Bmd27 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL Registration

QTL: Bmd27 (Bone mineral density QTL 27) Rattus norvegicus

Symbol: Bmd27
Name: Bone mineral density QTL 27
RGD ID: 2293700
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: trabecular volumetric bone mineral density   (CMO:0001729)    
LOD Score: 6.6
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01244,401,175 - 264,636,028RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01251,652,807 - 272,078,414RGDRnor5.0
RGSC_v3.41229,876,870 - 249,951,685RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
1. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2470Cyp2c12cytochrome P450, family 2, subfamily c, polypeptide 121258709726258766873Rat
71034Htr75-hydroxytryptamine receptor 71254547964254671811Rat
3089Minpp1multiple inositol-polyphosphate phosphatase 11251045352251071045Rat
61995Ptenphosphatase and tensin homolog1251421814251487634Rat
3653Exoc6exocyst complex component 61256211879256369318Rat
3546Rbp4retinol binding protein 41256806476256813678Rat
3579Rln1relaxin 11247483298247486331Rat
2939Jak2Janus kinase 21247398667247457521Rat
3008Lipalipase A, lysosomal acid type1252816536252959348Rat
619932Hhexhematopoietically expressed homeobox1256101994256107581Rat
69193Hps1HPS1, biogenesis of lysosomal organelles complex 3 subunit 11261989178262015282Rat
2721Got1glutamic-oxaloacetic transaminase 11263246248263269762Rat
62061Insl6insulin-like 61247473292247476827Rat
69424Plce1phospholipase C, epsilon 11257156023257465440Rat
3963Vldlrvery low density lipoprotein receptor1245236819245273688Rat
61989Ankrd1ankyrin repeat domain 11254726985254745673Rat
621258Kif11kinesin family member 111256035866256088299Rat
727912Sgms1sphingomyelin synthase 11250692448250951685Rat
620485Pi4k2aphosphatidylinositol 4-kinase type 2 alpha1261337594261362509Rat
2366Abcc2ATP binding cassette subfamily C member 21263554426263612556Rat
620599Ifit1interferon-induced protein with tetratricopeptide repeats 11252944105252946170Rat
68324Pdlim1PDZ and LIM domain 11259308326259357006Rat
621721Avpi1arginine vasopressin-induced 11261365590261371519Rat
620370Cyp2c23cytochrome P450, family 2, subfamily c, polypeptide 231263778510263803166Rat
69307Slit1slit guidance ligand 11260843481260992366Rat
727890Mms19MMS19 homolog, cytosolic iron-sulfur assembly component1261191646261229070Rat
628742Lgi1leucine-rich, glioma inactivated 11256955944256996835Rat
621177Scd2stearoyl-Coenzyme A desaturase 21264059374264072433Rat
621085Crtac1cartilage acidic protein 11261527009261669614Rat
1304677Pank1pantothenate kinase 11253115400253189643Rat
621176Scdstearoyl-CoA desaturase1264159966264173061Rat
1303232Pyroxd2pyridine nucleotide-disulphide oxidoreductase domain 21261961164261987029Rat
1305165Ranbp6RAN binding protein 61247980976247985553Rat
1305166Tctn3tectonic family member 31259681435259691881Rat
619834A1cfAPOBEC1 complementation factor1250426027250514245Rat
67380Mbl2mannose binding lectin 21248435069248442669Rat
620363Cyp2c13cytochrome P450, family 2, subfamily c, polypeptide 131258796624258877023Rat
1304872Ifit1blinterferon-induced protein with tetratricopeptide repeats 1B-like1252914684252959348Rat
3312Pgam1phosphoglycerate mutase 11261158204261165814Rat
70931Cpn1carboxypeptidase N subunit 11263733887263762758Rat
621676Acta2actin alpha 2, smooth muscle1252537614252550394Rat
3696Slc1a1solute carrier family 1 member 11246955017247035159Rat
620368Cyp2c22cytochrome P450, family 2, subfamily c, polypeptide 221259257658259297270Rat
620161Cyp26a1cytochrome P450, family 26, subfamily a, polypeptide 11256382861256386729Rat
619831FasFas cell surface death receptor1252589785252624790Rat
735177Zfyve27zinc finger FYVE-type containing 271261415172261438539Rat
1304912Lipmlipase, family member M1252409232252428567Rat
69265Entpd1ectonucleoside triphosphate diphosphohydrolase 11259692020259818922Rat
2469Cyp2c11cytochrome P450, subfamily 2, polypeptide 111257676172258004428Rat
1307804Ifit2interferon-induced protein with tetratricopeptide repeats 21252894663252900727Rat
1305568Pax2paired box 21264493579264585073Rat
1305536Hectd2HECT domain E3 ubiquitin protein ligase 21255186729255254307Rat
708441Lipflipase F, gastric type1252284464252302811Rat
2861Ideinsulin degrading enzyme1255914465256014168Rat
69410Asah2N-acylsphingosine amidohydrolase 21250557042250665083Rat
1304716Cwf19l1CWF19 like cell cycle control factor 11263887014263910251Rat
1307012Papss23'-phosphoadenosine 5'-phosphosulfate synthase 21251145264251230716Rat
1305617Marchf5membrane associated ring-CH-type finger 51255842642255864131Rat
1305104Ankrd2ankyrin repeat domain 21261281859261291307Rat
1306261Pkd2l1polycystin 2 like 1, transient receptor potential cation channel1263922201263959318Rat
1307313Dkk1dickkopf WNT signaling pathway inhibitor 11248952896248956579Rat
1306399Ccnjcyclin J1259926537259944275Rat
1306403Pdcd1lg2programmed cell death 1 ligand 21247562202247629279Rat
1302988Smarca2SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 21244615811244783736Rat
1306839Plgrktplasminogen receptor with a C-terminal lysine1247502274247514540Rat
1307959Hpse2heparanase 2 (inactive)1262020903263138299Rat
1306551Bloc1s2biogenesis of lysosomal organelles complex-1, subunit 21263913901263920989Rat
1305054DnttDNA nucleotidylexotransferase1260289626260321174Rat
1308570Atad1ATPase family, AAA domain containing 11251234702251386996Rat
1307862Ankrd22ankyrin repeat domain 221252430750252461346Rat
1307058Erlin1ER lipid raft associated 11263810439263845762Rat
1307776Opalinoligodendrocytic myelin paranodal and inner loop protein1260324028260341677Rat
1307779Rfx3regulatory factor X31245853332246110648Rat
1308521Nkx2-3NK2 homeobox 31263361238263371043Rat
1306661Chukcomponent of inhibitor of nuclear factor kappa B kinase complex1263848829263884354Rat
1307336Morn4MORN repeat containing 41261323079261333383Rat
1310016Ric1RIC1 homolog, RAB6A GEF complex partner 11247688778247784219Rat
1310026Cstf2tcleavage stimulation factor subunit 2, tau variant1249574954249578520Rat
1307744Pik3ap1phosphoinositide-3-kinase adaptor protein 11260527344260679132Rat
1305340Cep55centrosomal protein 551256745251256760794Rat
1304966CutccutC copper transporter1263511537263526308Rat
1309271Kcnv2potassium voltage-gated channel modifier subfamily V member 21245396880245475011Rat
1311704Lcorligand dependent nuclear receptor corepressor1260775091260839549Rat
1309804Rnlsrenalase, FAD-dependent amine oxidase1251828285252101963Rat
1309132Ppp1r3cprotein phosphatase 1, regulatory subunit 3C1255371830255376833Rat
1311468Slc16a12solute carrier family 16, member 121252976071253054500Rat
1309724Lipklipase, family member K1252323865252355893Rat
1311431Aldh18a1aldehyde dehydrogenase 18 family, member A11259641673259674521Rat
1310408Cc2d2bcoiled-coil and C2 domain containing 2B1259998744260092810Rat
1312043Cox15cytochrome c oxidase assembly homolog COX151263494850263511510Rat
1310475Hoga14-hydroxy-2-oxoglutarate aldolase 11261291742261319743Rat
1308660Gldcglycine decarboxylase1248295140248377122Rat
1310638Entpd7ectonucleoside triphosphate diphosphohydrolase 71263448633263490308Rat
1306525Mlanamelan-A1247869756247883558Rat
1308172Ubtd1ubiquitin domain containing 11261229347261280543Rat
1308728Cnnm1cyclin and CBS domain divalent metal cation transport mediator 11263184361263243912Rat
1309391Tpd52l3TPD52 like 31248187429248202090Rat
1309295Cdc37l1cell division cycle 37-like 11247110147247139113Rat
1309482Fra10ac1FRA10A associated CGG repeat 11256881688256913617Rat
1305314Zfp518azinc finger protein 518A1260152881260178360Rat
1308252Ffar4free fatty acid receptor 41256786124256804156Rat
1308588Loxl4lysyl oxidase-like 41261833365261853599Rat
1309820Hellshelicase, lymphoid specific1257901856257953889Rat
1305320Rcl1RNA terminal phosphate cyclase-like 11247228012247272369Rat
1308843Cyp26c1cytochrome P450, family 26, subfamily C, polypeptide 11256369410256380649Rat
1308281Hif1anhypoxia inducible factor 1 subunit alpha inhibitor1264309214264319269Rat
1307644Wnt8bWnt family member 8B1264244150264266136Rat
1309844Pde6cphosphodiesterase 6C1256822099256885879Rat
1309990Uhrf2ubiquitin like with PHD and ring finger domains 21248228496248291984Rat
1307934R3hcc1lR3H domain and coiled-coil containing 1-like1261753295261833437Rat
1310575Ch25hcholesterol 25-hydroxylase1252807062252811409Rat
1308497Kif20bkinesin family member 20B1253220038253275523Rat
1310039Spata6lspermatogenesis associated 6-like1247037004247088124Rat
1310369Sfrp5secreted frizzled-related protein 51261442108261446570Rat
727831Ermp1endoplasmic reticulum metallopeptidase 11247784830247821771Rat
1563697Cyp2c24cytochrome P450, family 2, subfamily c, polypeptide 241258074797258139176Rat
1564753Pum3pumilio RNA-binding family member 31245476400245517081Rat
1561251RGD1561251RGD15612511256926672256955504Rat
1559756Tll2tolloid-like 21260348905260460791Rat
1565057RGD1565057similar to hypothetical protein FLJ328711247094538247110187Rat
1561933BlnkB-cell linker1260187023260254490Rat
1560656Noc3lNOC3-like DNA replication regulator1257469538257498844Rat
1565682Lipo1lipase, member O11252102233252117030Rat
1565695RGD1565695similar to Aldo-keto reductase family 1, member B81251599687251600674Rat
1564216Myofmyoferlin1256585410256734727Rat
1309129Ndufb8NADH:ubiquinone oxidoreductase subunit B81264298671264303712Rat
1309811Marveld1MARVEL domain containing 11261389804261393736Rat
619885Ak3adenylate kinase 31247144486247169690Rat
1311595RGD1311595similar to KIAA2026 protein1247898572247978661Rat
1563029RGD1563029similar to RIKEN cDNA 1110007C051261463873261464753Rat
1560354Lipnlipase, family member N1252375941252394226Rat
1311155Il33interleukin 331248112611248147030Rat
1564670Cpeb3cytoplasmic polyadenylation element binding protein 31255660165255842671Rat
1585881LOC680908hypothetical protein LOC6809081247555732247556767Rat
1583011Stambpl1STAM binding protein-like 11252490125252536113Rat
1560326Fgfbp3fibroblast growth factor binding protein 31255555050255557055Rat
1583839Golga7bgolgin A7 family, member B1261494511261514413Rat
1583840Dnmbpdynamin binding protein1263625503263718784Rat
1586598Sorbs1sorbin and SH3 domain containing 11259373921259502108Rat
1584666LOC681078similar to eukaryotic translation elongation factor 1 beta 21248213209248213965Rat
1583513Pcgf5polycomb group ring finger 51254974688255090925Rat
1566211Cd274CD274 molecule1247519890247539659Rat
1564130Btaf1B-TFIID TATA-box binding protein associated factor 11255564247255654932Rat
1564625Tm9sf3transmembrane 9 superfamily member 31260464935260517997Rat
1564887RGD1564887similar to 9130011E15Rik protein1262861241262891231Rat
1562542RGD1562542similar to ribosomal protein S121256453566256454005Rat
1359681Ifit3interferon-induced protein with tetratricopeptide repeats 31252906234252911377Rat
1566000Plpp6phospholipid phosphatase 61247084228247087080Rat
1584155Slc25a28solute carrier family 25 member 281263420039263431312Rat
1565505Glis3GLIS family zinc finger 31246380816246564385Rat
1563648Scd4stearoyl-coenzyme A desaturase 41264094007264105473Rat
1589453LOC680623hypothetical protein LOC6806231246141856246143074Rat
1588156MGC93861hypothetical protein LOC6820101261298147261299506Rat
1587841LOC685933hypothetical protein LOC6859331257828474257885689Rat
1587819LOC685956similar to 60S ribosomal protein L27a1257674502257675008Rat
1588239LOC680727similar to Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)1247093572247094465Rat
1587390Prkg1protein kinase cGMP-dependent 11248982039250300952Rat
1595370LOC681458similar to stearoyl-coenzyme A desaturase 31263968156264003991Rat
1598329Sec31bSEC31 homolog B, COPII coat complex component1264266279264294687Rat
1591855Exosc1exosome component 11261169798261179865Rat
1591867Rrp12ribosomal RNA processing 12 homolog1261106768261140416Rat
1595116Rpp30ribonuclease P/MRP subunit p301254697247254720093Rat
1596474Cyp2b15cytochrome P450, family 2, subfamily b, polypeptide 151251325923251338404Rat
1593044Arhgap19Rho GTPase activating protein 191261015083261051515Rat
1597562LOC687722similar to death effector domain-containing1252555638252557801Rat
1595146LOC685302similar to initiation factor 2 associated 67 kDa protein1254018298254020446Rat
1597998LOC681274similar to cytokine induced apoptosis inhibitor 11251004380251005426Rat
1598008Nutf2-ps1nuclear transport factor 2, pseudogene 11250987619250989483Rat
1598012Rps27a-ps28ribosomal protein S27a, pseudogene 281255572800255573415Rat
1591882Frat2FRAT regulator of WNT signaling pathway 21261088504261091690Rat
1591893Zdhhc16zinc finger DHHC-type palmitoyltransferase 161261179971261191374Rat
1597109LOC365444similar to CGI-09 protein1248045504248047696Rat
1595908Slc35g1solute carrier family 35, member G11257076221257082655Rat
1596438LOC685259similar to Proteasome subunit alpha type 5 (Proteasome zeta chain) (Macropain zeta chain) (Multicatalytic endopeptidase complex zeta chain)1253375594253376315Rat
1596451Ears2l1glutamyl-tRNA synthetase 2-like 11253296528253303851Rat
2319729LOC100361643hypothetical LOC1003616431259694907259696539Rat
2319280LOC100361898coiled-coil-helix-coiled-coil-helix domain containing 41248402889248403604Rat
2320073LOC100361492cytochrome P450, family 2, subfamily c, polypeptide 55-like1258210311258252829Rat
2322962LOC100363483hypothetical LOC1003634831253423508253424429Rat
2321667LOC100360690tear acid-lipase-like protein-like1252154610252167791Rat
2323148LOC100363396hypothetical LOC1003633961264609753264610014Rat
2322594LOC100363655hypothetical LOC1003636551248413707248414125Rat
2325578Mir107microRNA 1071253128250253128336Rat
2325609Mir101-2microRNA 101-21247263723247263819Rat
4888610Mir3085microRNA 30851261524235261524323Rat
2325049LOC100359682eukaryotic translation initiation factor 4E-like1245774492245774938Rat
6486473LOC100912537tectonic-3-like1259096641259107087Rat
6489795LOC100911951Kv channel-interacting protein 2-like1262892552262916345Rat
6489110LOC100912084cAMP-dependent protein kinase catalytic subunit PRKX-like1248916989248928521Rat
6489920LOC100911964lymphoid-specific helicase-like1257766289257767881Rat
6490058LOC100911865TBC1 domain family member 12-like1257720824257730952Rat
6488119LOC100912265cytochrome P450 2C26-like1258283655258299904Rat
6488889LOC100912050dickkopf-related protein 1-like1248953733248956766Rat
6491699LOC100911660lymphocyte-specific helicase-like1257614688257660184Rat
6492554LOC100911555uncharacterized LOC1009115551256703104256712926Rat
6486355LOC100912575heterogeneous nuclear ribonucleoproteins C1/C2-like1259107045259111745Rat
6490472LOC100911814glycine dehydrogenase [decarboxylating], mitochondrial-like1248662935248709257Rat
6490749LOC100911854mannose-binding protein C-like1248723370248730969Rat
6490763LOC100911855F-box/WD repeat-containing protein 4-like1263029683263054925Rat
6491000LOC100911779cytochrome c oxidase assembly protein COX15 homolog1263006340263015174Rat
6491232LOC100911700bifunctional protein NCOAT-like1262982574263001218Rat
6490344LOC100911914TBC1 domain family member 12-like1257693860257750281Rat
6491645LOC100911648cytochrome c, somatic-like1248410762248411746Rat
6498974LOC100910377negative elongation factor E-like1253840054253842433Rat
6502175LOC100909771cyclin-J-like1259926502259944275Rat
6495932LOC10091093040S ribosomal protein S17-like1245013149245013549Rat
6496922LOC100910717tankyrase-2-like1255478794255532143Rat
6500207LOC100910127cytochrome P450 2B15-like1251351807251365431Rat
7517961LOC102550663THO complex subunit 3-like1246067375246069573Rat
7524986LOC102555475uncharacterized LOC1025554751244967275244968097Rat
7526703LOC102549070uncharacterized LOC1025490701253210721253219953Rat
7509876LOC102553965uncharacterized LOC1025539651255451805255478762Rat
7513185LOC102552121uncharacterized LOC1025521211258588209258596011Rat
7501631LOC102547392uncharacterized LOC1025473921261483606261494438Rat
7536824LOC102550070selenide, water dikinase 1-like1257221456257223298Rat
7613689LOC102547572uncharacterized LOC1025475721261866307261881482Rat
7666330Rps4x-ps1ribosomal protein S4, X-linked, pseudogene 11252001218252002505Rat
7640229LOC102555231uncharacterized LOC1025552311259601374259608411Rat
7656472LOC102555714uncharacterized LOC1025557141245315715245359601Rat
7595572LOC102553702uncharacterized LOC1025537021255416510255422595Rat
7609152LOC102547321uncharacterized LOC1025473211248475588248478227Rat
7628278LOC102556263uncharacterized LOC1025562631246572125246585195Rat
7659550LOC102548095uncharacterized LOC1025480951251757238251791001Rat
7555190LOC102546509cystatin-B-like1263551882263552620Rat
7615968LOC10254642960S ribosomal protein L27a-like1247004745247009551Rat
7597238LOC102549441uncharacterized LOC1025494411256380747256382689Rat
7598394LOC102554493casein kinase II subunit alpha'-like1263753577263755946Rat
7556391LOC102547391uncharacterized LOC1025473911248482090248500831Rat
7599954LOC102557104uncharacterized LOC1025571041245078449245097663Rat
7546946LOC102555060serine/threonine-protein kinase PAK 1-like1262222803262225604Rat
7551642LOC102553433uncharacterized LOC1025534331260946538260949494Rat
7605594LOC102554176uncharacterized LOC1025541761261374508261375392Rat
7552279LOC102547905uncharacterized LOC1025479051251616202251624210Rat
7566943LOC102555989uncharacterized LOC1025559891245692004245736856Rat
7553340LOC102552396uncharacterized LOC1025523961259018876259025946Rat
7554188LOC102554961TD and POZ domain-containing protein 4-like1262053105262054455Rat
7691232LOC102547032uncharacterized LOC1025470321247563467247571662Rat
7711868LOC102550766phosphatidylethanolamine-binding protein 1-like1246697358246715710Rat
7732471LOC102549247uncharacterized LOC1025492471255889861255903036Rat
7733544LOC102546432uncharacterized LOC1025464321263269851263280158Rat
7715694LOC102546345uncharacterized LOC1025463451246926646246957559Rat
7716028LOC102547813glutathione S-transferase P 1-like1251386355251387002Rat
7716077LOC102548668uncharacterized LOC1025486681264487949264490041Rat
7717295LOC102555476uncharacterized LOC1025554761259828602259926425Rat
7718071LOC102553733uncharacterized LOC1025537331261061158261070305Rat
7719645LOC102550442uncharacterized LOC1025504421248456663248473355Rat
7700759LOC102555808uncharacterized LOC1025558081245536381245544231Rat
7720631Kllnkillin, p53-regulated DNA replication inhibitor1251417849251420794Rat
7710008LOC102546806prohibitin-like1247476925247478758Rat
9138968LOC103691363uncharacterized LOC1036913631260741281260744816Rat
9175407LOC103691350uncharacterized LOC1036913501255717568255721178Rat
9141659LOC103691333uncharacterized LOC1036913331250094795250101686Rat
9179158LOC103691349uncharacterized LOC1036913491255136794255140626Rat
9147096Frat1FRAT regulator of WNT signaling pathway 11261071965261075244Rat
9148072LOC103691330uncharacterized LOC1036913301247327409247338211Rat
9187932LOC103691325uncharacterized LOC1036913251245360302245370047Rat
9108925LOC103691355uncharacterized LOC1036913551257126231257127758Rat
9194624LOC103691364uncharacterized LOC1036913641263317752263321171Rat
9162742LOC103691353uncharacterized LOC1036913531255940942255942293Rat
9168414LOC103690185protein CC2D2B-like1259877874259924270Rat
9204586LOC103691342dynein light chain 1, cytoplasmic-like1247316399247317650Rat
9071809LOC103691359uncharacterized LOC1036913591259026391259030660Rat
9123563LOC103691362uncharacterized LOC1036913621260644078260679466Rat
9223097LOC103690131tumor protein D55-like1248643331248653631Rat
9224583LOC103691338uncharacterized LOC1036913381251452441251453318Rat
9270246LOC103691326uncharacterized LOC1036913261246599944246602237Rat
9313887LOC103691356myosin heavy chain IB-like1255039890255042229Rat
9231931LOC103691336uncharacterized LOC1036913361251058647251060040Rat
9232286LOC103691335uncharacterized LOC1036913351250663536250665089Rat
9323181LOC103691361uncharacterized LOC1036913611260095481260097433Rat
9283963LOC103691339uncharacterized LOC1036913391251821679251828240Rat
9377071Tbc1d12TBC1 domain family, member 121257517128257599659Rat
9326603LOC10369134160S ribosomal protein L36a-like1252990025252993575Rat
9327785LOC103691372NAD-dependent protein deacetylase HST1-like1261070320261070926Rat
9380289LOC103691360uncharacterized LOC1036913601259608856259613125Rat
9368735LOC103691332uncharacterized LOC1036913321249879846249884246Rat
9340674LOC103691345uncharacterized LOC1036913451252487182252497528Rat
9362350LOC103691348uncharacterized LOC1036913481254719531254722216Rat
9259818LOC103691340uncharacterized LOC1036913401252473362252479907Rat
9301607LOC103691334uncharacterized LOC1036913341250373232250424935Rat
9342409LOC103691354uncharacterized LOC1036913541256962461256964142Rat
9347575LOC103691358uncharacterized LOC1036913581258951780259013819Rat
9425434LOC103691327uncharacterized LOC1036913271246623875246647311Rat
9331217LOC103691352uncharacterized LOC1036913521255996355256000981Rat
9472608NEWGENE_1565505GLIS family zinc finger 31246647364246799356Rat
9404564LOC10369134460S ribosomal protein L29 pseudogene1251666695251667135Rat
9408752LOC103690184protein CC2D2B-like1260047830260090655Rat
9412148LOC103691331uncharacterized LOC1036913311248650422248657752Rat
9413911LOC103691324uncharacterized LOC1036913241244778795244779494Rat
9453920LOC103691317uncharacterized LOC1036913171244447065244452764Rat
9454627LOC103689954ectonucleoside triphosphate diphosphohydrolase 11259958297259989651Rat
9458091LOC103691329uncharacterized LOC1036913291246986205246990035Rat
9459053LOC103691328uncharacterized LOC1036913281246736363246747100Rat
11465647LOC108349293uncharacterized LOC1083492931244612142244617696Rat
11469170LOC108349357uncharacterized LOC1083493571245557810245559469Rat
11472032LOC108349703uncharacterized LOC1083497031258128249258132013Rat
11437438LOC10834946560S ribosomal protein L35a pseudogene1257618585257618956Rat
11367759LOC108349471uncharacterized LOC1083494711262015314262048527Rat
11432159LOC10834979360S ribosomal protein L19 pseudogene1258451003258451523Rat
11405755LOC108349705uncharacterized LOC1083497051263300517263304589Rat
11406254LOC10834910440S ribosomal protein S8 pseudogene1258164137258164751Rat
11413821LOC108349826uncharacterized LOC1083498261262235513262275492Rat
11386490LOC10834970260S ribosomal protein L35a pseudogene1257911080257911451Rat
11409422LOC108348917uncharacterized LOC1083489171244858784244860281Rat
11388186LOC108349865endogenous retrovirus group K member 9 Pol protein-like1258689025258690959Rat
11410606NEWGENE_1307313dickkopf WNT signaling pathway inhibitor 11248895894248898762Rat
11388886LOC10834825860S ribosomal protein L27a pseudogene1257966995257967501Rat
11479482LOC108349475uncharacterized LOC1083494751264054092264057779Rat
11481274LOC10834943360S ribosomal protein L7a pseudogene1247950796247951597Rat
11506373NEWGENE_1306399cyclin J1260092938260110729Rat
11499329LOC10834946060S ribosomal protein L35 pseudogene1255801789255802228Rat
11512751LOC108348083delta-1-pyrroline-5-carboxylate synthase1259057407259089727Rat
11512775LOC108349825protein O-GlcNAcase-like1262923241262931894Rat
11512881LOC108349463uncharacterized LOC1083494631256734951256738238Rat
11488947LOC108349452glyceraldehyde-3-phosphate dehydrogenase pseudogene1254620547254622571Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10445D1Wox251981258765340258765521Ratregion
10446D1Mgh291221258765353258765458Ratregion
11148D1Mgh251701250195095250195290Ratregion
34009D1Mit341241245529606245529710Ratregion
34517D1Mgh321091262433584262433692Ratregion
34517D1Mgh321091262237344262237452Ratregion
36083D1Rat1191731256948847256949019Ratregion
35266D1Rat791251261133089261133201Ratregion
36874D1Rat821261264635903264636028Ratregion
36950D1Rat771751252479838252480016Ratregion
36960D1Rat761441244992467244992610Ratregion
37902D1Rat1691391244401175244401301Ratregion
36570D1Rat1181751255757870255758044Ratregion
34969D1Rat781681261215686261215853Ratregion
35671D1Rat801211261937787261937919Ratregion
35945D1Rat751741249607907249608084Ratregion
38024D1Rat2351241262022888262023027Ratregion
38078D1Rat1422381261264540261264776Ratregion
40422D1Rat3713001249242639249242930Ratregion
40530D1Rat3051261261590073261590194Ratregion
40028D1Rat3011741249206242249206417Ratregion
39264D1Rat1941241260581816260581935Ratregion
42282D1Rat4751411252948438252948577Ratregion
41392D1Rat3021591247065439247065599Ratregion
41418D1Rat3041291256533132256533264Ratregion
42530D1Rat4452251245840355245840558Ratregion
42531D1Rat4883131251776033251776328Ratregion
42532D1Rat4461491251187687251187824Ratregion
42533D1Rat3722471256654703256654959Ratregion
42537D1Rat4482001260018941260019144Ratregion
42537D1Rat4482001259848665259848868Ratregion
42538D1Rat4492431260877037260877259Ratregion
42539D1Rat4502001261953756261953960Ratregion
41598D1Rat3031251254304198254304320Ratregion
41610D1Rat3002781248012805248013094Ratregion
41882D1Rat4744321244686821244687239Ratregion
43276D1Got2481591255880588255880746Ratregion
43422D1Got2251961247757069247757264Ratregion
43423D1Got2281191246226103246226218Ratregion
43425D1Got2461731248087775248087947Ratregion
43426D1Got2311101246115479246115588Ratregion
43428D1Got2452011249227664249227864Ratregion
43430D1Got2372171260751926260752142Ratregion
43431D1Got2382111264368960264369172Ratregion
43432D1Got2352281256872919256873146Ratregion
43433D1Got2361331256904631256904763Ratregion
43437D1Got2322721260751797260752068Ratregion
60222D1Got2241551247478769247478919Ratregion
60224D1Got2292531246554654246554888Ratregion
60225D1Got2301601247515499247515658Ratregion
60227D1Got2412951260992760260993054Ratregion
60242D1Got2811401259362270259362409Ratregion
70473D1mD19Mit111501261632088261632237Ratregion
629594D1Hmgc11581264446896264447053Ratregion
60008D11Got821881255017802255017984Ratregion
66406D1Mco51541260892348260892524Ratregion
66590D1Mco26911258765346258765436Ratregion
66610D1Mco351861252708671252708858Ratregion
66685D1Uia142951251030281251030575Ratregion
66692D1Uia162641249594421249594689Ratregion
67309D1Arb532981254961912254962209Ratregion
1576370D1Ztm22891263375675263375963Ratregion
1576386D1Ztm11791263380079263380257Ratregion
1630241D1M19Mit111501261632088261632237Ratregion
1631321D1Got3832741254761056254761329Ratregion
1631522D1Got3481351252894367252894501Ratregion
1628087D1Got3502331264067730264067962Ratregion
1628474D1Got3891961253826912253827107Ratregion
1628605D1Got3762151256098862256099071Ratregion
1629927D1Got3462761255397322255397597Ratregion
1639547D1Got3491471255998697255998843Ratregion
1633047D1Wox852111257966498257966708Ratregion
1633047D1Wox852111257674005257674215Ratregion
1639989D1Cebr61421247596785247596926Ratregion
1640354D1Got343941247503045247503138Ratregion
1635618D1Got3773351244974703244975032Ratregion
1638073D1Wox472171257968158257968374Ratregion
1638073D1Wox472171257675665257675881Ratregion
1638248D1Got3471601256329231256329390Ratregion
7206002Ankrd1521254731151254732403Ratregion
7206038Hif1an1351264309738264309872Ratregion
7192246Cyp26a113681256382819256384186Ratregion
8693311rs642098611249252048249252048Ratregion
7206468D19Dcr84801249812118249812197Ratregion
5035783PMC170964P13361255812019255812354Ratregion
5035805PMC19453P1881264537908264537995Ratregion
5036045Scd1761264163576264163651Ratregion
5036045Scd1761264001538264001613Ratregion
5036159D11Bir21381264508928264509065Ratregion
5036197D19Jpk11441259637781259637924Ratregion
5036197D19Jpk11441259053515259053658Ratregion
5038848RH1273671841261393189261393372Ratregion
5038910RH1274031821263494950263495131Ratregion
5038910RH1274031821263005446263005627Ratregion
7206612Kcnip25031262913308262914666Ratregion
5036356Htr75411254670943254671483Ratregion
5039290RH1276212021251070541251070742Ratregion
5039298RH1276261911263810623263810813Ratregion
5036917AU0496181401248223321248223460Ratregion
5035570GOT11461263250813263250958Ratregion
5033861RH1403952501255253898255254147Ratregion
5025944RH1302951881263524882263525069Ratregion
5026008RH1305552081247170655247170862Ratregion
5026058RH1307451911253189436253189626Ratregion
5026076RH1308171871257469737257469923Ratregion
5028609AI4264931231260177944260178066Ratregion
5028669RH802852181264583201264583418Ratregion
5026110RH1309501801261989255261989434Ratregion
5028837RH1425182111261391827261392037Ratregion
5031654AU0475912921264146845264147136Ratregion
5026400RH1320602171259988751259988967Ratregion
5026400RH1320602171259818609259818825Ratregion
5028917RH1428131481252817070252817217Ratregion
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5029007RH1431612421250513583250513823Ratregion
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5031768AU0472081691258820032258820200Ratregion
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5034514BI2806691501261365643261365792Ratregion
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5034762AI0097651941252900138252900331Ratregion
5034802AA8934531061248730774248730879Ratregion
5034802AA8934531061248442474248442579Ratregion
5029531AA8508721061251490697251490802Ratregion
5035074T154081891256996821256997009Ratregion
5029721BE0966852081245415536245415743Ratregion
5029727BE1021131621245898149245898310Ratregion
5032441AI6061811201260839345260839464Ratregion
5027157WI-187461491245268658245268806Ratregion
5029755BF3936002291260191138260191366Ratregion
5034866AA9460891351263887098263887232Ratregion
5029921BI2919091261260690065260690190Ratregion
5029931BE0979811721261353759261353930Ratregion
5029935BF3880171521247137845247137996Ratregion
5032781RH1352771941245800711245800903Ratregion
5027545AW146116821260468955260469036Ratregion
5030125BE1107231641253275302253275465Ratregion
5033019RH1372952171255662055255662271Ratregion
5027757RH946231811258004226258004406Ratregion
5025164BB4401501691253184207253184375Ratregion
5025194RH1273762031255652953255653155Ratregion
5025242RH1275641881247892430247892617Ratregion
5025242RH1275641881247884092247884279Ratregion
502784309.MMHAP31FLC3.seq1511245266103245266253Ratregion
502784509.MMHAP88FRC9.seq2061261934533261934738Ratregion
5033269RH1382102171263239916263240132Ratregion
5033309RH1383611731255373168255373340Ratregion
5025304RH1278051881263778669263778856Ratregion
5028005M262701421264069414264069555Ratregion
5028057Results_ER_8_28_95_2_42.seq1881246419369246419556Ratregion
5033491RH1390251341254715387254716418Ratregion
5030723BE1077601621264070237264070398Ratregion
5030741BE1078591951247944493247944687Ratregion
5033669RH1396732071250519786250519992Ratregion
5025666RH1291951951247142625247142819Ratregion
5025670RH1292091801255371856255372035Ratregion
5025768RH1295871571247787621247787777Ratregion
5031043BE1214122001256006376256006575Ratregion
5051937RH947441351256806514256806648Ratregion
5051136RH1344602061258715081258715286Ratregion
5051136RH1344602061258593566258593771Ratregion
5053569RH1427251321260467465260467596Ratregion
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5051939RH947451581263246449263246606Ratregion
5054693RH1433711281255663379255663506Ratregion
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5057209D1Bda602001247483432247483631Ratregion
5057211D1Bda612341247457272247457505Ratregion
5057213D1Bda622381252623332252623569Ratregion
5057244AA9579111841256106768256106951Ratregion
5055365RH1437591911258130238258130428Ratregion
5055407RH1437832371264071679264071916Ratregion
5059774BE0978361811248046107248046287Ratregion
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5055511RH1438431191254548030254548148Ratregion
5055685RH1439431141263492042263492155Ratregion
5055685RH1439431141263002538263002651Ratregion
5058232BF3868611601255529742255529901Ratregion
5050068RH1338442171247272011247272227Ratregion
5053123RH1424661451260187075260187219Ratregion
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5059200BF3876381711248650742248650912Ratregion
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7192165Htr71071254549169254549275Ratregion
5059352AI0591571891262916089262916277Ratregion
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5050050RH1338332171263848928263849144Ratregion
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5053279RH1425561501247812177247812326Ratregion
5051599AW0603821431261075096261075238Ratregion
5041824RH1290801701261191657261191826Ratregion
5044000RH1303532021247784868247785069Ratregion
5040808RH1284951811247898793247898973Ratregion
5040876RH1285341511263420077263420227Ratregion
5040928RH1285641931263246323263246515Ratregion
5044772RH1307951921259681979259682170Ratregion
5044772RH1307951921259097185259097376Ratregion
5041228RH1287362011254727088254727288Ratregion
5041238RH1287421941255914467255914660Ratregion
5043628RH1301352101255531326255531535Ratregion
5044984RH1309162191255555417255555635Ratregion
5045164RH1310212051261833531261833735Ratregion
5045494RH1312101881247138818247139005Ratregion
5041396RH1288332181260527404260527621Ratregion
5043928RH1303112001254727083254727282Ratregion
5044602RH1306981941261169302261169495Ratregion
5048786RH1331051971250207927250208123Ratregion
5048786RH1331051971250202943250203139Ratregion
5046422RH1317432121251069972251070183Ratregion
5044302RH1305251841247036873247037056Ratregion
5045368RH1311382181259257748259257965Ratregion
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5047968RH1326332021247783986247784187Ratregion
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5039332RH1276451871255371902255372088Ratregion
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5040250RH1281752171259641748259641964Ratregion
5040250RH1281752171259057482259057698Ratregion
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5043146RH1298581831261438267261438449Ratregion
5043160RH1298661881255914469255914656Ratregion
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5040638RH1283981841263495099263495282Ratregion
5040638RH1283981841263005595263005778Ratregion
5043306RH1299501891247502410247502598Ratregion
7192197Cyp26a12831256383057256383339Ratregion
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5040640RH1283991921256586173256586364Ratregion
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5072040RH1354302151255940070255940284Ratregion
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5066158BF4136691051260731471260731575Ratregion
5066418AU0483681821261835939261836120Ratregion
5061404BF3963371941249611611249611804Ratregion
5063216BF3985861811256072290256072470Ratregion
5063278BI3016151571260642169260642325Ratregion
5064808BE1085531681259351561259351728Ratregion
5064842BF3998451741246956938246957111Ratregion
5084322AA8501951251253119121253119245Ratregion
5086965BM3883561631264026098264026260Ratregion
5086149AA8498951941261291108261291301Ratregion
5089809AU0493762031262882668262882870Ratregion
5082937BF3904491611259431576259431736Ratregion
5089943AU0494562601264609144264609397Ratregion
5083427BF3911132371264073127264073364Ratregion
5083455BF391310901250540812250540901Ratregion
5090871AU05001911061264062707264063812Ratregion
5083825AI5996231411255519325255519465Ratregion
5083931AA9431781971261167884261168080Ratregion
5088777AU0487692391260992755260992993Ratregion
5083986AI0121201001261015306261015405Ratregion
5084034AA9434361211244657228244657348Ratregion
5084442AI1780671031256777884256777986Ratregion
5084338AI1693982041252807330252807533Ratregion
5084360AI169450981263243528263243625Ratregion
5081985BE1189801641248308478248308641Ratregion
5084924AI2367391991247152309247152507Ratregion
5085443BM3903552161262020926262021141Ratregion
5090653AU0498811821256314020256314201Ratregion
5088609AU0486712671244631248244631514Ratregion
5080740RH1417542161258128365258128579Ratregion
5085417BQ2021241601256973299256973458Ratregion
5080770RH1417712121263914002263914213Ratregion
5086333AA9564241911247785686247785876Ratregion
5081362AA9573511901260468076260468266Ratregion
5083243BI2757651711248291592248291762Ratregion
5086626AA8002732061255372070255372274Ratregion
5081505BF4201661371263289242263289378Ratregion
5081661BG3714851001256727888256727987Ratregion
5081679BE1179921671248958421248958587Ratregion
5081679BE1179921671248900417248900583Ratregion
5085703BM3907921861259386801259386986Ratregion
5081769BE1181401501245482551245482700Ratregion
5503033Cyp26a101256385040256385902Ratregion
5503308UniSTS:2379191701247981001247981170Ratregion
5503310UniSTS:2379412801261364070261364349Ratregion
5503312UniSTS:2379292411255652385255652625Ratregion
5502932Sfrp511631261442920261444082Ratregion
5503496UniSTS:4629858251256383072256383896Ratregion
5503809UniSTS:4713329901264261310264262299Ratregion
5503716SEPHS1_92888341257220875257222184Ratregion
5503738PTEN_2348811251487726251488606Ratregion
5504568PMC305695P22611263367352263367612Ratregion
5504638PMC31882P13191251386458251386776Ratregion
5504205BARC00732191246142301246142505Ratregion
5505132Prkg12731250300684250300956Ratregion
5505364Wnt8b5551264263303264263857Ratregion
5505869UniSTS:495969911254671043254671133Ratregion
5506155UniSTS:498485741264163540264163613Ratregion
5506127UniSTS:498426621248954424248954485Ratregion
5506127UniSTS:498426621248896420248896481Ratregion
5506587BF0553461071250692217250692323Ratregion
5506739G450201971263482621263482817Ratregion
5506739G450201971262993117262993313Ratregion
5507003fi76b03.x18451247870293247871137Ratregion
5499997UniSTS:2360199281248419379248420306Ratregion
5500519RH1358331191254019891254020007Ratregion
5501502D6S16418381256107167256108004Ratregion
5506185UniSTS:4987469881248954774248955761Ratregion
5506185UniSTS:4987469881248896770248897757Ratregion
5506579UniSTS:2778901311264263374264263504Ratregion
5501976MARC_21710-21711:1036508963:101264276482264277097Ratregion
5502006MARC_23511-23512:1027359213:11661261170241261170967Ratregion
5502403RH1247432851259986685259986969Ratregion
5502403RH1247432851259816543259816827Ratregion
Position Markers

Flank 1: (D1Rat169)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01244,401,175 - 244,401,301NCBI
Rnor_5.01251,652,807 - 251,652,933UniSTS
RGSC_v3.41229,876,870 - 229,876,997RGD
RGSC_v3.41229,876,871 - 229,876,997UniSTS
RGSC_v3.11230,040,894 - 230,041,020RGD
Celera1221,246,733 - 221,246,859UniSTS
RH 3.4 Map11615.1UniSTS
RH 3.4 Map11615.1RGD
RH 2.0 Map11198.1RGD
SHRSP x BN Map1122.07RGD
FHH x ACI Map1111.18RGD
Peak: (D1Rat169)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01244,401,175 - 244,401,301NCBI
Rnor_5.01251,652,807 - 251,652,933UniSTS
RGSC_v3.41229,876,870 - 229,876,997RGD
RGSC_v3.41229,876,871 - 229,876,997UniSTS
RGSC_v3.11230,040,894 - 230,041,020RGD
Celera1221,246,733 - 221,246,859UniSTS
RH 3.4 Map11615.1UniSTS
RH 3.4 Map11615.1RGD
RH 2.0 Map11198.1RGD
SHRSP x BN Map1122.07RGD
FHH x ACI Map1111.18RGD
Flank 2: (D1Rat82)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01264,635,903 - 264,636,028NCBI
Rnor_5.01272,078,289 - 272,078,414UniSTS
RGSC_v3.41249,951,495 - 249,951,685RGD
RGSC_v3.41249,951,496 - 249,951,621UniSTS
RGSC_v3.11250,212,064 - 250,212,254RGD
Celera1239,559,373 - 239,559,494UniSTS
SHRSP x BN Map1139.09UniSTS
SHRSP x BN Map1139.09RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1233490105264802994Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1217372257244992610Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1236795785281795785Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1245529606282763074Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1236265430281265430Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1215711860260711860Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1236763415258766873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1238830534278228767Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1233663100273792054Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1243272341282763074Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1244401175282365384Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1235850810280850810Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1244992467282365384Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1215828102260828102Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1216324817261324817Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1252955158280632620Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1258132568282763074Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1216213318245529710Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1205603081244401301Rat
1581544Rf52Renal function QTL 520.05total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1252948438281795785Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1241482188281795785Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1191825895279986079Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1255728828282763074Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1227107736249206417Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1215711860258765521Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1238824734279986079Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1221901238266901238Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1221901238266901238Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1221901238266901238Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1221901238266901238Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1244401175264636028Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1244401175264636028Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1259295704282763074Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1258709726281795785Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1205195290250195290Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1244401175282365384Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1217054291281795785Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1193968438261264776Rat
634340Hcar5Hepatocarcinoma resistance QTL 58liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1236763415247065599Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1215828102260828102Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1225689973270689973Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1225689973270689973Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1195598053265002735Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1215684498260684498Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1244087148282763074Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1213476630278978026Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1226706329271706329Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1196395041282763074Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1249206242281795785Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1192639698278228889Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1192639698278228889Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1236795785281795785Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1249607907266793958Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1210360774264802828Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700264802994Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1198655722244992610Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1201358068252480016Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1161784422246226103Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1230420627282645769Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1208517798266948272Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1230420627262031693Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1216324817261324817Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1236265430281265430Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1215828102260828102Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1238830408266793958Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1225689973247836969Rat
6480786Bw97Body weight QTL 975.03body mass (VT:0001259)body weight (CMO:0000012)1245529606248013094Rat
5508828Leukc3Leukocyte quantity QTL 3eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1238220189244401301Rat
8693618Alc25Alcohol consumption QTL 2530.28drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1227509470249252048Rat
8693661Alc34Alcohol consumption QTL 342.20.611drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1227509470249252048Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1202571665264802994Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1227509470255131140Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1210652654255652654Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221901238266901238Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1244148899282763074Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1202571665264802994Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1242302911282763074Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1222492538267492538Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210990171255990171Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the femoral neck and trabecular vBMD (mg/mm3 ) measurements taken from pQCT slices 2293456
qtl_general allele: COP alleles affect the hip structure 2293456
qtl_general software package: MAPMAKER/EXP 2293456
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456
qtl_statistics_details LOD of 3.6 was recorded for males and LOD of 4.5 for females 2293456