Bmd27 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd27 (Bone mineral density QTL 27) Rattus norvegicus

Symbol: Bmd27
Name: Bone mineral density QTL 27
RGD ID: 2293700
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: trabecular volumetric bone mineral density   (CMO:0001729)    
LOD Score: 6.6
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,054,293 - 243,747,962RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01244,401,175 - 264,636,028RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01251,652,807 - 272,078,414RGDRnor5.0
RGSC_v3.41229,876,870 - 249,951,685RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific Genetic Loci for Femoral Neck Bone Mass and Strength Identified in Inbred COP and DA Rats. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2470Cyp2c12cytochrome P450, family 2, subfamily c, polypeptide 121238699859238757011Rat
71034Htr75-hydroxytryptamine receptor 71233636442233761063Rat
3089Minpp1multiple inositol-polyphosphate phosphatase 11230354483230379730Rat
61995Ptenphosphatase and tensin homolog1230630443230697070Rat
3653Exoc6exocyst complex component 61235314612235457824Rat
3546Rbp4retinol binding protein 41235893917235901315Rat
3579Rln1relaxin 11227079960227082960Rat
2939Jak2Janus kinase 21226995334227054381Rat
3008Lipalipase A, lysosomal acid type1232024351232057735Rat
619932Hhexhematopoietically expressed homeobox1235190455235196042Rat
619934Cyp2c6v1cytochrome P450, family 2, subfamily C, polypeptide 6, variant 11237938521237976238Rat
69193Hps1HPS1, biogenesis of lysosomal organelles complex 3 subunit 11241551180241577292Rat
2721Got1glutamic-oxaloacetic transaminase 11242357293242381535Rat
62061Insl6insulin-like 61227069958227073493Rat
69424Plce1phospholipase C, epsilon 11236243445236552571Rat
3963Vldlrvery low density lipoprotein receptor1224813539224850400Rat
61989Ankrd1ankyrin repeat domain 11233815851233834891Rat
621258Kif11kinesin family member 111235124371235176760Rat
727912Sgms1sphingomyelin synthase 11229996673230259591Rat
620485Pi4k2aphosphatidylinositol 4-kinase type 2 alpha1240902804240929234Rat
2366Abcc2ATP binding cassette subfamily C member 21242664657242723239Rat
620599Ifit1interferon-induced protein with tetratricopeptide repeats 11232152038232154103Rat
68324Pdlim1PDZ and LIM domain 11239042372239091074Rat
621721Avpi1arginine vasopressin-induced 11240930236240936154Rat
620370Cyp2c23cytochrome P450, family 2, subfamily c, polypeptide 231242889218242913869Rat
69307Slit1slit guidance ligand 11240409559240558127Rat
727890Mms19MMS19 homolog, cytosolic iron-sulfur assembly component1240757279240794291Rat
628742Lgi1leucine-rich, glioma inactivated 11236043269236084617Rat
621177Scd2stearoyl-Coenzyme A desaturase 21243169171243182231Rat
621085Crtac1cartilage acidic protein 11241091679241233677Rat
1304677Pank1pantothenate kinase 11232324718232395445Rat
621176Scdstearoyl-CoA desaturase1243269745243282878Rat
620379Cyp2c7cytochrome P450, family 2, subfamily c, polypeptide 71237332641237388714Rat
1303232Pyroxd2pyridine nucleotide-disulphide oxidoreductase domain 21241523278241549083Rat
1305165Ranbp6RAN binding protein 61227572394227576915Rat
1305166Tctn3tectonic family member 31239414003239425273Rat
619834A1cfAPOBEC1 complementation factor1229736037229823499Rat
67380Mbl2mannose binding lectin 21228016439228024736Rat
620363Cyp2c13cytochrome P450, family 2, subfamily c, polypeptide 131238786764238867195Rat
1304872Ifit1blinterferon-induced protein with tetratricopeptide repeats 1B-like1232122618232167317Rat
3312Pgam1phosphoglycerate mutase 11240723832240731443Rat
70931Cpn1carboxypeptidase N subunit 11242844575242873465Rat
621676Acta2actin alpha 2, smooth muscle1231746527231759307Rat
3696Slc1a1solute carrier family 1 member 11226549932226631925Rat
620368Cyp2c22cytochrome P450, family 2, subfamily c, polypeptide 221238991698239031323Rat
620161Cyp26a1cytochrome P450, family 26, subfamily a, polypeptide 11235471368235475204Rat
619831FasFas cell surface death receptor1231798963231832591Rat
735177Zfyve27zinc finger FYVE-type containing 271240979831241003193Rat
1304912Lipmlipase, family member M1231618145231637599Rat
69265Entpd1ectonucleoside triphosphate diphosphohydrolase 11239425515239552323Rat
2469Cyp2c11cytochrome P450, subfamily 2, polypeptide 111236762719236799069Rat
1307804Ifit2interferon-induced protein with tetratricopeptide repeats 21232102570232108638Rat
1305568Pax2paired box 21243616509243697454Rat
1305536Hectd2HECT domain E3 ubiquitin protein ligase 21234274967234345598Rat
708441Lipflipase F, gastric type1231493498231511845Rat
2861Ideinsulin degrading enzyme1235002984235102448Rat
69410Asah2N-acylsphingosine amidohydrolase 21229865662229973253Rat
1304716Cwf19l1CWF19 like cell cycle control factor 11242997720243020989Rat
1307012Papss23'-phosphoadenosine 5'-phosphosulfate synthase 21230454314230539332Rat
1305617Marchf5membrane associated ring-CH-type finger 51234931137234953849Rat
1305104Ankrd2ankyrin repeat domain 21240847111240856563Rat
1306261Pkd2l1polycystin 2 like 1, transient receptor potential cation channel1243032891243070031Rat
1307313Dkk1dickkopf WNT signaling pathway inhibitor 11228381521228385202Rat
1306399Ccnjcyclin J1239659588239677367Rat
1306403Pdcd1lg2programmed cell death 1 ligand 21227158941227223938Rat
1302988Smarca2SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 21224191125224358640Rat
1306839Plgrktplasminogen receptor with a C-terminal lysine1227099005227111277Rat
1307959Hpse2heparanase 2 (inactive)1241582904242284348Rat
1306551Bloc1s2biogenesis of lysosomal organelles complex-1, subunit 21243024611243031749Rat
1305054DnttDNA nucleotidylexotransferase1239856391239888283Rat
1308570Atad1ATPase family, AAA domain containing 11230544227230610524Rat
1307862Ankrd22ankyrin repeat domain 221231639035231670537Rat
1305026Tnks2tankyrase 21234567888234621079Rat
1307058Erlin1ER lipid raft associated 11242921147242956472Rat
1307776Opalinoligodendrocytic myelin paranodal and inner loop protein1239891137239909388Rat
1307779Rfx3regulatory factor X31225449872225709622Rat
1308521Nkx2-3NK2 homeobox 31242478130242481083Rat
1306661Chukcomponent of inhibitor of nuclear factor kappa B kinase complex1242959539242995066Rat
1307336Morn4MORN repeat containing 41240888338240898644Rat
1310016Ric1RIC1 homolog, RAB6A GEF complex partner 11227285510227384553Rat
1310026Cstf2tcleavage stimulation factor subunit 2, tau variant1228952617228956183Rat
1307744Pik3ap1phosphoinositide-3-kinase adaptor protein 11240090854240245007Rat
1305340Cep55centrosomal protein 551235832823235848401Rat
1304966CutccutC copper transporter1242622281242637048Rat
1309271Kcnv2potassium voltage-gated channel modifier subfamily V member 21224999552225014062Rat
1311704Lcorligand dependent nuclear receptor corepressor1240298565240405627Rat
1309804Rnlsrenalase, FAD-dependent amine oxidase1231037481231309855Rat
1309132Ppp1r3cprotein phosphatase 1, regulatory subunit 3C1234460958234465961Rat
1311468Slc16a12solute carrier family 16, member 121232184004232262170Rat
1309724Lipklipase, family member K1231532893231564567Rat
1311431Aldh18a1aldehyde dehydrogenase 18 family, member A11239375657239407956Rat
1310408Cc2d2bcoiled-coil and C2 domain containing 2B1239561506239655771Rat
1312043Cox15cytochrome c oxidase assembly homolog COX151242605588242622279Rat
1310475Hoga14-hydroxy-2-oxoglutarate aldolase 11240856991240884243Rat
1308660Gldcglycine decarboxylase1227883249227962119Rat
1310638Entpd7ectonucleoside triphosphate diphosphohydrolase 71242559365242601044Rat
1306525Mlanamelan-A1227469537227483343Rat
1308172Ubtd1ubiquitin domain containing 11240794570240845795Rat
1308728Cnnm1cyclin and CBS domain divalent metal cation transport mediator 11242296367242354957Rat
1309391Tpd52l3TPD52 like 31227781173227785040Rat
1309295Cdc37l1cell division cycle 37-like 11226705019226733994Rat
1309482Fra10ac1FRA10A associated CGG repeat 11235969071236001074Rat
1305314Zfp518azinc finger protein 518A1239719305239744978Rat
1308252Ffar4free fatty acid receptor 41235873576235891597Rat
1308588Loxl4lysyl oxidase-like 41241396183241416385Rat
1309820Hellshelicase, lymphoid specific1236701704236748239Rat
1305320Rcl1RNA terminal phosphate cyclase-like 11226824561226869046Rat
1308843Cyp26c1cytochrome P450, family 26, subfamily C, polypeptide 11235458961235468433Rat
1308281Hif1anhypoxia inducible factor 1 subunit alpha inhibitor1243419175243440464Rat
1307644Wnt8bWnt family member 8B1243354145243376000Rat
1309844Pde6cphosphodiesterase 6C1235909583235965435Rat
1309990Uhrf2ubiquitin like with PHD and ring finger domains 21227814639227877907Rat
1307934R3hcc1lR3H domain and coiled-coil containing 1-like1241317199241395240Rat
1310575Ch25hcholesterol 25-hydroxylase1232014877232016195Rat
1308497Kif20bkinesin family member 20B1232428293232483798Rat
1310039Spata6lspermatogenesis associated 6-like1226630470226682979Rat
1310369Sfrp5secreted frizzled-related protein 51241006762241011224Rat
727831Ermp1endoplasmic reticulum metallopeptidase 11227383992227422120Rat
1563697Cyp2c24cytochrome P450, family 2, subfamily c, polypeptide 241236873967236936238Rat
1564753Pum3pumilio RNA-binding family member 31225074332225113995Rat
1561251RGD1561251RGD15612511236008481236025140Rat
1559756Tll2tolloid-like 21239912648240028168Rat
1565057Tekt5l1tektin 5 like 11226689519226705125Rat
1561933BlnkB-cell linker1239753640239821113Rat
1560656Noc3lNOC3-like DNA replication regulator1236556037236585372Rat
1565682Lipo1lipase, member O11231311828231328805Rat
1565695Akr1b8-ps1aldo-keto reductase family 1, member B8, pseudogene 11230808233230809832Rat
1564216Myofmyoferlin1235673666235822413Rat
1309129Ndufb8NADH:ubiquinone oxidoreductase subunit B81243408656243413715Rat
1309811Marveld1MARVEL domain containing 11240954050240958101Rat
619885Ak3adenylate kinase 31226737472226764647Rat
1311595Brd10bromodomain containing 101227490983227572246Rat
1560354Lipnlipase, family member N1231584950231603456Rat
1311155Il33interleukin 331227701964227736374Rat
1564670Cpeb3cytoplasmic polyadenylation element binding protein 31234749138234931219Rat
1585881Nip7-ps2nucleolar pre-rRNA processing protein NIP7, pseudogene 21227152984227153506Rat
1583011Stambpl1STAM binding protein-like 11231699620231745034Rat
1560326Fgfbp3fibroblast growth factor binding protein 31234644023234646028Rat
1583839Golga7bgolgin A7 family, member B1241056427241080890Rat
1583840Dnmbpdynamin binding protein1242736189242829431Rat
1586598Sorbs1sorbin and SH3 domain containing 11239107882239330276Rat
1584666Eef1b2-ps3eukaryotic translation elongation factor 1 beta 2, pseudogene 31227799668227800398Rat
1583513Pcgf5polycomb group ring finger 51234063854234180022Rat
1566211Cd274CD274 molecule1227116674227137379Rat
1564130Btaf1B-TFIID TATA-box binding protein associated factor 11234653219234743903Rat
1564625Tm9sf3transmembrane 9 superfamily member 31240032060240085125Rat
1562542Rps12l6ribosomal protein S12 like 61235541127235541541Rat
1359681Ifit3interferon-induced protein with tetratricopeptide repeats 31232114166232119311Rat
1566000Plpp6phospholipid phosphatase 61226679100226681952Rat
1584155Slc25a28solute carrier family 25 member 281242530877242542140Rat
1565505Glis3GLIS family zinc finger 31225976029226395849Rat
1563648Scd4stearoyl-coenzyme A desaturase 41243203433243216007Rat
1589453Ppid-ps2peptidylprolyl isomerase D, pseudogene 21225740072225741290Rat
1588156MGC93861hypothetical protein LOC6820101240863403240864762Rat
1588239Phyh-ps1phytanoyl-CoA 2-hydroxylase, pseudogene 11226688444226689337Rat
1587390Prkg1protein kinase cGMP-dependent 11228409605229638794Rat
1595370Scd3stearoyl-coenzyme A desaturase 31243093057243114451Rat
1598329Sec31bSEC31 homolog B, COPII coat complex component1243376283243404557Rat
1591855Exosc1exosome component 11240734777240745431Rat
1591867Rrp12ribosomal RNA processing 121240672378240705992Rat
1595116Rpp30ribonuclease P/MRP subunit p301233786048233808958Rat
1593044Arhgap19Rho GTPase activating protein 191240571554240617361Rat
1597562Dedd-ps1death effector domain-containing, pseudogene 11231765378231766485Rat
1595146Metap2-ps5methionyl aminopeptidase 2, pseudogene 51233106861233108815Rat
1597998Ciapin1-ps1cytokine induced apoptosis inhibitor 1, pseudogene 11230312531230354392Rat
1598008Nutf2-ps1nuclear transport factor 2, pseudogene 11230295241230297105Rat
1598012Rps27a-ps28ribosomal protein S27a, pseudogene 281234661778234662393Rat
1591882Frat2FRAT regulator of WNT signaling pathway 21240654120240656449Rat
1591893Zdhhc16zinc finger DHHC-type palmitoyltransferase 161240745606240757009Rat
1597109Trmt6-ps1tRNA methyltransferase 6, pseudogene 11227636838227639063Rat
1595908Slc35g1solute carrier family 35, member G11236163593236172115Rat
1596438Psma5-ps2proteasome 20S subunit alpha 5, pseudogene 21232583582232584351Rat
1596451Ears2l1glutamyl-tRNA synthetase 2-like 11232504870232506634Rat
2319280Chchd4-ps1coiled-coil-helix-coiled-coil-helix domain containing 4, pseudogene 11227987584227988841Rat
2319920Cyp2c7l1cytochrome P450, family 2, subfamily c, polypeptide 7 like 11238457701238466744Rat
2320073Cyp2c55cytochrome P450, family 2, subfamily c, polypeptide 551237009411237054555Rat
2320131Cyp2c66lcytochrome P450, family 2, subfamily c, polypeptide 66 like1238215982238266699Rat
2322962Npm1-ps13nucleophosmin 1, pseudogene 131232631385232632634Rat
2321667Lipjlipase family member J1231363526231376784Rat
2323148Tmem258-ps1transmembrane protein 258, pseudogene 11243721747243722003Rat
2322594Cycs-ps1cytochrome c, somatic, pseudogene 11227995655227996114Rat
2323640Cyp2c6_v1-ps1cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1, pseudogene 11238332354238339457Rat
2325578Mir107microRNA 1071232337767232337853Rat
2325609Mir101-2microRNA 101-21226860371226860467Rat
4888610Mir3085microRNA 30851241088905241088993Rat
2325049Eif4e-ps2eukaryotic translation initiation factor 4E, pseudogene 21225371014225371531Rat
6488119Cyp2c66cytochrome P450, family 2, subfamily c, polypeptide 661237078517237169841Rat
6492554LOC100911555uncharacterized LOC1009115551235790867235800531Rat
6486355Hnrnpc-ps6heterogeneous nuclear ribonucleoprotein C, pseudogene 61239425495239429608Rat
6491302LOC100911718cytochrome P450 2C6-like1237693101237722462Rat
6490137Cypl1cytochrome P450 like 11238568421238597061Rat
6495932Rps17-ps1ribosomal protein S17, pseudogene 11224590238224590650Rat
7517961Thoc3-ps1THO complex 3, pseudogene 11225665659225666454Rat
7526703LOC102549070uncharacterized LOC1025490701232418940232428236Rat
7501631LOC102547392uncharacterized LOC1025473921241048266241059019Rat
7536824Sephs1-ps1selenophosphate synthetase 1, pseudogene 11236309546236310671Rat
7666330Rps4x-ps1ribosomal protein S4, X-linked, pseudogene 11231210277231211564Rat
7640229LOC102555231uncharacterized LOC1025552311239335354239350999Rat
7656472LOC102555714uncharacterized LOC1025557141224884342224938169Rat
7595572LOC102553702uncharacterized LOC1025537021234506902234511615Rat
7659550LOC102548095uncharacterized LOC1025480951230966323231037345Rat
7555190Cstb-ps1cystatin B, pseudogene 11242661894242662481Rat
7599954LOC102557104uncharacterized LOC1025571041224657115224660713Rat
7546946Pak1-ps1p21 (RAC1) activated kinase 1, pseudogene 11241780638241787272Rat
7605594LOC102554176uncharacterized LOC1025541761240939155240942812Rat
7552279LOC102547905uncharacterized LOC1025479051230784284230831831Rat
7566943LOC102555989uncharacterized LOC1025559891225289547225334401Rat
7554188Tdpoz1-ps20TD and POZ domain containing 1, pseudogene 201241613455241616687Rat
7732471LOC102549247uncharacterized LOC1025492471234979363234991619Rat
7715694LOC102546345uncharacterized LOC1025463451226521231226549807Rat
7716077LOC102548668uncharacterized LOC1025486681243600353243602047Rat
7718071LOC102553733uncharacterized LOC1025537331240625369240638280Rat
7700759LOC102555808uncharacterized LOC1025558081225114347225140414Rat
7710008Phb1-ps9prohibitin 1, pseudogene 91227073574227075424Rat
9179158LOC103691349uncharacterized LOC1036913491234225875234229702Rat
9147096Frat1FRAT regulator of WNT signaling pathway 11240638309240640857Rat
9377071Tbc1d12TBC1 domain family, member 121236603597236685859Rat
9404564LOC10369134460S ribosomal protein L29 pseudogene1230875934230876374Rat
9453920LOC103691317uncharacterized LOC1036913171224095049224105835Rat
11466397Cyp2c6_v1-ps2cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1, pseudogene 21238352261238391716Rat
11437438Rpl35al10ribosomal protein L35A like 101236705133236705600Rat
11367759LOC108349471uncharacterized LOC1083494711241577258241595463Rat
11406254LOC10834910440S ribosomal protein S8 pseudogene1236965480236966094Rat
11385874LOC108353431glyceraldehyde-3-phosphate dehydrogenase pseudogene1233710372233711552Rat
11409422LOC108348917uncharacterized LOC1083489171224434444224436629Rat
11479482LOC108349475uncharacterized LOC1083494751243163002243169001Rat
11481274LOC10834943360S ribosomal protein L7a pseudogene1227542130227543021Rat
11512881LOC108349463uncharacterized LOC1083494631235822486235828622Rat
14398574Mir6317-1microRNA mir-6317-11239398926239399052Rat
41320941LOC120100024uncharacterized LOC1201000241233596287233599642Rat
41275859LOC120100037uncharacterized LOC1201000371240470370240472812Rat
41276096LOC120100456small nucleolar RNA SNORA171241497983241498105Rat
41276972LOC120097584uncharacterized LOC1200975841240899545240902660Rat
41277114Rnu6-525RNA, U6 small nuclear 5251226541765226541871Rat
41285154Cyp2c6_v1-ps5cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1, pseudogene 51237919053237923665Rat
41089904LOC120100148U6 spliceosomal RNA1233558763233558869Rat
41091492LOC120100179U6 spliceosomal RNA1238147730238147827Rat
41142846LOC120098084uncharacterized LOC1200980841226451090226457544Rat
41171347LOC120100015uncharacterized LOC1201000151226782511226787383Rat
41207320Trit1-ps1tRNA isopentenyltransferase 1, pseudogene 11242387348242412800Rat
41259893LOC120100023uncharacterized LOC1201000231232340468232362337Rat
41174790LOC120100038uncharacterized LOC1201000381241318766241337316Rat
41210766LOC120100165U6 spliceosomal RNA1237755141237755246Rat
41363471LOC120100035uncharacterized LOC1201000351239872667239883614Rat
41096103Csnk2a1-ps2casein kinase 2 alpha 1, pseudogene 21242861730242865414Rat
41119829LOC120100289U2 spliceosomal RNA1230410837230411027Rat
41120962LOC120100041uncharacterized LOC1201000411243736689243757175Rat
41261854Cyp2c6v1l1cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1 like 11237244891237283416Rat
41330694LOC120100014uncharacterized LOC1201000141226759144226764358Rat
41391967LOC120100177U6 spliceosomal RNA1237852631237852728Rat
41097335LOC120100391small nucleolar RNA SNORA511225495834225495966Rat
41178207Cyp2c6_v1-ps3cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1, pseudogene 31237228235237233616Rat
41342888LOC120100040uncharacterized LOC1201000401243154968243160487Rat
41343048LOC120100493small nucleolar RNA U31234564075234564231Rat
41366654Snora12small nucleolar RNA, H/ACA box 121243001398243001540Rat
41099479LOC120098584cytochrome P450 2C7-like1237771336237834092Rat
41265067LOC120097454uncharacterized LOC1200974541229247793229294393Rat
41265797LOC120100026uncharacterized LOC1201000261234639342234643034Rat
41266338LOC120097461uncharacterized LOC1200974611229029316229033061Rat
41216261LOC120098083uncharacterized LOC1200980831224544345224550155Rat
41289208Gstp1-ps1glutathione S-transferase pi 1, pseudogene 11230595811230597945Rat
41344757LOC120100022uncharacterized LOC1201000221231682210231689443Rat
41344988Josd2-ps1Josephin domain containing 2, pseudogene 11241012586241031268Rat
41289643Rpl27a-ps13ribosomal protein L27a, pseudogene 131236760660236762396Rat
41291421LOC120100496U4 spliceosomal RNA1231197748231197830Rat
41183805LOC120100267U1 spliceosomal RNA1227762446227762607Rat
41270400LOC120100168U6 spliceosomal RNA1237316377237316482Rat
41348011LOC120100039uncharacterized LOC1201000391241329290241343424Rat
41399668Gapdh-ps55Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 551238984195238985108Rat
41104961LOC120098598translation initiation factor IF-2-like1240294696240299161Rat
41400972LOC120100007uncharacterized LOC1201000071224550777224558046Rat
41401218Rnu6-613RNA, U6 small nuclear 6131225971183225971289Rat
41163236LOC120097462uncharacterized LOC1200974621229200143229213723Rat
41198685LOC120100028uncharacterized LOC1201000281236114521236133735Rat
41273033LOC120100018uncharacterized LOC1201000181227451357227453734Rat
41108088LOC120100033uncharacterized LOC1201000331238501943238504312Rat
41377637LOC120100479U6atac minor spliceosomal RNA1225488774225488891Rat
40998086LOC120100020uncharacterized LOC1201000201230384996230411034Rat
40948512LOC120100445small nucleolar RNA SNORA171232787072232787201Rat
40973840LOC120100441small nucleolar RNA SNORA171228916697228916830Rat
40974054LOC120100134U6 spliceosomal RNA1238926408238926515Rat
40950760LOC120100009uncharacterized LOC1201000091224569800224574317Rat
40953009LOC120100359small nucleolar RNA SNORA81231098458231098594Rat
41012984LOC120097545uncharacterized LOC1200975451239484888239496808Rat
40977760LOC120100011uncharacterized LOC1201000111224732926224747712Rat
40955270Rpl7a-ps25ribosomal protein L7a, pseudogene 251228084261228086232Rat
40956048LOC120100208small nucleolar RNA SNORA711232131169232131300Rat
40956323Rnu6-630RNA, U6 small nuclear 6301243043698243043804Rat
40999271LOC120100019uncharacterized LOC1201000191227782742227792669Rat
40929454Rpl27a-ps11ribosomal protein L27a, pseudogene 111226599524226609228Rat
40981719LOC120100036uncharacterized LOC1201000361239932606239939339Rat
41004520LOC120100010uncharacterized LOC1201000101224677005224690946Rat
40961697LOC120097534uncharacterized LOC1200975341239197281239204076Rat
41008230LOC120100195U6 spliceosomal RNA1233392193233392295Rat
40939684Cyp2c6_v1-ps4cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1, pseudogene 41237673566237678251Rat
40989644LOC120100406small nucleolar RNA SNORA481230277767230277910Rat
41009383Scd-ps1stearoyl-CoA desaturase, pseudogene 11243119299243137168Rat
40968931LOC120100016uncharacterized LOC1201000161227395243227398988Rat
41074929LOC120100113U4 spliceosomal RNA1230366830230366976Rat
41048873LOC120100034uncharacterized LOC1201000341238607015238665792Rat
41025384LOC120100008uncharacterized LOC1201000081224568140224570488Rat
41025615LOC120100017uncharacterized LOC1201000171227432377227441119Rat
41245632LOC1201002175S ribosomal RNA1243285618243285736Rat
41246778LOC120100114U4 spliceosomal RNA1239700173239700374Rat
41029999LOC120100025uncharacterized LOC1201000251234369639234371254Rat
41136177Rnu6-571RNA, U6 small nuclear 5711236964451236964553Rat
41317889LOC120100013uncharacterized LOC1201000131226555109226567867Rat
41034025LOC120100447small nucleolar RNA SNORA171233401988233402113Rat
41299898LOC120100436small nucleolar RNA SNORA171233608349233608479Rat
41336947LOC120100027uncharacterized LOC1201000271236043040236049095Rat
41303954LOC120100032uncharacterized LOC1201000321238291013238316860Rat
41066878LOC120100152U6 spliceosomal RNA1237403828237403930Rat
41237401LOC120100185U6 spliceosomal RNA1234959802234959900Rat
41239575LOC120100188U6 spliceosomal RNA1240788425240788524Rat
41023146LOC120100158U6 spliceosomal RNA1231804196231804302Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10445D1Wox251981238755477238755659Ratregion
10446D1Mgh291221238755490238755596Ratregion
11148D1Mgh251701229550480229550676Ratregion
34009D1Mit341241225126575225126682Ratregion
34517D1Mgh321091241799011241799120Ratregion
36083D1Rat1191731236036277236036450Ratregion
35266D1Rat791251240698709240698822Ratregion
36874D1Rat821261243747836243747962Ratregion
36950D1Rat771751231688927231689108Ratregion
36960D1Rat761441224569538224569684Ratregion
37030D14Rat31591242824821242824860Ratregion
37030D14Rat31591242824825242824866Ratregion
37902D1Rat1691391224054293224054420Ratregion
36570D1Rat1181751234846351234846526Ratregion
34969D1Rat781681240781320240781488Ratregion
35671D1Rat801211241499713241499846Ratregion
35945D1Rat751741228985440228985618Ratregion
38024D1Rat2351241241584888241585028Ratregion
38078D1Rat1422381240829765240830002Ratregion
40422D1Rat3713001228617884228618176Ratregion
40530D1Rat3051261241154744241154866Ratregion
40028D1Rat3011741228581588228581766Ratregion
39264D1Rat1941241240147537240147657Ratregion
42282D1Rat4751411232156370232156510Ratregion
41392D1Rat3021591226660307226660468Ratregion
41418D1Rat3041291235620999235621134Ratregion
42530D1Rat4452251225436894225437098Ratregion
42531D1Rat4883131230985234230985530Ratregion
42532D1Rat4461491230496217230496355Ratregion
42533D1Rat3722471235742472235742729Ratregion
42537D1Rat4482001239582202239582406Ratregion
42538D1Rat4492431240444757240444980Ratregion
42539D1Rat4502001241515752241515957Ratregion
41598D1Rat3031251233392538233392661Ratregion
41610D1Rat3002781227604230227604520Ratregion
41882D1Rat4744321224262121224262540Ratregion
43276D1Got2481591234969098234969259Ratregion
43422D1Got2251961227357370227357566Ratregion
43423D1Got2281191225824951225825067Ratregion
43425D1Got2461731227677207227677380Ratregion
43426D1Got2311101225713778225713888Ratregion
43428D1Got2452011228602908228603109Ratregion
43430D1Got2372171240318000240318215Ratregion
43431D1Got2382111243481139243481352Ratregion
43432D1Got2352281235960339235960569Ratregion
43433D1Got2361331235992054235992187Ratregion
43435D1Wox241111237976134237976247Ratregion
43437D1Got2322721240317869240318141Ratregion
43438D1Got2822341237388773237389007Ratregion
60222D1Got2241551227075434227075585Ratregion
60225D1Got2301601227112235227112395Ratregion
60227D1Got2412951240558520240558815Ratregion
60242D1Got2811401239096230239096370Ratregion
70473D1mD19Mit111501241196247241196397Ratregion
629594D1Hmgc11581243559115243559273Ratregion
60008D11Got821881234106874234107057Ratregion
66406D1Mco51541240460068240460245Ratregion
66590D1Mco26911238755483238755574Ratregion
66610D1Mco351861231916478231916666Ratregion
66685D1Uia142951230338477230338772Ratregion
66692D1Uia162641228972050228972319Ratregion
67309D1Arb532981234050971234051271Ratregion
1576370D1Ztm22891242486539242486828Ratregion
1576386D1Ztm11791242490943242491122Ratregion
1630241D1M19Mit111501241196247241196397Ratregion
1631321D1Got3832741233850163233850437Ratregion
1631522D1Got3481351232102271232102408Ratregion
1628087D1Got3502331243177527243177760Ratregion
1628474D1Got3891961233036785233036981Ratregion
1628605D1Got3762151235187322235187532Ratregion
1629927D1Got3462761234486449234486727Ratregion
1639547D1Got3491471235087223235087370Ratregion
1633047D1Wox852111236760674236760885Ratregion
1639989D1Cebr61421227193527227193669Ratregion
1640354D1Got343941227099775227099869Ratregion
1635618D1Got3773351224551772224552102Ratregion
1638073D1Wox472171236762334236762551Ratregion
1638248D1Got3471601235417720235417880Ratregion
7206002Ankrd1521233820013233821266Ratregion
7206038Hif1an1351243419727243419862Ratregion
7192246Cyp26a113681235471325235472693Ratregion
7206468D19Dcr84801229174789229174869Ratregion
5035783PMC170964P13361234900509234900845Ratregion
5035805PMC19453P1881243649921243650009Ratregion
5036045Scd1761243112004243112080Ratregion
5036045Scd1761243273354243273430Ratregion
5036159D11Bir21381243621084243621222Ratregion
5036197D19Jpk11441239371764239371908Ratregion
5038848RH1273671841240957836240958020Ratregion
5038910RH1274031821242605687242605869Ratregion
5036356Htr75411233759790233760331Ratregion
5039290RH1276212021230379227230379429Ratregion
5039290RH1276212021230379227230379429Ratregion
5039298RH1276261911242921330242921521Ratregion
5036917AU0496181401227809787227809927Ratregion
5035570GOT11461242361857242362003Ratregion
5033861RH1403952501234343077234343327Ratregion
5025944RH1302951881242635621242635809Ratregion
5026008RH1305552081226765532226765740Ratregion
5026058RH1307451911232397709232397900Ratregion
5026076RH1308171871236556987236557174Ratregion
5026076RH1308171871236556987236557174Ratregion
5028609AI4264931231239744561239744684Ratregion
5028669RH802852181243695192243695410Ratregion
5026110RH1309501801241551256241551436Ratregion
5028837RH1425182111240956474240956685Ratregion
5031654AU0475912921243256623243256915Ratregion
5026400RH1320602171239552003239552220Ratregion
5028917RH1428131481232024884232025032Ratregion
5028955RH1429601771235176356235176533Ratregion
5029007RH1431612421229823266229823507Ratregion
5029059RH1433611251226733443226733568Ratregion
5031768AU0472081691238810171238810342Ratregion
5034349RH668141401233647144233647284Ratregion
5034410BE1174041501235114140235114290Ratregion
5026504RH1324671851233689317233689502Ratregion
5034514BI2806691501240930288240930438Ratregion
5034600BF3900101411226745021226745162Ratregion
5032036AU0289521421239811755239811792Ratregion
5034762AI0097651941232108048232108242Ratregion
5034802AA8934531061228023892228023998Ratregion
5029531AA8508721061230699816230699922Ratregion
5035074T154081891236084255236084444Ratregion
5029721BE0966852081225013066225013274Ratregion
5029727BE1021131621225495877225496039Ratregion
5032441AI6061811201240405422240405542Ratregion
5027157WI-187461491224845372224845521Ratregion
5029755BF3936002291239757754239757983Ratregion
5034866AA9460891351242997808242997943Ratregion
5029921BI2919091261240256005240256131Ratregion
5029931BE0979811721240918700240918872Ratregion
5029935BF3880171521226732718226732870Ratregion
5032781RH1352771941225397248225397441Ratregion
5027545AW146116821240036079240036161Ratregion
5030125BE1107231641232483576232483740Ratregion
5033019RH1372952171234751027234751244Ratregion
5027757RH946231811236798866236799047Ratregion
5025164BB4401501691232392480232392649Ratregion
5025194RH1273762031234741923234742126Ratregion
5025242RH1275641881227483876227484064Ratregion
502784309.MMHAP31FLC3.seq1511224842817224842968Ratregion
502784509.MMHAP88FRC9.seq2061241496461241496667Ratregion
5033269RH1382102171242350960242351177Ratregion
5033309RH1383611731234462295234462468Ratregion
5025304RH1278051881242889376242889564Ratregion
5028005M262701421243179211243179353Ratregion
5028057Results_ER_8_28_95_2_42.seq1881226018279226018467Ratregion
5033491RH1390251341233804250233805282Ratregion
5030723BE1077601621243180034243180196Ratregion
5030741BE1078591951227535916227536111Ratregion
5033669RH1396732071229828574229828781Ratregion
5025666RH1291951951226737498226737693Ratregion
5025670RH1292091801234460983234461163Ratregion
5025768RH1295871571227387958227388115Ratregion
5031043BE1214122001235094902235095102Ratregion
5051937RH947441351235893954235894089Ratregion
5051136RH1344602061238705213238705419Ratregion
5053569RH1427251321240034589240034721Ratregion
5056767RH1445681501243000457243000607Ratregion
5051939RH947451581242357493242357651Ratregion
5054693RH1433711281234752351234752479Ratregion
5059478AI5561071371233816132233816269Ratregion
5057582BE0956342051243443177243443382Ratregion
5057696BF3860261921232270245232270437Ratregion
5056323RH1443121341230112036230112170Ratregion
5058830AA8993092031241007030241007233Ratregion
5059690BF3942031641234588842234589006Ratregion
5056813RH1445951541230575172230575326Ratregion
5056841RH1446111951235772341235772549Ratregion
5057209D1Bda602001227080097227080297Ratregion
5057211D1Bda612341227053939227054173Ratregion
5057213D1Bda622381231831132231831370Ratregion
5057244AA9579111841235195228235195412Ratregion
5055365RH1437591911236927295236927486Ratregion
5055407RH1437832371243181476243181714Ratregion
5059774BE0978361811227637259227637440Ratregion
5059800BE1032161661241176348241176514Ratregion
5055511RH1438431191233636861233636980Ratregion
5055685RH1439431141242602779242602893Ratregion
5058232BF3868611601234618677234618837Ratregion
5050068RH1338442171226868658226868875Ratregion
5053123RH1424661451239753691239753836Ratregion
5058366BF4197481001236552440236552540Ratregion
5059200BF3876381711227785652227785823Ratregion
7192165Htr71071233638000233638107Ratregion
5057590BF3922451791229323292229323471Ratregion
5057730BE101442971239702718239702815Ratregion
5050504RH1340942201233825496233825716Ratregion
5053857RH1428911061227572429227572535Ratregion
5050050RH1338332171242959637242959854Ratregion
5053959RH1429491411227837535227837676Ratregion
5054143RH1430551661240373795240373961Ratregion
5050196RH1339171861236171784236171970Ratregion
5053279RH1425561501227412517227412667Ratregion
5051599AW0603821431240640708240640851Ratregion
5050976RH1343672071237388393237388600Ratregion
5050976RH1343672071238503991238504198Ratregion
5041824RH1290801701240757291240757461Ratregion
5044000RH1303532021227385201227385403Ratregion
5040808RH1284951811227490216227490397Ratregion
5040876RH1285341511242530914242531065Ratregion
5040928RH1285641931242357367242357560Ratregion
5044772RH1307951921239415438239415630Ratregion
5041228RH1287362011233815953233816154Ratregion
5041238RH1287421941235002985235003179Ratregion
5043628RH1301352101234620261234620471Ratregion
5044984RH1309162191234644389234644608Ratregion
5045164RH1310212051241396355241396560Ratregion
5045494RH1312101881226733691226733879Ratregion
5041396RH1288332181240093119240093337Ratregion
5043928RH1303112001233815948233816148Ratregion
5044602RH1306981941240734930240735124Ratregion
5048786RH1331051971229558329229558526Ratregion
5046422RH1317432121230378658230378870Ratregion
5044302RH1305251841226631740226631924Ratregion
5045368RH1311382181238991800238992018Ratregion
5047438RH1323281981230701713230701911Ratregion
5045080RH1309721501230259662230259812Ratregion
5047630RH1324382031227491044227491247Ratregion
5047694RH1324751801235468886235469066Ratregion
5048974RH1332132051243440391243440596Ratregion
5046606RH1318502081240756721240756929Ratregion
5045908RH1314482001228024334228024534Ratregion
5047968RH1326332021227384319227384521Ratregion
5046764RH1319412121231744808231745020Ratregion
5046768RH1319432081241554909241555117Ratregion
5048094RH1327052151228051798228052013Ratregion
5046970RH1320592171239744637239744854Ratregion
5047072RH1321181971224849997224850194Ratregion
5048250RH1327941911242357883242358074Ratregion
5049712RH1336382131241006247241006460Ratregion
5049742RH1336551851229865769229865954Ratregion
5039332RH1276451871234461029234461216Ratregion
5042258RH1293311891227054969227055158Ratregion
5047306RH1322511911235457541235457732Ratregion
5047316RH1322572031241080608241080811Ratregion
5048476RH1329252091227981845227982054Ratregion
5048626RH1330121871242844614242844801Ratregion
5049508RH1335212001243180749243180949Ratregion
5040250RH1281752171239375731239375948Ratregion
5042892RH1297071871241000222241000409Ratregion
5042930RH1297291541240957905240958059Ratregion
5039448RH1277111841227736156227736340Ratregion
5042988RH1297632061227483132227483338Ratregion
5043146RH1298581831241002920241003103Ratregion
5043160RH1298661881235002987235003175Ratregion
5042540RH1294961571242736252242736409Ratregion
5040638RH1283981841242605836242606020Ratregion
5043306RH1299501891227099140227099329Ratregion
7192197Cyp26a12831235471563235471846Ratregion
5041086RH1286541931226681606226681799Ratregion
5040640RH1283991921235673939235674131Ratregion
5041364RH1288152101232184046232184256Ratregion
5072040RH1354302151235028590235028805Ratregion
5075418RH1385821401225013448225013588Ratregion
5075634RH1387071651227638457227638622Ratregion
5072332RH1367881541232324805232324959Ratregion
5075958RH1388951661236551249236551415Ratregion
5076786RH139377811240350734240350815Ratregion
5076930RH1394612031230543098230543301Ratregion
5076934RH1394632191234343077234343296Ratregion
5075236RH1384782061242722900242723106Ratregion
5077104RH1395632151232024414232024629Ratregion
5077332RH1396951901232261919232262109Ratregion
5077906RH1400282051243181390243181595Ratregion
5078742RH1405251411234461029234461170Ratregion
5078100RH1401431971226739381226739578Ratregion
5078142RH1401682131233820715233820928Ratregion
5078208RH1402061911238699949238700140Ratregion
5080158RH1414182001227054207227054407Ratregion
5080202RH1414441941227223455227223650Ratregion
5079082RH1407251881240872963240874033Ratregion
5072892RH1371141861240888342240888528Ratregion
5079308RH1409071581240757291240757450Ratregion
5071166RH1349252161235800220235800436Ratregion
5073390RH1374082051225013851225014056Ratregion
5080460RH1415911991227398099227398298Ratregion
5078752RH1405311691240886403240886572Ratregion
5078834RH1405792091232122819232123028Ratregion
5078842RH1405831911243266316243266507Ratregion
5073550RH1375012481235740471235740719Ratregion
5073732RH1376061371227503687227503824Ratregion
5073276RH1373421801231637349231637529Ratregion
5073306RH1373601811229972891229973072Ratregion
5071944RH1353751861232025259232025445Ratregion
5072104RH1366531981242400878242401076Ratregion
5074518RH1380631481229432243229432391Ratregion
5071408RH1350642191240672409240672628Ratregion
5073740RH1376111391243381527243382051Ratregion
5071614RH1351842141227867943227868157Ratregion
5061792AW5335381531227720881227721034Ratregion
5063436BF4042892331232131994232132227Ratregion
5066620AU0482491821228839017228839199Ratregion
5067478AU0477202151230529290230529505Ratregion
5067550AU0476771301239086072239086202Ratregion
5067658AU0476131361226142736226142872Ratregion
5068020AU0473973141242838588242838902Ratregion
5068020AU0473973141242838644242838902Ratregion
5068436AU0471461761238810160238810333Ratregion
5068490AU0471141831234031858234032041Ratregion
5069989RH944051681231832140231832304Ratregion
5070143RH944971311227080020227080152Ratregion
5070193RH945261081224845310224845416Ratregion
5070328D11440801228022336228022416Ratregion
5069268AU0466082481227712117227712193Ratregion
5062126BE1062381761230032447230032623Ratregion
5065336BI2971111931243159257243159450Ratregion
5064056BE1205731531226629825226629978Ratregion
5060720BE1109581651227734650227734815Ratregion
5060796BF3891601451239682454239682599Ratregion
5065966BE1163391591234683370234683529Ratregion
5066004BE1164861721227808352227808524Ratregion
5066010BF4130851551227814162227814317Ratregion
5061856AI0294702181239042435239042653Ratregion
5062004BF3971021511233828248233828399Ratregion
5063556BF4043532001229024644229024844Ratregion
5062366AI4547802051239544484239544689Ratregion
5065510AI764749921240845592240845684Ratregion
5065654BF4061501831239553991239554174Ratregion
5065736BE1097541661226737930226738096Ratregion
5064346BI3020532101241554556241554766Ratregion
5065942BE1162232201236928239236928459Ratregion
5065952BE1163071711241808118241808289Ratregion
5061130AW5327861881243442406243442594Ratregion
5064542BE1081061571231832364231832521Ratregion
5064564BF3993691821234953471234953653Ratregion
5066158BF4136691051240297541240297646Ratregion
5066418AU0483681821241398763241398945Ratregion
5061404BF3963371941228989146228989340Ratregion
5063216BF3985861811235160745235160926Ratregion
5063278BI3016151571240208156240208313Ratregion
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5064842BF3998451741226551852226552026Ratregion
5084322AA8501951251232328438232328563Ratregion
5086965BM3883561631243135960243136123Ratregion
5086149AA8498951941240856363240856557Ratregion
5082937BF3904491611239165541239165702Ratregion
5083427BF3911132371243182924243183162Ratregion
5083455BF391310901229849422229849512Ratregion
5090871AU05001911061243172504243173610Ratregion
5083825AI5996231411234608259234608400Ratregion
5083931AA9431781971240733512240733709Ratregion
5088777AU0487692391240558515240558754Ratregion
5088891AU0488312531238462568238462821Ratregion
5090441AU0497522681234560676234560723Ratregion
5083986AI0121201001240581088240581188Ratregion
5084034AA9434361211224232526224232647Ratregion
5084442AI1780671031235865333235865436Ratregion
5084716AA8515282181236216304236216354Ratregion
5084338AI1693982041232015144232015348Ratregion
5084360AI169450981242354572242354670Ratregion
5081985BE1189801641227894395227894559Ratregion
5084924AI2367391991226747183226747382Ratregion
5085443BM3903552161241582926241583142Ratregion
5090653AU0498811821235402509235402691Ratregion
5088609AU0486712671224206540224206807Ratregion
5080740RH1417542161236925717236925932Ratregion
5085417BQ2021241601236060732236060892Ratregion
5080770RH1417712121243024711243024923Ratregion
5086333AA9564241911227386019227386210Ratregion
5081362AA9573511901240035200240035391Ratregion
5083243BI2757651711227877511227877682Ratregion
5086626AA8002732061234461197234461402Ratregion
5081505BF4201661371242400107242400244Ratregion
5081661BG3714851001235815494235815594Ratregion
5081679BE1179921671228387043228387210Ratregion
5085703BM3907921861239120761239120947Ratregion
5081769BE1181401501225080480225080630Ratregion
5503308UniSTS:2379191701227572418227572588Ratregion
5503310UniSTS:2379412801240928715240928995Ratregion
5503312UniSTS:2379292411234741355234741596Ratregion
5502932Sfrp511631241007573241008736Ratregion
5503496UniSTS:4629858251235471578235472403Ratregion
5503809UniSTS:4713329901243371293243372283Ratregion
5503716SEPHS1_92888341236308327236309637Ratregion
5503738PTEN_2348811230696845230697726Ratregion
5504568PMC305695P22611242478215242478476Ratregion
5504638PMC31882P13191230596003230596322Ratregion
5504205BARC00732191225740516225740721Ratregion
5505132Prkg12731229638525229638798Ratregion
5505364Wnt8b5551243373286243373841Ratregion
5505869UniSTS:495969911233759890233759981Ratregion
5506155UniSTS:498485741243273318243273392Ratregion
5506127UniSTS:498426621228383046228383108Ratregion
5506587BF0553461071229997886229997993Ratregion
5506739G450201971242593354242593553Ratregion
5507003fi76b03.x18451227470073227470919Ratregion
5499997UniSTS:2360199281228001590228002518Ratregion
5500519RH1358331191233108263233108380Ratregion
5501502D6S16418381235195627235196465Ratregion
5506185UniSTS:4987469881228383396228384384Ratregion
5506579UniSTS:2778901311243373357243373488Ratregion
5501976MARC_21710-21711:1036508963:101243386465243387081Ratregion
5502006MARC_23511-23512:1027359213:11661240735869240736596Ratregion
5502403RH1247432851239549937239550222Ratregion
Position Markers

Flank 1: (D1Rat169)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21224,054,293 - 224,054,420 (+)MAPPER
Rnor_6.01244,401,175 - 244,401,301NCBI
Rnor_5.01251,652,807 - 251,652,933UniSTS
RGSC_v3.41229,876,870 - 229,876,997RGD
RGSC_v3.41229,876,871 - 229,876,997UniSTS
RGSC_v3.11230,040,894 - 230,041,020RGD
Celera1221,246,733 - 221,246,859UniSTS
RH 3.4 Map11615.1UniSTS
RH 3.4 Map11615.1RGD
RH 2.0 Map11198.1RGD
SHRSP x BN Map1122.07RGD
FHH x ACI Map1111.18RGD
Peak: (D1Rat169)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21224,054,293 - 224,054,420 (+)MAPPER
Rnor_6.01244,401,175 - 244,401,301NCBI
Rnor_5.01251,652,807 - 251,652,933UniSTS
RGSC_v3.41229,876,870 - 229,876,997RGD
RGSC_v3.41229,876,871 - 229,876,997UniSTS
RGSC_v3.11230,040,894 - 230,041,020RGD
Celera1221,246,733 - 221,246,859UniSTS
RH 3.4 Map11615.1UniSTS
RH 3.4 Map11615.1RGD
RH 2.0 Map11198.1RGD
SHRSP x BN Map1122.07RGD
FHH x ACI Map1111.18RGD
Flank 2: (D1Rat82)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21243,747,836 - 243,747,962 (+)MAPPER
Rnor_6.01264,635,903 - 264,636,028NCBI
Rnor_5.01272,078,289 - 272,078,414UniSTS
RGSC_v3.41249,951,495 - 249,951,685RGD
RGSC_v3.41249,951,496 - 249,951,621UniSTS
RGSC_v3.11250,212,064 - 250,212,254RGD
Celera1239,559,373 - 239,559,494UniSTS
SHRSP x BN Map1139.09RGD
SHRSP x BN Map1139.09UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1188377360224054420Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1198211513225126682Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1199368955224569684Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1207702246228581766Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
634340Hcar5Hepatocarcinoma resistance QTL 58liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1214537555226660468Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
5508828Leukc3Leukocyte quantity QTL 3eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1218108584224054420Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
6480786Bw97Body weight QTL 975.03body mass (VT:0001259)body weight (CMO:0000012)1225126575227604520Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228985440245907899Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the femoral neck and trabecular vBMD (mg/mm3 ) measurements taken from pQCT slices 2293456
qtl_general allele: COP alleles affect the hip structure 2293456
qtl_general software package: MAPMAKER/EXP 2293456
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456
qtl_statistics_details LOD of 3.6 was recorded for males and LOD of 4.5 for females 2293456