Colcr8 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Colcr8 (Colorectal carcinoma resistance QTL 8) Rattus norvegicus

Symbol: Colcr8
Name: Colorectal carcinoma resistance QTL 8
RGD ID: 1641923
Previously known as: rat Colorectal carcinoma resistance 8; rCcr8
Trait: intestine integrity trait   (VT:0010554)    
Measurement Type: poorly differentiated malignant colorectal tumor number   (CMO:0002076)    
LOD Score: 3.1
P Value: 0.0014
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21822,066,242 - 52,293,055RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01823,184,227 - 53,861,431RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01822,914,726 - 53,100,658RGDRnor5.0
RGSC_v3.41822,807,203 - 54,605,912RGDRGSC3.4
RGSC_v3.11822,833,850 - 54,674,343RGD
Cross Type: intercross
Strains Crossed: ACI/SegHsd WF/CrCrli 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
WF/CrCrli  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification and chromosome mapping of loci predisposing to colorectal cancer that control Wnt/{beta}-catenin pathway and progression of early lesions in the rat. De Miglio MR, etal., Carcinogenesis. 2007 May 17;.
2. Most lung and colon cancer susceptibility genes are pair-wise linked in mice, humans and rats. Quan L, etal., PLoS One. 2011 Feb 24;6(2):e14727.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
619977Hdac3histone deacetylase 3182977063729789850Rat
2544Egr1early growth response 1182646296726466766Rat
2741Nr3c1nuclear receptor subfamily 3, group C, member 1183127168131393320Rat
3266Pcdhb12protocadherin beta 12182913974629142764Rat
2605Fgf1fibroblast growth factor 1183068655530772667Rat
3411Procprotein C, inactivator of coagulation factors Va and VIIIa182376436723774816Rat
2264Camk4calcium/calmodulin-dependent protein kinase IV182458298824811918Rat
69262Cdo1cysteine dioxygenase type 1183943247339447253Rat
3749Spink1serine peptidase inhibitor, Kazal type 1183587072335882693Rat
619917Pcdh12protocadherin 12183010372830119307Rat
628792Slc35a4solute carrier family 35, member A4182828048328284610Rat
628811Slc4a9solute carrier family 4 member 9182812874028144554Rat
631441Ppp2r2bprotein phosphatase 2, regulatory subunit B, beta183465371635080889Rat
620853Apbb3amyloid beta precursor protein binding family B member 3182827316828280347Rat
2526Hbegfheparin-binding EGF-like growth factor182810628428116167Rat
708468Spink1lserine peptidase inhibitor, Kazal type 1-like183582660735835791Rat
631411Nrepneuronal regeneration related protein182501706925046593Rat
620910Fbn2fibrillin 2185149967051703976Rat
621408Csnk1g3casein kinase 1, gamma 3184729954747386538Rat
620746Pcdhgc3protocadherin gamma subfamily C, 3182963301629667865Rat
3015Loxlysyl oxidase184596454445977431Rat
620725Pcdhga4protocadherin gamma subfamily A, 4182950815229543103Rat
620729Pcdhga9protocadherin gamma subfamily A, 9182956461429667865Rat
735029Dele1DAP3 binding cell death enhancer 1183008509330098105Rat
619875Slc23a1solute carrier family 23 member 1182721494027230564Rat
621232Pcdhga11protocadherin gamma subfamily A, 11182958337329667865Rat
620967Map3k2mitogen activated protein kinase kinase kinase 2182380721823879722Rat
620502Gfra3GDNF family receptor alpha 3182629782826326105Rat
727954Tmed7transmembrane p24 trafficking protein 7183931856439325640Rat
1304665Pcdhb5protocadherin beta 5182902431529032183Rat
620522Lmnb1lamin B1185017586150215210Rat
1306824Zfp608zinc finger protein 608184830487348412846Rat
1305171Pcdhb3protocadherin beta 3182901166729014221Rat
1304938Arap3ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3182980621429834217Rat
620588Cd14CD14 molecule182833552228337383Rat
621754Pggt1bprotein geranylgeranyltransferase type I subunit beta183895214738995656Rat
727873Gpr151G protein-coupled receptor 151183456890734570301Rat
1304819Cdc23cell division cycle 23182623689126260611Rat
3052Matr3matrin 3182715409827193212Rat
735084Megf10multiple EGF-like domains 10185060523150755441Rat
1303338Spink6serine peptidase inhibitor, Kazal type 6183639783336410010Rat
620337Pcdha4protocadherin alpha 4182858104028846214Rat
621786Bin1bridging integrator 1182400973124067267Rat
621148Sra1steroid receptor RNA activator 1182826919228273023Rat
2963Kcnn2potassium calcium-activated channel subfamily N member 2183781796638258347Rat
621806Hsd17b4hydroxysteroid (17-beta) dehydrogenase 4184332890343417950Rat
68397Syt4synaptotagmin 4182303697323046380Rat
620809Slc12a2solute carrier family 12 member 2185134828251416448Rat
735103Sil1SIL1 nucleotide exchange factor182687242327104365Rat
1306312Wnt8aWnt family member 8A182613769026143283Rat
708448Phaxphosphorylated adaptor for RNA export185005313350069823Rat
1306331Eif1aeukaryotic translation initiation factor 1A183932569539338043Rat
1305640Wdr55WD repeat domain 55182837536628378834Rat
1308543Purapurine rich element binding protein A182788507127905509Rat
1305596Gykl1glycerol kinase-like 1184612420746126126Rat
1305101Pudppseudouridine 5'-phosphatase184387837443880756Rat
1306047Reep5receptor accessory protein 5182594537525983271Rat
1305108Pcdhga7protocadherin gamma subfamily A, 7182954301829667865Rat
1306123Pcdhb6protocadherin beta 6182904638329049745Rat
1305704Larp4-ps1La ribonucleoprotein 4, pseudogene 1183619609136199824Rat
1307003Brd8bromodomain containing 8182620489226229999Rat
1305072Slc25a46solute carrier family 25, member 46182321595423244917Rat
1305712Etf1eukaryotic translation termination factor 1182650241326530753Rat
1306423Dtwd2DTW domain containing 2184281178342902040Rat
1309935Taf7TATA-box binding protein associated factor 7182945993729462086Rat
1307591Pcdhb14protocadherin beta 14182915787729160683Rat
1306540Spink5serine peptidase inhibitor, Kazal type 5183626445236333143Rat
1310291Snx2sorting nexin 2184660222346643870Rat
1308565Polr2dRNA polymerase II subunit D182341809723425228Rat
1306563Ftmtferritin mitochondrial184575887445760123Rat
1304785Mospd4motile sperm domain containing 4183919051539191332Rat
1304962Lars1leucyl-tRNA synthetase 1183420155534256003Rat
1305908Tnfaip8TNF alpha induced protein 8184318385443299512Rat
1306034Epb41l4aerythrocyte membrane protein band 4.1 like 4A182540546125615392Rat
1305349Pcdhb21protocadherin beta 21182921820929221142Rat
1304762Iws1interacts with SUPT6H, CTD assembly factor 1182369549623737363Rat
1307432Pcdhgb8protocadherin gamma subfamily B, 8182958832729667865Rat
2410Dpysl3dihydropyrimidinase-like 3183537442735480228Rat
1305603Pfdn1prefoldin subunit 1182801414528067148Rat
1306306Atg12autophagy related 12183945224739462424Rat
1308415Sh3rf2SH3 domain containing ring finger 2183404571534148342Rat
1308426Hars2histidyl-tRNA synthetase 2, mitochondrial182839879028408075Rat
1308437Srp19signal recognition particle 19182593173425937974Rat
1310759Pabpc2poly(A) binding protein, cytoplasmic 2183165421831656486Rat
1303288Spink14serine peptidase inhibitor, Kazal type 14183633922336341261Rat
1359352IkIK cytokine182835800428372809Rat
1310459Pou4f3POU class 4 homeobox 3183439020534392797Rat
1311875Cdc25ccell division cycle 25C182633515626356199Rat
1311075Psd2pleckstrin and Sec7 domain containing 2182756491227616674Rat
1303015Commd10COMM domain containing 10183974121939874801Rat
1310707Diaph1diaphanous-related formin 1182966965929769070Rat
1310328Pcdhb22protocadherin beta 22182922302829229132Rat
1311977Slc27a6solute carrier family 27 member 6185204024152099622Rat
1310923Arhgap26Rho GTPase activating protein 26183083580631237945Rat
1311115Ap3s1adaptor related protein complex 3 subunit sigma 1183946272839531622Rat
1311966Rbm27RNA binding motif protein 27183427352734336124Rat
1308364Pcdhb10protocadherin beta 10182911360229123201Rat
1311742Spata24spermatogenesis associated 24182724904727257129Rat
1311748Tcerg1transcription elongation regulator 1183450570834566470Rat
1359165Yipf5Yip1 domain family, member 5183212381432136947Rat
1307915Ammecr1lAMMECR1 like182338611423411177Rat
1311657Sap130Sin3A associated protein 130182324433723345368Rat
1309422Pcdhb7protocadherin beta 7182905504429058488Rat
1310251Mzb1marginal zone B and B1 cell-specific protein182723899927241060Rat
1549775Pcdhb17protocadherin beta 17182919685829201822Rat
1309263Tmco6transmembrane and coiled-coil domains 6182834924828355843Rat
1309475Stard4StAR-related lipid transfer domain containing 4182481468324830024Rat
1310569Myotmyotilin183670524436724849Rat
1306864Snx24sorting nexin 24184667098746826070Rat
1310695Hars1histidyl-tRNA synthetase 1182838164928398699Rat
1307632Isoc1isochorismatase domain containing 1185215879052179206Rat
1308714Trim36tripartite motif-containing 36183885960438912859Rat
1305493Sema6asemaphorin 6A184005062340171954Rat
1309997Ndufa2NADH:ubiquinone oxidoreductase subunit A2182835577428357863Rat
1309608Pcdhb11protocadherin beta 11182912644529130193Rat
1308490Pcdh1protocadherin 1183001169230039679Rat
1308258Ticam2TIR domain containing adaptor molecule 2183928990239311462Rat
1308240Fchsd1FCH and double SH3 domains 1182979389929804533Rat
1308760Pcdhb1protocadherin beta 1182891383528916746Rat
1307139Ercc3ERCC excision repair 3, TFIIH core complex helicase subunit182388361323914326Rat
1310237Dnajc18DnaJ heat shock protein family (Hsp40) member C18182726935027303453Rat
1305324Spry4sprouty RTK signaling antagonist 4183043651330451426Rat
1309230Wdr33WD repeat domain 33182343223323535460Rat
1310295Gypcglycophorin C182416073824193408Rat
1310272Pkd2l2polycystin 2 like 2, transient receptor potential cation channel182600778926042428Rat
1308289Pcdhga10protocadherin gamma subfamily A, 10182957469329667865Rat
2123ApcAPC regulator of WNT signaling pathway182582855825925511Rat
1307654Rit2Ras-like without CAAX 2182256540322921648Rat
1309322Fem1cfem-1 homolog C183923290039258692Rat
1308338Stk32aserine/threonine kinase 32A183525886535374985Rat
1310667Slc25a2solute carrier family 25 member 2182945294329456324Rat
1310676Pcdhga8protocadherin gamma subfamily A, 8182955388229667865Rat
1308912Pcdhb4protocadherin beta 4182901828229020821Rat
1308614Aldh7a1aldehyde dehydrogenase 7 family, member A1185000324250042193Rat
1309283Sncaipsynuclein, alpha interacting protein184620584646343932Rat
1305273Lims2LIM zinc finger domain containing 2182355393723592137Rat
1305276Rell2RELT-like 2182978999629793986Rat
1309895Pcdhb8protocadherin beta 8182906546629067805Rat
1310053Ndfip1Nedd4 family interacting protein 1183026580830316068Rat
1307692Dmxl1Dmx-like 1184299329243163457Rat
1307695Kif20akinesin family member 20A182623029426238780Rat
1564790Scgb3a2secretoglobin, family 3A, member 2183593284035935762Rat
1560482Pcdhgb1protocadherin gamma subfamily B, 1182950173929508024Rat
1561764Sft2d3SFT2 domain containing 3182353710523539305Rat
1303302Nrg2neuregulin 2182761654227798505Rat
1562552Sting1stimulator of interferon response cGAMP interactor 1182733211927338371Rat
1561942Ccdc112coiled-coil domain containing 112183899813939032329Rat
1564428Zfp475zinc finger protein 475184607777846099232Rat
1560341Metap2-ps1methionyl aminopeptidase 2, pseudogene 1184961154849613533Rat
1563159Zfp605l1zinc finger protein 605 like 1182948047429481239Rat
1561039Spmip10sperm microtubule inner protein 10185007061050073942Rat
1359485Ctnna1catenin alpha 1182672824626860911Rat
1311016Gramd2bGRAM domain containing 2B184988401449981955Rat
1562779Lvrnlaeverin183960604739675247Rat
1310484Fam13bfamily with sequence similarity 13, member B182604028526107112Rat
1562266Hmgb1-ps31high-mobility group box 1, pseudogene 31183796889837969438Rat
1563066Rpl17-ps9ribosomal protein L17, pseudogene 9182833082028332264Rat
1549697Pcdhb19protocadherin beta 19182920483829207646Rat
1559856Kctd16potassium channel tetramerization domain containing 16183216623632473067Rat
1559594Prdm6PR/SET domain 6184690411547008482Rat
15611144930474N05Rikl1RIKEN cDNA 4930474N05 gene like 1184061725440619561Rat
1311600Zfp474zinc finger protein 474184604122446071502Rat
1311949Pcdhga5protocadherin gamma subfamily A, 5182951970529667865Rat
1564290Rps27a-ps12ribosomal protein S27a, pseudogene 12182424283624243530Rat
1559742Jakmip2janus kinase and microtubule interacting protein 2183553255235747938Rat
1311806Hspa9heat shock protein family A (Hsp70) member 9182653613126554294Rat
1560343Rps27a-ps13ribosomal protein S27a, pseudogene 13183882928838829837Rat
1303221Ppicpeptidylprolyl isomerase C184684241046855016Rat
1359176Paip2poly(A) binding protein interacting protein 2182719976227218359Rat
1583004Nme5NME/NM23 family member 5182616355826180742Rat
1582966Rpl10-ps8ribosomal protein L10, pseudogene 8185120988651211644Rat
1561153Myo7bmyosin VIIb182358830723669841Rat
1587257Rps2-ps21ribosomal protein S2, pseudogene 21184588133245882216Rat
1587258Pcdhga12protocadherin gamma subfamily A, 12182959266429667865Rat
1587259Pcdhga2protocadherin gamma subfamily A, 2182949395429667865Rat
1585254Vdac1-ps11voltage-dependent anion channel 1, pseudogene 11185000323150005074Rat
1586479Tslpthymic stromal lymphopoietin182444740924454244Rat
1583648Dnd1DND microRNA-mediated repression inhibitor 1182837869228381316Rat
1559536RGD1559536similar to vitellogenin-like 1 precursor183648827536491647Rat
1586463Wdr36WD repeat domain 36182447365724501773Rat
1586403Rps9-ps6ribosomal protein S9, pseudogene 6184981504649815625Rat
1585817Rpl36-ps14ribosomal protein L36, pseudogene183328138633281699Rat
1583423Kdm3blysine demethylase 3B182638085926436701Rat
1561627Ralgdsl5ral guanine nucleotide dissociation stimulator like 5184068333040686500Rat
1562909Dcp2decapping mRNA 2183675073236787067Rat
1563060C18h5orf46similar to human chromosome 5 open reading frame 46183594840235969502Rat
1565779E230025N22RiklRiken cDNA E230025N22 gene like182828598028295204Rat
1565619Cep120centrosomal protein 120184712797947189964Rat
1563132Pcdhb2protocadherin beta 2182900599629008782Rat
1561988MccMCC regulator of WNT signaling pathway183679420637266237Rat
1565632Prrc1proline-rich coiled-coil 1185081254850846273Rat
1359308Marchf3membrane associated ring-CH-type finger 3185023721850389343Rat
1359466Cxxc5CXXC finger protein 5182742759127458579Rat
1584390PotefPOTE ankyrin domain family, member F182362651823629132Rat
1563192Ythdc2YTH N6-methyladenosine RNA binding protein C2183726655937331681Rat
1565083Ralgds-ps5ral guanine nucleotide dissociation stimulator, pseudogene 5184070374040708549Rat
1564574Rps16-ps2ribosomal protein S16, pseudogene 2182748383127500578Rat
1359398Srfbp1serum response factor binding protein 1184592038945945385Rat
1564528Prr16proline rich 16184442434844764796Rat
1565393Fam170afamily with sequence similarity 170, member A184352130443526035Rat
1593851Fam53cfamily with sequence similarity 53, member C182636405026378173Rat
1589785Gpr17G protein-coupled receptor 17182357623223583153Rat
1590761Pcdhga1protocadherin gamma subfamily A, 1182948740429667865Rat
1593785Lrrtm2leucine rich repeat transmembrane neuronal 2182681781626822864Rat
1589576Rnf14ring finger protein 14183013162730155686Rat
1586980Reep2receptor accessory protein 2182643813026447165Rat
1588513Plac8l1PLAC8-like 1183416766734192137Rat
1588514Tkt-ps1transketolase, pseudogene 1183384251033844384Rat
1588516Pcdhgb7protocadherin gamma subfamily B, 7182957912929667868Rat
1588517Ftl1-ps3ferritin light chain 1, pseudogene 3182944979629450237Rat
1588518Hspa8-ps19heat shock protein family A (Hsp70) member 8, pseudogene 19182244294622444872Rat
1585624Gnpda1glucosamine-6-phosphate deaminase 1183016543530177462Rat
1584696Grxcr2glutaredoxin and cysteine rich domain containing 2183398468933998094Rat
1587656Hspa8-ps12heat shock protein family A (Hsp70) member 8, pseudogene 12184746631247468407Rat
1588510Nhp2-ps4NHP2 ribonucleoprotein, pseudogene 4184650591846506926Rat
1588511Taf15-ps1TATA-box binding protein associated factor 15, pseudogene 1184253132642533253Rat
1584707Prelid2PRELI domain containing 2183386993433961320Rat
1583592Zmat2zinc finger, matrin type 2182840960628414241Rat
1590895Blvrb-ps1biliverdin reductase B, pseudogene 1182831033928315448Rat
1590896Kpna1-ps4karyopherin subunit alpha 1, pseudogene 4183276966932776779Rat
1586622Rpl35l1ribosomal protein L35 like 1182315940123159843Rat
1586633Actb-ps5actin, beta, pseudogene 5182312917123129806Rat
1598664Pcdhga3protocadherin gamma subfamily A, 3182949914829667865Rat
1594056Rps3a-ps12ribosomal protein S3a, pseudogene 12184597702545981745Rat
1594845Prob1proline-rich basic protein 1182724251127247355Rat
1596840Pcdhb9protocadherin beta 9182910529829108468Rat
1596855Aldoa-ps4aldolase, fructose-bisphosphate A, pseudogene 4182909563629097081Rat
1594804Ecscrendothelial cell surface expressed chemotaxis and apoptosis regulator182730971127319106Rat
1596746Spink9serine peptidase inhibitor, Kazal type 9183642704336430271Rat
1592565Dctn5-ps2dynactin subunit 5, pseudogene 2184113594941136476Rat
1595054Arl14eplADP ribosylation factor like GTPase 14 effector protein like183967987739711929Rat
1591897Ube2d2ubiquitin-conjugating enzyme E2D 2182736432527406322Rat
1594228Pcdhb20protocadherin beta 20182921187829215272Rat
2300148Ctxn3cortexin 3185093024450940642Rat
2299854C18h5orf63similar to human chromosome 5 open reading frame 63185042407950442172Rat
2312582Pcdhgc5protocadherin gamma subfamily C, 5182964720129666336Rat
2318552Amt-ps1aminomethyltransferase, pseudogene 1184659815746600013Rat
2318109Rpl15l3ribosomal protein L15 like 3184827133648272058Rat
2322847Creb1-ps1cAMP responsive element binding protein 1, pseudogene 1182421228024213310Rat
2322275Mrpl15-ps1mitochondrial ribosomal protein L15, pseudogene 1182913743729139285Rat
2323168Selenok-ps5selenoprotein K, pseudogene 5183377230033772969Rat
2323233Cystm1cysteine-rich transmembrane module containing 1182794586228013509Rat
2323247Timm23-ps2translocase of inner mitochondrial membrane 23, pseudogene 2184720571347268105Rat
2323347Slbplstem-loop binding protein like182635647826363577Rat
2323363Rplp0-ps6ribosomal protein lateral stalk subunit P0, pseudogene 6183366415833665636Rat
2323374IgipIgA-inducing protein182790401827905509Rat
2325445Snora36csmall nucleolar RNA, H/ACA box 36C184595202145952079Rat
2323953Eif1-ps7eukaryotic translation initiation factor 1, pseudogene 7183766285137663207Rat
4109663Cct6a-ps5chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 5183404009034042051Rat
4888598Mir1949microRNA 1949182715559527155691Rat
2324556Eif4ebp3eukaryotic translation initiation factor 4E binding protein 3182826308928268033Rat
4892133Ankhd1ankyrin repeat and KH domain containing 1182816188228260917Rat
5130376Snhg4small nucleolar RNA host gene 4 (non-protein coding)182715843327158669Rat
6495224Srsf3-ps5serine and arginine rich splicing factor 3, pseudogene 5182527432525274813Rat
6493059LOC100911367uncharacterized LOC100911367183123627731252492Rat
6487485Zfp260-ps1zinc finger protein 260, pseudogene 1182851639128519872Rat
6502122Phb1-ps21prohibitin 1, pseudogene 21183613712536137951Rat
6499334Cfl1-ps3cofilin 1, pseudogene 3184987260949875704Rat
6502918Atp5mg-ps5ATP synthase membrane subunit g, pseudogene 5183382700033827309Rat
6499660LOC100910150uncharacterized LOC100910150185084779750876513Rat
6499835LOC100910189uncharacterized LOC100910189185094267750948659Rat
6499927LOC100910201uncharacterized LOC100910201182340323323417959Rat
6498213Ppp4r1-ps1protein phosphatase 4, regulatory subunit 1, pseudogene 1185079171850793723Rat
7524555LOC102556416uncharacterized LOC102556416184850279948514950Rat
7509468LOC102547869uncharacterized LOC102547869183346394133546731Rat
7631690LOC102555171uncharacterized LOC102555171184388823643911640Rat
7613549LOC102549857uncharacterized LOC102549857182587653325878164Rat
7650468LOC102550858uncharacterized LOC102550858182710449427110858Rat
7622590LOC102546966uncharacterized LOC102546966183936327239393454Rat
7652610Rps9-ps7ribosomal protein S9, pseudogene 7183922180339227306Rat
7559217LOC102546310uncharacterized LOC102546310184868416248697398Rat
7623636Hmgb1-ps22high-mobility group box 1, pseudogene 22184277964542780645Rat
7637519Srp19-ps2signal recognition particle 19, pseudogene 2182595080025951722Rat
7570467LOC10254703440S ribosomal protein S23-like183943526439439787Rat
7590894Tex51testis expressed 51182409301524097223Rat
7591891LOC102551758uncharacterized LOC102551758182755724427560273Rat
7557086Envl-ps11MLV-related proviral Env polyprotein-like, pseudogene 11183458617634588127Rat
7600819LOC10255366060S ribosomal protein L32-like184974448249744866Rat
7565214LOC102549443uncharacterized LOC102549443182505782525070704Rat
7553718LOC102546473uncharacterized LOC102546473184878985148824534Rat
7607328LOC102547544uncharacterized LOC102547544185038879350432358Rat
7673459LOC102547870sporulation-specific protein 15-like185104189251063413Rat
7683561LOC102548224uncharacterized LOC102548224185187889351882599Rat
7701056LOC102547511uncharacterized LOC102547511183045148430489138Rat
7748583Rps3-ps1ribosomal protein S3, pseudogene 1185037643650381362Rat
7709716LOC102556109uncharacterized LOC102556109184823383048240312Rat
7711234LOC102546616uncharacterized LOC102546616184890847948921579Rat
9133771LOC103694196uncharacterized LOC103694196182952837729551871Rat
9179805LOC103694262cyclin-dependent kinase 1 pseudogene183390562033906471Rat
9147617LOC103694265glyceraldehyde-3-phosphate dehydrogenase pseudogene184933949349340503Rat
9186345LOC103694223uncharacterized LOC103694223185072736850744395Rat
9166873LOC103694213uncharacterized LOC103694213184423467544237227Rat
9210109LOC103694209transcription intermediary factor 1-beta pseudogene184284505742847327Rat
9214050LOC103694217uncharacterized LOC103694217184769795247701748Rat
9311300LOC103694218glyceraldehyde-3-phosphate dehydrogenase pseudogene184784431047845271Rat
9353936LOC103694952uncharacterized LOC103694952182580088325819754Rat
9355802LOC10369420860S acidic ribosomal protein P0 pseudogene184056169340567823Rat
9272642LOC103694193NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 pseudogene182754707827548571Rat
9367157LOC10369420440S ribosomal protein SA pseudogene183417172934177399Rat
9264054Set-ps8Set nuclear proto-oncogene, pseudogene 8182602222726024458Rat
9389965LOC103694484serine protease inhibitor Kazal-type 11-like183655874536564946Rat
9433650LOC103694950uncharacterized LOC103694950182245930122466852Rat
9445303LOC103694199uncharacterized LOC103694199183364028333664881Rat
11366002LOC108348790uncharacterized LOC108348790184033970740602981Rat
11466718LOC108353288glyceraldehyde-3-phosphate dehydrogenase pseudogene183651762836518734Rat
11357404LOC10834877060S ribosomal protein L26-like 1 pseudogene182916503729171320Rat
11357405Rpl30-ps16ribosomal protein L30, pseudogene 16183621549436215836Rat
11361905LOC108348849glyceraldehyde-3-phosphate dehydrogenase pseudogene183189817631899193Rat
11367741Rpl31l16ribosomal protein L31 like 16183886606938866668Rat
11369277LOC108348772uncharacterized LOC108348772182998329130000247Rat
11451504LOC108348765uncharacterized LOC108348765182636357126366910Rat
11368541Pcdhb15protocadherin beta 15182917886929183847Rat
11441724LOC108348786uncharacterized LOC108348786184027023140285758Rat
11413693LOC108348854uncharacterized LOC108348854184951839349582098Rat
11423870LOC108348793uncharacterized LOC108348793184798243348011398Rat
11376545Pcdhb6lprotocadherin beta-6-like182914601729149871Rat
11409749LOC108348794uncharacterized LOC108348794184841048948492264Rat
11377511LOC10835318040S ribosomal protein S10 pseudogene184090970040923256Rat
11390513Gapdhl4glyceraldehyde-3-phosphate dehydrogenase like 4183993791639939405Rat
11380959LOC108348734ubiquitin-40S ribosomal protein S27a pseudogene183459997134606116Rat
11392115LOC108348736nucleophosmin pseudogene185060255250603044Rat
11519999LOC108353168uncharacterized LOC108353168183503587735042715Rat
11502477LOC10834885040S ribosomal protein S28 pseudogene183385617433856387Rat
11512190LOC108348789uncharacterized LOC108348789184080322240840824Rat
11514929LOC108353164uncharacterized LOC108353164182670856326728317Rat
11486529LOC108348778uncharacterized LOC108348778183544942535484306Rat
11517837LOC10834878060S ribosomal protein L9 pseudogene183884956538858189Rat
11492646Pcdhb16protocadherin beta 16182919226029195669Rat
13831342Ancv1rancient vomeronasal 1 receptor184626203046265018Rat
41105457LOC120098438U6 spliceosomal RNA182525852925258634Rat
41353404LOC120098249uncharacterized LOC120098249184896444848970595Rat
41085620LOC120098168uncharacterized LOC120098168182880800628820392Rat
41087158LOC120098288uncharacterized LOC120098288183555290035589518Rat
41136700LOC120098387small nucleolar RNA SNORA17182423632524236450Rat
41138072LOC120098211uncharacterized LOC120098211184867342048686049Rat
41166828Trnap-agg77transfer RNA proline (anticodon AGG) 77182675270626752780Rat
41167718LOC120098315uncharacterized LOC120098315183074279630779070Rat
41204079LOC120098214uncharacterized LOC120098214184577375145814577Rat
41281389LOC120098134ral guanine nucleotide dissociation stimulator-like184065064740652491Rat
41087642LOC120098326uncharacterized LOC120098326182947274429480429Rat
41139103LOC120098404small nucleolar RNA SNORA26182650802726508142Rat
41168943LOC120098429U6 spliceosomal RNA183383705933837165Rat
41204719LOC120098295uncharacterized LOC120098295184991017449914559Rat
41204778LOC120098421U4 spliceosomal RNA183751742337517585Rat
41250372LOC120098294uncharacterized LOC120098294184318089943183580Rat
41283036LOC120098266uncharacterized LOC120098266182473052024765008Rat
41381474LOC120098132ral guanine nucleotide dissociation stimulator-like184063089840632705Rat
41205980LOC120098204uncharacterized LOC120098204183140744231452476Rat
41278987Dppa4-ps5developmental pluripotency-associated 4, pseudogene 5184260173142602746Rat
41279374LOC120098222uncharacterized LOC120098222182378721123806982Rat
41284742LOC120098166protocadherin alpha-8-like182862606028818723Rat
41325821LOC120098234uncharacterized LOC120098234185172090351728238Rat
41358046LOC120098233uncharacterized LOC120098233184422798944232358Rat
41115189LOC120098364small nucleolar RNA SNORA21182347861323478747Rat
41207243LOC120093100non-histone chromosomal protein HMG-14-like184401685844017148Rat
41360675LOC120098405small nucleolar RNA SNORA76184883879448838929Rat
41360939Rpsa-ps24ribosomal protein SA, pseudogene 24184067805240680420Rat
41173243LOC120098345U7 small nuclear RNA182579781525797876Rat
41208786LOC120098428U6 spliceosomal RNA182635916126359267Rat
41328206Cox7c-ps2Cytochrome c oxidase subunit 7C, pseudogene 2183094480030944969Rat
41362300LOC120098167protocadherin alpha-2-like182858910828818722Rat
41093685LOC120098360small nucleolar RNA SNORA13182540445225404585Rat
41119031LOC120098446U6 spliceosomal RNA185113625651136360Rat
41186981LOC120098313SLC35A4 upstream open reading frame protein-like182828059228282477Rat
41329969LOC120098228uncharacterized LOC120098228182399037924009573Rat
41148153LOC120098267uncharacterized LOC120098267182514858725165025Rat
41211839LOC120098196uncharacterized LOC120098196184404997044050979Rat
41262908LOC120098131ral guanine nucleotide dissociation stimulator-like184066381040665642Rat
41330336LOC120098301protocadherin alpha-7-like182863202828637288Rat
41150048Pcdhac1protocadherin alpha subfamily C, 1182874035328750216Rat
41150328LOC120098334uncharacterized LOC120098334183048918730498974Rat
41150603LOC120098310mucin-6-like182657999326594636Rat
41178527Rpsa-ps26ribosomal protein SA, pseudogene 26184070003640701857Rat
41263179LOC120098347U7 small nuclear RNA183674840836748463Rat
41263870LOC120098199uncharacterized LOC120098199185198367251999725Rat
41365840LOC120098251uncharacterized LOC120098251185010415650125611Rat
41099412Smim33small integral membrane protein 33182732530227327193Rat
41122946Rpl18-ps3ribosomal protein L18, pseudogene 3182280094422801850Rat
41180547LOC120098403small nucleolar RNA SNORA40182953461329534733Rat
41101543LOC120098381small nucleolar RNA SNORA17182425045024250580Rat
41181045LOC120098362small nucleolar RNA SNORA44184055324640553374Rat
41288194LOC120098314ATP synthase F(0) complex subunit C1, mitochondrial-like182885858528862055Rat
41183030LOC120098226uncharacterized LOC120098226184959616449608824Rat
41217121LOC120098432U6 spliceosomal RNA182477719624777302Rat
41217601LOC120098271uncharacterized LOC120098271182585466425860947Rat
41218251LOC120098162uncharacterized LOC120098162182647934526486101Rat
41218349LOC120098119uncharacterized LOC120098119183412359534151088Rat
41070206LOC120098346U1 spliceosomal RNA184573628345736446Rat
41070320LOC120098144uncharacterized LOC120098144182733943827349050Rat
41184218LOC120098355small nucleolar RNA SNORD63182654013726540204Rat
41348796LOC120098148uncharacterized LOC120098148184291366142926697Rat
41348875Skp1-ps1S-phase kinase-associated protein 1, pseudogene 1183684992036861172Rat
41104312LOC120098139ELMO domain-containing protein 2-like183776210637766355Rat
41196987LOC120093049small nucleolar RNA SNORA19183304590833046048Rat
41294005Sec61g-ps6Sec61 translocon subunit gamma, pseudogene 6183405554034064422Rat
41400860LOC120098424U6 spliceosomal RNA184714239647142502Rat
41130071Ppp2r2d-ps1protein phosphatase 2, regulatory subunit B, delta, pseudogene 1183376815333771743Rat
41198857LOC120098153uncharacterized LOC120098153182206823022110779Rat
41272761Mrpl30-ps9mitochondrial ribosomal protein L30, pseudogene 9185058067450581203Rat
41375324Rpl31-ps8ribosomal protein L31, pseudogene 8185120879251209727Rat
41402961LOC120098335uncharacterized LOC120098335183108878631096355Rat
41082659LOC120098371small nucleolar RNA SNORA48184023847240238610Rat
41083422LOC1200983405S ribosomal RNA182647851126478629Rat
41199427LOC120098220uncharacterized LOC120098220182713097927140288Rat
41231671LOC120098435U6 spliceosomal RNA183274616632746268Rat
41320469LOC120098124uncharacterized LOC120098124183024868730258445Rat
41352637LOC120098359small nucleolar RNA SNORA31182920948229209583Rat
41109294LOC120098150uncharacterized LOC120098150185043261950435501Rat
41202102LOC120098269uncharacterized LOC120098269182540307925405115Rat
40972159LOC120098297uncharacterized LOC120098297182419345424207788Rat
40996649LOC120098406U6atac minor spliceosomal RNA182739233927392461Rat
41340234LOC120098216uncharacterized LOC120098216182455839224572223Rat
41340267Arfip2-ps1ADP-ribosylation factor interacting protein 2, pseudogene 1183986744639910623Rat
41340273LOC120098215uncharacterized LOC120098215184024068340242284Rat
40950388LOC120098342U6 spliceosomal RNA183920541339205511Rat
40974709LOC120098445U6 spliceosomal RNA185144715251447238Rat
40975022LOC120098189uncharacterized LOC120098189184316491043169872Rat
40977190LOC120098292uncharacterized LOC120098292184340028343401770Rat
41012624LOC120098361small nucleolar RNA SNORA15184550715845507287Rat
41013740LOC120098370small nucleolar RNA SNORA48185080877250808913Rat
40926502LOC120098325uncharacterized LOC120098325182971035129729530Rat
41014578LOC120098385small nucleolar RNA SNORA17182570042225700556Rat
41015119LOC120098349small nucleolar RNA SNORA62/SNORA6 family182432317024323325Rat
40926626Rpl15-ps11ribosomal protein L15, pseudogene 11184294955342953517Rat
40928311LOC120098293uncharacterized LOC120098293184325026943258124Rat
40955952Trnaa-agc30transfer RNA alanine (anticodon AGC) 30182436171824361789Rat
40929473LOC120098430U6 spliceosomal RNA182673841626738522Rat
40956852LOC120098268uncharacterized LOC120098268182516595525169703Rat
41001054MarcolMARCO like183644871436455171Rat
41002194LOC120098133ral guanine nucleotide dissociation stimulator-like184067038140672225Rat
41003880LOC120098253uncharacterized LOC120098253182294782022955187Rat
40962036LOC120098244uncharacterized LOC120098244183811211938113056Rat
40937555Lgals1-ps2galectin 1, pseudogene 2183967636339676849Rat
41008075LOC120098393small nucleolar RNA SNORA17184971287249712990Rat
40989749LOC120098416U2 spliceosomal RNA182535315825353328Rat
40940619Snora74asmall nucleolar RNA, H/ACA box 74A182715776527157961Rat
40966738LOC120098258cytochrome c oxidase subunit 6C-2-like184012990640156314Rat
40991777LOC120098276uncharacterized LOC120098276184273080342754690Rat
40943294LOC120098229uncharacterized LOC120098229182409705724101106Rat
40969390LOC120098448U6 spliceosomal RNA183013293230133034Rat
40943372Trnap-agg42transfer RNA proline (anticodon AGG) 42183263524732635327Rat
40943959LOC12009830960S ribosomal protein L23a-like182565633325656683Rat
40994721LOC120098126uncharacterized LOC120098126183028433330287973Rat
41312473LOC120098436U6 spliceosomal RNA183509264235092748Rat
41024760LOC120098433U6 spliceosomal RNA183509155335091659Rat
41048330LOC120098350small nucleolar RNA SNORA72182839098328391114Rat
41244098Ube2c-ps3ubiquitin-conjugating enzyme E2C, pseudogene 3183232131632321725Rat
41078696LOC120098181uncharacterized LOC120098181182426174624265324Rat
41316021LOC120098135ral guanine nucleotide dissociation stimulator-like184063747540639294Rat
41051463LOC120098369small nucleolar RNA SNORA48184804589548046039Rat
41319352LOC120098386small nucleolar RNA SNORA17183856641238566541Rat
41135261LOC120098320ral guanine nucleotide dissociation stimulator-like184064370440645714Rat
41054661LOC120098407small nucleolar RNA U13182691710726917200Rat
41255796LOC120098278uncharacterized LOC120098278184641715146443203Rat
41255892LOC120098245uncharacterized LOC120098245183846009938528233Rat
41336072LOC120098343U7 small nuclear RNA182563899525639057Rat
41221436LOC120098149uncharacterized LOC120098149185044203450458966Rat
41318096LOC120098372small nucleolar RNA SNORA48184292275042922894Rat
41059240LOC120098296uncharacterized LOC120098296182420836324212249Rat
41222912LOC120098379small nucleolar RNA SNORA17185210115752101288Rat
41298473LOC120098411U2 spliceosomal RNA182860983728609969Rat
41033816LOC120098117uncharacterized LOC120098117183956142139598719Rat
41034624LOC120098136ral guanine nucleotide dissociation stimulator-like184062384040626145Rat
41300370LOC120098318NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-like183873165238733382Rat
41061823LOC120098263uncharacterized LOC120098263182286871922879737Rat
41302367LOC120098127uncharacterized LOC120098127183035758630383465Rat
41334145LOC120098187uncharacterized LOC120098187182779871627865414Rat
41335071LOC120098337uncharacterized LOC120098337183890209038902853Rat
41303873LOC120098193uncharacterized LOC120098193182451873624530112Rat
41065389LOC120098376small nucleolar RNA SNORA17182307170523071836Rat
41236582Rpl34-ps10ribosomal protein L34, pseudogene 10183028140630281757Rat
41305794LOC120098444U6 spliceosomal RNA183673526536735369Rat
41017586Dppa2l-ps2developmental pluripotency-associated 2 like, pseudogene 2184552460645525235Rat
41067363LOC120098392small nucleolar RNA SNORA17183884195738842096Rat
41044127LOC120098437U6 spliceosomal RNA183435359034353693Rat
41069369LOC120098373small nucleolar RNA SNORA48185228960352289735Rat
41239754LOC120098230uncharacterized LOC120098230184771490447721590Rat
41307513LOC120098354small nucleolar RNA SNORD63182654146926541541Rat
41073968LOC120098137ral guanine nucleotide dissociation stimulator-like184065687640658910Rat
41310031LOC120098420U4 spliceosomal RNA184453511344535283Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10287D18Wox14148182458653424586682Ratregion
10689D18Mit5110183135940831359530Ratregion
34156D18Mgh1124184698893946989053Ratregion
34550D18Mgh9136182479697724797117Ratregion
11337D18Wox9220183586942035869662Ratregion
33577D18Mit1583182730725627307341Ratregion
33766D18Mit4125182653319226533309Ratregion
37524D18Rat63245182754179827542049Ratregion
35463D18Rat34142184770914747709294Ratregion
35491D18Rat22125183041899130419110Ratregion
35495D18Rat35175182802602128026196Ratregion
36846D18Rat16248184750609347506341Ratregion
36914D18Rat18170184671876346718935Ratregion
37028D18Rat19170184754377847544027Ratregion
37608D18Rat53223184050328140503530Ratregion
37738D18Rat57162185229287552293055Ratregion
37908D18Rat67147182301232123012468Ratregion
37910D18Rat71128183007625430076376Ratregion
37958D18Rat68112182696842226968532Ratregion
36444D18Rat21151184262326442623417Ratregion
35009D18Rat20186184891052248910694Ratregion
35020D18Rat36321182768042127680742Ratregion
35815D18Rat23294182612480326125080Ratregion
35863D18Rat17158184941064849410809Ratregion
38146D18Rat50242185146473351464973Ratregion
38350D18Rat38188182206624222066430Ratregion
38366D18Rat59202182805046428050665Ratregion
40592D18Rat132248182473227124732519Ratregion
40326D18Rat97174184032466240325061Ratregion
40326D18Rat97174184032488540325019Ratregion
40326D18Rat97174184032488540325061Ratregion
38850D18Rat56212185100704451007252Ratregion
39294D18Rat51163183024674330246916Ratregion
39308D18Rat73219184999995850000167Ratregion
39326D18Rat66213182476879624769009Ratregion
39444D18Rat96247183962133939621586Ratregion
39550D18Rat100211182960700129607214Ratregion
41520D18Rat104163182206618822066351Ratregion
42423D18Rat151117182629626626296385Ratregion
42424D18Rat150148182812729328127441Ratregion
40782D18Rat99225183055852430558703Ratregion
40842D18Rat101209182654808226548295Ratregion
40944D18Rat92183185151482551515008Ratregion
40994D18Rat94241184948677749487008Ratregion
41116D18Rat95200184883902148839215Ratregion
41770D18Rat137231185167921851679445Ratregion
41904D18Rat140212184853878848539005Ratregion
44155D2Got170278184943684849437126Ratregion
43113D18Rat131132182375890223759034Ratregion
43114D18Rat144237182612907526129313Ratregion
43115D18Rat154146182607439426074530Ratregion
43116D18Rat130236182624292026243137Ratregion
43117D18Rat129221183051257930512804Ratregion
43118D18Rat141220183273218732732390Ratregion
43119D18Rat139235183471021634710448Ratregion
45555D18Got30118183081197230812090Ratregion
45556D18Got32195183122238031222575Ratregion
45557D18Got28203182995867329958876Ratregion
45558D18Got29299182981900529819304Ratregion
45559D18Got27157183243172132431878Ratregion
45560D18Got33153182743100227431155Ratregion
45562D18Got35145182647958426479729Ratregion
45563D18Got34175182632100926321184Ratregion
45566D18Got38191182581653025816721Ratregion
45567D18Got36249182539766525397914Ratregion
45568D18Got37241182463080224631052Ratregion
45569D18Got25143182379182723791970Ratregion
45570D18Got23218182388256523882783Ratregion
45571D18Got24212182250712022507332Ratregion
45572D18Got26275182208726222087539Ratregion
60775D18Wox15110184862221148622305Ratregion
60777D18Wox3214183750336037503574Ratregion
60744D18Rat143214183204049732040709Ratregion
60166D18Got40221184622213246222421Ratregion
60166D18Got40221184622220046222421Ratregion
60167D18Got41228184449758444497811Ratregion
60168D18Got42118184652805446528170Ratregion
60169D18Got43189184598832045988509Ratregion
60170D18Got44203184603914946039354Ratregion
60171D18Got45286184878641248786693Ratregion
60172D18Got46166184830014048300306Ratregion
60173D18Got47276184810171248101988Ratregion
60174D18Got48280184910270649102986Ratregion
60175D18Got49188184998536549985553Ratregion
60176D18Got50156185006877250068930Ratregion
60177D18Got51129185179909551799226Ratregion
60180D18Got80143183489175634891899Ratregion
60181D18Got81181185112270351122884Ratregion
60165D18Got39265184769682047697085Ratregion
66574D18Mco2163183421073134210888Ratregion
66576D18Mco4190183447090034471197Ratregion
66576D18Mco4190183447100534471197Ratregion
66580D18Mco6262184745595347456211Ratregion
66708D18Uia7173184186466141864834Ratregion
67279D18Arb2545183586919435869762Ratregion
67281D18Arb8152184032821940328371Ratregion
1578822D18Chm42158183086264630862802Ratregion
1578842D18Chm53201184348350543483706Ratregion
1630402D18Got116213184387886043879074Ratregion
1630694D18Wox2179182966636829666447Ratregion
1631508D18Got100125183016091330161038Ratregion
1632116D9Got227151182537527225376950Ratregion
1578880D18Chm50170183985146239851634Ratregion
1578906D18Chm1168182349956423499733Ratregion
1578913D18Chm2225182473526124735488Ratregion
1578919D18Chm47188183611312236113310Ratregion
1578933D18Chm57153184856588148566034Ratregion
1578960D18Chm26203182211106422111267Ratregion
1579057D18Chm44227183299174432991975Ratregion
1579057D18Chm44227183299174432992360Ratregion
1579057D18Chm44227183299193432991975Ratregion
1579068D18Chm5242182705686427057108Ratregion
1579069D18Chm56159184696939246969551Ratregion
1579070D18Chm41205182980498229805189Ratregion
1579076D18Chm46230183503598635036216Ratregion
1579097D18Chm43214183198368231983896Ratregion
1579102D18Chm55205184603915746039364Ratregion
1579109D18Chm39224182787087927871099Ratregion
1579149D18Chm3211182557098525571196Ratregion
1579154D18Chm49198183854259838542796Ratregion
1579158D18Chm4167182653805826538225Ratregion
1579164D18Chm45184183387658833876774Ratregion
1579172D18Chm40215182891746228917681Ratregion
1579183D18Chm51175184111994941120128Ratregion
1628145D18Ulb1239183317613033176369Ratregion
1628416D18Got112232184387881543879045Ratregion
1628847D18Got109163183510715335107311Ratregion
1628853D18Got111163182680265426802812Ratregion
1629498D18Got12590184470059144700676Ratregion
1629612D18Got122170183926654039266710Ratregion
1629649D18Wox19144183943327239433416Ratregion
1641397D18Got130183184269528642695471Ratregion
1632643D18Mco8276183317612933176405Ratregion
1633614D18Got121183183935281239352997Ratregion
1635129D18Got124202183949489539495097Ratregion
1635229D18Got117195184269528342695480Ratregion
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5503294UniSTS:237814203185084598750846190Ratregion
5503292UniSTS:237786125182841314628413271Ratregion
5503546PURA__5615856182789148927892345Ratregion
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5502156MARC_6511-6512:996689730:1971182827666828277639Ratregion
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5499795UniSTS:234690229183619942536199654Ratregion
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5499669MARC_7291-7292:992008311:10182353168623533200Ratregion
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5503290UniSTS:237784428182817856528178993Ratregion
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5501055PMC129968P1201184660237246602573Ratregion
5501041PMC125354P3230183439066434390894Ratregion
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5501538STS-Z40841735184392949343930228Ratregion
5501375STS-Z407081135182473204624733183Ratregion
5501546WI-11812143183953137339531516Ratregion
5506159Lrrtm2637182682102826821665Ratregion
5502114MARC_4701-4702:996679619:1324182827598428276704Ratregion
5502134MARC_5405-5406:996690354:163183366430733664370Ratregion
5502259AA959952246182826942628269672Ratregion
5502383RH124673314182966971029670024Ratregion
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5502750ALDOA246182909663929096885Ratregion
Position Markers

Flank 1: (D18Rat38)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21822,066,242 - 22,066,430 (+)MAPPER
Rnor_6.01823,184,227 - 23,184,414NCBI
Rnor_5.01822,914,726 - 22,914,913UniSTS
RGSC_v3.41822,807,203 - 22,807,391RGD
RGSC_v3.41822,807,204 - 22,807,391UniSTS
RGSC_v3.11822,833,850 - 22,834,037RGD
Celera1821,843,993 - 21,844,186UniSTS
RH 3.4 Map18245.6UniSTS
RH 3.4 Map18245.6RGD
RH 2.0 Map18650.3RGD
SHRSP x BN Map1811.4999RGD
FHH x ACI Map1813.91RGD
Peak: (D18Rat57)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21852,292,875 - 52,293,055 (+)MAPPER
Rnor_6.01853,861,252 - 53,861,431NCBI
Rnor_5.01853,100,479 - 53,100,658UniSTS
RGSC_v3.41854,605,732 - 54,605,912RGD
RGSC_v3.41854,605,733 - 54,605,912UniSTS
RGSC_v3.11854,674,164 - 54,674,343RGD
Celera1850,397,794 - 50,397,973UniSTS
RH 3.4 Map18477.92UniSTS
RH 3.4 Map18477.92RGD
RH 2.0 Map18409.0RGD
SHRSP x BN Map1821.6699RGD
FHH x ACI Map1830.38RGD
Flank 2: (D18Rat57)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21852,292,875 - 52,293,055 (+)MAPPER
Rnor_6.01853,861,252 - 53,861,431NCBI
Rnor_5.01853,100,479 - 53,100,658UniSTS
RGSC_v3.41854,605,732 - 54,605,912RGD
RGSC_v3.41854,605,733 - 54,605,912UniSTS
RGSC_v3.11854,674,164 - 54,674,343RGD
Celera1850,397,794 - 50,397,973UniSTS
RH 3.4 Map18477.92UniSTS
RH 3.4 Map18477.92RGD
RH 2.0 Map18409.0RGD
SHRSP x BN Map1821.6699RGD
FHH x ACI Map1830.38RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876357867167Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184698893960377753Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185229287565845095Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: lesions were counted and a caliper was used to determine their maximum and minimum diameter. 1625309
qtl_general WF allele was resposible for multiplicity of poorly differentiated adenocarcinoma 1625309
qtl_general inducing agent: injection of s.c.dimethylhydrazine (20 mg/kg body weight) weekly for 26 weeks 1625309
qtl_general colorectal lesions appeared as spherical or ovoid lesions with a velvety smooth or slightly bossy appearance in the entire length of colon and rectum 1625309
qtl_general number of animals used: 20 ACI/SegHsd, 20 WF/CrCrli, 20 ACI/SegHsd x WF/CrCrli F1 and 138 F2; software used: MAPMAKER/EXP3.0 and ANOVA 1625309