Bmd36 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd36 (Bone mineral density QTL 36) Rattus norvegicus

Symbol: Bmd36
Name: Bone mineral density QTL 36
RGD ID: 2293686
Trait: femur strength trait   (VT:0010010)    
Measurement Type: femoral neck ultimate force   (CMO:0001703)    
LOD Score: 7.4
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21533,611,058 - 71,477,291RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01539,749,557 - 79,033,707RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01543,570,947 - 82,573,380RGDRnor5.0
RGSC_v3.41538,542,355 - 78,048,493RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific Genetic Loci for Femoral Neck Bone Mass and Strength Identified in Inbred COP and DA Rats. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308945Cab39lcalcium binding protein 39-like153360658833710518Rat
41401979LOC120097282U2 spliceosomal RNA153367492133675082Rat
41293971LOC120096999uncharacterized LOC120096999153371045733720290Rat
1311845Cdadc1cytidine and dCMP deaminase domain containing 1153372659033755611Rat
40958500LOC120097001uncharacterized LOC120097001153373724433743730Rat
41226911Rps9-ps9ribosomal protein S9, pseudogene 9153379928433800043Rat
1561256Shisa2shisa family member 2153380671533811013Rat
1594597Atp8a2ATPase phospholipid transporting 8A2153381730934350193Rat
7687379Eif4b-ps1eukaryotic translation initiation factor 4B, pseudogene 1153382133733823028Rat
9118704LOC103693865ETS-related transcription factor Elf-2 pseudogene153421910134230175Rat
9240540LOC103693635uncharacterized LOC103693635153435014634353750Rat
631334Nup58nucleoporin 58153435817034407160Rat
1305378Mtmr6myotubularin related protein 6153441986834457863Rat
1559605Amer2APC membrane recruitment protein 2153452509034535660Rat
7564878LOC102553536uncharacterized LOC102553536153453781634546823Rat
7537865LOC102553694uncharacterized LOC102553694153463287934634298Rat
41252262LOC120097002uncharacterized LOC120097002153463433634643804Rat
41165037LOC120097003uncharacterized LOC120097003153467601734678664Rat
1307364Spata13spermatogenesis associated 13153477847934907645Rat
1560876C1qtnf9C1q and TNF related 9153490779134922985Rat
621680Mipepmitochondrial intermediate peptidase153492619835051722Rat
1564996Tnfrsf19TNF receptor superfamily member 19153509220635158472Rat
7731808LOC102553894uncharacterized LOC102553894153527504435280674Rat
1307281Sacssacsin molecular chaperone153528578335370335Rat
1359577Sgcgsarcoglycan, gamma153538883635435072Rat
9229390LOC103693662ATP synthase F(0) complex subunit C3, mitochondrial pseudogene153542923135430741Rat
41067589LOC120097004uncharacterized LOC120097004153544330135449434Rat
40942312LOC120097165uncharacterized LOC120097165153546471635470763Rat
1308083Arl11ADP-ribosylation factor like GTPase 11153548333035485579Rat
1304571EbplEBP like153550807435531472Rat
1311339Kpna3karyopherin subunit alpha 3153553631035610066Rat
6492604Rps20-ps1ribosomal protein S20, pseudogene 1153556960235572361Rat
41185497LOC120097005uncharacterized LOC120097005153561389535629558Rat
41384664Trnas-aga14transfer RNA serine (anticodon AGA) 14153564385735643937Rat
41039398LOC120097167uncharacterized LOC120097167153566108135663884Rat
1306437Spryd7SPRY domain containing 7153570718535727704Rat
1307609Trim13tripartite motif-containing 13153573354835772676Rat
1307199Kcnrgpotassium channel regulator153577449235778818Rat
40963724LOC120097224small nucleolar RNA SNORA42/SNORA80 family153577795235778089Rat
9225352LOC103693867uncharacterized LOC103693867153579477935819218Rat
7748249LOC102547503uncharacterized LOC102547503153581875235844893Rat
41278254LOC120097006uncharacterized LOC120097006153598243136003347Rat
7545629LOC102547734uncharacterized LOC102547734153602930036045077Rat
7572036LOC102547888uncharacterized LOC102547888153629318236340994Rat
1305071Dleu7deleted in lymphocytic leukemia, 7153647953536496069Rat
1359710Rnaseh2bribonuclease H2, subunit B153654120036592016Rat
2770Gucy1b2guanylate cyclase 1 soluble subunit beta 2153658950136669441Rat
41384358LOC120097007uncharacterized LOC120097007153662261336633994Rat
7683338LOC102554746uncharacterized LOC102554746153667484036701304Rat
1593344Fam124afamily with sequence similarity 124 member A153679983636855062Rat
41169091LOC120097246small nucleolar RNA SNORA17153688496936885093Rat
1585042Serpine3serpin family E member 3153690881636931825Rat
1309480Ints6integrator complex subunit 6153690896637048043Rat
41078836Rpl38-ps7ribosomal protein L38, pseudogene 7153691855636918911Rat
41361009Sec61g-ps5Sec61 translocon subunit gamma, pseudogene 5153700904937014480Rat
41285929LOC120097011uncharacterized LOC120097011153701460037026065Rat
41312816Rpl27-ps5ribosomal protein L27, pseudogene 5153704032737044038Rat
1307337Wdfy2WD repeat and FYVE domain containing 2153708384237209559Rat
41326890LOC120097010uncharacterized LOC120097010153717982637188481Rat
1560445Defb42defensin beta 42153723475137241568Rat
1593234Rpl23a-ps2ribosomal protein L23a, pseudogene 2153723868737239254Rat
1562459Defb41defensin beta 41153725502237257543Rat
1566384Defb43defensin beta 43153727200837276626Rat
1559641Defb30defensin beta 30153729663637298429Rat
1562179Defb44defensin beta 44153731230837313370Rat
621509Ctsbcathepsin B153738963637410508Rat
61834Fdft1farnesyl diphosphate farnesyl transferase 1153741214337440198Rat
1312033Neil2nei-like DNA glycosylase 2153744467637454863Rat
2665Gata4GATA binding protein 4153745960137531291Rat
7714091LOC102548615uncharacterized LOC102548615153750585137509705Rat
41014734LOC120097012uncharacterized LOC120097012153754999437584179Rat
1308859BlkBLK proto-oncogene, Src family tyrosine kinase153762674637665053Rat
40962006LOC120097013uncharacterized LOC120097013153767434637685394Rat
1561302Fam167afamily with sequence similarity 167, member A153768522137715472Rat
1310214TdhL-threonine dehydrogenase153773982337753365Rat
628840Mtmr9myotubularin related protein 9153776916137791195Rat
41074143Trnap-agg32transfer RNA proline (anticodon AGG) 32153784763337847713Rat
1310719Xkr6XK related 6153785709638059699Rat
7643541LOC102548944uncharacterized LOC102548944153785793437900079Rat
41154191LOC120097015uncharacterized LOC120097015153790976137960128Rat
40960217LOC120097014uncharacterized LOC120097014153794255737946911Rat
2325416Mir598microRNA 598153796269237962770Rat
7579111LOC102553493uncharacterized LOC102553493153808811538097916Rat
1566025Pinx1PIN2/TERF1 interacting, telomerase inhibitor 1153809802738157143Rat
7528420LOC102549097uncharacterized LOC102549097153814419438160150Rat
1310038Sox7SRY-box transcription factor 7153818050338187264Rat
1565212C15h8orf74similar to human chromosome 8 open reading frame 74153820886438225737Rat
1586886Rp1l1RP1 like 1153825959538271269Rat
41289243LOC120097016uncharacterized LOC120097016153826171738265627Rat
1586875Prss55serine protease 55153829767438345059Rat
6498506Prss51serine protease 51153833154538337878Rat
1586868Prss52protease, serine 52153834448638353316Rat
70979Msramethionine sulfoxide reductase A153836345938677406Rat
41393057LOC120097017uncharacterized LOC120097017153838579538389490Rat
7663474LOC102554489uncharacterized LOC102554489153879909838832775Rat
7738961LOC102554677uncharacterized LOC102554677153882541038845428Rat
2325336Mir124-1microRNA 124-1153884201438842098Rat
1303307Kif13bkinesin family member 13B153890831839062849Rat
1306787Hmbox1homeobox containing 1153906780539200633Rat
41185997Hmgn4-ps7high mobility group nucleosomal binding domain 4, pseudogene 7153917739939177661Rat
1311539Ints9integrator complex subunit 9153920069639284858Rat
41229601LOC120097103uncharacterized LOC120097103153927429339277305Rat
62065Extl3exostosin-like glycosyltransferase 3153929403339384086Rat
41356815LOC120097018uncharacterized LOC120097018153939972339411086Rat
628814Fzd3frizzled class receptor 3153942136639488369Rat
11411643LOC108352940H/ACA ribonucleoprotein complex subunit 3 pseudogene153944620239446408Rat
1305049Fbxo16F-box protein 16153949226839541493Rat
41342280LOC120097019uncharacterized LOC120097019153956437639569538Rat
1307849Zfp395zinc finger protein 395153958160339621911Rat
3362Pnocprepronociceptin153962463539652463Rat
2324506Elp3elongator acetyltransferase complex subunit 3153975463539816482Rat
728301Anxa2-ps1annexin A2, pseudogene1153978784439789055Rat
1593317Rps17-ps14ribosomal protein S17, pseudogene 14153981949839820783Rat
1562099Nuggcnuclear GTPase, germinal center associated153982185139866122Rat
41293210LOC120097185uncharacterized LOC120097185153986632339871517Rat
1306539Scara5scavenger receptor class A, member 5153988001739985007Rat
11392146LOC108352941uncharacterized LOC108352941153996668339974105Rat
1309565PbkPDZ binding kinase154002287340034014Rat
1593313Esco2establishment of sister chromatid cohesion N-acetyltransferase 2154003456640052295Rat
1307689Ccdc25coiled-coil domain containing 25154005536840087758Rat
7749993Nop53-ps1NOP53 ribosome biogenesis factor, pseudogene 1154006667340068546Rat
1309269Scara3scavenger receptor class A, member 3154013987340172866Rat
3907Cluclusterin154016106840200315Rat
7727798Ppp2r1a-ps1protein phosphatase 2 scaffold subunit A alpha, pseudogene 1154018043640182210Rat
620701Gulogulonolactone (L-) oxidase154020567740227766Rat
7572905LOC102555773uncharacterized LOC102555773154023521640254686Rat
69299Adam2ADAM metallopeptidase domain 2154024278340284025Rat
620732Ephx2epoxide hydrolase 2154028990140327632Rat
621533Chrna2cholinergic receptor nicotinic alpha 2 subunit154034231740358601Rat
628758Ptk2bprotein tyrosine kinase 2 beta154036072240481235Rat
41225482LOC120097020uncharacterized LOC120097020154037686640380994Rat
7488975Mir6320microRNA 6320154049308840493208Rat
1564642Trim35tripartite motif-containing 35154049369740510246Rat
69349Stmn4stathmin 4154054130540559253Rat
2055Adra1aadrenoceptor alpha 1A154083012540935902Rat
11492722LOC108352934uncharacterized LOC108352934154087162040916987Rat
2517Dpysl2dihydropyrimidinase-like 2154100555141111724Rat
1307266Pnma2PNMA family member 2154111194241119649Rat
621354Bnip3lBCL2 interacting protein 3 like154117459441197730Rat
620919Ppp2r2aprotein phosphatase 2, regulatory subunit B, alpha154120465941263924Rat
7527777LOC102555410uncharacterized LOC102555410154127338141280579Rat
1593306Rpl6-ps13ribosomal protein L6, pseudogene 13154139447441395905Rat
1310805Ebf2EBF transcription factor 2154143550941634403Rat
41152583LOC120097021uncharacterized LOC120097021154169126041695519Rat
41008930LOC120097231small nucleolar RNA SNORA17154178514241785272Rat
1566135Rpl36-ps13ribosomal protein L36, pseudogene154186037541860709Rat
1311003Cdca2cell division cycle associated 2154189594641942226Rat
1312010Kctd9potassium channel tetramerization domain containing 9154194216541969862Rat
2720Gnrh1gonadotropin releasing hormone 1154197248241976690Rat
9098115LOC103693653uncharacterized LOC103693653154197291341976552Rat
1306872Dock5dedicator of cytokinesis 5154197972842158733Rat
41072884LOC12009717260S ribosomal protein L7a-like154218830742189095Rat
41400303Rps16-ps5ribosomal protein S16, pseudogene 5154228190142282434Rat
621458Neflneurofilament light chain154230192042305793Rat
2323627Slc25a3-ps1solute carrier family 25 member 3, pseudogene 1154234483742346266Rat
3160Nefmneurofilament medium chain154236044942365753Rat
9372988LOC103693868uncharacterized LOC103693868154241026042421631Rat
7607976LOC102554953uncharacterized LOC102554953154253481642558018Rat
2325104Brcc3-ps4BRCA1/BRCA2-containing complex, subunit 3, pseudogene 4154257266442573505Rat
40988049LOC120097023uncharacterized LOC120097023154262678042631143Rat
40973991LOC120097024uncharacterized LOC120097024154266206242704954Rat
62032Adam7ADAM metallopeptidase domain 7154283379642882201Rat
1309861Adamdec1ADAM-like, decysin 1154290062942923136Rat
7726377LOC102550654disintegrin and metalloproteinase domain-containing protein 28-like154294109842996816Rat
7555795LOC102550885protein SSX1-like154300099143049036Rat
2323508LOC100359732mCG20085-like154313405843134595Rat
6493460Wdr82-ps4WD repeat domain 82, pseudogene 4154336423643365095Rat
1586394Wdr82-ps3WD repeat domain 82, pseudogene 3154341167343412761Rat
1593232Rrs1-ps13ribosome biogenesis regulator 1 homolog, pseudogene 13154372661343728908Rat
1593231Septin2-ps1septin 2, pseudogene 1154376092743762362Rat
727820Adam28ADAM metallopeptidase domain 28154377446343840726Rat
7707332Rpl7a-ps3ribosomal protein L7a, pseudogene 3154407194944072745Rat
11497538LOC10835303660S ribosomal protein L7a pseudogene154424392144244711Rat
621776Stc1stanniocalcin 1154429959144311695Rat
1593230Rps17-ps4ribosomal protein S17, pseudogene 4154431935144319786Rat
1306149Nkx2-6NK2 homeobox 6154444315144447248Rat
1305369Nkx3-1NK3 homeobox 1154447385144476443Rat
41166600LOC120097025uncharacterized LOC120097025154450623444512838Rat
1359361Slc25a37solute carrier family 25 member 37154453428044576697Rat
1590801Set-ps13Set nuclear proto-oncogene, pseudogene 13154457595444604828Rat
1566115Synbsyncytin b154458081844588417Rat
41017110LOC120093073uncharacterized LOC120093073154460337744630810Rat
41206635LOC120097026uncharacterized LOC120097026154462418344629951Rat
1309511Entpd4ectonucleoside triphosphate diphosphohydrolase 4154463087344658706Rat
1308435Loxl2lysyl oxidase-like 2154468344944773067Rat
1311790R3hcc1R3H domain and coiled-coil containing 1154477455144790419Rat
1308779Chmp7charged multivesicular body protein 7154479098344806216Rat
1308041Tnfrsf10bTNF receptor superfamily member 10b154483981844867582Rat
1309924Rhobtb2Rho-related BTB domain containing 2154486825144888436Rat
9259039LOC103693695uncharacterized LOC103693695154489190444896522Rat
7630497LOC102550955uncharacterized LOC102550955154490440444907623Rat
1593295Pebp4phosphatidylethanolamine binding protein 4154492094645134188Rat
41264846LOC120097027uncharacterized LOC120097027154511305245150183Rat
2545Egr3early growth response 3154515033545156052Rat
1308253Bin3bridging integrator 3154517372545212607Rat
1309922Ccar2cell cycle and apoptosis regulator 2154521279745228001Rat
1308117C15h8orf58similar to human chromosome 8 open reading frame 58154522861545235274Rat
1359203Pdlim2PDZ and LIM domain 2154523542145250187Rat
628900Sorbs3sorbin and SH3 domain containing 3154525292145284758Rat
41167588LOC120097028uncharacterized LOC120097028154528131845325187Rat
621616Ppp3ccprotein phosphatase 3 catalytic subunit gamma154528991745362012Rat
9444731LOC103693807mitochondrial pyruvate carrier 1 pseudogene154532686545328097Rat
1307026Slc39a14solute carrier family 39 member 14154537680645423549Rat
1306964Piwil2piwi-like RNA-mediated gene silencing 2154543140245498034Rat
40979616LOC120097029uncharacterized LOC120097029154543822645458584Rat
1596002Hdac1-ps13Histone deacetylase 1, pseudogene 13154544144345443251Rat
40950856LOC120097212small nucleolar RNA SNORA70154549140645491496Rat
41262530Trnap-agg23transfer RNA proline (anticodon AGG) 23154550234045502412Rat
1311816Polr3dRNA polymerase III subunit D154551158745516256Rat
2325539Mir320amicroRNA 320a154551639245516473Rat
41291261LOC120097030uncharacterized LOC120097030154553294545534370Rat
1305790Phyhipphytanoyl-CoA 2-hydroxylase interacting protein154553397445545223Rat
620739Bmp1bone morphogenetic protein 1154555160345595862Rat
3666Sftpcsurfactant protein C154559656545599615Rat
1311079Lgi3leucine-rich repeat LGI family, member 3154560561145612739Rat
1306561Reep4receptor accessory protein 4154562031745623524Rat
620634HrHR, lysine demethylase and nuclear receptor corepressor154562683545646313Rat
1311802Nudt18nudix hydrolase 18154565059745653985Rat
1308870Fhip2bFHF complex subunit HOOK interacting protein 2B154565664145674603Rat
1311419Dmtndematin actin binding protein154567797445705601Rat
2607Fgf17fibroblast growth factor 17154571190145717063Rat
727816Npm2nucleophosmin/nucleoplasmin 2154572249445729246Rat
1310928Xpo7exportin 7154574205345828050Rat
1310966Dok2docking protein 2154582698445841409Rat
61809Gfra2GDNF family receptor alpha 2154594184146033715Rat
41365565LOC12009699160S ribosomal protein L31-like154609440746097323Rat
1592172Dpm3-ps1dolichyl-phosphate mannosyltransferase polypeptide 3, pseudogene 1154620272046203083Rat
41099915LOC120097031uncharacterized LOC120097031154632591046346326Rat
9310814LOC103693704NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial pseudogene154653606246536379Rat
7571001LOC102552533uncharacterized LOC102552533154658393146598119Rat
41005955LOC120097229small nucleolar RNA SNORA48154722891747229062Rat
41197065LOC120097234U1 spliceosomal RNA154726368547263816Rat
7556177LOC102554416uncharacterized LOC102554416154729087447293379Rat
7689627LOC102554611uncharacterized LOC102554611154756270447588473Rat
41045961LOC120097175uncharacterized LOC120097175154763200747636835Rat
1304736Fndc3afibronectin type III domain containing 3a154768990947867354Rat
41254752LOC120097032uncharacterized LOC120097032154781997547840863Rat
9466191Chchd2l2-ps5coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 5154787600447896992Rat
41091694LOC120097033uncharacterized LOC120097033154794046147943746Rat
41214497LOC120097034uncharacterized LOC120097034154798377547986574Rat
1592074Slc25a5-ps4solute carrier family 25 member 5, pseudogene 4154809047548091756Rat
619797Cysltr2cysteinyl leukotriene receptor 2154819025148229906Rat
41176152LOC120097279U2 spliceosomal RNA154821779648217998Rat
41014666Mrpl40-ps2mitochondrial ribosomal protein L40, pseudogene 2154824974248251960Rat
735048Rcbtb2RCC1 and BTB domain containing protein 2154831980948364441Rat
41274953LOC120097036uncharacterized LOC120097036154832664748330592Rat
3540Rb1RB transcriptional corepressor 1154837129548502473Rat
1595950Lpar6lysophosphatidic acid receptor 6154841654848418357Rat
620727Itm2bintegral membrane protein 2B154854599848568904Rat
2322692Tyw5-ps1tRNA-yW synthesizing protein 5, pseudogene 1154864156848675592Rat
1306671Med4mediator complex subunit 4154869654248706818Rat
1308292Nudt15nudix hydrolase 15154870777648747363Rat
11396216Trnae-uuc6transfer RNA glutamic acid (anticodon UUC) 6154875155848751629Rat
1309397Sucla2succinate-CoA ligase ADP-forming subunit beta154875235648805495Rat
41332447LOC120097289U4 spliceosomal RNA154880877648808965Rat
7688592LOC102547539uncharacterized LOC102547539154900298549005197Rat
41019314LOC120097037uncharacterized LOC120097037154955623949571826Rat
41336942LOC120097038uncharacterized LOC120097038154963351949645203Rat
41188357Rpl13a-ps7ribosomal protein L13A, pseudogene 7154975736749758024Rat
7599070LOC102546539uncharacterized LOC102546539154983625449851944Rat
61800Htr2a5-hydroxytryptamine receptor 2A154995003550022188Rat
1592114Esdesterase D155004363450063134Rat
1595678Lrch1leucine rich repeats and calponin homology domain containing 1155007060550249724Rat
11356954LOC108352942uncharacterized LOC108352942155033048850348165Rat
1304929Rubcnlrubicon like autophagy enhancer155033245850377494Rat
1559507Lrrc63leucine rich repeat containing 63155040019950437321Rat
1308288Lcp1lymphocyte cytosolic protein 1155044330050544682Rat
41247556LOC120097039uncharacterized LOC120097039155044361550464475Rat
1310303Esco2-ps2establishment of cohesion 1 homolog 2 (S. cerevisiae), pseudogene 2155045229150455762Rat
71035Cpb2carboxypeptidase B2155055772250606569Rat
41365366Trmt10a-ps1tRNA methyltransferase 10A, pseudogene 1155055783250569751Rat
41046054LOC120097303U6 spliceosomal RNA155058497450585080Rat
1307729Zc3h13zinc finger CCCH type containing 13155060733550671802Rat
1592168Siah3siah E3 ubiquitin protein ligase family member 3155077096350834278Rat
41398796LOC120097040uncharacterized LOC120097040155082147550844771Rat
1561044Cby2chibby family member 2155090943551004449Rat
41042581LOC120097041uncharacterized LOC120097041155095973950975200Rat
6491099Erich6bglutamate-rich 6B155097906651014394Rat
1592167Gabarapl2-ps2GABA type A receptor associated protein like 2, pseudogene 2155098554950986428Rat
1304555Cog3component of oligomeric golgi complex 3155102080851071288Rat
1359702Slc25a30solute carrier family 25, member 30155107699851099613Rat
7699265LOC102552389uncharacterized LOC102552389155114431451149510Rat
621623Tpt1tumor protein, translationally-controlled 1155115672851159629Rat
41070333Snora31small nucleolar RNA, H/ACA box 31155115922051159349Rat
41285695LOC120097042uncharacterized LOC120097042155115955151169131Rat
7695025LOC102549099uncharacterized LOC102549099155117522651192638Rat
40992298LOC12009704340S ribosomal protein S29-like155119379451199210Rat
620772Gtf2f2general transcription factor IIF subunit 2155120602751327166Rat
1594637Kctd4potassium channel tetramerization domain containing 4155126366451278030Rat
40942556LOC120097218small nucleolar RNA SNORA5155128408451284223Rat
40964313LOC120097044uncharacterized LOC120097044155135805951361504Rat
9082307LOC103690313uncharacterized LOC103690313155135980051362026Rat
9142262LOC103693717uncharacterized LOC103693717155139785351408059Rat
40996552LOC120097046uncharacterized LOC120097046155140780651408246Rat
1307254Gpalpp1GPALPP motifs containing 1155141188351429435Rat
41169285Ran-ps6RAN, member RAS oncogene family, pseudogene 6155141578451416614Rat
1359440Nufip1nuclear FMR1 interacting protein 1155142951851460308Rat
9173655Hmga1-ps3high mobility group AT-hook 1, pseudogene 3155146046051463125Rat
11450795Trnae-uuc7transfer RNA glutamic acid (anticodon UUC) 7155148538351485454Rat
41109740LOC120097047uncharacterized LOC120097047155149876151512101Rat
11484738LOC108352943uncharacterized LOC108352943155153676051563422Rat
40931825LOC120097110uncharacterized LOC120097110155154480951545331Rat
41059337LOC120097108uncharacterized LOC120097108155154586951566802Rat
41148120LOC120097109uncharacterized LOC120097109155156630551571272Rat
41309137Rps29-ps6ribosomal protein S29, pseudogene 6155167644851680099Rat
11391647LOC108352944uncharacterized LOC108352944155171709651730024Rat
3850Tsc22d1TSC22 domain family, member 1155175048951850958Rat
41059573LOC120097112uncharacterized LOC120097112155180841851822530Rat
11436928LOC108352945uncharacterized LOC108352945155186004751862572Rat
41154596LOC120097113uncharacterized LOC120097113155186311051868135Rat
1566076Serp2stress-associated endoplasmic reticulum protein family member 2155187988451903965Rat
41348002LOC120097114uncharacterized LOC120097114155190418951909465Rat
7631267LOC102556319uncharacterized LOC102556319155191597951929359Rat
9094045LOC103693719uncharacterized LOC103693719155201892052027569Rat
11507603LOC108352946uncharacterized LOC108352946155210784852112526Rat
7700048LOC102546462uncharacterized LOC102546462155217781152273499Rat
1310185Lacc1laccase domain containing 1155239026752407630Rat
2321506Ccdc122coiled-coil domain containing 122155240780652470050Rat
41029888LOC120097048uncharacterized LOC120097048155249305052501340Rat
1306118Enox1ecto-NOX disulfide-thiol exchanger 1155251783353079752Rat
41087576Rps15-ps5ribosomal protein S15, pseudogene 5155262460752625235Rat
40986166Trnap-ugg7transfer RNA proline (anticodon UGG) 7155272918152729261Rat
40939906LOC120097116uncharacterized LOC120097116155283995052863424Rat
41101550LOC120097117uncharacterized LOC120097117155295910952960850Rat
1307154Dnajc15DnaJ heat shock protein family (Hsp40) member C15155318206053249675Rat
1563207Epsti1epithelial stromal interaction 1155328396453382192Rat
1560137Fam216bfamily with sequence similarity 216, member B155348924353496717Rat
620784Tnfsf11TNF superfamily member 11155367499053705171Rat
7661800LOC102549816uncharacterized LOC102549816155386129753864972Rat
2079Akap11A-kinase anchoring protein 11155391163553956138Rat
41164845LOC120097049uncharacterized LOC120097049155395618653960792Rat
1561955Dgkhdiacylglycerol kinase, eta155398107954150470Rat
41112163Eif5b-ps2eukaryotic translation initiation factor 5B, pseudogene 2155414997054151117Rat
11447237LOC108353040uncharacterized LOC108353040155423194754235599Rat
1308772Vwa8von Willebrand factor A domain containing 8155425270354576871Rat
41277989LOC120097120uncharacterized LOC120097120155426877054269387Rat
41000723LOC120097121uncharacterized LOC120097121155428709854296675Rat
41003131Hars1-ps1histidyl-tRNA synthetase 1, pseudogene 1155440661954416048Rat
619721Rgccregulator of cell cycle155466248354675320Rat
6501536Glul-ps1glutamate-ammonia ligase, pseudogene 1155470241154704851Rat
1584324Naa16N(alpha)-acetyltransferase 16, NatA auxiliary subunit155471162054770915Rat
41033512LOC120097256U2 spliceosomal RNA155477002654770188Rat
1584329Mtrf1mitochondrial translation release factor 1155477688554804699Rat
6501695Kbtbd7kelch repeat and BTB domain containing 7155480687854811457Rat
1584320Rps24-ps14ribosomal protein S24, pseudogene 14155481614854816642Rat
6501416Rpl15-ps1ribosomal protein L15, pseudogene 1155482252954823866Rat
1305086Kbtbd6kelch repeat and BTB domain containing 6155484828554850042Rat
620033Wbp4WW domain binding protein 4155486270054890668Rat
620697Elf1E74 like ETS transcription factor 1155489064454986721Rat
11379973Trnae-uuc8transfer RNA glutamic acid (anticodon UUC) 8155489080954890880Rat
1307550Sugt1SGT1 homolog, MIS12 kinetochore complex assembly cochaperone155499141955032244Rat
620176Cnmdchondromodulin155504154855066297Rat
2325470Mir759microRNA 759155514202255142118Rat
69350Pcdh8protocadherin 8155519847555203021Rat
11434381LOC108352947uncharacterized LOC108352947155520341055274301Rat
1311708Olfm4olfactomedin 4155538510055429687Rat
1564564LOC306079similar to RIKEN cDNA 3100001N19155552033255531842Rat
41311605LOC120097184uncharacterized LOC120097184155567877955691531Rat
1592157Cyp2c6_v1-ps6cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1, pseudogene 6155684739456863597Rat
9685073Mir1297microRNA 1297155684843056848503Rat
1592156Sord-ps6sorbitol dehydrogenase, pseudogene 6155712815857129211Rat
2320681LOC10036118040S ribosomal protein S17-like155717842557179006Rat
11436659LOC108353006ATP synthase subunit d, mitochondrial pseudogene155721053057211782Rat
7672387LOC102554138uncharacterized LOC102554138155806456458084413Rat
1597679Calm2-ps2calmodulin 2, pseudogene 2155811060058111718Rat
9466192LOC103693740cytochrome b-c1 complex subunit 7 pseudogene155875934358759666Rat
41086981LOC120097308U6 spliceosomal RNA155884001758840119Rat
40958512LOC120097052uncharacterized LOC120097052155889457659015688Rat
41080237Tmem167a-ps1transmembrane protein 167A, pseudogene 1155894679058952210Rat
41262856LOC120097242small nucleolar RNA SNORA17155906759759067728Rat
40975150LOC120097286small nucleolar RNA U3155954783759548029Rat
9205700LOC103693880uncharacterized LOC103693880156019854560221983Rat
1304753Pcdh17protocadherin 17156022208860316172Rat
11379167LOC108352949uncharacterized LOC108352949156023615860255653Rat
41315464LOC120097053uncharacterized LOC120097053156138063461394655Rat
40989554LOC120097194U6 spliceosomal RNA156219208462192173Rat
41271476LOC120097313U1 spliceosomal RNA156228193762282097Rat
1593287Diaph3diaphanous-related formin 3156254337563013060Rat
41002785Trnav-aac40transfer RNA valine (anticodon AAC) 40156270754162707622Rat
41189376LOC120097230small nucleolar RNA SNORA48156305046163050601Rat
41127910Atp5mj-ps2ATP synthase membrane subunit j, pseudogene 2156320208063202497Rat
2320163Mfap1a-ps2microfibrillar-associated protein 1A, pseudogene 2156327575063276346Rat
1310126Tdrd3tudor domain containing 3156334053163497208Rat
41326155LOC120097228small nucleolar RNA SNORA48156366873363668876Rat
41026458LOC120097310U6 spliceosomal RNA156374503163745137Rat
41096054LOC120093128uncharacterized LOC120093128156393710263941299Rat
6496491Rpsa-ps1ribosomal protein SA, pseudogene 1156394891363949900Rat
41381972Tubal-ps1tubulin, alpha like, pseudogene 1156407140364072451Rat
1592113Pkm-ps18pyruvate kinase M1/2, pseudogene 18156431995864321551Rat
1306297Pcdh20protocadherin 20156442553464431790Rat
9333309LOC103693748uncharacterized LOC103693748156458992964832650Rat
2320118Mtfr2-ps1mitochondrial fission regulator 2, pseudogene 1156542691565427910Rat
41365783LOC120097247small nucleolar RNA SNORA17156575091865751049Rat
1592151Phgdh-ps4phosphoglycerate dehydrogenase, pseudogene 4156580583465807366Rat
40959529LOC120097187uncharacterized LOC120097187156649888566520540Rat
41226654LOC120097232small nucleolar RNA SNORA17156651097266511103Rat
7552264LOC102547864uncharacterized LOC102547864156655133366593853Rat
41325790LOC120097252small nucleolar RNA SNORA17156655180666551936Rat
41300597LOC120097055uncharacterized LOC120097055156664332566653880Rat
40983884LOC120097054uncharacterized LOC120097054156665172066661831Rat
7554821Envl-ps1MLV-related proviral Env polyprotein-like, pseudogene 1156673717466757250Rat
7651565LOC102546653uncharacterized LOC102546653156686439666876742Rat
41079966LOC120097254small nucleolar RNA SNORA17156728878167288910Rat
2319690Cdk4-ps1cyclin-dependent kinase 4, pseudogene 1156737104667371603Rat
1595677Nono-ps9non-POU domain containing, octamer-binding, pseudogene 9156738764167435806Rat
41018907LOC120097188uncharacterized LOC120097188156747758567491791Rat
1590791LOC498555similar to 60S acidic ribosomal protein P2156763836567638804Rat
40995928LOC120097056uncharacterized LOC120097056156786285767953489Rat
41023740LOC120097057uncharacterized LOC120097057156848083468606048Rat
41287184LOC120097257small nucleolar RNA SNORA17156867010768670234Rat
41204718LOC120097281U2 spliceosomal RNA156877186068772017Rat
1306348Pcdh9protocadherin 9156934010870237531Rat
41027949LOC120097302U1 spliceosomal RNA156946362569463786Rat
41051620LOC120097140uncharacterized LOC120097140156950797869538198Rat
40957543LOC120097141uncharacterized LOC120097141156968199469719442Rat
41257981LOC120097142uncharacterized LOC120097142156999016870006898Rat
1595676Vdac1-ps13voltage-dependent anion channel 1, pseudogene 13157047334670479101Rat
41023963Snrk-ps1SNF related kinase, pseudogene 1157078688370789325Rat
41251075LOC120097271small nucleolar RNA SNORA17157083639770836536Rat
11410099LOC108353042uncharacterized LOC108353042157086763970872983Rat
1592146Ngrn-ps3neugrin, neurite outgrowth associated, pseudogene 3157145020371453611Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10672D15Mgh12136154197160441971702Ratregion
11235D15Wox6154603246746032688Ratregion
34094D15Mit8150155339471153394861Ratregion
34353D15Mgh2141155053179750531936Ratregion
34471D15Mgh3149155559495855596089Ratregion
34471D15Mgh3149155559593955596089Ratregion
34619D15Mgh11142154475939144759533Ratregion
11456D15Wox2200154019323640193417Ratregion
35991D15Rat10176153767873737678924Ratregion
36013D15Rat34162154585258545852747Ratregion
36061D15Rat13172153869256638692741Ratregion
36189D15Rat17178153983878339838985Ratregion
36293D15Rat35146154222207442222220Ratregion
37206D15Rat56101154418755044187649Ratregion
37276D15Rat68132155648442056484560Ratregion
35362D15Rat19170155079449450794652Ratregion
35455D15Rat20151155281302852813179Ratregion
36880D15Rat15175154164721641647391Ratregion
37192D15Rat133200154980576549805981Ratregion
37196D15Rat132144153981385039814006Ratregion
37620D15Rat74176155260878152608962Ratregion
37666D15Rat64108153784120437841316Ratregion
37696D15Rat59208155796459157964817Ratregion
37794D15Rat48200155530190755302115Ratregion
37918D15Rat39236155531575355315995Ratregion
37954D15Rat61134154411472844114864Ratregion
36594D15Rat7172153625153336251705Ratregion
36663D15Rat21159156832716568327360Ratregion
36697D15Rat8212153713993637140182Ratregion
34805D15Rat32102154930847949308583Ratregion
34910D15Rat14156154063126840631412Ratregion
35090D15Rat9149153744932837449480Ratregion
35611D15Rat11131154618729146187442Ratregion
35661D15Rat33125154579421645794341Ratregion
35737D15Rat12158153969051039690668Ratregion
35757D15Rat16141154775071447750839Ratregion
38030D15Rat43201154023952240239701Ratregion
38128D15Rat72154154031064040310754Ratregion
40554D15Rat93173155655405456554225Ratregion
40606D15Rat122171155078213050782301Ratregion
40674D15Rat86238153492451034924750Ratregion
40084D15Rat117169153361105833611227Ratregion
38846D15Rat46207155020925750209472Ratregion
39192D15Rat47200156644312766443335Ratregion
39404D15Rat91200153895761638957816Ratregion
39458D15Rat95209156318067563180884Ratregion
39490D15Rat112143154461786244618004Ratregion
41926D15Rat37160155365631153656471Ratregion
42006D15Arb2219156099046860990698Ratregion
42008D15Arb4147153842879438428941Ratregion
42008D15Arb4147153842879438429422Ratregion
42012D15Arb6234154197156041971801Ratregion
41332D15Rat94171156962579369625966Ratregion
43044D15Rat119234153763198337632195Ratregion
43046D15Rat149247153760446137604696Ratregion
43047D15Rat120117153991923739919348Ratregion
43048D15Rat143148153988976039889901Ratregion
43049D15Rat144241154015944240159783Ratregion
43050D15Rat147238154015944240159780Ratregion
43051D15Rat146205155081975550819957Ratregion
43052D15Rat148114155122942151229521Ratregion
42404D15Rat171104153506335335063457Ratregion
42405D15Rat164202154240210642402305Ratregion
42406D15Rat165125155317701353177138Ratregion
40882D15Rat97224157147706771477291Ratregion
41010D15Rat96157156520576265205939Ratregion
41114D15Rat89224154692122346921453Ratregion
41636D15Rat123133155284790852848045Ratregion
41708D15Rat125135156272548662725621Ratregion
44552D9Wox21136154929577549295829Ratregion
44552D9Wox21136156641797866418033Ratregion
45595D18Got3281157126847471270091Ratregion
60117D15Got70156155545954655459704Ratregion
60118D15Got73139155492565854925797Ratregion
60087D15Got110205154785466947854874Ratregion
60091D15Got23105153413130934131411Ratregion
45243D15Got33120153480350534803622Ratregion
45244D15Got31189153597531635975505Ratregion
45257D15Got35133153370640833706541Ratregion
45259D15Got37134153605240336052537Ratregion
45262D15Got38173153649465436494827Ratregion
45263D15Got43164153866827838668448Ratregion
45264D15Got44225153853673238536957Ratregion
45265D15Got47161153991917539919335Ratregion
45266D15Got48214153973427039734484Ratregion
45267D15Got46266154128623041286492Ratregion
45268D15Got51225154063348740633712Ratregion
45269D15Wox3123154035397740354096Ratregion
45270D15Got50252154088782040888072Ratregion
45271D15Got49159154108101141081170Ratregion
45273D15Got111135155702911457029249Ratregion
45274D15Got72205155959517159595382Ratregion
45275D15Got60197155080401550804211Ratregion
625835D15Got115200155280070052800900Ratregion
629593D15Hmgc1115153533710135337216Ratregion
60098D15Got40159153543735835437517Ratregion
60101D15Got53148154429930744299450Ratregion
60102D15Got54281154417997244180253Ratregion
60103D15Got55208154445381444454022Ratregion
60104D15Got56254154479651144796765Ratregion
60106D15Got58152154660284846603000Ratregion
60107D15Got59203154916778849167991Ratregion
60108D15Got61246155257993952580185Ratregion
60109D15Got62210155185289351853103Ratregion
60111D15Got64164155316034553160509Ratregion
60112D15Got65107155442203854422145Ratregion
60113D15Got66176155401940354019579Ratregion
60114D15Got67122155388807053888192Ratregion
60115D15Got68279155516674955167027Ratregion
60116D15Got69210155572901155729221Ratregion
62444D15Uia2128154059319740593324Ratregion
62451D15Uia4178155554945555549633Ratregion
66544D15Mco14170153487584434876020Ratregion
66545D15Mco15168155656425156564417Ratregion
66640D15Mco5223154437024644370459Ratregion
66644D15Mco7170154005357640053755Ratregion
67268D15Arb7219154475931244759531Ratregion
1630632D15Got219138155361083053610968Ratregion
1631578D15Got231171156646680366466974Ratregion
1631609D15Uwm1156154101087941011035Ratregion
1631763D15Got206123155495323354953351Ratregion
1631895D15Got229141154533378745333928Ratregion
1632295D15Wox8277154018528540185562Ratregion
1578970D10Chm51170153609001236090068Ratregion
1627753D15Got212172156794251067942682Ratregion
1628345D15Got233178156373476563734943Ratregion
1628726D15Got209163156669903966699202Ratregion
1629296D15Got210117156644314366443260Ratregion
1629889D15Got22296156409889464098985Ratregion
1640782D15Got243144156251061362510752Ratregion
1641695D15Got247188156205529562055483Ratregion
1640020D15Got244191153715698937157182Ratregion
1640756D15Wox4202154475932944759531Ratregion
1635017D15Got225267156259464162594908Ratregion
1635632D15Got21177156954542869545505Ratregion
1635969D15Got109167154561881145618979Ratregion
1636394D15Wox14269154429960144299870Ratregion
1637081D15Got227215153864584538646060Ratregion
1637180D15Got218182154948864149488817Ratregion
1637264D15Got208263156638915366389411Ratregion
1633890D15Got204145155492847454928621Ratregion
1634372D15Got230142153982459439824738Ratregion
1634547D15Uia10237153571897335719210Ratregion
7205958Fam123a63153452717334527236Ratregion
7192202Gata41209153746398737465196Ratregion
7192222D15Mgh3149155559495755596089Ratregion
7192222D15Mgh3149155559593855596089Ratregion
7192344Gata4186153746110137462231Ratregion
5038784RH127330196153741118137411377Ratregion
5036071Adam2186154024271240242898Ratregion
5038840RH127363186155471277554713464Ratregion
5038878RH127385200157145368971453882Ratregion
7206382fj36f03.x10154514402945145335Ratregion
7206534UniSTS:546922999156934024769341246Ratregion
7206748ha24360156538923565389920Ratregion
5036279Egr5-rs191155185044751850638Ratregion
5036336Hars129155441532054415449Ratregion
5036428Nfm221154236080742361028Ratregion
5039102RH127513215156763852467638739Ratregion
5039102RH127513215156763852467638739Ratregion
5036573AU048473163155616290656162948Ratregion
5036887AU049518237155463547254635711Ratregion
5037005AU049892298156862226168622559Ratregion
5035542Mrpl400154824976148250175Ratregion
5035649RH45841138156934041069340548Ratregion
5031282PMC125376P1222154236045742360679Ratregion
5025964RH130377196153942157739421773Ratregion
5028627RH124140158154476667344767926Ratregion
5028709RH18022211154431133244311543Ratregion
5026258RH131524194153762677137626965Ratregion
5026262RH131539182153437954534379727Ratregion
5028869RH142637122154856403348564155Ratregion
5031670AU047541219156620524666205458Ratregion
5034331AI548197192154092297740923169Ratregion
5031696AU047454131156734444167344572Ratregion
5031730AU047341186153587281035872996Ratregion
5034392WI-9274117154885552548855642Ratregion
5029099RH143518275155441406454414339Ratregion
5029159RH143738142153560477935604922Ratregion
5026602RH132838218155007804050078258Ratregion
5029293RH144249100155127786851277968Ratregion
5029327RH144377278154129981341300091Ratregion
5029456D15Rat87159153391177133911930Ratregion
5032197RH126495232153928461739284849Ratregion
5032231U58889111154525337745253488Ratregion
5029707BE096152169155240633152406500Ratregion
5029729BE102165149156989884869898997Ratregion
5029741BE102295207153514815835148365Ratregion
5029831BI278614169154555181745551986Ratregion
5032545WI-18898142154120478741204929Ratregion
5032627RH134704217155457655254576824Ratregion
5034982Chrna2292154035687640357168Ratregion
5035292AI102486152154051000340510155Ratregion
5027477AW04987096154554489945544995Ratregion
5027479AW31965586155107827451078360Ratregion
5033015RH137283212156254343062543642Ratregion
5027641AU016692145154522895545229100Ratregion
5030283BE111829183154019106040191243Ratregion
5027821RH94875227154837269648372923Ratregion
5025392RH128138186154036002040360206Ratregion
502791330.MMHAP14FRB12.seq108153997624439976352Ratregion
5033391RH138668202153941322039413422Ratregion
5025486RH128506187153741222437412411Ratregion
5028165D14Mit157108154183391441834022Ratregion
5030809BE120275174154047645240476626Ratregion
5030827BE120472164153446172334461887Ratregion
5033613RH139464194153703339237033586Ratregion
5033613RH139464194155067137950671573Ratregion
5033615RH139472208153685472436854932Ratregion
5033659RH139634180153998463739984817Ratregion
5025758RH129548182153445755334457735Ratregion
5031031BE121260161153906349239063653Ratregion
5025812RH129773152155445338854453540Ratregion
5028561MHAa29c11.seq194153632719936327393Ratregion
5031057BE115404159153945084839451007Ratregion
5051949RH94752169154559795545598125Ratregion
5055155RH143637145154567612345676268Ratregion
5051146RH134466180155140937251409551Ratregion
5056095RH144180192153744476937444961Ratregion
5056247RH144268104153809038038090484Ratregion
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5086711BM386690213155557699155577204Ratregion
5086717BE106576157153544050935440666Ratregion
5081821BI273777113155054355250543665Ratregion
5503048Fzd3160153946475839464918Ratregion
5503216UniSTS:237223210154522869045228901Ratregion
5503218UniSTS:237232198156254346062543658Ratregion
5503400D17S1860655154513385945134514Ratregion
5503656Nefl440154230468642305660Ratregion
5503662UniSTS:465485335154236080442361139Ratregion
5504036px-39f10692156719200967192701Ratregion
5504066px-59g3108156430592064306028Ratregion
5504284D20S527E163154574212945742292Ratregion
5504354D13S663E98153553822835538326Ratregion
5505083Sftpc113154559786645598233Ratregion
5505056Fgf17200154571207145712271Ratregion
5505302Ppp2r2a153154121088441211037Ratregion
5504879ha29890154482489344825977Ratregion
5504975Gata4146153746108837462178Ratregion
5505136Clu116154019881740199676Ratregion
5505893UniSTS:49600598154035628040356378Ratregion
5506045UniSTS:498231402154163211341632515Ratregion
5506358UniSTS:478958303153995085439951157Ratregion
5506747G45129236154995842849958664Ratregion
5506845G46467139154892661848926759Ratregion
5506785G45372202156222617862226380Ratregion
5501151PMC15073P3300154230464142305475Ratregion
5500228AW53853785154003331640033401Ratregion
5502571RH12540599153509042035090519Ratregion
5501025PMC123165P1506154083216240832668Ratregion
5501097PMC134715P392154163168541631777Ratregion
5501157PMC150908P476154083287840832954Ratregion
5501914MARC_17376-17377:1021902296:2116154574481745746323Ratregion
5502196MARC_8253-8254:996688461:1385155143302051433420Ratregion
5502774LOC144997109156031399760314106Ratregion
5502513RH12512793154006720540067298Ratregion
5502541RH125214159154055906440559223Ratregion
Position Markers

Flank 1: (D15Rat117)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21533,611,058 - 33,611,227 (+)MAPPER
Rnor_6.01539,749,557 - 39,749,725NCBI
Rnor_5.01543,570,947 - 43,571,115UniSTS
RGSC_v3.41538,542,355 - 38,542,760RGD
RGSC_v3.41538,542,534 - 38,542,702UniSTS
RGSC_v3.11538,558,234 - 38,558,402RGD
Celera1533,317,589 - 33,317,757UniSTS
RH 3.4 Map15230.1UniSTS
RH 3.4 Map15230.1RGD
SHRSP x BN Map1527.8098UniSTS
SHRSP x BN Map1527.8098RGD
Peak: (D15Rat117)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21533,611,058 - 33,611,227 (+)MAPPER
Rnor_6.01539,749,557 - 39,749,725NCBI
Rnor_5.01543,570,947 - 43,571,115UniSTS
RGSC_v3.41538,542,355 - 38,542,760RGD
RGSC_v3.41538,542,534 - 38,542,702UniSTS
RGSC_v3.11538,558,234 - 38,558,402RGD
Celera1533,317,589 - 33,317,757UniSTS
RH 3.4 Map15230.1UniSTS
RH 3.4 Map15230.1RGD
SHRSP x BN Map1527.8098UniSTS
SHRSP x BN Map1527.8098RGD
Flank 2: (D15Rat97)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21571,477,067 - 71,477,291 (+)MAPPER
Rnor_6.01579,033,484 - 79,033,707NCBI
Rnor_5.01582,573,157 - 82,573,380UniSTS
RGSC_v3.41578,048,029 - 78,048,493RGD
RGSC_v3.41578,048,256 - 78,048,479UniSTS
RGSC_v3.11578,063,809 - 78,064,273RGD
SHRSP x BN Map1541.3598RGD
SHRSP x BN Map1541.3598UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154028990149308583Rat
2306968Anxrr23Anxiety related response QTL 234.83reflex trait (VT:0001961)amplitude of the acoustic startle response (CMO:0001520)154063126846187442Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)156099046873690657Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
724548Niddm55Non-insulin dependent diabetes mellitus QTL 550.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)156832736073699069Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the midshaft and distal region and measurements taken from pQCT images 2293456
qtl_general software package: MAPMAKER/EXP 2293456
qtl_general allele: DA alleles cause stronger skeletal structure and strength 2293456
qtl_statistics_details LOD of 6.6 was recorded for males 2293456