Bmd20 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd20 (Bone mineral density QTL 20) Rattus norvegicus

Symbol: Bmd20
Name: Bone mineral density QTL 20
RGD ID: 2293706
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: total volumetric bone mineral density   (CMO:0001728)    
LOD Score: 4.3
P Value: 2.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.265,074,497 - 19,988,050RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0613,122,958 - 21,165,729RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0623,080,221 - 31,059,317RGDRnor5.0
RGSC_v3.4613,286,615 - 19,901,481RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific Genetic Loci for Femoral Neck Bone Mass and Strength Identified in Inbred COP and DA Rats. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2632Fshrfollicle stimulating hormone receptor651988255406785Rat
7695048LOC102549991uncharacterized LOC102549991654858265487213Rat
3007Lhcgrluteinizing hormone/choriogonadotropin receptor656618715728109Rat
1308625Gtf2a1lgeneral transcription factor 2A subunit 1 like657528145834797Rat
7534510Pkm-ps2pyruvate kinase M1/2, pseudogene 2657784445780055Rat
41108217LOC120103455uncharacterized LOC120103455658086065869766Rat
727878Ston1stonin 1658431865892557Rat
41304927Ube2s-ps2ubiquitin-conjugating enzyme E2S, pseudogene 2658829885884287Rat
1565310Ppp1r21protein phosphatase 1, regulatory subunit 21659015185970684Rat
7584786LOC102546644uncharacterized LOC102546644660015366012391Rat
1562291Foxn2forkhead box N2660186536065216Rat
11412449LOC108351324nuclear cap-binding protein subunit 2 pseudogene661430276146570Rat
41259853LOC120103456uncharacterized LOC120103456661830656195327Rat
1562306H2az1-ps2H2A.Z variant histone 1, pseudogene 2663629736363359Rat
41009777LOC120103457uncharacterized LOC120103457663870726392670Rat
41130543LOC120103458uncharacterized LOC120103458663936926397003Rat
727935Fbxo11F-box protein 11664867616562664Rat
41013989Ndufb1-ps3NADH:ubiquinone oxidoreductase subunit B1, pseudogene 3664996916500020Rat
2322311Msh6mutS homolog 6665626316579995Rat
68940Kcnk12potassium two pore domain channel subfamily K member 12667401476790664Rat
41092315LOC120103460uncharacterized LOC120103460667877276788596Rat
620786Msh2mutS homolog 2668137936872960Rat
621365Epcamepithelial cell adhesion molecule668801426896103Rat
41376381LOC120103461uncharacterized LOC120103461669315796939747Rat
40945724Rps15a-ps4ribosomal protein S15a, pseudogene 4669800346980728Rat
41096318LOC120103462uncharacterized LOC120103462669892077002165Rat
9388783LOC103692554uncharacterized LOC103692554670057227020485Rat
40978669LOC120103464uncharacterized LOC120103464670066217015159Rat
41362460LOC120103463uncharacterized LOC120103463670195397034241Rat
11443157LOC108351172uncharacterized LOC108351172670729367078802Rat
41126532LOC120093413small nucleolar RNA SNORD113/SNORD114 family670824167082482Rat
41002896LOC120093446small nucleolar RNA SNORA17670843127084445Rat
2258Calm2calmodulin 2670916247104284Rat
1591638Stpg4sperm-tail PG-rich repeat containing 4671088277158519Rat
1306211Ttc7atetratricopeptide repeat domain 7A671592857261826Rat
41236432LOC120103466uncharacterized LOC120103466671792317182661Rat
4888601Mir3558microRNA 3558671817517181864Rat
41053189LOC120103465uncharacterized LOC120103465672145927222511Rat
628690Mcfd2multiple coagulation factor deficiency 2672744697285841Rat
41205604LOC120103467uncharacterized LOC120103467674140827418998Rat
1564914Socs5suppressor of cytokine signaling 5674810397512644Rat
2325125LOC100359600karyopherin alpha 2-like675391657541177Rat
621545CriptCXXC repeat containing interactor of PDZ3 domain675814287589384Rat
1584658Pigfphosphatidylinositol glycan anchor biosynthesis, class F675895287617721Rat
621626Rhoqras homolog family member Q676136327652047Rat
1311680Atp6v1e2ATPase H+ transporting V1 subunit E2676673597673711Rat
1588160Tmem247transmembrane protein 247676965177701464Rat
2324313LOC100362645Egam-1N-like677519447755356Rat
68404Epas1endothelial PAS domain protein 1677902367871246Rat
41305804Eif3h-ps1eukaryotic translation initiation factor 3, subunit H, pseudogene 1679393607940434Rat
61925Prkceprotein kinase C, epsilon679650488451966Rat
1562146RGD1562146RGD1562146681767638181995Rat
7702239Pgam1-ps7phosphoglycerate mutase 1, pseudogene 7683156798319172Rat
41299849LOC120093191uncharacterized LOC120093191683854728398688Rat
41212443LOC120093190uncharacterized LOC120093190684523228461174Rat
40962187LOC120103469uncharacterized LOC120103469684613448463197Rat
7502774LOC102551445uncharacterized LOC102551445684651758473251Rat
1562788Srbd1S1 RNA binding domain 1684735918664544Rat
7522754LOC102551210uncharacterized LOC102551210687060148734589Rat
41091305LOC120103470uncharacterized LOC120103470688310278850178Rat
7534844LOC102551142uncharacterized LOC102551142689733988974582Rat
1310792Six2SIX homeobox 2689748598981345Rat
620909Six3SIX homeobox 3690401239043336Rat
11423888LOC108351167uncharacterized LOC108351167690456109061487Rat
41070373LOC120103471uncharacterized LOC120103471690838699109478Rat
1583783Slc25a3-ps2solute carrier family 25 member 3, pseudogene 2691535169155654Rat
1310453Camkmtcalmodulin-lysine N-methyltransferase691989459580200Rat
41018048LOC120093505U6 spliceosomal RNA693449909345096Rat
41254971LOC120093192uncharacterized LOC120093192693782959397884Rat
41148650LOC120093312U6 spliceosomal RNA695747829574888Rat
1310143Preplprolyl endopeptidase-like695803679609957Rat
9172621LOC103692550uncharacterized LOC103692550695841589590523Rat
3709Slc3a1solute carrier family 3 member 1696081699641881Rat
3374Ppm1bprotein phosphatase, Mg2+/Mn2+ dependent, 1B696466959707471Rat
6496793LOC100910809uncharacterized LOC100910809697717479789422Rat
1306575Lrpprcleucine-rich pentatricopeptide repeat containing698598679942294Rat
11496786Rpl26-ps12ribosomal protein L26, pseudogene 12699204349921084Rat
620300Abcg8ATP binding cassette subfamily G member 8699456299964912Rat
620298Abcg5ATP binding cassette subfamily G member 5699651189990563Rat
1310286Dync2li1dynein cytoplasmic 2 light intermediate chain 16999253710025403Rat
41028128LOC120093294U6 spliceosomal RNA61002706810027172Rat
1304935Plekhh2pleckstrin homology, MyTH4 and FERM domain containing H261003283710132081Rat
1560519ThadaTHADA, armadillo repeat containing61018394210488007Rat
7527307LOC102547863uncharacterized LOC10254786361045227210478048Rat
1308913Zfp36l2zinc finger protein 36, C3H type-like 261049003210494073Rat
11488608LOC108351166uncharacterized LOC10835116661052667810530961Rat
7609114Sypl1-ps2synaptophysin-like 1, pseudogene 261054549710548918Rat
41317467LOC120093193uncharacterized LOC12009319361061074610635328Rat
41221660LOC120093194uncharacterized LOC12009319461061996410624725Rat
7612440LOC102548368uncharacterized LOC10254836861075002610768661Rat
7556929LOC102548459wiskott-Aldrich syndrome protein family member 1-like61082928010831419Rat
11501632Trnai-uau2transfer RNA isoleucine (anticodon UAU) 261083035410830446Rat
41013930LOC120093196uncharacterized LOC12009319661084041310846118Rat
71071Haao3-hydroxyanthranilate 3,4-dioxygenase61084523510864863Rat
1306803Mta3metastasis associated 1 family, member 361086702810987221Rat
41029443LOC120093195uncharacterized LOC12009319561087036510884418Rat
628832Kcng3potassium voltage-gated channel modifier subfamily G member 361105131111099264Rat
41017011LOC120093197uncharacterized LOC12009319761117154911174023Rat
1306111Cox7a2lcytochrome c oxidase subunit 7A2 like61118428411198287Rat
7673523LOC102554883uncharacterized LOC10255488361121195611220443Rat
1304690Eml4EMAP like 461121954511334824Rat
41086840Tpt1-ps10tumor protein, translationally-controlled 1 pseudogene 1061127659911281855Rat
7670283LOC102556624uncharacterized LOC10255662461137269211391056Rat
1584001H3f3a-ps3H3.3 histone A, pseudogene 361142150211422456Rat
1311939Pkdccprotein kinase domain containing, cytoplasmic61145568611465002Rat
11485961LOC108351164uncharacterized LOC10835116461146570511480227Rat
40976299LOC120103472uncharacterized LOC12010347261150009711506294Rat
41369146LOC120103473uncharacterized LOC12010347361154293711571649Rat
7517311LOC102553857uncharacterized LOC10255385761156367411635988Rat
6500550LOC100910081uncharacterized LOC10091008161159164611595180Rat
7752374LOC102554045uncharacterized LOC10255404561164210311685731Rat
41061512LOC120093297U6 spliceosomal RNA61167129611671408Rat
1597030Psme3-ps3proteasome activator subunit 3, pseudogene 361171370711714533Rat
9236593LOC103692540phosphomannomutase 1 pseudogene61172600911726743Rat
7641948LOC102552412uncharacterized LOC10255241261208624212306215Rat
11472968Trnan-guu7transfer RNA asparagine (anticodon GUU) 761211289212112965Rat
41209507LOC120093412U1 spliceosomal RNA61216164612161808Rat
41084834LOC120093453small nucleolar RNA SNORA1761259463112594762Rat
41343787LOC120103474uncharacterized LOC12010347461264155012651167Rat
6501902Set-ps7Set nuclear proto-oncogene, pseudogene 761290888912920762Rat
41135465LOC120103475uncharacterized LOC12010347561304145813055736Rat
3717Slc8a1solute carrier family 8 member A161319460913547369Rat
41176911LOC120093498U4 spliceosomal RNA61320151713201659Rat
1306878Thumpd2THUMP domain containing 261392474213976657Rat
1303057Tmem178atransmembrane protein 178A61400462914063677Rat
11506404LOC108351161uncharacterized LOC10835116161408466814150295Rat
41271659LOC120103476uncharacterized LOC12010347661411879214128563Rat
7726994LOC102551891uncharacterized LOC10255189161419089814203284Rat
621280Map4k3mitogen-activated protein kinase kinase kinase kinase 361427662314446321Rat
7610953LOC102551744eukaryotic translation initiation factor 1-like61434740114348136Rat
1583704Cdkl4cyclin-dependent kinase-like 461444982214492568Rat
1310949Sos1SOS Ras/Rac guanine nucleotide exchange factor 161453387014613348Rat
1560224Arhgef33Rho guanine nucleotide exchange factor 3361458292214715014Rat
1597031Eif4a2-ps2eukaryotic translation initiation factor 4A2, pseudogene 261471092714712015Rat
1563988Morn2MORN repeat containing 261471879914725281Rat
1310340Dhx57DExH-box helicase 5761472530514776321Rat
1311168Gemin6gem (nuclear organelle) associated protein 661478608614790631Rat
1311615Ttc39dtetratricopeptide repeat domain 39D61480275314811516Rat
1307425Srsf7serine and arginine rich splicing factor 761481177514818968Rat
1359459Galmgalactose mutarotase61483754014889484Rat
41194476LOC120093299U6 spliceosomal RNA61491725114917354Rat
1305861Hnrnpllheterogeneous nuclear ribonucleoprotein L-like61496995315000574Rat
41266585LOC120093309U6 spliceosomal RNA61499589114995987Rat
1305125Atl2atlastin GTPase 261513907115180421Rat
11514173LOC108351158uncharacterized LOC10835115861525788415259593Rat
7638001LOC102554703uncharacterized LOC10255470361526002815283578Rat
2460Cyp1b1cytochrome P450, family 1, subfamily b, polypeptide 161534231215350886Rat
1559836Rmdn2regulator of microtubule dynamics 261537256915443000Rat
11511748LOC108351157uncharacterized LOC10835115761566153915678064Rat
1305858Cdc42ep3CDC42 effector protein 361571089415731366Rat
41359201LOC120093233uncharacterized LOC12009323361577979215782678Rat
9259827LOC103692532uncharacterized LOC10369253261579340315800448Rat
1585899LOC679690similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G61594531515945626Rat
2324081Morf4l1-ps1mortality factor 4 like 1, pseudogene 161594752715948501Rat
1562284Qpctglutaminyl-peptide cyclotransferase61596465615996925Rat
6489794Rps17-ps9ribosomal protein S17, pseudogene 961602364216027014Rat
1310236Prkd3protein kinase D361603250716108444Rat
1311578Ndufaf7NADH:ubiquinone oxidoreductase complex assembly factor 761610863016119810Rat
1304994CebpzCCAAT/enhancer binding protein zeta61611987116137600Rat
9177508CebpzosCEBPZ opposite strand61613554616140254Rat
1585984Hnrnpf-ps4heterogeneous nuclear ribonucleoprotein F, pseudogene 461614421316146357Rat
1598187Sult6b1sulfotransferase family 6B member 161616238216187116Rat
3402Eif2ak2eukaryotic translation initiation factor 2-alpha kinase 261618900016224972Rat
41131139LOC120103477uncharacterized LOC12010347761621465816215105Rat
1311424Gpatch11G patch domain containing 1161622993316243305Rat
1359216Heatr5bHEAT repeat containing 5B61624342416323439Rat
3782Strnstriatin61633526516422159Rat
1564128Vitvitrin61644596616565644Rat
619709Fez2fasciculation and elongation protein zeta 261665457216694628Rat
40956779LOC120093475U2 spliceosomal RNA61667808216678256Rat
1308710Crim1cysteine rich transmembrane BMP regulator 161669586416870264Rat
41357253LOC120103478uncharacterized LOC12010347861681892116820617Rat
2323142Nsa2-ps2NSA2 ribosome biogenesis factor, pseudogene 261688941016892523Rat
1587169H3f3a-ps1H3.3 histone A, pseudogene 161697392316974753Rat
7711568LOC102553200uncharacterized LOC10255320061759201217596460Rat
1592088Hsp90ab1-ps3heat shock protein 90 alpha family class B member 1, pseudogene 361782661217828822Rat
41384706Ndufa12-ps1NADH:ubiquinone oxidoreductase subunit A12, pseudogene 161816135018161849Rat
11495481LOC108351326peptidyl-prolyl cis-trans isomerase D pseudogene61881549218816893Rat
41222005LOC120093295U6 spliceosomal RNA61904531919045424Rat
1583780Hspd1-ps11heat shock protein family D (Hsp60) member 1, pseudogene 1161927385119276050Rat
41200534LOC120093234uncharacterized LOC12009323461959860619614675Rat
1583779St13-ps3ST13, Hsp70 interacting protein, pseudogene 361973853019740177Rat
1583702Ldha-ps13lactate dehydrogenase A, pseudogene 1361977230219773267Rat
1305486Fam98afamily with sequence similarity 98, member A61987408219888744Rat
1304612Rasgrp3RAS guanyl releasing protein 361989536619993945Rat
7676249Rpl32-ps18ribosomal protein L32, pseudogene 1861994876019958584Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33561D6Mit5175653450075345178Ratregion
37298D6Rat10521561872366018723879Ratregion
37410D6Rat10717961952217919522352Ratregion
35411D6Rat5614461440416214404306Ratregion
35507D6Rat4317261995589919956076Ratregion
37000D6Rat18015561749359817493753Ratregion
37142D6Rat8024461653614016536392Ratregion
36737D6Rat4417361633650916336688Ratregion
34843D6Rat4014161653624316536392Ratregion
35647D6Rat5515561511882815118983Ratregion
35653D6Rat4214561998791119988050Ratregion
35963D6Rat46144650744975074641Ratregion
39716D6Rat14915061089441510894565Ratregion
38006D6Rat6923161173566911735900Ratregion
40604D6Rat173171697117919711961Ratregion
38724D6Rat8622461952513319525367Ratregion
39124D6Rat6221761239404712394267Ratregion
39190D6Rat6827061510721615107485Ratregion
42771D6Rat213121661193736119470Ratregion
42772D6Rat211125682756558275790Ratregion
42775D6Rat214236693111249311366Ratregion
42322D6Rat22524861077347210773714Ratregion
42323D6Rat22421361468813214688345Ratregion
41702D6Rat17924561667266516672914Ratregion
44024D6Got715961700986017010021Ratregion
44027D6Got918561998301119983196Ratregion
60537D6Got4294698927009892994Ratregion
60499D6Got1300690147189015016Ratregion
60811D6Wox16310679338907934206Ratregion
60813D6Wox9166699574839957643Ratregion
60521D6Got19426761095840010958664Ratregion
60522D6Got19512261382152013821642Ratregion
67772D5Uwm3141670179677018606Ratregion
1357998D6Rat150172698433129843484Ratregion
1630712D6Wox2921861325274413252962Ratregion
1631647D6Got5159662191856219344Ratregion
1632009D6Got322110670884517088561Ratregion
1632361D6Uia728761255442912554720Ratregion
1628301D6Got323161691113209111481Ratregion
1640865D6Cebr3243674037467403989Ratregion
1640899D6Got329263652459515246214Ratregion
1633593D6Wox32166668801906880356Ratregion
1632506D6Wox2361620233016202464Ratregion
7206276Six3257690399119040168Ratregion
7206276Six3257690399119041283Ratregion
7206276Six3257690401229040168Ratregion
7206626Six2893689779598978854Ratregion
5039224RH12758321761400471314004930Ratregion
5039150RH12754120461003051210030716Ratregion
5036845AU04939424961966319419663443Ratregion
5037207z381513461015032510150459Ratregion
5026038RH130666214697770769777290Ratregion
5028599AI44902330761461299614613303Ratregion
7205792RH4709611161142173211421843Ratregion
5034117RH141427215675815547581769Ratregion
5034263RH14197920461354752813547732Ratregion
5026402RH132068209698905279890736Ratregion
5029123RH14360812661481876214818888Ratregion
5034530BE119146186679639317964117Ratregion
5035104D2S270914761049391710494064Ratregion
5025152RH126790216665624266562642Ratregion
5030421BI288433179677917237791902Ratregion
5033501RH139060136686378578637993Ratregion
5025554RH12877015261613559716135749Ratregion
5025690RH129283182677902957790477Ratregion
5033737RH13993418761463479514634982Ratregion
5033843RH14032412161156328111563402Ratregion
5031199RH10300214461518016315180307Ratregion
5055041RH14357122461105167011051894Ratregion
5051154RH13447020161669440716694608Ratregion
5051589AI64401910161121974211219843Ratregion
5051591AW550279114665632116563325Ratregion
5055603RH143896126690422099042335Ratregion
5055787RH14400210761496781314967920Ratregion
5056127RH14419810261689541916895521Ratregion
5057005UniSTS:23920864761327125413271901Ratregion
5059794BE09788916361455972714559890Ratregion
505218318.MMHAP91FRF9.seq18561453304714533232Ratregion
5050148RH13388918261989565119895833Ratregion
5053819RH142869117686378778637994Ratregion
5050388RH13402821861669592816696147Ratregion
5051148RH134467206658433265843532Ratregion
5054621RH14332913861579520915795347Ratregion
5041604RH12895218361353511313535296Ratregion
5044020RH13036420161048767910487880Ratregion
5043308RH12995119861408159714081795Ratregion
5043418RH13001419461086704410867238Ratregion
5044936RH13088918461394726413947448Ratregion
5044862RH13084620261159177711591979Ratregion
5046476RH13177519061515555715155747Ratregion
5046552RH131819187670057727005959Ratregion
5046556RH13182119661440350814403704Ratregion
5045156RH131016210672326587232868Ratregion
5048882RH133160215690395609039784Ratregion
5045604RH13127318061610864516108825Ratregion
5049132RH13330418161570916815709349Ratregion
5048176RH132752206696083289608534Ratregion
5047076RH13212015061397641213976562Ratregion
5039344RH12765218061444572314445903Ratregion
5039520RH127753208665632046563911Ratregion
5039556RH127773217671594097159626Ratregion
5041952RH12915321461171217411712388Ratregion
5048532RH132957187682320998232286Ratregion
5048600RH132997181675866027586783Ratregion
5049506RH133520200679648917965091Ratregion
5040098RH12808821661596496715965183Ratregion
5043132RH12985020061483776714837966Ratregion
5040112RH12809618161082961910829800Ratregion
5041034RH12862521661500019615000412Ratregion
5041038RH128627208672855517285759Ratregion
5041038RH128627208672855517285759Ratregion
5043120RH12984318061610808016108260Ratregion
5075206RH138460249657249135725162Ratregion
5074006RH137765150671069347107084Ratregion
5075566RH138667146675822277582373Ratregion
5074256RH13791116261612715116127313Ratregion
5072570RH136925166691990289199194Ratregion
5076712RH13933521261572188215722094Ratregion
5076980RH13949018961156337611563565Ratregion
5075886RH13885315861018532510185483Ratregion
5076054RH138952166690533119053477Ratregion
5075174RH13844122961122051111220740Ratregion
5077644RH13987518561461268714612872Ratregion
5077672RH13989119861535023415350432Ratregion
5076276RH139082183696096769609859Ratregion
5079576RH14108021961573099915731218Ratregion
5077972RH14006715061126948911269639Ratregion
5078398RH14031913561492651214926647Ratregion
5079758RH14118618161544107215441253Ratregion
5079808RH141215205696537489653953Ratregion
5077710RH13991320661537928115379487Ratregion
5078718RH140511180665622266562406Ratregion
5080214RH14145018561049260710492792Ratregion
5073112RH13724519761632297016323167Ratregion
5079268RH140883197681817638181960Ratregion
5070956RH13480318261460984814610030Ratregion
5080428RH141573180695353889535568Ratregion
5073920RH13771512761471088414711011Ratregion
5074178RH13786612061457863014578750Ratregion
5063330BF40410717761010410110104278Ratregion
5067012AU048017231697470839747314Ratregion
5067118AU04795229261437191514372207Ratregion
5067700AU04758815961272519912725358Ratregion
5067848AU04749923361932995619330189Ratregion
5068434AU04714715261810055618100708Ratregion
5069460AU04648220361137897611379174Ratregion
5069576AU046405235651976955197930Ratregion
5069642AU04636523361441773514417963Ratregion
5069268AU04660824861018346510183541Ratregion
5069344AU04655814961583532115835465Ratregion
5062738AW534145181676521167652296Ratregion
5062030BE112607160697063729706532Ratregion
5063812AW535278154696108139610967Ratregion
5064428BI30219017961815036618150545Ratregion
5087480PMC20271P163761327135513271992Ratregion
5087400FSHR304654059975406301Ratregion
5083135BF39083721061620410116204311Ratregion
5080838RH14181220261142135511421686Ratregion
5080838RH14181220261142148311421686Ratregion
5081160RH14199919861354703213547230Ratregion
5089995AU049487117698062139806359Ratregion
5081218RH142033218679622607962478Ratregion
5086805AA89266618861483801914838207Ratregion
5507543G4034825661015020110150457Ratregion
5502965LHCGR493657229565723449Ratregion
5503274UniSTS:23769822561988832719888552Ratregion
5503494Cyp1b184861534314515343993Ratregion
5504242AL0336301293679727927974085Ratregion
5504266G4353714261518019215180334Ratregion
5504280D2S1690E124961458809414589343Ratregion
5504823ha21804261212300512123047Ratregion
5505261Hnrnpf32561614537516145698Ratregion
5505492PCU64649100661791096217911968Ratregion
5506229Epas195678178407817935Ratregion
5506431Sfrs784161481306614814241Ratregion
5506835G4642623761479903214799269Ratregion
5507225G65690218690391739039391Ratregion
5500583RH13607319561499973114999926Ratregion
5500202G6700149461262923912629733Ratregion
5503278UniSTS:23771323261453283514533067Ratregion
5503284UniSTS:237721230691989769199206Ratregion
5503376Slc8a160561327159013272195Ratregion
5501237PMC16375P146861429792814298396Ratregion
5501558D11S41871378657484875749863Ratregion
5501564emaa29561362228513622580Ratregion
Position Markers

Flank 1: (D6Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.265,074,497 - 5,074,641 (-)MAPPER
Rnor_6.0613,122,958 - 13,123,101NCBI
Rnor_5.0623,080,221 - 23,080,364UniSTS
RGSC_v3.4613,286,615 - 13,286,759RGD
RGSC_v3.4613,286,616 - 13,286,759UniSTS
RGSC_v3.1613,286,615 - 13,286,759RGD
Celera64,866,677 - 4,866,820UniSTS
SHRSP x BN Map61.1499UniSTS
SHRSP x BN Map61.1499RGD
Peak: (D6Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.265,074,497 - 5,074,641 (-)MAPPER
Rnor_6.0613,122,958 - 13,123,101NCBI
Rnor_5.0623,080,221 - 23,080,364UniSTS
RGSC_v3.4613,286,615 - 13,286,759RGD
RGSC_v3.4613,286,616 - 13,286,759UniSTS
RGSC_v3.1613,286,615 - 13,286,759RGD
Celera64,866,677 - 4,866,820UniSTS
SHRSP x BN Map61.1499UniSTS
SHRSP x BN Map61.1499RGD
Flank 2: (D6Rat42)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2619,987,911 - 19,988,050 (+)MAPPER
Rnor_6.0621,165,591 - 21,165,729NCBI
Rnor_5.0631,059,179 - 31,059,317UniSTS
RGSC_v3.4619,901,342 - 19,901,481RGD
RGSC_v3.4619,901,343 - 19,901,481UniSTS
RGSC_v3.1619,904,295 - 19,904,434RGD
Celera619,556,115 - 19,556,253UniSTS
SHRSP x BN Map619.5099RGD
SHRSP x BN Map619.5099UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general allele: COP alleles affect the hip structure 2293456
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the femoral neck and volumetric BMD (mg/mm3 ) measurements taken from pQCT slices 2293456
qtl_general software package: MAPMAKER/EXP 2293456
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456