-ps5basic transcription factor 3, pseudogene 562661607626616536Rat
1303336Dnmt3aDNA methyltransferase 3 alpha62679151726902161Rat
41024468LOC120103494uncharacterized LOC12010349462683790626842773Rat
1565766Yipf4l1Yip1 domain family, member 4 like 162692360526924789Rat
3366Pomcproopiomelanocortin62693984426945666Rat
1310845Efr3bEFR3 homolog B62694743627021113Rat
41181501LOC120103495uncharacterized LOC12010349562697743626981215Rat
1564414Dnajc27DnaJ heat shock protein family (Hsp40) member C2762706871327098449Rat
41044806Cox7b-ps3cytochrome c oxidase subunit 7B, pseudogene 362709286427093103Rat
71009Adcy3adenylate cyclase 362710008927203686Rat
41355253LOC120103497general transcription factor IIH subunit 5-like62710920927114478Rat
1590328Cenpocentromere protein O62720364227218394Rat
1561792Ptrhd1peptidyl-tRNA hydrolase domain containing 162721841727221805Rat
1309046Ncoa1nuclear receptor coactivator 162723260927507992Rat
41192041Trnas-aga24transfer RNA serine (anticodon AGA) 2462736179227361866Rat
1590890Itsn2intersectin 262761664527727373Rat
41314820Rpl29-ps6ribosomal protein L29, pseudogene 662767264127673318Rat
1359275Fam228afamily with sequence similarity 228, member A62772798227750140Rat
2324744Fam228bfamily with sequence similarity 228, member B62775450527786578Rat
1359707Pfn4profilin family, member 462778661927796710Rat
41235940Tp53i3tumor protein p53 inducible protein 362781832727825753Rat
2318878Sf3b6splicing factor 3B, subunit 662782604427835086Rat
61835Fkbp1bFKBP prolyl isomerase 1B62783212827850600Rat
1563701WdcpWD repeat and coiled coil containing62785068427865540Rat
41010483LOC120093289U6 spliceosomal RNA62785483627854942Rat
1561716Mfsd2bMFSD2 lysolipid transporter B, sphingolipid62787018227883768Rat
1589027Ubxn2aUBX domain protein 2A62788436427912767Rat
1566199Atad2bATPase family, AAA domain containing 2B62791454628070103Rat
1311076Klhl29kelch-like family member 2962808648928390647Rat
41117001LOC120103500uncharacterized LOC12010350062818620528199533Rat
9118293LOC103692581uncharacterized LOC10369258162839075528432893Rat
41399269LOC120103501uncharacterized LOC12010350162840401628424608Rat
41035754LOC120103502uncharacterized LOC12010350262847496128502949Rat
41256725LOC120093235uncharacterized LOC12009323562877305628774724Rat
40962240LOC120103503uncharacterized LOC12010350362890901828932289Rat
1587970Vrk3-ps1VRK serine/threonine kinase 3, pseudogene 162925091229252250Rat
41242608LOC120103504uncharacterized LOC12010350462997897729993828Rat
41318895LOC120103506uncharacterized LOC12010350663002077530152258Rat
41142915Snupn-ps2snurportin 1, pseudogene 263004191030045502Rat
1590889Rpl13-ps8ribosomal protein L13, pseudogene 863024526430245810Rat
7630115LOC102556100uncharacterized LOC10255610063025983130279176Rat
11391888LOC108351199uncharacterized LOC10835119963038318130394782Rat
7683264LOC102556187uncharacterized LOC10255618763057492930643987Rat
7716193Tdrd15tudor domain containing 1563074195630818500Rat
2129Apobapolipoprotein B63084438630883983Rat
6500147Ccnf-ps2cyclin F, pseudogene 263089074330894066Rat
9474178LOC103692595uncharacterized LOC10369259563093947530978475Rat
1311648Ldahlipid droplet associated hydrolase63108204531166625Rat
620105Gdf7growth differentiation factor 763117149531182484Rat
1311331Hs1bp3HCLS1 binding protein 363119256831222835Rat
41376624LOC120103507uncharacterized LOC12010350763122348331237342Rat
7724923LOC102550373uncharacterized LOC10255037363123585431257835Rat
41247007LOC120103508uncharacterized LOC12010350863133071531352097Rat
621309Rhobras homolog family member B63136375231365926Rat
11426161LOC108351200uncharacterized LOC10835120063137405231393357Rat
1560726Slc7a15solute carrier family 7 (cationic amino acid transporter, y+ system), member 1563140374731415231Rat
1311024Pum2pumilio RNA-binding family member 263146287931542976Rat
3648Sdc1syndecan 163156279931585267Rat
2322698Rps21-ps6ribosomal protein S21, pseudogene 663169314731693780Rat
735179Laptm4alysosomal protein transmembrane 4 alpha63171928731737023Rat
1305085Matn3matrilin 363174851731768564Rat
40959945LOC120103509uncharacterized LOC12010350963177090431771377Rat
1564116Wdr35WD repeat domain 3563177131531831450Rat
1585566Ttc32tetratricopeptide repeat domain 3263183442831841027Rat
1588772Hnrnpa1-ps37heterogeneous nuclear ribonucleoprotein A1, pseudogene 3763187550231877647Rat
41365188LOC120103510uncharacterized LOC12010351063217672032193316Rat
1311807Osr1odd-skipped related transcription factor 163236956132380822Rat
11455275LOC108351357uncharacterized LOC10835135763250607332514115Rat
41135996LOC120103511uncharacterized LOC12010351163284009332845749Rat
1309705Nt5c1b5'-nucleotidase, cytosolic IB63313905333156489Rat
1565196Rdh14retinol dehydrogenase 1463315656933161712Rat
41370558LOC120103512uncharacterized LOC12010351263325562533325526Rat
41281285LOC120103513uncharacterized LOC12010351363344774633451185Rat
6494941Parl-ps7presenilin associated, rhomboid-like, pseudogene 763377856133782700Rat
621527Kcns3potassium voltage-gated channel, modifier subfamily S, member 363380831433865018Rat
1587516Msgn1mesogenin 163391278733913427Rat
1559792Gen1GEN1 Holliday junction 5' flap endonuclease63394759933978461Rat
7591084LOC102547959uncharacterized LOC10254795963395953233962509Rat
1311214Smc6structural maintenance of chromosomes 663397873034033201Rat
3966Vsnl1visinin-like 163403864134159479Rat
1583700Mrps10-ps1mitochondrial ribosomal protein S10, pseudogene 163417823034178737Rat
2322652Rad51ap2RAD51 associated protein 263418217734189129Rat
1586345Hspa8-ps25heat shock protein family A (Hsp70) member 8, pseudogene 2563462402634626138Rat
41331744LOC120093456small nucleolar RNA SNORA1763476947034769595Rat
1586329Hat1-ps1histone acetyltransferase 1, pseudogene 163484247134843593Rat
1586335Rpl27l8ribosomal protein L27 like 863486773334868179Rat
1305961CyriaCYFIP related Rac1 interactor A63504520835150669Rat
2322296Cox7cl1cytochrome c oxidase subunit 7C like 163532699535327273Rat
1565679Rpl27a-ps14ribosomal protein L27a, pseudogene 1463550127535501755Rat
11364133Trnav-uac3transfer RNA valine (anticodon UAC) 363558021135580283Rat
41335282LOC120093419small nucleolar RNA SNORA1563559727935597405Rat
1584995MycnMYCN proto-oncogene, bHLH transcription factor63571776435723590Rat
9410455Rps16-ps1ribosomal protein S16, pseudogene 163573100135731699Rat
619903Ddx1DEAD-box helicase 163599646936027340Rat
1585140NbasNBAS subunit of NRZ tethering complex63604835736353206Rat
11488723LOC108351202ferritin light chain 1 pseudogene63614641136147701Rat
41070163LOC120103514uncharacterized LOC12010351463621250936215589Rat
41388044LOC120103515uncharacterized LOC12010351563638231536391016Rat
1585125Morf4l1-ps9mortality factor 4 like 1, pseudogene 963658836636589355Rat
11498460LOC108351358uncharacterized LOC10835135863666987836810264Rat
1305779Lratd1LRAT domain containing 163691696936922143Rat
2319366Fbxw2-ps2F-box and WD repeat domain containing 2, pseudogene 263721253737214363Rat
7715436LOC102555226uncharacterized LOC10255522663741567537435927Rat
11498435LOC108351205uncharacterized LOC10835120563750642637610011Rat
41258020LOC120103517uncharacterized LOC12010351763761035837694325Rat
11377656LOC108351206uncharacterized LOC10835120663764487437720487Rat
1584006Eif3b-ps1eukaryotic translation initiation factor 3, subunit B, pseudogene 163785599437858259Rat
41075541Trnaa-ggc4transfer RNA alanine (anticodon GGC) 463795137037951450Rat
1583858Tdg-ps2thymine-DNA glycosylase, pseudogene 263805055838051737Rat
7515781LOC102556604uncharacterized LOC10255660463823057338279335Rat
7557098LOC102555705uncharacterized LOC10255570563832785338348255Rat
41343564LOC120103518uncharacterized LOC12010351863851558538519218Rat
1564451Trib2tribbles pseudokinase 263854597138570349Rat
7657676LOC102555864uncharacterized LOC10255586463872202838728847Rat
7500641LOC102555927uncharacterized LOC10255592763877891638822800Rat
2321713Rpl11-ps2ribosomal protein L11, pseudogene 263892067338921200Rat
40932412LOC120093236uncharacterized LOC12009323663918573239186930Rat
7501955LOC102550954uncharacterized LOC10255095463925363339290633Rat
1307646Lpin1lipin 163930919839417034Rat
70962Ntsr2neurotensin receptor 263942429739431015Rat
1564091Greb1growth regulating estrogen receptor binding 163944052239562364Rat
631412E2f6E2F transcription factor 663959222439608685Rat
3590Rock2Rho-associated coiled-coil containing protein kinase 263967911639774033Rat
1306818Slc66a3solute carrier family 66 member 363977480139786554Rat
1582838C6h2orf50similar to human chromosome 2 open reading frame 5063979241639797072Rat
631414Kcnf1potassium voltage-gated channel modifier subfamily F member 163996230139964979Rat
628688Pdia6protein disulfide isomerase family A, member 664006298040080223Rat
1359430Atp6v1c2ATPase H+ transporting V1 subunit C264008054540144199Rat
1359447Nol10nucleolar protein 1064014421740225353Rat
1561890Cfdp1l1craniofacial development protein 1 like 164025471740255884Rat
1597342Psme3-ps2proteasome activator subunit 3, pseudogene 264027018740271205Rat
3227Odc1ornithine decarboxylase 164032983140336444Rat
41218949Snora80bsmall nucleolar RNA, H/ACA box 80B64033114340331276Rat
41299246Trnav-aac13transfer RNA valine (anticodon AAC) 1364041593840416018Rat
41314300Ptma-ps3prothymosin alpha, pseudogene 364042091940423313Rat
40979901LOC12009323860S ribosomal protein L35-like64042359440425165Rat
708375Hpcal1hippocalcin-like 164047820640584721Rat
1305263Asap2ArfGAP with SH3 domain, ankyrin repeat and PH domain 264065820140821017Rat
41082662LOC120093281U6 spliceosomal RNA64072761140727717Rat
1307810Itgb1bp1integrin subunit beta 1 binding protein 164082069340836074Rat
1305767Cpsf3cleavage and polyadenylation specific factor 364083612140864129Rat
41210651LOC120093425small nucleolar RNA SNORA2164083772240837850Rat
727866Iah1isoamyl acetate hydrolyzing esterase 164086553040872747Rat
620404Adam17ADAM metallopeptidase domain 1764087293640920700Rat
41040147LOC120093315U6 spliceosomal RNA64090153440901635Rat
41197514LOC1200932755S ribosomal RNA64092292240923040Rat
3979Ywhaqtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta64093571440966240Rat
1596058Taf1bTATA-box binding protein associated factor, RNA polymerase I subunit B64111698041194593Rat
7731406Rbm34-ps1RNA binding motif protein 34, pseudogene 164115112341153682Rat
1305735Grhl1grainyhead-like transcription factor 164120732541257516Rat
1306646Klf11KLF transcription factor 1164128569941297548Rat
1596023Cys1cystin 164130083641318071Rat
1598310Rrm2ribonucleotide reductase regulatory subunit M264133985841346774Rat
41153839LOC120093240uncharacterized LOC12009324064137743241380036Rat
1305798Mboat2membrane bound O-acyltransferase domain containing 264147113541597599Rat
619949Kidins220kinase D-interacting substrate 22064161820741706990Rat
41007282LOC120093241ubiquinol-cytochrome-c reductase complex assembly factor 3-like64172531141725677Rat
2859Id2inhibitor of DNA binding 264174055641742393Rat
7526561LOC102553989uncharacterized LOC10255398964182949241855070Rat
9103871LOC103692605uncharacterized LOC10369260564190566341914487Rat
9329158Ndufa5-ps2NADH:ubiquinone oxidoreductase subunit A5, pseudogene 264193110841931448Rat
7629645LOC102554202uncharacterized LOC10255420264194571541969352Rat
7536096LOC102557053uncharacterized LOC10255705364204746342118475Rat
41346264LOC120093242uncharacterized LOC12009324264226566942283040Rat
41088761LOC120093243uncharacterized LOC12009324364240591042411124Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33828D6Mit918663330939133309549Ratregion
34138D6Mgh812563207442832074553Ratregion
11488D6Arb721763403955034039769Ratregion
33561D6Mit5175653450075345178Ratregion
36344D12Mit10121615766581576779Ratregion
37298D6Rat10521561872366018723879Ratregion
37410D6Rat10717961952217919522352Ratregion
37496D6Rat108150622993572299495Ratregion
37562D6Rat7714862266434522664497Ratregion
35235D6Rat2913063813689338137023Ratregion
35338D6Rat3116264234207842342232Ratregion
35390D6Rat3614063509870935098849Ratregion
35396D6Rat3517063443413734434305Ratregion
35411D6Rat5614461440416214404306Ratregion
35507D6Rat4317261995589919956076Ratregion
35531D6Rat3814963403951834039669Ratregion
35541D6Rat47162638929043893050Ratregion
37000D6Rat18015561749359817493753Ratregion
37046D6Rat5212163541471835414835Ratregion
37142D6Rat8024461653614016536392Ratregion
37662D6Rat9224563967147639671747Ratregion
37746D6Rat9619963855205338552278Ratregion
36534D6Rat3217264164972641649891Ratregion
36560D6Rat3415063971455039714722Ratregion
36737D6Rat4417361633650916336688Ratregion
36787D6Rat3716763569161835691785Ratregion
34843D6Rat4014161653624316536392Ratregion
35134D6Rat4121062086642220866681Ratregion
35579D6Rat5415562295900922959164Ratregion
35647D6Rat5515561511882815118983Ratregion
35653D6Rat4214561998791119988050Ratregion
35683D6Rat3913862033877720338915Ratregion
35963D6Rat46144650744975074641Ratregion
35979D6Rat5316862958440029584568Ratregion
39622D6Rat151149637570193757174Ratregion
39716D6Rat14915061089441510894565Ratregion
39848D6Rat14315863686871236868865Ratregion
39924D6Rat14120163875148238751689Ratregion
38006D6Rat6923161173566911735900Ratregion
40412D6Rat17615862791705027917198Ratregion
40604D6Rat173171697117919711961Ratregion
40624D6Rat14824662089406520894315Ratregion
38562D6Rat8924262739266627392902Ratregion
38724D6Rat8622461952513319525367Ratregion
38758D6Rat8313664025737440257518Ratregion
40004D6Rat15719962437076624370973Ratregion
40220D6Rat15617462694691626947057Ratregion
39124D6Rat6221761239404712394267Ratregion
39190D6Rat6827061510721615107485Ratregion
39342D6Rat7423962142019621420428Ratregion
39342D6Rat7423962142019621420428Ratregion
39450D6Rat13824964054393340544194Ratregion
42202D6Arb516063411286734113027Ratregion
42771D6Rat213121661193736119470Ratregion
42772D6Rat211125682756558275790Ratregion
42775D6Rat214236693111249311366Ratregion
42776D6Rat20914962091964020919815Ratregion
42777D6Rat17246562095268420953163Ratregion
42778D6Rat17113862726160927261739Ratregion
42779D6Rat22824563512897435129218Ratregion
42781D6Rat20720964156247541562698Ratregion
42321D6Rat212249636511913651425Ratregion
42322D6Rat22524861077347210773714Ratregion
42323D6Rat22421361468813214688345Ratregion
42324D6Rat22324662834493128345175Ratregion
40770D6Rat13923163963395539634300Ratregion
40770D6Rat13923163963405339634300Ratregion
41606D6Rat14416763521491435215081Ratregion
41606D6Rat14416763521491435215248Ratregion
41608D6Rat14227364191223241912500Ratregion
41702D6Rat17924561667266516672914Ratregion
41726D6Rat17824962473073724730980Ratregion
41820D6Rat22213562988655129886690Ratregion
44074D6Got5413764236768142367818Ratregion
44024D6Got715961700986017010021Ratregion
44025D6Got20418862092140320921591Ratregion
44027D6Got918561998301119983196Ratregion
44029D6Got1516362368006023680221Ratregion
44030D6Got1428362355769923557984Ratregion
44031D6Got1215362315328223153430Ratregion
44032D6Got139062379738623797474Ratregion
44035D6Got1720862587351625873721Ratregion
44038D6Got2129562737592027376215Ratregion
44039D6Got2217362730693527307104Ratregion
44040D6Got1815762747173227471889Ratregion
44040D6Got1815762747173227471889Ratregion
44041D6Got1915562598850625988661Ratregion
44043D6Got19712662765329527653421Ratregion
44044D6Got2321562842296628423183Ratregion
44045D6Got2430062875966028759960Ratregion
44050D6Got4016762898582228985989Ratregion
44054D6Got3113763358620133586338Ratregion
44056D6Got2815562912292329123078Ratregion
44058D6Got2627563330926133309536Ratregion
44059D6Got3825763562070035620954Ratregion
44061D6Got3924763747429237474539Ratregion
44063D6Got3421863537535635375576Ratregion
44064D6Got3313863562072635620864Ratregion
44065D6Got4215063869622538696375Ratregion
44066D6Got4822663999081339991039Ratregion
44067D6Got4911864058269140582809Ratregion
44068D6Got5016164083215440832315Ratregion
44069D6Got5220864098285640983064Ratregion
44070D6Got19923264107509741075329Ratregion
60525D6Got2025962618228926182548Ratregion
60530D6Got2515462712070527120860Ratregion
60531D6Got2728963153978931540074Ratregion
60532D6Got2925363270431432704567Ratregion
60535D6Got3513263407368034073812Ratregion
60536D6Got3712963688572536885854Ratregion
60537D6Got4294698927009892994Ratregion
60539D6Got4320163850625738506458Ratregion
60540D6Got4423763952980639530031Ratregion
60542D6Got4620463957175439571957Ratregion
60544D6Got5124264174835841748602Ratregion
60545D6Got5624064229693942297179Ratregion
60546D6Got5919964234734642347545Ratregion
60499D6Got1300690147189015016Ratregion
60516D6Got1613762671126926711406Ratregion
60811D6Wox16310679338907934206Ratregion
60813D6Wox9166699574839957643Ratregion
60521D6Got19426761095840010958664Ratregion
60522D6Got19512261382152013821642Ratregion
62493D6Uia216362674166526741829Ratregion
67229D6Arb2124263594302235943264Ratregion
67277D6Arb836064033503740335394Ratregion
67772D5Uwm3141670179677018606Ratregion
1357998D6Rat150172698433129843484Ratregion
1630712D6Wox2921861325274413252962Ratregion
1631647D6Got5159662191856219344Ratregion
1631998D6Wox3022362640509226405315Ratregion
1632009D6Got322110670884517088561Ratregion
1632361D6Uia728761255442912554720Ratregion
1627594D6Got30217962635170026351879Ratregion
1627875D6Got31710762012853020128637Ratregion
1628301D6Got323161691113209111481Ratregion
1629518DXGot1422996319548319585Ratregion
1629633D6Got30911064236533342365443Ratregion
1629641D6Got30011062025811520258220Ratregion
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5086351AA850129185620035552003740Ratregion
5081162RH142000190632054903205680Ratregion
5081214RH14203019762408926124089458Ratregion
5081218RH142033218679622607962478Ratregion
5084922AI17177513163931183239311963Ratregion
5086671AI41257815962436339324363552Ratregion
5081547AW43383311063560949135609601Ratregion
5085131BQ19557417464119986641200040Ratregion
5086703BE11529515362755683127556984Ratregion
5086783BM38673118464125125141251435Ratregion
5086805AA89266618861483801914838207Ratregion
5085932BM38374917364125223941252412Ratregion
5507543G4034825661015020110150457Ratregion
5502965LHCGR493657229565723449Ratregion
5503274UniSTS:23769822561988832719888552Ratregion
5503494Cyp1b184861534314515343993Ratregion
5503835PPM1G_785753362517319725173730Ratregion
5504244AL03371112362767308127673204Ratregion
5504776PMC99801P125564033232740332582Ratregion
5504242AL0336301293679727927974085Ratregion
5504266G4353714261518019215180334Ratregion
5504280D2S1690E124961458809414589343Ratregion
5504312D12S1229E12362622417626224299Ratregion
5505448Id212364174494041745063Ratregion
5504823ha21804261212300512123047Ratregion
5505169Trib228163854610638546387Ratregion
5505261Hnrnpf32561614537516145698Ratregion
5505492PCU64649100661791096217911968Ratregion
5505905UniSTS:49603872162718620427186925Ratregion
5505907UniSTS:4960359162517209725172188Ratregion
5506336MARC_49992-49993:1124119588:2062542128425421642Ratregion
5506389UniSTS:479086539611422171142756Ratregion
5506344UniSTS:47890414262566010825660250Ratregion
5506519ADCY3_103481962720279627203615Ratregion
5506229Epas195678178407817935Ratregion
5506431Sfrs784161481306614814241Ratregion
5506835G4642623761479903214799269Ratregion
5506927G5411416462517343825173602Ratregion
5506569RAB10_104588262626683826267720Ratregion
5507225G65690218690391739039391Ratregion
5507249AI6395808362709809327098176Ratregion
5507285fb52c09.x187763068607530686952Ratregion
5499565AI327407139463330667033308064Ratregion
5500105UniSTS:23680523863380986533810103Ratregion
5500583RH13607319561499973114999926Ratregion
5500202G6700149461262923912629733Ratregion
5502573RH12541010964007523040076005Ratregion
5500505RH12659020162128221821282416Ratregion
5500695RH8059223162723462727234858Ratregion
5500442fc63b12.x1064067795040678279Ratregion
5500442fc63b12.x1064067797040678279Ratregion
5500459MARC4015-4016062529339225293827Ratregion
5500509RH12691424962114139521141644Ratregion
5500689RH8004618863403893334039121Ratregion
5503278UniSTS:23771323261453283514533067Ratregion
5503284UniSTS:237721230691989769199206Ratregion
5503376Slc8a160561327159013272195Ratregion
5500959MARC_9961-9962:996688712:139763175324531753642Ratregion
5501237PMC16375P146861429792814298396Ratregion
5501558D11S41871378657484875749863Ratregion
5501564emaa29561362228513622580Ratregion
5501736MARC_10279-10280:998924900:1100462675511826756122Ratregion
5501786MARC_12189-12190:1004712897:113263484325334843385Ratregion
5501878MARC_16687-16688:1017861800:124862523163725232402Ratregion
5502002MARC_23457-23458:1027109061:146862547283525473303Ratregion
5502026MARC_24055-24056:1030023107:114762512425125124609Ratregion
5502694Emilin1131262546011125461423Ratregion
Position Markers

Peak: (D6Rat42)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2619,987,911 - 19,988,050 (+)MAPPER
Rnor_6.0621,165,591 - 21,165,729NCBI
Rnor_5.0631,059,179 - 31,059,317UniSTS
RGSC_v3.4619,901,342 - 19,901,481RGD
RGSC_v3.4619,901,343 - 19,901,481UniSTS
RGSC_v3.1619,904,295 - 19,904,434RGD
Celera619,556,115 - 19,556,253UniSTS
SHRSP x BN Map619.5099RGD
SHRSP x BN Map619.5099UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general allele: DA alleles cause stronger skeletal structure and strength 2293455
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293455
qtl_general software package: MAPMAKER/EXP 2293455
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the midshaft and distal region and measurements taken from pQCT images 2293455