Bmd28 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd28 (Bone mineral density QTL 28) Rattus norvegicus

Symbol: Bmd28
Name: Bone mineral density QTL 28
RGD ID: 2293664
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: trabecular volumetric bone mineral density   (CMO:0001729)    
LOD Score: 5.1
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2174,354,487 - 27,028,127RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0174,716,067 - 27,691,136RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0176,945,553 - 29,605,354RGDRnor5.0
RGSC_v3.41710,044,240 - 33,277,509RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific Genetic Loci for Femoral Neck Bone Mass and Strength Identified in Inbred COP and DA Rats. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2532Edn1endothelin 1172245492422460812Rat
3708Slc34a1solute carrier family 34 member 11792188769233852Rat
2612Fgfr4fibroblast growth factor receptor 41794615419476268Rat
70885Dbn1drebrin 11791506089164982Rat
2214Bmp6bone morphogenetic protein 6172631812126469034Rat
69253Pitx1paired-like homeodomain 11787941348800292Rat
620003Rgs14regulator of G-protein signaling 141792489829263104Rat
70980Gmprguanosine monophosphate reductase171915182019189626Rat
2798Hk3hexokinase 31795969509614847Rat
70945Cplx2complexin 2171021957710292835Rat
2831Hrh2histamine receptor H 2171036835510407791Rat
620049Il9interleukin 91781117728114895Rat
69297Camlgcalcium modulating ligand1789926979003576Rat
3036Makmale germ cell-associated kinase172368367423731125Rat
3624Atxn1ataxin 1171873749119142360Rat
71058Hnrnpkheterogeneous nuclear ribonucleoprotein K1762629366275001Rat
3213Ntrk2neurotrophic receptor tyrosine kinase 21755589925870299Rat
3796Sykspleen associated tyrosine kinase171260461512678437Rat
628769Pdlim7PDZ and LIM domain 71791245659139814Rat
621022Iars1isoleucyl-tRNA synthetase 1171494091914987277Rat
3179Ninj1ninjurin 1171545280415461684Rat
628820Trpc7transient receptor potential cation channel, subfamily C, member 71777089117833435Rat
727847Hivep1HIVEP zinc finger 1172258501622714517Rat
621692Tmem14ctransmembrane protein 14C172373376923739906Rat
621353Cltbclathrin, light chain B171000151210019201Rat
620972Nfil3nuclear factor, interleukin 3 regulated171228049912295728Rat
621755Unc5aunc-5 netrin receptor A1796148419670558Rat
708480Ddx46DEAD-box helicase 461789441978988476Rat
620158Smad5SMAD family member 51778623327891678Rat
621462Macroh2a1macroH2A.1 histone1784793318542071Rat
727792Isca1iron-sulfur cluster assembly 11749052914917955Rat
620745Ubqln1ubiquilin 11764390026477096Rat
620310Cap2cyclase associated actin cytoskeleton regulatory protein 2171805423418203453Rat
3167Neurog1neurogenin 11783628788364397Rat
620991Secisbp2SECIS binding protein 2171353851313569573Rat
621224Slc28a3solute carrier family 28 member 31760625636112965Rat
621071Kif27kinesin family member 271762995446375106Rat
621771Naa35N(alpha)-acetyltransferase 35, NatC auxiliary subunit1750343605086456Rat
2518Drd1dopamine receptor D1171054044010544971Rat
69348Shc3SHC adaptor protein 3171365224713772710Rat
631428Id4inhibitor of DNA binding 4171638938716391956Rat
1303246DekDEK proto-oncogene171758080417602825Rat
628624Mxd3Max dimerization protein 31793014309305156Rat
70992Sncbsynuclein, beta1798468029855013Rat
1303198Gcnt2glucosaminyl (N-acetyl) transferase 2172379685923901625Rat
1303198Gcnt2glucosaminyl (N-acetyl) transferase 2172386660223868691Rat
621818Omdosteomodulin171506021715068441Rat
61986Grk6G protein-coupled receptor kinase 61791770189192644Rat
1303298Arl10ADP-ribosylation factor like GTPase 10171003020910038664Rat
3116Msx2msh homeobox 2171109721411102879Rat
3216Nup153nucleoporin 153171797221718024876Rat
1305580Diras2DIRAS family GTPase 2171273004012761511Rat
1304696Txndc15thioredoxin domain containing 151788980748910538Rat
735081Nhlrc1NHL repeat containing E3 ubiquitin protein ligase 1171767437517675565Rat
1305555Fbxl21F-box and leucine-rich repeat protein 211780604128077415Rat
1305700Catsper3cation channel, sperm associated 31788101228840881Rat
1305761Mylipmyosin regulatory light chain interacting protein171928664919308295Rat
1306276Nedd9neural precursor cell expressed, developmentally down-regulated 9172328979323468026Rat
1306058Card19caspase recruitment domain family, member 19171543257215445318Rat
1307748Nsd1nuclear receptor binding SET domain protein 11793119639426373Rat
1308856Rnf144bring finger protein 144B171743127117580687Rat
1307009Uimc1ubiquitin interaction motif containing 11795237939592810Rat
1304631Zfp169zinc finger protein 169171613920416167242Rat
1307406Cxcl14C-X-C motif chemokine ligand 141783179338325956Rat
1306102Cage1cancer antigen 1172678997526828210Rat
1306643Fam120afamily with sequence similarity 120A171568423315774964Rat
1306086Riok1RIO kinase 1172676744026789900Rat
1306087AuhAU RNA binding methylglutaconyl-CoA hydratase171232952212424896Rat
1307212Rnf44ring finger protein 441799199829934376Rat
1305727Nop16NOP16 nucleolar protein171002295010027867Rat
1306577Faf2Fas associated factor family member 21799472169989474Rat
620017Tgfbitransforming growth factor, beta induced1779556037984903Rat
1306307Agtpbp1ATP/GTP binding carboxypeptidase 11751205405238874Rat
1311496Spock1sparc/osteonectin, cwcv and kazal like domains proteoglycan 11767415047221685Rat
1310884Barx1BARX homeobox 1171599041215993887Rat
1307284Wnk2WNK lysine deficient protein kinase 2171550367215612479Rat
1309551Nol8nucleolar protein 8171499039415013784Rat
1307627Tmed9transmembrane p24 trafficking protein 91790296469034160Rat
1309691Higd2aHIG1 hypoxia inducible domain family, member 2A171002185310022777Rat
1560576Cdhr2cadherin-related family member 21798768539913356Rat
1311271Ippkinositol-pentakisphosphate 2-kinase171519019115235203Rat
1309020Snrnp48small nuclear ribonucleoprotein U11/U12 subunit 48172659626626616058Rat
1311507Gfod1Gfo/Idh/MocA-like oxidoreductase domain containing 1172140014221504972Rat
1311345Qng1Q-nucleotide N-glycosylase 11762813776288976Rat
1560399Rnf182ring finger protein 182172102611021081760Rat
1311452Spata31d3SPATA31 subfamily D, member 31749648154971203Rat
1549776Aspnasporin171507991015104369Rat
1305679Adtrpandrogen-dependent TFPI-regulating protein172293001222993834Rat
1310904Rreb1ras responsive element binding protein 1172687668627002615Rat
1309214B4galt7beta-1,4-galactosyltransferase 71790185149027591Rat
1305228Phf2PHD finger protein 2171578322115851209Rat
1310701Kdm1blysine demethylase 1B171760296117643865Rat
1308605Elovl2ELOVL fatty acid elongase 2172354452023584855Rat
1308171Ognosteoglycin171503206915052626Rat
1305794Dspdesmoplakin172662360226671692Rat
735093Bicd2BICD cargo adaptor 2171525977315304889Rat
1308482Sfxn1sideroflexin 1171048625010522640Rat
1306955Gkap1G kinase anchoring protein 11763839636423684Rat
1310961Ssr1signal sequence receptor subunit 1172683372026861821Rat
1310933Susd3sushi domain containing 3171540084515417851Rat
1307825Kif13akinesin family member 13A171776659717948517Rat
1307845Fam8a1family with sequence similarity 8, member A1171802660118035509Rat
1308082Prelid1PRELI domain containing 11793053499308389Rat
1307140Sptlc1serine palmitoyltransferase, long chain base subunit 1171187724911916295Rat
1309112Rab24RAB24, member RAS oncogene family1793083639310568Rat
1307673Mcur1mitochondrial calcium uniporter regulator 1172114252621159651Rat
1308762Gprin1G protein-regulated inducer of neurite outgrowth 11798636419876832Rat
1307183Slc35b3solute carrier family 35 member B3172584659025873115Rat
1309677Cd83CD83 molecule172088730920907009Rat
1310267Tfap2atranscription factor AP-2 alpha172402871624047507Rat
1305404Lect2leukocyte cell-derived chemotaxin 21780447598050983Rat
1307661Tbc1d7TBC1 domain family, member 7172153070921548556Rat
1311758Ddx41DEAD-box helicase 411791029269108415Rat
1311725Fgd3FYVE, RhoGEF and PH domain containing 3171532484815387271Rat
1310671Rmi1RecQ mediated genome instability 11762565376264523Rat
1308965Lman2lectin, mannose-binding 21792692369286923Rat
1308068Zfp346zinc finger protein 3461794937899523681Rat
1305275Ror2receptor tyrosine kinase-like orphan receptor 2171197283012148152Rat
1306210Spin1spindlin 1171405568514105366Rat
1310554Sema4dsemaphorin 4D171343032413537146Rat
1307698Ptpdc1protein tyrosine phosphatase domain containing 1171602896416076512Rat
1306846Bloc1s5biogenesis of lysosomal organelles complex 1 subunit 5172617196526197276Rat
1303187Phactr1phosphatase and actin regulator 1172156036422040166Rat
1562024RGD1562024RGD15620241781655748172887Rat
1564922Sycp2lsynaptonemal complex protein 2-like172358921723645273Rat
1565934Nol7nucleolar protein 7172130365021307042Rat
1565972Spata31d1SPATA31 subfamily D member 11749427544948640Rat
1561940Ranbp9RAN binding protein 9172122080721303009Rat
1561506Tmem170btransmembrane protein 170B172313115123169946Rat
1565218Klhl3kelch-like family member 31765230896645971Rat
1562963C17h6orf52similar to human chromosome 6 open reading frame 52172375335923776251Rat
1566033RGD1566033similar to BC003940 protein171012156810121915Rat
1564013Stmnd1stathmin domain containing 1171839331218420655Rat
1561563Spata31d1bspermatogenesis associated 31 subfamily D, member 1B1749530854959007Rat
1561671Uqcc1-ps1ubiquinol-cytochrome c reductase complex assembly factor 1, pseudogene 1171193602611936668Rat
1561898Prr7proline rich 7 (synaptic)1791643759173669Rat
1311840Dok3docking protein 31791096339115188Rat
1311669Thoc3THO complex subunit 3171014318410152375Rat
1311681TifabTIFA inhibitor1784334068436541Rat
1311056Eef1e1eukaryotic translation elongation factor 1 epsilon 1172614865226159358Rat
1559908RGD1559908similar to hypothetical protein1751007655103158Rat
1311127Gcm2glial cells missing transcription factor 2172365263723661754Rat
1562047Cks2CDC28 protein kinase regulatory subunit 2171357061113575770Rat
1311796Gadd45ggrowth arrest and DNA-damage-inducible, gamma171337684213378587Rat
1311167Tspan17tetraspanin 171798192129826851Rat
1562335Fam193bfamily with sequence similarity 193, member B1790668189099511Rat
1565353Pak1ip1PAK1 interacting protein 1172374221723753325Rat
1303285Sirt5sirtuin 5172131002821337137Rat
1566133Fbxw17F-box and WD-40 domain protein 17171435953314379386Rat
1566359RGD1566359similar to RIKEN cDNA B230219D221789230418932927Rat
1359256LOC306766hypothetical LOC306766171004914210061819Rat
1583843S1pr3sphingosine-1-phosphate receptor 3171378105013794408Rat
1564546IdnkIdnk, gluconokinase1764835756490780Rat
1586820Gas1growth arrest-specific 11744820144485155Rat
1566043Nutm2fNUT family member 2F171442364614437059Rat
1584029Rbm24RNA binding motif protein 24171827568118288231Rat
1560349Pole3-ps2DNA polymerase epsilon 3, accessory subunit, pseudogene 2172613592726136417Rat
1359175F12coagulation factor XII1792076839215530Rat
1589788Ntmt1-ps1N-terminal Xaa-Pro-Lys N-methyltransferase 1, pseudogene 1172510218825102849Rat
1591101LOC689526hypothetical protein LOC689526171478035614786234Rat
1592304LOC689458similar to vitamin A-deficient testicular protein 11-like171462039514628951Rat
1592314Gtf2f2-ps1general transcription factor IIF subunit 2, pseudogene 1171461069614614672Rat
1590759Dtnbp1dystrobrevin binding protein 1171968521819776668Rat
1592325LOC689437similar to vitamin A-deficient testicular protein 11-like171460136514608162Rat
1591023Smim13small integral membrane protein 13172349766223515705Rat
1586015Tut7terminal uridylyl transferase 71748492874903542Rat
1587838Pfn3profilin 31792175959218122Rat
1563684Hnrnpa0heterogeneous nuclear ribonucleoprotein A01765074136509373Rat
1563703Slc25a48solute carrier family 25, member 481781199648161293Rat
1585494Eif4e1beukaryotic translation initiation factor 4E family member 1B1798313389856250Rat
1589812Ofcc1orofacial cleft 1 candidate 1172450691924813225Rat
1585156Nlrp4el-ps1NLR family, pyrin domain containing 4E like, pseudogene 1171766237517674258Rat
1585162Tpmtthiopurine S-methyltransferase171764408817662709Rat
1591663Jarid2jumonji and AT-rich interaction domain containing 2171977748719957696Rat
1593459Jpt1-ps2Jupiter microtubule associated 1, pseudogene 2172225618122257112Rat
1596092LOC690414hypothetical protein LOC690414172055384920563628Rat
1589530Cenppcentromere protein P171501386915189312Rat
1589384Golm1golgi membrane protein 11749959255044329Rat
1593548LOC689316hypothetical protein LOC689316171435724914421194Rat
1596027Slc25a31-ps1solute carrier family 25 member 31, pseudogene 1172112521921126780Rat
1594820Nxnl2nucleoredoxin-like 2171403115114035897Rat
1590239Pcbd2pterin-4 alpha-carbinolamine dehydratase 21788451618896343Rat
1591058LOC689569similar to vitamin A-deficient testicular protein 11-like171486848614873837Rat
1594779Atp5mc2-ps5ATP synthase membrane subunit c locus 2, pseudogene 5171424519614245875Rat
1593560LOC689303similar to vitamin A-deficient testicular protein 11-like171433870014423635Rat
1594767Wbp11-ps4WW domain binding protein 11, pseudogene 4171430358414309651Rat
2319147LOC100361933ribosomal protein S12-like171524259715243105Rat
2318699Rpl27-ps4ribosomal protein L27, pseudogene 4171796432517965331Rat
2318818Rpl35-ps1ribosomal protein L35, pseudogene 11783448408345242Rat
2320282Ecm2extracellular matrix protein 2171512019415152536Rat
2319689Simc1SUMO-interacting motifs containing 1171006175210106938Rat
2322676Prc1-ps1protein regulator of cytokinesis 1, pseudogene 1172582989325831593Rat
2321935LOC100360522ribosomal protein P1-like1784316568432740Rat
2324338LOC100362620CDC28 protein kinase regulatory subunit 2172427143124271897Rat
4888548Mir3542microRNA 35421791075669107682Rat
4888582Mir3596bmicroRNA 3596b171611589416115988Rat
4888554Mir3566microRNA 3566172351605923516167Rat
2324472Rpl13a-ps4ribosomal protein L13A, pseudogene 4172398563923986287Rat
2325350Mirlet7f-1osmicroRNA let7f-1, opposite strand171611413416114222Rat
2325409Mirlet7a1microRNA let-7a-1171611376616113859Rat
2323973Txndc5thioredoxin domain containing 5172628988026318025Rat
2325464Mir7-1microRNA 7-11762732646273360Rat
2325511Mir874microRNA 8741766206496620724Rat
2325622Mirlet7dmicroRNA let-7d171611589316115990Rat
4888607Mirlet7f-1microRNA let7f-1171611413016114226Rat
2324560LOC100362172LRRGT00112-like172296404522985226Rat
6488044LOC100912252uncharacterized LOC1009122521749745404982400Rat
6495217Rpl6-ps6ribosomal protein L6, pseudogene 6171511115315112082Rat
6498862LOC100910343uncharacterized LOC100910343171311055013133633Rat
6502900Rplp0-ps1ribosomal protein lateral stalk subunit P0, pseudogene 1171046213410463316Rat
6497608Spata31c2SPATA31 subfamily C member 2171465709614664280Rat
7514337LOC102553430uncharacterized LOC1025534301746368754646465Rat
7509506LOC102548345uncharacterized LOC102548345172335925423405529Rat
7511883LOC102555503uncharacterized LOC1025555031779926328000665Rat
7517520LOC102546683uncharacterized LOC102546683171650457716512507Rat
7539610LOC102555870uncharacterized LOC102555870171747659317480276Rat
7662067LOC102552119uncharacterized LOC102552119171080346010809023Rat
7662893LOC102546383uncharacterized LOC102546383172672250626731353Rat
7663429LOC102553206uncharacterized LOC1025532061745715944576482Rat
7632620LOC102547665spermatogenesis-associated protein 31D1-like1749287064935063Rat
7647881LOC102549715uncharacterized LOC102549715171428637114290564Rat
7664121LOC102548532uncharacterized LOC1025485321751044725107704Rat
7665766LOC102546543uncharacterized LOC102546543171655822116565695Rat
7650032LOC102547185uncharacterized LOC1025471851783681918374447Rat
7622881LOC102550662uncharacterized LOC102550662172074021520794748Rat
7623637LOC102554492uncharacterized LOC102554492171869579918734682Rat
7576018LOC102553373uncharacterized LOC1025533731746179434624504Rat
7655438LOC102548031uncharacterized LOC102548031171446404814472628Rat
7587129LOC102556322uncharacterized LOC102556322171381457213820743Rat
7587473LOC102551541uncharacterized LOC102551541172319098523291014Rat
7608842LOC102550792uncharacterized LOC1025507921797822729787085Rat
7609640LOC102554142uncharacterized LOC102554142171182708911861334Rat
7610838LOC102556474uncharacterized LOC102556474171411592414122693Rat
7615661LOC102550793uncharacterized LOC102550793171577650115782662Rat
7593311LOC102547830uncharacterized LOC102547830172151832221530747Rat
7543905LOC102548918uncharacterized LOC1025489181756694035682782Rat
7597597LOC102552470uncharacterized LOC102552470171101673911018366Rat
7574079Kif11-ps1kinesin family member 11, pseudogene 1171566850515673667Rat
7574542LOC102555869uncharacterized LOC102555869171306004213082861Rat
7578483LOC102551320uncharacterized LOC1025513201763410166383887Rat
7579019LOC102546342uncharacterized LOC102546342171450942014516154Rat
7547464LOC102546542uncharacterized LOC102546542171425869914265934Rat
7549191LOC102553145uncharacterized LOC1025531451745272224537542Rat
7566499LOC102551833uncharacterized LOC1025518331775071297518578Rat
7566878Rpl9-ps9ribosomal protein L9, pseudogene 9172299441922995920Rat
7585937LOC102547119spermatogenesis-associated protein 31C2-like171142981911438281Rat
7684578LOC102551899uncharacterized LOC102551899172082199820859865Rat
7684968LOC102555259uncharacterized LOC102555259172503663825038772Rat
7714505LOC102549141uncharacterized LOC1025491411761558596159448Rat
7733938LOC102549716high mobility group protein B1-like171484535114924605Rat
7715679LOC102547829uncharacterized LOC1025478291749377944945104Rat
7743140LOC102548003uncharacterized LOC102548003172253693022542986Rat
7744091LOC102555284uncharacterized LOC1025552841777312497796392Rat
7700383LOC102549787uncharacterized LOC102549787171932381619431768Rat
7700893LOC102554241uncharacterized LOC102554241171186512311877155Rat
7721817LOC102554989zinc finger protein 120-like171824521818247103Rat
7680951LOC102552096uncharacterized LOC102552096171594656815968132Rat
7710914LOC102556358uncharacterized LOC102556358172647853126577796Rat
9177842Rps27a-ps19ribosomal protein S27a, pseudogene 191747864064786915Rat
9163311LOC103694056proteasome maturation protein pseudogene172043174520435233Rat
9123009LOC103694070uncharacterized LOC103694070172119817921201275Rat
9308966LOC103694034uncharacterized LOC1036940341786977688710223Rat
9251698Lnc012long non-coding RNA 012171020480010237980Rat
9295742LOC103694036proline-rich protein 2-like1762993006299947Rat
9256189LOC103694054uncharacterized LOC103694054172074715120765166Rat
9299224LOC103694041uncharacterized LOC103694041171272432212729314Rat
9421638LOC103694025uncharacterized LOC1036940251743750724422249Rat
9425447LOC103694058uncharacterized LOC103694058172378845923798379Rat
9440658LOC103694026uncharacterized LOC1036940261746692224793002Rat
11434133Ap3s1-ps3adaptor related protein complex 3 subunit sigma 1, pseudogene 31773745067381133Rat
11455007Trnak-cuu17transfer RNA lysine (anticodon CUU) 17171461041314610485Rat
11461516LOC108348503uncharacterized LOC1083485031784221898426094Rat
11461795LOC108348512uncharacterized LOC108348512171250403312533736Rat
11465102LOC108348537uncharacterized LOC108348537172045137520460265Rat
11445668LOC108348502uncharacterized LOC1083485021782201448236018Rat
11458415LOC108348529uncharacterized LOC108348529171671517916738936Rat
11364454LOC108353117uncharacterized LOC1083531171757028975713846Rat
11459529LOC108353141uncharacterized LOC108353141171426706814285443Rat
11460312LOC108348531uncharacterized LOC108348531171774517017754615Rat
11442307LOC10834850960S ribosomal protein L35a pseudogene171047781810478314Rat
11394758LOC108348527uncharacterized LOC108348527171649932816539903Rat
11405962LOC108348493uncharacterized LOC1083484931746472614652444Rat
11421026LOC108348495uncharacterized LOC1083484951754477905454509Rat
11396780LOC108348476spermatogenesis-associated protein 31-like171116291711169296Rat
11386194LOC108348505uncharacterized LOC1083485051790899989102707Rat
11386207LOC108348510uncharacterized LOC108348510171093153910966537Rat
11376984LOC108348619uncharacterized LOC1083486191765175536522745Rat
11379150LOC108348532uncharacterized LOC108348532171853856118563808Rat
11404592LOC108348511uncharacterized LOC108348511171107059611085374Rat
11501598LOC108348513uncharacterized LOC108348513171268618912689484Rat
11505768LOC108348498uncharacterized LOC1083484981775889957623842Rat
11481785LOC108348497uncharacterized LOC1083484971772405967274016Rat
11498038LOC10834852360S ribosomal protein L7a pseudogene171508826715090514Rat
11513126LOC108348530uncharacterized LOC108348530171680555716815648Rat
11494799LOC108348545uncharacterized LOC108348545172271467622746788Rat
11483241LOC108348536uncharacterized LOC108348536172025514920383065Rat
11486166LOC108348525uncharacterized LOC108348525171612050116139230Rat
11489292LOC108353122uncharacterized LOC108353122171457522214601220Rat
11490069LOC108348547uncharacterized LOC108348547172506851525073508Rat
11492159LOC108353155uncharacterized LOC108353155171223662712279384Rat
11492955LOC108348514uncharacterized LOC108348514171287073912876327Rat
41379058LOC120097802igE-binding protein-like171475688314791952Rat
41276873LOC120097834uncharacterized LOC1200978341797173879721262Rat
41282725LOC120097747uncharacterized LOC1200977471761095936122520Rat
41322840LOC120097876uncharacterized LOC120097876172269803822701819Rat
41323190LOC120097782uncharacterized LOC120097782172011596920118981Rat
41088077LOC120097818uncharacterized LOC1200978181761516296153328Rat
41088446LOC120098023U2 spliceosomal RNA171691301416913182Rat
41169198LOC120097901uncharacterized LOC120097901171297591612979231Rat
41249018LOC120097804uncharacterized LOC120097804171468443114689912Rat
41278316LOC120097816uncharacterized LOC120097816171910285819115253Rat
41357930LOC120097947uncharacterized LOC1200979471781080708112197Rat
41358003LOC120097814uncharacterized LOC120097814172308114423100703Rat
41383133LOC120098031U4 spliceosomal RNA172506229225062377Rat
41170662LOC120097973small nucleolar RNA SNORD113/SNORD114 family1764286966428778Rat
41279858LOC120097807uncharacterized LOC120097807171447808214481647Rat
41115611LOC120097835uncharacterized LOC120097835172223117222259744Rat
41387636LOC120098048U6 spliceosomal RNA172127738321277488Rat
41116927LOC120097866uncharacterized LOC120097866171648131216485779Rat
41174187Rps28-ps2ribosomal protein S28, pseudogene 2171253813512582827Rat
41094232LOC120097810uncharacterized LOC120097810172180470021814935Rat
41118493LOC120097987small nucleolar RNA SNORA17171608215716082288Rat
41119229Rpl29-ps4ribosomal protein L29, pseudogene 4172398021123980662Rat
41175313LOC120097931serine/arginine repetitive matrix protein 3-like1751110155123703Rat
41391418LOC120097969U1 spliceosomal RNA172497361624973777Rat
41121784LOC120097809uncharacterized LOC120097809171322849613251893Rat
41190339LOC120097908uncharacterized LOC1200979081773859287390162Rat
41212692LOC120097846uncharacterized LOC1200978461760122376028233Rat
41212870LOC120097735uncharacterized LOC1200977351771512437171738Rat
41213519LOC120098051U6 spliceosomal RNA171966594119666044Rat
41097826LOC120098045U6 spliceosomal RNA172661781826617923Rat
41214609Smim32small integral membrane protein 321778529917857235Rat
41367685LOC120097777uncharacterized LOC1200977771756111175613436Rat
41368341LOC120097914uncharacterized LOC1200979141772909297294329Rat
41180815LOC120097801spermatogenesis-associated protein 31E1-like171431743314324559Rat
41288467LOC120097877uncharacterized LOC120097877171230628612312966Rat
41288532LOC120098056U6 spliceosomal RNA171921150919211617Rat
41126457LOC120097884uncharacterized LOC1200978841744306884433341Rat
41070119LOC120097952uncharacterized LOC120097952172351561123518056Rat
41103460LOC120097831uncharacterized LOC120097831172092314420923960Rat
41159380LOC120097786uncharacterized LOC1200977861780080868011331Rat
41196198LOC120097957uncharacterized LOC120097957171730269417306531Rat
41292693LOC120097853uncharacterized LOC120097853171795560517958448Rat
41372426LOC120097990small nucleolar RNA SNORA17171221618312216312Rat
41399398LOC120097749uncharacterized LOC120097749171506893115069724Rat
41071520LOC120097948uncharacterized LOC1200979481785785528603094Rat
41071758LOC120098057U6 spliceosomal RNA171779365417793761Rat
41162238LOC120097850uncharacterized LOC120097850172682784326833614Rat
41293038Trnas-aga29transfer RNA serine (anticodon AGA) 291789856008985674Rat
41294837LOC120097817uncharacterized LOC120097817171044303610449288Rat
41295529LOC120097871uncharacterized LOC120097871172384817723852178Rat
41376518LOC120098042U6 spliceosomal RNA171793318517933292Rat
41402818LOC120097998small nucleolar RNA SNORA171784450208445143Rat
41108574Nkiras1-ps1NFKB inhibitor interacting Ras-like 1, pseudogene 1171770607117708553Rat
41108695LOC120098037U6 spliceosomal RNA171938554119385647Rat
41199942LOC120098010small nucleolar RNA U13171756722117567325Rat
41378093LOC120097738spermatogenesis-associated protein 31A3-like171136024111363236Rat
41165672Trnaa-ugc8transfer RNA alanine (anticodon UGC) 8171561598715616059Rat
41165812LOC120097805uncharacterized LOC120097805171462205114627071Rat
41166359LOC120098032U4 spliceosomal RNA171073729910737389Rat
41200783LOC120097836uncharacterized LOC1200978361762257386236919Rat
41233374LOC120097808uncharacterized LOC120097808171250207712504880Rat
40998148LOC120097924uncharacterized LOC120097924171018108010210110Rat
40946443LOC120097857uncharacterized LOC120097857171828002018355557Rat
41013042LOC120098043U6 spliceosomal RNA171967016119670266Rat
40930565LOC120098019U2 spliceosomal RNA171048650010486619Rat
41003373LOC120098012small nucleolar RNA SNORA84171498507314985205Rat
40933042LOC120097934uncharacterized LOC120097934171995622019960137Rat
41005729LOC120097867uncharacterized LOC1200978671755077365517832Rat
40936389LOC120097815uncharacterized LOC120097815171894291818949851Rat
40962041LOC120097840eukaryotic translation initiation factor 1-like172150512121516312Rat
40964660LOC120097800thymosin beta-10-like171413565414135897Rat
40964924LOC120097907uncharacterized LOC120097907172093149320940445Rat
41009486LOC120097821uncharacterized LOC120097821172652309426537904Rat
40940609LOC120097917uncharacterized LOC120097917171479397714824723Rat
40941242LOC120097892uncharacterized LOC1200978921774995427501044Rat
40941432LOC120098049U6 spliceosomal RNA1782705378270642Rat
40944361LOC120097819uncharacterized LOC120097819171105048111058723Rat
40995008LOC120097872uncharacterized LOC120097872172380082223808093Rat
40996526Rps3a-ps7ribosomal protein S3a, pseudogene 7172505761625058293Rat
41243183LOC120097898uncharacterized LOC120097898172080675920815422Rat
41024756LOC120097784uncharacterized LOC120097784172693041726936663Rat
41048938LOC120097776uncharacterized LOC1200977761757743385779952Rat
41026648LOC120097855uncharacterized LOC120097855171820273618209427Rat
41246617LOC120097913uncharacterized LOC1200979131773125637313818Rat
41316127LOC120097868uncharacterized LOC120097868171105891611066506Rat
41028282LOC120097739uncharacterized LOC120097739172287609322895115Rat
41029135LOC120097746uncharacterized LOC1200977461761018476108743Rat
41051359LOC120097889igE-binding protein-like172624113626242116Rat
41030591LOC120097806uncharacterized LOC120097806171470894714739691Rat
41255156LOC120097825uncharacterized LOC120097825172620476926214358Rat
41255598LOC120097774uncharacterized LOC1200977741756312395631604Rat
41338494LOC120097978small nucleolar RNA SNORA2/SNORA34 family171357293913573075Rat
41151729LOC120098011small nucleolar RNA U13172139180521391892Rat
41335497LOC120097859uncharacterized LOC120097859172001479820026288Rat
41032533LOC120097842uncharacterized LOC120097842171956586619579796Rat
41314589LOC120097837uncharacterized LOC120097837171315814913170015Rat
41314893LOC120097858uncharacterized LOC120097858171846560018481515Rat
41060467LOC120097854uncharacterized LOC120097854171803563818039319Rat
41224811Gcnt2-ps1glucosaminyl (N-acetyl) transferase 2, pseudogene 1172390937423917596Rat
41337267LOC120097909uncharacterized LOC120097909171732324317338286Rat
41062017LOC120097822uncharacterized LOC120097822171386107413864947Rat
41063048LOC120097935uncharacterized LOC120097935171610527116116498Rat
41064775LOC120097773uncharacterized LOC1200977731755767385579554Rat
41064823LOC120097949uncharacterized LOC1200979491786880928698777Rat
41228713LOC120097851uncharacterized LOC120097851171756238317563112Rat
41235352LOC120098002small nucleolar RNA SNORA17171286885012868949Rat
41040258LOC120097874uncharacterized LOC120097874172117485221184327Rat
41018001LOC120098038U6 spliceosomal RNA1792358369235942Rat
41041361LOC120097933uncharacterized LOC120097933171429506114305709Rat
41019260LOC120097954uncharacterized LOC120097954172584235225846557Rat
41042245LOC120097856uncharacterized LOC120097856171806025718061663Rat
41042466LOC120097750uncharacterized LOC1200977501772335557276920Rat
41044415Trnas-aga52transfer RNA serine (anticodon AGA) 521761169906117064Rat
41068176LOC120097911uncharacterized LOC120097911172007800520086112Rat
41239926LOC120097982small nucleolar RNA SNORA481761847446184884Rat
41074434LOC120097976small nucleolar RNA SNORA24171496187714961996Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10352D17Wox11941754656985465879Ratregion
10484D17Mgh11112171053898510539099Ratregion
11257D17Wox16171914157719141833Ratregion
34276D17Mgh2126171533061315330732Ratregion
34588D17Mco4215171053990410540108Ratregion
33573D13Mit131061781124578112650Ratregion
36185D17Rat11129172491175924911896Ratregion
36245D17Rat7138171804572718045867Ratregion
37210D17Rat113144172280921822809348Ratregion
37386D17Rat762201779799687980186Ratregion
35302D17Rat9168172301710123017269Ratregion
35354D17Rat61561799912869991442Ratregion
36910D17Rat8168172178284121783009Ratregion
36980D17Rat51481792368219236964Ratregion
37606D17Rat81239172105593221056179Ratregion
37780D17Rat93206171330887813309080Ratregion
37824D17Rat1412401743770494377293Ratregion
37934D17Rat72229172139491721395159Ratregion
36572D17Rat10141172502197625022117Ratregion
34827D17Rat12158172702794927028127Ratregion
35114D17Rat92131171060836710608498Ratregion
35917D17Rat41731757054805705653Ratregion
39708D17Rat135200171951181819512021Ratregion
38138D17Rat66208171608644516086645Ratregion
38150D17Rat801991743544874354678Ratregion
38348D17Rat59170172188150821881669Ratregion
38384D3Rat1152001792421609242380Ratregion
40514D17Rat134140171327115413271296Ratregion
40658D17Rat117212172498265224982845Ratregion
38416D17Rat70200171528186615282062Ratregion
38498D17Rat86249171245103112451284Ratregion
38664D17Rat1012251793483189348531Ratregion
38698D17Rat75268171678642716786706Ratregion
38706D17Rat84138172365318423653323Ratregion
38734D17Rat902361781895278189770Ratregion
38772D17Rat102220172129303921293263Ratregion
38786D17Rat83136172678017926780311Ratregion
40000D17Rat115220172197526821975515Ratregion
38992D17Rat61221171398677313986994Ratregion
42032D17Arb1125172614356426143688Ratregion
41216D17Rat116155172444207724442230Ratregion
41258D17Rat1091261794466489446788Ratregion
41306D17Rat1061401791752249175368Ratregion
43077D17Rat1832371745910684591299Ratregion
43078D17Rat184247171234533112345554Ratregion
43080D17Rat157206171275609212756301Ratregion
43082D17Rat142207171631690816317111Ratregion
43083D17Rat159213171393147513931681Ratregion
43084D17Rat161200172521500025215194Ratregion
40778D17Rat1033921773220687322471Ratregion
40920D17Rat112221171502195215022177Ratregion
40956D17Rat1072001792013659201562Ratregion
40982D17Rat108110171084318510843291Ratregion
41028D17Rat110136171608546816085604Ratregion
41074D17Rat114113171873510718735222Ratregion
41604D17Rat1041261786400948640244Ratregion
60142D17Got121581793019379302095Ratregion
60146D17Got28139171942032019420459Ratregion
60147D17Got36209172620570926205918Ratregion
45404D17Got112361761525286152762Ratregion
45406D17Got41641743770424377206Ratregion
45409D17Got61601745911014591261Ratregion
45410D17Got51451747006284700773Ratregion
45411D17Got71191758468515846967Ratregion
45418D17Got91721785809648581133Ratregion
45419D17Wox2971779796247979729Ratregion
45421D17Got10971768082726808369Ratregion
45422D17Got82291764580536458282Ratregion
45424D17Got13133171209513512095268Ratregion
45428D17Got15278171422074114221019Ratregion
45429D17Got21224171683815316838377Ratregion
45431D17Got16167171754877917548946Ratregion
45432D17Got18168171647544116475609Ratregion
45433D17Got20257171607149116071747Ratregion
45434D17Got17238171646414616464386Ratregion
45435D17Got22163171685549016855653Ratregion
45436D17Got24192171844564418445836Ratregion
45437D17Got23116171844535118445468Ratregion
45438D17Got25177171861162018611799Ratregion
45439D17Got26204171864372918643933Ratregion
45440D17Got27280171933699719337277Ratregion
45443D17Got29178172066577920665957Ratregion
45444D17Got30176172372582923726005Ratregion
45445D17Got33194172498701824987212Ratregion
45446D17Got32252172490749624907747Ratregion
45451D17Got35147172614355526143702Ratregion
61301D17Mco10194172308036823080567Ratregion
62457D17Uia3132172240536422405496Ratregion
66511D17Mco1165172339312123393334Ratregion
67261D17Arb151758689835869137Ratregion
1632124D17Got205107172293910422939206Ratregion
1632314D9Got2302401774025247402556Ratregion
1627271D17Mco12259171283874212839001Ratregion
1627804D17Got202195171678330616783496Ratregion
1627958D17Wox301791483179148412Ratregion
1627958D17Wox301792368399236938Ratregion
1629166D17Wox23226171054339110543617Ratregion
1641631D17Got203113171738019917380307Ratregion
1633512D17Got204166171998570619985872Ratregion
1634912D17Got2142491780044678004716Ratregion
1635731D17Got201148171393146213931610Ratregion
1635894D17Got200196171677008316770281Ratregion
1638394D17Got206162172481009524810257Ratregion
1634344D17Wox281795992869599469Ratregion
7205776D13S12423791769999487000327Ratregion
7192488Idb4271171639114416391760Ratregion
7206288Jarid2224171979727419797498Ratregion
7206418RAN918171234719112348109Ratregion
7206458Ror2950171214691112147861Ratregion
7206508UniSTS:546781115171337793113378527Ratregion
5035745RH791301331765091406509273Ratregion
5036023PMC86941P1356171337706413377420Ratregion
5038700RH1267622251762568736257098Ratregion
5038752RH1273122191798762319876532Ratregion
5038760RH1273172101779556597955869Ratregion
5038802RH127341216171743161717431835Ratregion
5038886RH1273891801749027074902887Ratregion
5038954RH127428190171802454918024739Ratregion
5039258RH127603195171747977917479974Ratregion
5036418Mx1170171260987112610041Ratregion
5036711AU0489551441752693495269493Ratregion
5037177RH91165179171525981815259997Ratregion
5037181RH984171361744857864485922Ratregion
5035532UniSTS:2654214061783631438363549Ratregion
5035560RPLP1881784319948432082Ratregion
5035711TFAP2A280172403172324032003Ratregion
5033851RH1403552471755590685559315Ratregion
5025994RH130497180171766250817662688Ratregion
5031502AU048113178172479270424792877Ratregion
5034099RH141358212172346770023467912Ratregion
5028743Sncb2111798467519846962Ratregion
5031542AU047986165171944646019446625Ratregion
5034215RH141803211171499060414990815Ratregion
5034229RH141853210171802747218027682Ratregion
5034281RH142048198172131005221310251Ratregion
5026288RH131636190172088733920887529Ratregion
5026296RH131669184171802677918026963Ratregion
5026296RH131669184171802677918026963Ratregion
5026410RH1321012171751045205104737Ratregion
5028983RH1430672281789254678925695Ratregion
5031762AU047237205171622485716225066Ratregion
5029131RH1436401181784381318438253Ratregion
5034580BE119850151172158373921583890Ratregion
5026710RH133238180171748251317482693Ratregion
5029289RH144234280172107915421079434Ratregion
5032333Hrh2496171038501910385515Ratregion
5027024RH1344391851799496879949872Ratregion
5027034RH1344792111764767856476996Ratregion
5027085D3S3819175171577329015773465Ratregion
5032409C88147113171802471018024823Ratregion
5035372AA818380181171928694819287129Ratregion
5035420BM3868882041791127809112984Ratregion
5035464AI235989217171189003711890254Ratregion
5034918AI1033752441792894439289687Ratregion
5029959BF3882001891756839175684106Ratregion
5032793RH1353181931758350675835260Ratregion
5027461AV225605118171229560412295722Ratregion
5027463U712061091787995268799635Ratregion
5030097BE110258152171000821510008367Ratregion
5030175AI1453812201798546989854918Ratregion
5032901RH136902180172346776523467945Ratregion
5025110BB196053116171518877915188895Ratregion
5025112BB2540001451778334067833551Ratregion
5030239BI2934351771762172436217420Ratregion
5025380RH128092209171242445712424666Ratregion
5028151D13Mit156120171380597013806090Ratregion
5028153D13Mit17974171992416819924242Ratregion
5033667RH1396661971766454436645639Ratregion
5031011BF405975162172082046520820768Ratregion
5025936RH130263195171518905515189250Ratregion
5028551C86281185171337687113377056Ratregion
5028553AI1589442141750344485034662Ratregion
5031063BE115555171172631671226316883Ratregion
5031105BF412854171172184880621848976Ratregion
5051889RH94716138171264949612649634Ratregion
5055023RH143561158172684977626849934Ratregion
5053639RH1427651631789409208941083Ratregion
5055871RH144051148171639059216390740Ratregion
5056211RH1442471521763085156308667Ratregion
5056463RH144393145171015295110153096Ratregion
5053757RH142833169171005075610050925Ratregion
5053891RH1429101061799521719952277Ratregion
5056689RH1445232581792860079286265Ratregion
5051969RH947641701778670867867256Ratregion
5054549RH1432881751750349465035121Ratregion
5057380AA859655190172687681026877000Ratregion
5059490AW5245141491789422798942428Ratregion
5057762BF3861481951765344356534630Ratregion
5055713RH143959290172503768225038649Ratregion
5055739RH143974108172358455723584666Ratregion
5058566BI284209203171110248311102686Ratregion
5058588BE1021231741792152949215468Ratregion
5055965RH144105149172188022021880369Ratregion
5056319RH144310124172346640923466533Ratregion
5058708BE102358159171568323615683395Ratregion
5058762BF387059158171807548218075640Ratregion
5058836AI0710051891791149579115146Ratregion
5058844BF393705188172685078026850968Ratregion
5059604BE0974081581754574715457629Ratregion
5059646BE0975272151757031615703376Ratregion
5056597RH1444702851745588134559098Ratregion
5056683RH1445191681792179309218098Ratregion
5056875RH1446311591792799739280132Ratregion
5058118BF3866231501796146979614847Ratregion
5055365RH1437591911793136749313865Ratregion
5055413RH143787259171333604313336302Ratregion
5058978BE102663166171311059913110765Ratregion
5059052BF3939991421772797007279842Ratregion
5052847RH142308187171110143611101623Ratregion
5052991RH1423911621778625597862721Ratregion
5058250BI277828155171006148510061640Ratregion
5058308BF3869991661790149279015093Ratregion
5049880RH1337352121781200548120267Ratregion
5050096RH133860195171791333017913525Ratregion
5058506BF393074242171283244412832686Ratregion
5059198BF3876291661749386354938801Ratregion
5053451RH142656168172040296420403132Ratregion
5057588BF392233180171831476218314942Ratregion
5057820BF386213151171903606919036212Ratregion
5057856BF3862661631757156975715860Ratregion
5050542RH1341161971793056369306100Ratregion
5050720RH1342191911789445828944773Ratregion
5049842RH133713202171873560918735811Ratregion
5053969RH1429551081762915496291657Ratregion
5050708RH134212182172045985820460025Ratregion
5050730RH134225213172350140723501620Ratregion
5050742RH134232192171561092315611115Ratregion
5053273RH1425532651798557089855973Ratregion
5051753RH94639185172631857626318761Ratregion
5054821RH1434441341751855455185679Ratregion
5041726RH1290231881789927058992893Ratregion
5040684RH128424198171545299415453192Ratregion
5040716RH1284422121791644669164678Ratregion
5040896RH128546191171002756010027751Ratregion
5043396RH1300021821793103079310489Ratregion
5044272RH1305071801791082289108408Ratregion
5044434RH130600194171437705914377253Ratregion
5045322RH131111183171191538711915570Ratregion
5045504RH131216217171530525615305473Ratregion
5043968RH130334197171193606311936419Ratregion
5043968RH130334197171193606311936435Ratregion
5044710RH1307592011795098499510050Ratregion
5048716RH133064210171002190610022116Ratregion
5048760RH133089211171229545212295663Ratregion
5048788RH1331061861757438325744018Ratregion
5044510RH130644196172662371026623906Ratregion
5045336RH131119184172115407821154262Ratregion
5047578RH132408192171036620610366398Ratregion
5045986RH1314931831762887286288911Ratregion
5046156RH1315902001793049329305132Ratregion
5047616RH132430217171760253417602751Ratregion
5048908RH133175218171461194614612161Ratregion
5045694RH1313251871784361938436380Ratregion
5047808RH132540206172313126323131469Ratregion
5049006RH133232204171436827314368477Ratregion
5049058RH133262216172697405326974269Ratregion
5049074RH1332712141750337705033984Ratregion
5049176RH133329180172130407921304340Ratregion
5046686RH131896182171054469310544875Ratregion
5047976RH132637183171611626916116452Ratregion
5049030RH133246204172684988826850092Ratregion
5046900RH1320192071762566706256877Ratregion
5048032RH1326692091796224109622619Ratregion
5049408RH133464204171003107110031275Ratregion
5049488RH1335102131799247889925001Ratregion
5047084RH132124193171378131313781506Ratregion
5048178RH132753220171110173011101950Ratregion
5049782RH133678183171551288615513069Ratregion
5047180RH132179218171767685017677068Ratregion
5039540RH1277642021765099846510186Ratregion
5041958RH129157208172631816226318370Ratregion
5042228RH12931401777449627745121Ratregion
5047342RH1322722121749347244934936Ratregion
5048658RH133030181172631897126319152Ratregion
5040232RH1281651801783256268325806Ratregion
5042150RH129269198172619701026197208Ratregion
5040474RH1283041841793053509305534Ratregion
5040596RH128374181172674531026745642Ratregion
5043180RH129878150171977650819776658Ratregion
5039748RH127884180171541664715416827Ratregion
5039846RH127940191172349775123497942Ratregion
5042382RH1294021901752386485238838Ratregion
5042394RH1294092101779556167955826Ratregion
5042410RH129418191171276126412761457Ratregion
5040864RH128527183171403115214031335Ratregion
5043262RH1299251931757392925739485Ratregion
5043480RH130049241171599051915990760Ratregion
5042792RH1296482151764871856487400Ratregion
5042868RH1296932171791311869131404Ratregion
5042986RH1297622011752386375238838Ratregion
5074892RH138279169172197278621972955Ratregion
5073906RH137707171171803103018031201Ratregion
5075462RH138608180171571516515715345Ratregion
5075582RH138677133172408660824086741Ratregion
5072534RH136905193171276126312761458Ratregion
5076118RH138990215172374562623746650Ratregion
5076572RH139253214171503243215032646Ratregion
5072602RH136944152172686166326861815Ratregion
5072732RH1370211501761147566114906Ratregion
5074712RH1381751451778570427857187Ratregion
5077032RH1395202201755592125559432Ratregion
5075276RH138501165171868108918681254Ratregion
5075428RH138588143172350209923502242Ratregion
5075918RH1388722391757013295701568Ratregion
5074754RH1381991821756672495667431Ratregion
5074874RH138268179171892296818923147Ratregion
5080608RH141678187172313259523132782Ratregion
5080662RH1417091841778654217865605Ratregion
5077112RH1395671821789422238942405Ratregion
5075768RH1387862091799582819958490Ratregion
5078020RH140095220171992607519926293Ratregion
5078052RH1401162101762878096288019Ratregion
5076394RH139150151172374148123741632Ratregion
5079718RH1411631951791771719177366Ratregion
5078152RH1401732131778090387809251Ratregion
5079848RH141238220171191500511915225Ratregion
5079868RH141249183172684938726849570Ratregion
5077930RH140042219171001956610019786Ratregion
5078560RH1404141321772188197218951Ratregion
5078588RH140430159171377968313779842Ratregion
5080032RH141344191171813422218134411Ratregion
5072998RH1371752201790305079030727Ratregion
5073050RH1372051961791392389139588Ratregion
5073096RH137235200171260468812604888Ratregion
5073934RH1377231951793323319332526Ratregion
5073970RH137744141171359735313597494Ratregion
5071220RH1349572171753613425361559Ratregion
5073296RH137354215172685673026856945Ratregion
5073376RH1374002071764475096447716Ratregion
5071848RH1353202051792883669288571Ratregion
5073514RH137480209172046132820461537Ratregion
5073788RH137639129171377470713774840Ratregion
5072154RH1366841831778667847866967Ratregion
5074688RH1381611481750476245047772Ratregion
5061738BF402796124171533785015337974Ratregion
5063338BF404113182171434661714346799Ratregion
5063344BE107569161172636715026367311Ratregion
5066654AU048229149171072730310727452Ratregion
5066988AU0480322041771486187148823Ratregion
5066988AU0480322041771487067148823Ratregion
5067920AU047457226172265196022652188Ratregion
5068084AU0473571141761329226133036Ratregion
5068616AU047037210171051659410516637Ratregion
5069952D13Mit157871746578524657939Ratregion
5068840AU046893124171123335511233420Ratregion
5068974AU046807228172674148726741708Ratregion
5069662AU046352232171607152216071758Ratregion
5070239RH94552166172372981223729978Ratregion
5069146AU046695101171053089410530990Ratregion
5069238AU046629348172306265923063003Ratregion
5069254AU0466182561786400308640284Ratregion
5069268AU0466082481798499799850055Ratregion
5060182BF400649206171538662315386830Ratregion
5061940BE112196159171518095515181114Ratregion
5062144BE1062561811769536946953875Ratregion
5065262AA9969061651789979698998134Ratregion
5062382BE106621157171022332010223477Ratregion
5062458BF397915247171916593019166177Ratregion
5065632BE109502150171384645513846605Ratregion
5060718BI2865191971750320155032212Ratregion
5060768BI2866302101750226005022810Ratregion
5062812AW5346111521799483519948503Ratregion
5064108BE120617206171538285815383064Ratregion
5065880AA964229134171048719810487332Ratregion
5060146BE103912159171110264011102799Ratregion
5063690BE107980170171228092812281098Ratregion
5063836BE120016151171021855410218705Ratregion
5065232AA996831215171567745715677671Ratregion
5062386BE106629151171889628718896438Ratregion
5064042BE1205241621790886849088846Ratregion
5065618BF41262790171746606717466157Ratregion
5065796BE1098851821796148609615042Ratregion
5060766BE1044902071793112419311448Ratregion
5060810BF389188171171209381012093981Ratregion
5062616BE1069551571768683006868457Ratregion
5062682BF403835152172313800023138152Ratregion
5065942BE1162232201793146189314838Ratregion
5066074BE116739176171638990916390085Ratregion
5061272BE1114161591778644617864620Ratregion
5064794BE108513163171185147411851637Ratregion
5061458BE1052171511795064449506595Ratregion
5064798BE108539174171603036416030538Ratregion
5064906BF405276174171514420615144380Ratregion
5066558AU048286117172168746521687582Ratregion
5061546BE105422203171001727210017475Ratregion
5084228AA848828126172150424121504367Ratregion
5086088AA8752062131764754666475679Ratregion
5086260AI138122204171915192819152132Ratregion
5082553BF416265196171214776212147958Ratregion
5087826Drd1a103171054258010542683Ratregion
5089801AU049371260172656070626560968Ratregion
5088923AU048850276171928240719282677Ratregion
5089153AU0489861071762499886250025Ratregion
5089179AU0490021531780652578065408Ratregion
5088245AU048453165171579194615792111Ratregion
5083341BG374969186171101680811016994Ratregion
5088303AU048489207172584851925848728Ratregion
5088375AU048532298171774815817748456Ratregion
5083895AA8919031971745963604596557Ratregion
5088657AU0486992101776920517692261Ratregion
5090341AU049693148172003291220033060Ratregion
5090623AU049863223172410827724108498Ratregion
5084232AI013304118172404652824046645Ratregion
5081571BF414013234171777941417779648Ratregion
5084766AI411450182171930641319306595Ratregion
5085018AI1804181671750344495034616Ratregion
5088175AU048412215171207497212075187Ratregion
5085427BQ202174158172115823521158393Ratregion
5080726RH141746194171802377218023966Ratregion
5080740RH1417542161793120989312313Ratregion
5080842RH141814181171512108115122214Ratregion
5085232AA7996071991789232498923448Ratregion
5085605BM384003171171323901713239188Ratregion
5085623Slc34a11641792189919219155Ratregion
5085707BE102659158171003025710030415Ratregion
5089111AU048960205172187533721875538Ratregion
5081420AI502631187171885024018850427Ratregion
5082629BF416449153172144463221444785Ratregion
5082695BF4166601811796387079638888Ratregion
5082711BG373710227171788010117880328Ratregion
5080742RH141755184171748414517484329Ratregion
5084680AI171242111172154816321548274Ratregion
5086245AA8914271831750320935032276Ratregion
5086291AA8587841501765090916509241Ratregion
5081178RH142010198171574420215744400Ratregion
5083059BF3907251731757483315748504Ratregion
5083317BF4177431031779499377950040Ratregion
5081400AI5011072021750434415043643Ratregion
5081497BF420045212172033347520333701Ratregion
5083659BG3814031731750255865025759Ratregion
5086841AA801117150172685574526855895Ratregion
5083813AA891724230171525994915260179Ratregion
5083831AI230799201172153287921533080Ratregion
5503484CLTB_4592613171001880310019416Ratregion
5507602Bmp6134172646847326468607Ratregion
5503466RGS14_30615881792494579250045Ratregion
5503925Idb41468171639049416391962Ratregion
5503724CPLX2_9184596171022316710223764Ratregion
5504889ha3011111172461090724611018Ratregion
5505333Barx1965171599077515991740Ratregion
5505340Pitx11511787988568799007Ratregion
5506201Cks2378172427144124271819Ratregion
5506238Satt227926172158128621582212Ratregion
5506352Smad51511778739437874094Ratregion
5506374UniSTS:479010651171500614015006791Ratregion
5506399UniSTS:4791314801765080276508507Ratregion
5506817G46247231171315345613153687Ratregion
5506879G47094237171442961714429854Ratregion
5507017fj85b10.x1101171380339813803499Ratregion
5507303fc02h02.x1396171583556715835963Ratregion
5500131UniSTS:237020971791646599164756Ratregion
5500121UniSTS:237015200171337692913377128Ratregion
5500123UniSTS:237019240171229538512295625Ratregion
5503120HNRPK-1781762729056273699Ratregion
5500603RH1361832001793176479317847Ratregion
5500613RH1362821951764752856475480Ratregion
5501087PMC133998P70171639114616391956Ratregion
5501367G06234261171525979415260055Ratregion
5502192MARC_8169-8170:996688351:110931772174747218567Ratregion
5502680F122321792150489215366Ratregion
5502887Gas110111744834954484506Ratregion
5506765G45205133172284393722844072Ratregion
Position Markers

Flank 1: (D17Rat80)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,354,487 - 4,354,678 (+)MAPPER
Rnor_6.0174,716,067 - 4,716,257NCBI
Rnor_5.0176,945,553 - 6,945,743UniSTS
RGSC_v3.41710,044,241 - 10,044,431UniSTS
RGSC_v3.41710,044,240 - 10,044,431RGD
RGSC_v3.11710,044,241 - 10,044,431RGD
Celera174,481,120 - 4,481,310UniSTS
RH 3.4 Map1736.6RGD
RH 3.4 Map1736.6UniSTS
RH 2.0 Map1725.3RGD
SHRSP x BN Map175.9601RGD
Peak: (D17Rat12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21727,027,949 - 27,028,127 (+)MAPPER
Rnor_6.01727,690,959 - 27,691,136NCBI
Rnor_5.01729,605,177 - 29,605,354UniSTS
RGSC_v3.41733,277,173 - 33,277,509RGD
RGSC_v3.41733,277,332 - 33,277,509UniSTS
RGSC_v3.11733,280,173 - 33,280,350RGD
Celera1726,659,615 - 26,659,792UniSTS
RH 3.4 Map17341.4UniSTS
RH 3.4 Map17341.4RGD
RH 2.0 Map17254.9RGD
SHRSP x BN Map1721.7999RGD
FHH x ACI Map1727.8099RGD
Flank 2: (D17Rat12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21727,027,949 - 27,028,127 (+)MAPPER
Rnor_6.01727,690,959 - 27,691,136NCBI
Rnor_5.01729,605,177 - 29,605,354UniSTS
RGSC_v3.41733,277,173 - 33,277,509RGD
RGSC_v3.41733,277,332 - 33,277,509UniSTS
RGSC_v3.11733,280,173 - 33,280,350RGD
Celera1726,659,615 - 26,659,792UniSTS
RH 3.4 Map17341.4UniSTS
RH 3.4 Map17341.4RGD
RH 2.0 Map17254.9RGD
SHRSP x BN Map1721.7999RGD
FHH x ACI Map1727.8099RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)171398677321975515Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171533061323017269Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172702794936146731Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross 2293456
qtl_general measurement method: at 26 weeks of age, left femora were removed and frozen at -20oC, later slices were cut from the femoral neck and trabecular vBMD (mg/mm3 ) measurements taken from pQCT slices (Norland Stratec XCT Research SA+pQCT, Stratec Electronics, Pforzheim, Germany) 2293456
qtl_general software package: XCT Research SA Plus, version 5.40 2293456
qtl_general allele: COP alleles affect the hip structure 2293456
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456
qtl_statistics_details LOD of 4.7 was recorded for males plus females 2293456