Colcr2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Colcr2 (Colorectal carcinoma resistance QTL 2) Rattus norvegicus

Symbol: Colcr2
Name: Colorectal carcinoma resistance QTL 2
RGD ID: 1641913
Previously known as: rat Colorectal carcinoma resistance 2; rCcr2
Trait: intestine integrity trait   (VT:0010554)    
Measurement Type: colorectal tumor number   (CMO:0001794)    
LOD Score: 6.57
P Value: 0.0197
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2152,266,368 - 22,711,984RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0152,327,877 - 26,288,802RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0152,310,393 - 30,216,604RGDRnor5.0
RGSC_v3.4152,306,220 - 25,410,881RGDRGSC3.4
RGSC_v3.1152,306,221 - 25,426,581RGD
Cross Type: intercross
Strains Crossed: ACI/SegHsd WF/CrCrli 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
WF/CrCrli  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification and chromosome mapping of loci predisposing to colorectal cancer that control Wnt/{beta}-catenin pathway and progression of early lesions in the rat. De Miglio MR, etal., Carcinogenesis. 2007 May 17;.
2. Most lung and colon cancer susceptibility genes are pair-wise linked in mice, humans and rats. Quan L, etal., PLoS One. 2011 Feb 24;6(2):e14727.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1596707Lrmdaleucine rich melanocyte differentiation associated1512230982284764Rat
1312018Zfp503zinc finger protein 5031523130602316848Rat
41024592Trnap-agg44transfer RNA proline (anticodon AGG) 441524273042427384Rat
1306581Comtd1catechol-O-methyltransferase domain containing 11524597832462895Rat
621576Vdac2voltage-dependent anion channel 21524628772476802Rat
1306447Samd8sterile alpha motif domain containing 81525121042562368Rat
163748611Dusp13adual specificity phosphatase 13A1525597632562379Rat
1359712Dusp13bdual specificity phosphatase 13B1525674322575105Rat
11400930LOC108352868uncharacterized LOC1083528681525712732574656Rat
41134379LOC120096899uncharacterized LOC1200968991525842242598079Rat
1310229Dusp29dual specificity phosphatase 291525934732634019Rat
11516251LOC108352871uncharacterized LOC1083528711526081792622047Rat
1566399Kat6blysine acetyltransferase 6B1526388852811977Rat
7665573LOC102553460uncharacterized LOC1025534601528102542817573Rat
41269057LOC120097201U6 spliceosomal RNA1528600662860170Rat
2046Adkadenosine kinase1528632413246453Rat
41309143Trnad-auc2transfer RNA aspartic acid (anticodon AUC) 21528930482893120Rat
41316132LOC120097065uncharacterized LOC1200970651530195713026169Rat
41374571LOC120097066uncharacterized LOC1200970661531916033201561Rat
620417Ap3m1adaptor related protein complex 3 subunit mu 11532466163264846Rat
1311217Vclvinculin1532657763355586Rat
41022418LOC120096900uncharacterized LOC1200969001534328443458985Rat
3343Plauplasminogen activator, urokinase1534562303462732Rat
11428213LOC108352872uncharacterized LOC1083528721534866003493850Rat
621802Camk2gcalcium/calmodulin-dependent protein kinase II gamma1535040173563050Rat
1304700Ndst2N-deacetylase and N-sulfotransferase 21535635153573801Rat
1309414Zswim8zinc finger, SWIM-type containing 81535737803589501Rat
1307134Chchd1coiled-coil-helix-coiled-coil-helix domain containing 11535927193593901Rat
41393404LOC120097193U6 spliceosomal RNA1535952003595304Rat
628731Fut11fucosyltransferase 111535987683602328Rat
1597739Sec24cSEC24 homolog C, COPII coat complex component1536024603624524Rat
41074932LOC120097226small nucleolar RNA SNORA511536308323630944Rat
41031110LOC120097227small nucleolar RNA SNORA511536310553631182Rat
1565434Synpo2lsynaptopodin 2-like1536319743641429Rat
1561064Myoz1myozenin 11536443333651584Rat
1303206Usp54ubiquitin specific peptidase 541536593453757703Rat
708564Ncl-ps1nucleolin, pseudogene 11536981753699885Rat
41127141Trnat-agu29transfer RNA threonine (anticodon AGU) 291537040543704134Rat
41031107LOC120097214small nucleolar RNA SNORA681537261813726308Rat
9190083LOC103693236uncharacterized LOC1036932361537510993760739Rat
3383Ppp3cbprotein phosphatase 3 catalytic subunit beta1537599503804976Rat
1309408Mss51MSS51 mitochondrial translational activator1538052403819385Rat
7597681LOC10255404760S ribosomal protein L15-like1538101313815381Rat
621173Anxa7annexin A71538217983849659Rat
1307577Cfap70cilia and flagella associated protein 701538523813918036Rat
1582995Mrps16mitochondrial ribosomal protein S161539186213921024Rat
1305009Dnajc9DnaJ heat shock protein family (Hsp40) member C91539238423928118Rat
1359592Fam149b1family with sequence similarity 149, member B11539291903967140Rat
1565023Ecdecdysoneless cell cycle regulator1539672093998713Rat
1583507Nsdhl-ps1NAD(P) dependent steroid dehydrogenase-like, pseudogene 11539861353987351Rat
1592767Nudt13nudix hydrolase 131540017874022404Rat
1582911Kcnk16potassium two pore domain channel subfamily K member 161540425064049652Rat
41053768LOC120097210small nucleolar RNA SNORA701541069304107058Rat
1564985Kcnk5potassium two pore domain channel subfamily K member 51541224424164718Rat
1310877Saysd1SAYSVFN motif domain containing 11542241294229798Rat
69268Gng2G protein subunit gamma 21543160384416918Rat
7521957LOC102554918uncharacterized LOC1025549181544195734435636Rat
1304704RtrafRNA transcription, translation and transport factor1544472434457973Rat
1311685Nid2nidogen 21544580824513808Rat
7722234LOC102555049uncharacterized LOC1025550491545242654540169Rat
1597009Galnt12-ps5polypeptide N-acetylgalactosaminyltransferase 12, pseudogene 51545835194585102Rat
7671509LOC102550466disks large homolog 5-like1545894294597451Rat
40999750LOC120096905uncharacterized LOC1200969051545986274605374Rat
1359198Spetex2gSpetex-2G protein1546155544619166Rat
7696982Dlg5l3discs large MAGUK scaffold protein 5 like 31546194034636584Rat
1359170Glrx-ps4glutaredoxin, pseudogene 41546199954621168Rat
41252205LOC120096904small integral membrane protein 14-like1546411874641936Rat
7657919LOC102547212disks large homolog 5-like1546810894689046Rat
41210980LOC120096907small integral membrane protein 14-like1547008134704146Rat
40987903Spetex2cl1Spetex-2C protein like 11547141424717972Rat
41177192Glrx-ps3glutaredoxin, pseudogene 31547494164749935Rat
41403980LOC120096908small integral membrane protein 14-like1547679654768535Rat
1359494Spetex2cSpetex-2C protein1547792514781549Rat
1359714Spetex2eSpetex-2E protein1548136444816793Rat
2319102Egln1-ps3egl-9 family hypoxia-inducible factor 1, pseudogene 31548264994842497Rat
41328343LOC120097220small nucleolar RNA SNORA241548601454860243Rat
2318942Pank3-ps1pantothenate kinase 3, pseudogene 11548702064871495Rat
1595829Psmb3-ps8proteasome 20S subunit beta 3, pseudogene 81548944534895150Rat
1595828Tufm-ps2Tu translation elongation factor, mitochondrial, pseudogene 21549835594984869Rat
1359606Zfp385dzinc finger protein 385D1550401825849975Rat
41197090Sft2d2-ps1SFT2 domain containing 2, pseudogene 11552606205268901Rat
41260589LOC120097262small nucleolar RNA SNORA171558221115822212Rat
41103035LOC120097101uncharacterized LOC1200971011559111515916278Rat
1598366Hspd1-ps20heat shock protein family D (Hsp60) member 1, pseudogene 201564968316527540Rat
11457846LOC108353031histone H2A.Z pseudogene1568121526812815Rat
40965976LOC120096910uncharacterized LOC1200969101569721316980187Rat
1305644Ube2e2ubiquitin-conjugating enzyme E2E 21569802417257912Rat
9417893LOC103693837aurora kinase A pseudogene1570202857118544Rat
41110787LOC120097263small nucleolar RNA SNORA171570441837044304Rat
1592934Rpl36al-ps4ribosomal protein L36A, pseudogene 41572066557207058Rat
41050348LOC120096911uncharacterized LOC1200969111572921747302604Rat
7524474LOC102552344uncharacterized LOC1025523441573741557382660Rat
40960216Trnas-aga36transfer RNA serine (anticodon AGA) 361573857717385851Rat
2324438Ube2e1ubiquitin-conjugating enzyme E2E 11574397517493410Rat
1308560Nkiras1NFKB inhibitor interacting Ras-like 11574935317503758Rat
621181Rpl15ribosomal protein L151575038837507166Rat
628828Nr1d2nuclear receptor subfamily 1, group D, member 21575242577550553Rat
1595877Gapdhl7glyceraldehyde-3-phosphate dehydrogenase like 71576251277626023Rat
3858Thrbthyroid hormone receptor beta1576851808031920Rat
41298897LOC120096915uncharacterized LOC1200969151576899177697161Rat
40957616LOC120096913uncharacterized LOC1200969131577152317720754Rat
41394597Eif1-ps2eukaryotic translation initiation factor 1, pseudogene 21577382367738610Rat
41228839LOC120096912uncharacterized LOC1200969121577454217748708Rat
41320468Bod1-ps1biorientation of chromosomes in cell division 1, pseudogene 11578328067837187Rat
41279998LOC120096914uncharacterized LOC1200969141580317598034482Rat
11464169LOC108352884uncharacterized LOC1083528841581344868216703Rat
6503573Ptbp1-ps1polypyrimidine tract binding protein 1, pseudogene 11582260288227163Rat
3535Rarbretinoic acid receptor, beta1587005339051288Rat
1586156Top2bDNA topoisomerase II beta1590513409111721Rat
1308518Ngly1N-glycanase 11591537389210228Rat
1311092Oxsm3-oxoacyl-ACP synthase, mitochondrial1592104439215852Rat
41081949LOC120097102uncharacterized LOC1200971021592464299253126Rat
1583242Rpl4-ps5ribosomal protein L4, pseudogene 51592947579301801Rat
1559461Rps7l1ribosomal protein S7 like 11593735749374184Rat
40988631LOC120097274U6atac minor spliceosomal RNA1594901659490290Rat
1596540Eno1-ps5enolase 1, pseudogene 51595729779577746Rat
41124771LOC120096918uncharacterized LOC1200969181595783619584059Rat
41045805LOC120096919uncharacterized LOC1200969191597155349725294Rat
41195611LOC120097233small nucleolar RNA SNORA171597954399795570Rat
11406144LOC108352885uncharacterized LOC1083528851599006089951775Rat
1311897Lrrc3bleucine rich repeat containing 3B15997358010050891Rat
1597007Ppp2r5c-ps1protein phosphatase 2, regulatory subunit B', gamma, pseudogene 1151006801610073843Rat
41022636LOC120097104uncharacterized LOC120097104151016981410173040Rat
7581571LOC102556466uncharacterized LOC102556466151028646810289900Rat
6500331Hdac1-ps20Histone deacetylase 1, pseudogene 20151036501710366490Rat
1564342Nek10NIMA-related kinase 10151038706310564177Rat
1591965Tcea1l1transcription elongation factor A1-like 1151040114110402046Rat
9400383LOC103693313acanthoscurrin-2-like151058033610580689Rat
621208Slc4a7solute carrier family 4 member 7151058530710664780Rat
41286265LOC120097272small nucleolar RNA SNORA40151069802510698155Rat
41044478LOC120097105uncharacterized LOC120097105151077980110788053Rat
2318900Apool-ps1apolipoprotein O-like, pseudogene 1151081658110817906Rat
1333947Or2t35olfactory receptor family 2 subfamily T member 35151086334710864315Rat
41349636LOC120097215small nucleolar RNA SNORD44151087152810871588Rat
1334361Or2t1olfactory receptor family 2 subfamily T member 1151096056210961515Rat
7627503Eno1-ps18enolase 1, pseudogene 18151098481711044002Rat
1334102Or2t6olfactory receptor family 2 subfamily T member 6151106319211064139Rat
735127Psmd6proteasome 26S subunit, non-ATPase 6151110217411112180Rat
1562692Atxn7ataxin 7151111736011262818Rat
41138750Ndufa5-ps1NADH:ubiquinone oxidoreductase subunit A5, pseudogene 1151115579611167791Rat
41276913LOC120097304U6 spliceosomal RNA151124344211243547Rat
1305475Thoc7THO complex subunit 7151126236211277200Rat
7634115C15h3orf49similar to human chromosome 3 open reading frame 49151127719211295799Rat
1565725Cdhr18cadherin related family member 18151130000511379464Rat
41310164LOC120097202U6 spliceosomal RNA151135420611354306Rat
6498839LOC100910341U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like151140543311405971Rat
1559573Prelid1-ps7PRELI domain containing 1, pseudogene 7151146171311462755Rat
1562356Sntnsentan, cilia apical structure protein151151256311525608Rat
41312396LOC120097235small nucleolar RNA SNORA17151154220211542338Rat
708366Synprsynaptoporin151157337311900255Rat
41137655Rps20-ps5ribosomal protein S20, pseudogene 5151182025511820588Rat
41230408Oaz1-ps2ornithine decarboxylase antizyme 1, pseudogene 2151183818211895195Rat
7658030LOC102552767uncharacterized LOC102552767151190605711938031Rat
41242226LOC120097249small nucleolar RNA SNORA17151193136711931493Rat
708573Cadpscalcium dependent secretion activator151228980312742786Rat
41301046Hdac1-ps3Histone deacetylase 1, pseudogene 3151244245712472332Rat
41063318Rps27-ps4ribosomal protein S27, pseudogene 4151251420612520414Rat
1311068Fezf2Fez family zinc finger 2151276861412777554Rat
40983216LOC120097240small nucleolar RNA SNORA17151278592012786048Rat
1306063Cep15centrosomal protein 15151281515912835115Rat
9091071LOC103693281activated RNA polymerase II transcriptional coactivator p15 pseudogene151285846512858878Rat
620774Ptprgprotein tyrosine phosphatase, receptor type, G151287170613552186Rat
41311017LOC120097096uncharacterized LOC120097096151343484313450359Rat
41244993Rpl10-ps12ribosomal protein L10, pseudogene 12151361394313614586Rat
40986092LOC120097238small nucleolar RNA SNORA17151377431913774450Rat
1563739Tpt1-ps2tumor protein, translationally-controlled 1 pseudogene 2151380038713801133Rat
41164091LOC120096925uncharacterized LOC120096925151388523713892043Rat
620448Fhitfragile histidine triad diadenosine triphosphatase151393502915442620Rat
41352429Wbp11-ps9WW domain binding protein 11, pseudogene 9151405459214056448Rat
40976044Rpl12-ps11ribosomal protein L12, pseudogene 11151474028314744276Rat
41157198LOC120097099uncharacterized LOC120097099151479347414820529Rat
41248163LOC120097098uncharacterized LOC120097098151516073515164587Rat
41112515LOC120097100uncharacterized LOC120097100151522076115222162Rat
9318927LOC103693285uncharacterized LOC103693285151524772515256275Rat
41193585LOC120096926uncharacterized LOC120096926151556233615586644Rat
41083093LOC120097307U6 spliceosomal RNA151561831815618421Rat
41130487LOC120097127uncharacterized LOC120097127151585795115862958Rat
41074142Tex264-ps1testis expressed 264, pseudogene 1151590361215907788Rat
11511431LOC108352892uncharacterized LOC108352892151591094915957267Rat
41278283LOC120096927uncharacterized LOC120096927151622563916231061Rat
1359720Cfap20dcCFAP20 domain containing151623124816476978Rat
11425507LOC108353016uncharacterized LOC108353016151623342816247909Rat
41365081LOC120097253small nucleolar RNA SNORA17151641693016417062Rat
7712935LOC102548458uncharacterized LOC102548458151650831016527903Rat
1305512Fam3dFAM3 metabolism regulating signaling molecule D151653888116574468Rat
41377260LOC120096928uncharacterized LOC120096928151654171016603322Rat
1306327Fam107afamily with sequence similarity 107, member A151660836216630398Rat
41216872LOC120096930uncharacterized LOC120096930151663102716644852Rat
628684Acox2acyl-CoA oxidase 2151666058416692160Rat
1308208Kctd6potassium channel tetramerization domain containing 6151669529716712460Rat
9105567Hspe1-ps2heat shock protein family E (Hsp10) member 1, pseudogene 2151672127416721897Rat
1359146Pdhbpyruvate dehydrogenase E1 subunit beta151675256116758503Rat
727819PxkPX domain containing serine/threonine kinase151675985716828452Rat
1305436Rpp14ribonuclease P/MRP subunit p14151683779616847970Rat
1359323Abhd6abhydrolase domain containing 6, acylglycerol lipase151685974016907094Rat
620669Dnase1l3deoxyribonuclease 1L3151692233516948322Rat
9449921LOC103693818uncharacterized LOC103693818151695304616973707Rat
11505803Atp6v1fnblATP6V1F neighbor like151695412816958243Rat
1311915Flnbfilamin B151696199917095059Rat
1591918Rps19-ps15ribosomal protein S19, pseudogene 15151711959617120032Rat
2323175PotehPOTE ankyrin domain family member H151713158217219924Rat
1598365Utp4-ps1UTP4 small subunit processome component, pseudogene 1151721924717221380Rat
7649706Rfc5-ps2replication factor C subunit 5, pseudogene 2151722510417226112Rat
2323018Ube2g1l1ubiquitin-conjugating enzyme E2G 1 like 1151726383817266304Rat
40995200LOC120096933uncharacterized LOC120096933151730729017373486Rat
619707Ptgdrprostaglandin D2 receptor151736030417367679Rat
1589068Galnt12-ps4polypeptide N-acetylgalactosaminyltransferase 12, pseudogene 4151756320417564802Rat
41376748LOC120096936disks large homolog 5-like151761346617621079Rat
11453876LOC108349347disks large homolog 5-like151763582417643786Rat
1590180Rrs1-ps14ribosome biogenesis regulator 1 homolog, pseudogene 14151765358817662311Rat
7619317LOC102554774disks large homolog 5-like151766257517669537Rat
41098740LOC120096937disks large homolog 5-like151767857017691607Rat
11474029Glrxl1glutaredoxin like 1151769492517700549Rat
1359579Spetex2fSpetex-2F protein151771631517720203Rat
7600849Glrx-ps16glutaredoxin, pseudogene 16151772928117733791Rat
7677163LOC102550211disks large homolog 5-like151773705717742754Rat
41329473LOC120093102disks large homolog 5-like151775971917791248Rat
41010761Galnt12-ps3polypeptide N-acetylgalactosaminyltransferase 12, pseudogene 3151776807117779005Rat
41174358LOC120093146disks large homolog 5-like151788838917895433Rat
41080219LOC120096939disks large homolog 5-like151790761717914650Rat
9305593Dlg5l9discs large MAGUK scaffold protein 5 like 9151792943017948524Rat
40980376LOC120096938disks large homolog 5-like151795423417961479Rat
41113905Rrs1-ps5ribosome biogenesis regulator 1 homolog, pseudogene 5151796175917969281Rat
41118835LOC120093162disks large homolog 5-like151797642117983758Rat
1561032Dlgap5l2DLG associated protein 5 like 2151802953118036669Rat
6494161Galnt12-ps2polypeptide N-acetylgalactosaminyltransferase 12, pseudogene 2151804621018048369Rat
41301532LOC120096940disks large homolog 5-like151805250718060069Rat
1565108Ptgdrl1prostaglandin D2 receptor-like 1151807235718081452Rat
41276740Snip1-ps2Smad nuclear interacting protein 1, pseudogene 2151815466818167161Rat
41383513LOC120096941uncharacterized LOC120096941151819167718196835Rat
620020Ptger2prostaglandin E receptor 2151821501318228714Rat
41081032LOC120096942uncharacterized LOC120096942151822224318227421Rat
2320523Rps10l6ribosomal protein S10 like 6151830828718309139Rat
1306755Txndc16thioredoxin domain containing 16151835168818425833Rat
1563070Gpr137cG protein-coupled receptor 137C151842593918492588Rat
41118851Rcor2-ps1REST corepressor 2, pseudogene 1151848050018484489Rat
621713Ero1aendoplasmic reticulum oxidoreductase 1 alpha151849503718530440Rat
1308825Psmc6proteasome 26S subunit, ATPase 6151854258518564057Rat
1594806Styxserine/threonine/tyrosine interacting protein151856521418595797Rat
6907482LOC689246farnesyl diphosphate synthase pseudogene151858062818581731Rat
1563144Gnpnat1glucosamine-phosphate N-acetyltransferase 1151859618018608854Rat
1311799Fermt2FERM domain containing kindlin 2151868292718751959Rat
41249242LOC120097298U6 spliceosomal RNA151870910218709208Rat
11412987Rps29-ps19ribosomal protein S29, pseudogene 19151879712018797499Rat
11410863LOC108352894uncharacterized LOC108352894151881434118824385Rat
1308576Ddhd1DDHD domain containing 1151882438918891036Rat
11519152LOC108352895uncharacterized LOC108352895151889116418893398Rat
7523542LOC102547310uncharacterized LOC102547310151892894018969883Rat
41379851LOC120097288U4 spliceosomal RNA151903861319038748Rat
41228660LOC120097169uncharacterized LOC120097169151908453319086461Rat
41230819LOC120096947uncharacterized LOC120096947151909478719185315Rat
40932172LOC120096948uncharacterized LOC120096948151912171519145141Rat
41360619LOC120097285U2 spliceosomal RNA151942710919427295Rat
11391179LOC108352896uncharacterized LOC108352896151953582919559379Rat
2213Bmp4bone morphogenetic protein 4151961853819633494Rat
7548933LOC102548186uncharacterized LOC102548186151963358419644931Rat
41325057LOC120096949uncharacterized LOC120096949151968249419694414Rat
41162727LOC120096951uncharacterized LOC120096951151969718219706733Rat
9134621Mrps16-ps2mitochondrial ribosomal protein S16, pseudogene 2151977187819772280Rat
1307781Cdkn3cyclin-dependent kinase inhibitor 3152002252220033948Rat
1312030Cnih1cornichon family member 1152003788520049857Rat
70910Gmfbglia maturation factor, beta152006992320081005Rat
620803Cgrrf1cell growth regulator with ring finger domain 1152008856420109042Rat
9312086Rpl39-ps11ribosomal protein L39, pseudogene 11152011877820119125Rat
7744850LOC102548367uncharacterized LOC102548367152012944820136437Rat
1310361Samd4asterile alpha motif domain containing 4A152013599420352131Rat
61992Gch1GTP cyclohydrolase 1152040426720437727Rat
7580218LOC102548428uncharacterized LOC102548428152045400620462954Rat
1310200Wdhd1WD repeat and HMG-box DNA binding protein 1152047831020523106Rat
41089018LOC120097314U6 spliceosomal RNA152051614620516249Rat
1306503Socs4suppressor of cytokine signaling 4152052340620537889Rat
1311455Mapk1ip1lmitogen-activated protein kinase 1 interacting protein 1-like152054504320571466Rat
41003493LOC120097123uncharacterized LOC120097123152058538620587055Rat
1564783Tpt1-ps8tumor protein, translationally-controlled 1 pseudogene 8152060891620610628Rat
69356Lgals3galectin 3152062008320632019Rat
1311247Dlgap5DLG associated protein 5152063396420664569Rat
41200698LOC120096955uncharacterized LOC120096955152069380220712131Rat
1310108Fbxo34F-box protein 34152071939520787905Rat
1304610Atg14autophagy related 14152079575020827113Rat
11519001LOC108352900uncharacterized LOC108352900152083051920850418Rat
41303421Atp5pb-ps3ATP synthase peripheral stalk-membrane subunit b, pseudogene 3152088295920907232Rat
1308719Ktn1kinectin 1152091366521002588Rat
41229534LOC120097197U6 spliceosomal RNA152092278920922889Rat
41066627LOC1200971925S ribosomal RNA152104235821042476Rat
41060763LOC120096956uncharacterized LOC120096956152123525221238947Rat
41351628LOC120097291U1 spliceosomal RNA152123975621239919Rat
1565884Peli2pellino E3 ubiquitin protein ligase family member 2152139326221537737Rat
7670321LOC102554413uncharacterized LOC102554413152159278421599148Rat
41244735LOC120097124uncharacterized LOC120097124152169280721705255Rat
1562018Tmem260transmembrane protein 260152173411921804049Rat
7731716LOC102554609uncharacterized LOC102554609152186802821875582Rat
41121801LOC120097203U6 spliceosomal RNA152193817321938279Rat
1305705Otx2orthodenticle homeobox 2152194223321953034Rat
41082665LOC120097200U6 spliceosomal RNA152206041822060529Rat
7618438Hdac1-ps14Histone deacetylase 1, pseudogene 14152206126022063592Rat
41301128Brix1-ps2biogenesis of ribosomes BRX1, pseudogene 2152215956622162239Rat
708408Exoc5exocyst complex component 5152231068222355695Rat
1308087Ap5m1adaptor related protein complex 5 subunit mu 1152235547822385222Rat
1559923Naa30N(alpha)-acetyltransferase 30, NatC catalytic subunit152245491422474789Rat
7568824Ccdc198coiled-coil domain containing 198152250018122527011Rat
1561109Slc35f4solute carrier family 35, member F4152257226622833646Rat
7591538LOC102556222uncharacterized LOC102556222152266220922687589Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34453D15Mgh7140151672552816725660Ratregion
11416D15Wox52151576883547688569Ratregion
33614D15Mit2119151448116514481294Ratregion
33713D15Mit3201151736289717363086Ratregion
33713D15Mit3201151807856318078771Ratregion
36313D15Rat5205151985656619856776Ratregion
35350D15Rat3143152008692420087067Ratregion
35417D15Rat130166152192574621925910Ratregion
37060D15Rat2172151035505410355226Ratregion
37106D15Rat31211152271177322711984Ratregion
37694D15Rat572021577820307782228Ratregion
37702D15Rat66194151918667419186868Ratregion
36516D15Rat12801574119157412193Ratregion
38114D1Rat172247152214124322141514Ratregion
38200D15Rat54225151249614112496364Ratregion
38206D15Rat62201152084273020842925Ratregion
40172D15Rat111156152120826021208412Ratregion
40226D15Rat761331577726497772785Ratregion
40358D15Rat110126151222293912223065Ratregion
38922D15Rat381061522663682266460Ratregion
39014D15Rat691421596363069636454Ratregion
39438D15Rat772331543748054375038Ratregion
43033D15Rat1342301523969332397155Ratregion
43036D15Rat137147151234543012345585Ratregion
43037D15Rat136200151292960312929785Ratregion
43038D15Rat168249151453751514537769Ratregion
42400D15Rat160236152238599022386232Ratregion
42401D15Rat161228152244268622442922Ratregion
41840D15Rat138202151688757316887753Ratregion
45217D15Got11311538309193831049Ratregion
45219D15Got21631539966543996817Ratregion
45224D15Wox11301526732642673438Ratregion
45229D15Got22150151214249612142646Ratregion
45230D15Got14214151188645511886667Ratregion
45232D15Got17190151209710112097291Ratregion
45233D15Got16222151206762712068146Ratregion
45233D15Got16222151206792412068146Ratregion
45234D15Got212711590249429025213Ratregion
45235D15Got102321554984185498646Ratregion
45236D15Got112801571821017182382Ratregion
45238D15Got122421585250798525325Ratregion
45239D15Got13186151600275416002937Ratregion
60086D15Got105101151736288817362989Ratregion
60086D15Got105101151807870118078780Ratregion
60089D15Got191801568079406808120Ratregion
60090D15Got201641541588704159034Ratregion
60092D15Got2495151877111018771207Ratregion
60093D15Got26157151835347218353629Ratregion
60094D15Got29296151971114519711443Ratregion
60095D15Got30167152015039820150565Ratregion
45240D15Got18127151343443813434565Ratregion
45241D15Got25184151861397418614158Ratregion
45242D15Got27190151937729919377486Ratregion
625777D15Got15232151073889010739122Ratregion
62462D15Uia6308152104770421048004Ratregion
66454D15Uia7199151608473316084930Ratregion
66455D15Uia8232152060884920609081Ratregion
66541D15Mco112901525253642525602Ratregion
66542D15Mco12240152133858821338835Ratregion
66546D15Mco161401562569086257057Ratregion
66637D15Mco41531555316565531813Ratregion
66646D15Mco91501579305997930756Ratregion
1629362D15Got2001331567327876732920Ratregion
1639050D15Got239252151877109618771350Ratregion
1639176D15Got240287151031349910313781Ratregion
1639355D15Kyo1145151352062413520771Ratregion
1640972D15Wox11262152044022320440482Ratregion
1632638D15Ulb1128151966061819660746Ratregion
1632676D15Ulb2122151966061819660740Ratregion
1640546D15Got2422001540226894022889Ratregion
1635523D15Got201117151062187710621994Ratregion
1633896D15Got202224152215677522156997Ratregion
1634645D15Wox7111152161434521614456Ratregion
7241165D4Kini111566995986699887Ratregion
7192348Bmp4394151961952619620924Ratregion
5035765RH25245132152100223321002365Ratregion
5035869PMC263842P1209152194434921944558Ratregion
5035877PMC27204P11821576860607686242Ratregion
5035903PMC304098P1211152194434721944558Ratregion
5036073Adk1391528637312863870Ratregion
5036599AU0485561611534611333461294Ratregion
5036861AU049441219151601845516018673Ratregion
5036861AU049441219151601845516018674Ratregion
5035568VCL2011532701643270365Ratregion
5031250PMC113761P16161589057068906322Ratregion
5033893RH140518148151040314310403336Ratregion
5025956RH1303451981535960073596205Ratregion
5026028RH130631195152056781820568013Ratregion
5028687RH941331551525746652574820Ratregion
7206158Bmp4114151962097619621090Ratregion
7206216Ndst23471535719933572340Ratregion
7206250Gmfb714152006995720070671Ratregion
5031398PMC156609P198151962214719622245Ratregion
5031678AU047515157151475132814751483Ratregion
5034181RH141675219152056089920561118Ratregion
5029045RH1433081691539275833927752Ratregion
5029067RH143391100151853031018530410Ratregion
5029205RH1439151681539211633921331Ratregion
5034596BF416962152151642694516427097Ratregion
5026642RH1329881821539403783940560Ratregion
5032171RH126115227152079577020795997Ratregion
5034798AI231767187151355805713558244Ratregion
5035064D3S39932481572576607257908Ratregion
5026962RH1341991821573023327302514Ratregion
5027046RH134525216151127542611276663Ratregion
5029621BF386303190152021486920215061Ratregion
5035422BQ208140163151913152319131686Ratregion
5035428BM3876331521583776638377815Ratregion
5034906AA9459001381544582264458364Ratregion
5029993BF388496171151262491312625084Ratregion
5027471AW32245596152247446722474563Ratregion
5033171RH1378442341551062705106504Ratregion
5025120BB256399104152194322821943332Ratregion
5025202RH127408180151675821016758390Ratregion
5027817RH948591231528638572863980Ratregion
502786917.MMHAP37FRF8.seq230151073154610731776Ratregion
5030475BE106656150151389168813891838Ratregion
5025432RH128294199152040257220402771Ratregion
5030703BF4108801601536209783621138Ratregion
5025556RH128777184152251299022513174Ratregion
5028163D14Mit129139151961875819618897Ratregion
5030795BE1201301561544153774415533Ratregion
5025832RH129861215152078683120787046Ratregion
5028559AA96055597151868305818683155Ratregion
5055087RH143598103151283060812830711Ratregion
5051264RH134534211151868303518683246Ratregion
5056003RH144127101151544235815442459Ratregion
5056539RH144437138151849000018490138Ratregion
5056737RH1445511421579985797998721Ratregion
5057083AA859789180152003222520033856Ratregion
5054145RH143056221151684250016842721Ratregion
5057384AA8754382251535738193574044Ratregion
5057530BE095473166152008043620080602Ratregion
5052135RH94860187151961874919618960Ratregion
5055273RH143706194152003829620038490Ratregion
5054825RH143447287152092781120928098Ratregion
5058648BE102252174151354817713548351Ratregion
5056069RH1441651751535016723501847Ratregion
5055099RH143605132152056808520568217Ratregion
5056227RH144256105151964469819644803Ratregion
5056951RH144674159151400523714005392Ratregion
5052759RH1422571581550403015040459Ratregion
5058900BF387204190151157056011570750Ratregion
5058990BE102691177152123940621239583Ratregion
5052951RH142368199151669537916695578Ratregion
5060034BF388306165151685785116858016Ratregion
5058218BF419007105151889326018893365Ratregion
5058328AI136647218152100228821002507Ratregion
5058336BF4194562421540391604039402Ratregion
5049858RH1337221831590509119051094Ratregion
5050210RH133925180151281645912816639Ratregion
5050424RH134048182151237222812372410Ratregion
5053241RH1425351251539555003955625Ratregion
5050806RH1342692191575495527549771Ratregion
5051056RH134413192151657278816572980Ratregion
5050248RH1339462061532663403266546Ratregion
5050414RH1340432031544137224413925Ratregion
5050422RH134047180151822890118229081Ratregion
5052761RH1422581701524613232461493Ratregion
5051230RH1345141981535732953573493Ratregion
5053159RH1424881101573824447382554Ratregion
5054605RH1433202311539198113920825Ratregion
5050808RH1342702121536512833651495Ratregion
5041686RH1290001961540019094002105Ratregion
5041742RH1290322041574931527493356Ratregion
5041476RH1288781831536025273602710Ratregion
5044668RH130735184151694804116948225Ratregion
5046332RH131692181151859663518596816Ratregion
5045326RH131113184151283302012833204Ratregion
5046452RH131761202152257245022572652Ratregion
5046544RH1318142191598237999824018Ratregion
5047428RH132322194152006744020067634Ratregion
5047460RH132340211151038131410381525Ratregion
5045704RH1313312141538046033804817Ratregion
5046632RH131865190152180180221801992Ratregion
5048296RH1328211841574957107495894Ratregion
5049324RH1334152041536411213641325Ratregion
5039326RH127642183151696203516962218Ratregion
5042140RH129263209152040256720402776Ratregion
5047274RH132233180152258575122585931Ratregion
5048342RH132848206151858464818584854Ratregion
5048444RH1329071851576862877686472Ratregion
5048498RH132938187152009723720097424Ratregion
5049554RH1335482001542295644229764Ratregion
5039394RH127680181151835210718352292Ratregion
5039418RH127694210152063085020631876Ratregion
5042200RH1292971881538483823848570Ratregion
5040796RH1284881991538482653848464Ratregion
5043586RH1301101901537574663757656Ratregion
7192199Otx2455152194405821944513Ratregion
7192200Otx2102152194405821944160Ratregion
5042658RH1295660151281519212815410Ratregion
5041030RH128623216152247434522474561Ratregion
5043790RH1302292091525124842512692Ratregion
5040636RH1283972081539984253998633Ratregion
5041348RH128805187151685990316860091Ratregion
5074938RH1383051491537303893730538Ratregion
5075006RH138344136151662871316628849Ratregion
5074362RH137973171151676997616770147Ratregion
5074408RH138000149151260555612605705Ratregion
5075964RH1388991771550719855072162Ratregion
5074614RH1381181521596668449666996Ratregion
5076220RH1390491301527949082795038Ratregion
5076942RH1394682141550402965040510Ratregion
5077062RH139537220151281489412815114Ratregion
5074998RH138340226152180367821803904Ratregion
5080574RH1416592041535968893597093Ratregion
5080698RH1417302141574373297437543Ratregion
5077528RH1398081891536009603601149Ratregion
5079472RH1410172161575502527550468Ratregion
5079552RH1410641911532634763263667Ratregion
5079630RH1411132001524613382461538Ratregion
5077294RH139674193152252336022523553Ratregion
5077822RH139979186152173560221735788Ratregion
5078040RH140108170151859624118596411Ratregion
5076412RH1391601631532673873267550Ratregion
5079728RH1411691801538186523819147Ratregion
5077534RH139811204151856371018563914Ratregion
5078286RH1402511811537751033775284Ratregion
5078574RH140422177152186771121867888Ratregion
5080252RH141473150151040245410402604Ratregion
5080252RH141473150151040245410402604Ratregion
5071014RH134837203151286858512868788Ratregion
5080434RH1415772191544140534414272Ratregion
5078702RH140500113151857748118577594Ratregion
5071318RH135013215151274186812742083Ratregion
5071344RH1350281811524626752462856Ratregion
5071428RH1350761871544166934416880Ratregion
5073372RH137398196151035394610354142Ratregion
5074260RH1379141371532668463266983Ratregion
5073472RH137456180152194223221942413Ratregion
5073614RH137538122151005067410050796Ratregion
5072230RH136728236151274241012742648Ratregion
5072264RH136748185152194322921943414Ratregion
5074696RH138165136151723203417232170Ratregion
5074732RH138186246151713134417131590Ratregion
5071710RH135239180151707373717073917Ratregion
5061698BF4024811911591790739179264Ratregion
5063354BE107599197151639739416397592Ratregion
5065032BE108953178151286985912870037Ratregion
5067174AU047915242151280015612800398Ratregion
5067210AU0478942261545491174549345Ratregion
5067442AU047741211151137636211376573Ratregion
5067560AU047671127151524400115244128Ratregion
5068054AU0473752931560302776030559Ratregion
5068824AU046903128151511735115117479Ratregion
5068846AU0468892491546844074684657Ratregion
5069214AU046643135151511733015117465Ratregion
5069746AU02916792151373069713730786Ratregion
5070382AV06542592151686072016860812Ratregion
5070384AV06708385151657278016572865Ratregion
5070388AI447922142152247211522472257Ratregion
5069216AU0466421671532031103204614Ratregion
5060114BF388503135151272005712720192Ratregion
5065192BE121117151151708659817086749Ratregion
5065252BE121284185151883646418836649Ratregion
5065304AI535165168152238065822380826Ratregion
5065326BI297004162151676067116760833Ratregion
5063862BE1200961801574528097452989Ratregion
5064030BE120481153151882289618823049Ratregion
5062798AW5344761521526412022641354Ratregion
5064400BF411196951537475713747666Ratregion
5060266AW5310341781589715938971771Ratregion
5061880AW5339871891528632912863480Ratregion
5062070BF3973801251538062003806325Ratregion
5063622BE107866177151277699612777173Ratregion
5063672BE1079481571525135192513676Ratregion
5064016BE1204491591536088103608969Ratregion
5065720BF406292193152153323221533425Ratregion
5062776AW5344071591532645493264708Ratregion
5066098BE116836190151333198613332176Ratregion
5061070AW5320841951571320417132236Ratregion
5061074AW5320911911528171202817311Ratregion
5061142AW526395171151646691016467081Ratregion
5064530BF3993051511578603367860487Ratregion
5061312BE1115702011531632813163482Ratregion
5064740BE108434187151282477312824960Ratregion
5066280PMC134698P21671589055638905730Ratregion
5066282PMC134698P34661589058528906318Ratregion
5063162BF398432167152238490122385068Ratregion
5066476AU048334196151465560614655802Ratregion
5066516AU048310117151252743412527551Ratregion
5084402AA850355911539597593959850Ratregion
5082211BI2807521831534854633486825Ratregion
5082211BI2807521831534866423486825Ratregion
5082431BE1193891831578276357827818Ratregion
5082495BE1195481761589020018902177Ratregion
5086400AW5298521791589183288918507Ratregion
5087263AA8939821901525123062512496Ratregion
5087588PMC34552P3300151961931019619610Ratregion
5089773AU049355226151914949019149718Ratregion
5089783AU049361145152017864720178796Ratregion
5082957BF390487170151338706213387232Ratregion
5089153AU048986107151894904718949083Ratregion
5089207AU0490191711599374509937621Ratregion
5089883AU049420235151592298115923216Ratregion
5083289BF417339180151356265913562839Ratregion
5088417AU0485572451546844064684657Ratregion
5088575AU048651147151214249812142645Ratregion
5090683AU0498981441574241177424261Ratregion
5083841AA892414101151058537310585474Ratregion
5083879AA893114241152010880220109043Ratregion
5089687AU0493031571572975627297719Ratregion
5083956AI012084146152048946520489611Ratregion
5081705BF414877188152029695120297139Ratregion
5084696AI17910195151868399218684087Ratregion
5090055AU049523194151622055216220746Ratregion
5087203AA9246051591539208133920972Ratregion
5082305BE119151157151433825614338413Ratregion
5085106AW531782165151228888512289050Ratregion
5088439AU048570159152206902622069185Ratregion
5080902RH1418491991523003282300527Ratregion
5085147AW5318021511546153704615517Ratregion
5088653AU048697146151672551116725657Ratregion
5081264RH142060201151858055618580757Ratregion
5085669AW535555210152048069920480894Ratregion
5083001BF390601150152258638822586538Ratregion
5086151BQ2045661681544659254466093Ratregion
5086317AW529791155152079581920795974Ratregion
5085637BM390674220151647614716476367Ratregion
5083425BF391109107151807237218072479Ratregion
5086791AI2282451661539400873940253Ratregion
5081793AA9002971391524632952463434Ratregion
5081973BF415513107151173766611737773Ratregion
5083785AI599520148151849324418493392Ratregion
5503080Myoz11191536455423647222Ratregion
5507551GDB:131855188151277286212772950Ratregion
5503904BARC006014451532778863279331Ratregion
5505249Bmp40151961917319620744Ratregion
5505464Synpo2l1501536356943635844Ratregion
5505343Otx2os1980152195459021955570Ratregion
5505510D19S9151032151767699917678572Ratregion
5505947UniSTS:496641362151962072719621089Ratregion
5506011UniSTS:497280235151961950819620747Ratregion
5506411Ncl5731536991883699761Ratregion
5506565OTX2_1019918152194362221944540Ratregion
5506945REN38985254151929079719291051Ratregion
5500137UniSTS:2371362001523100832310283Ratregion
5501417Otx21213152194666821947881Ratregion
5499973UniSTS:2358961111544473554448330Ratregion
5500545RH1359132051523160942316299Ratregion
5500404GDB:4516041521568123336812460Ratregion
5503760Rarb3661590499289050294Ratregion
5504518PMC263848P2121152063079820630919Ratregion
5504706PMC58788P1113151736087017360983Ratregion
5504706PMC58788P1113151736087017360983Ratregion
5504706PMC58788P1113151808071518080828Ratregion
5504706PMC58788P1113151808071518080828Ratregion
5506523BMP4_296914151961863619619550Ratregion
5501834MARC_15281-15282:1013612096:1460151277476612775226Ratregion
5502220GDB:642165751535735683573643Ratregion
5502142MARC_5761-5762:996690803:2110151962106819622227Ratregion
Position Markers

Flank 1: (D15Rat38)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,266,368 - 2,266,460 (+)MAPPER
Rnor_6.0152,327,877 - 2,327,968NCBI
Rnor_5.0152,310,393 - 2,310,484UniSTS
RGSC_v3.4152,306,221 - 2,306,312UniSTS
RGSC_v3.4152,306,220 - 2,306,312RGD
RGSC_v3.1152,306,221 - 2,306,312RGD
Celera152,313,913 - 2,314,004UniSTS
RH 3.4 Map1542.5RGD
RH 3.4 Map1542.5UniSTS
RH 2.0 Map150.0RGD
SHRSP x BN Map152.7498RGD
FHH x ACI Map150.0RGD
Cytogenetic Map15p16UniSTS
Peak: (D15Rat31)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21522,711,773 - 22,711,984 (+)MAPPER
Rnor_6.01526,288,592 - 26,288,802NCBI
Rnor_5.01530,216,394 - 30,216,604UniSTS
RGSC_v3.41525,410,550 - 25,410,881RGD
RGSC_v3.41525,410,630 - 25,410,840UniSTS
RGSC_v3.11525,426,250 - 25,426,581RGD
Celera13102,708,249 - 102,708,459UniSTS
RH 2.0 Map15139.6RGD
FHH x ACI Map1522.15RGD
Cytogenetic Map15p14UniSTS
Cytogenetic Map13q27UniSTS
Flank 2: (D15Rat31)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21522,711,773 - 22,711,984 (+)MAPPER
Rnor_6.01526,288,592 - 26,288,802NCBI
Rnor_5.01530,216,394 - 30,216,604UniSTS
RGSC_v3.41525,410,550 - 25,410,881RGD
RGSC_v3.41525,410,630 - 25,410,840UniSTS
RGSC_v3.11525,426,250 - 25,426,581RGD
Celera13102,708,249 - 102,708,459UniSTS
RH 2.0 Map15139.6RGD
FHH x ACI Map1522.15RGD
Cytogenetic Map15p14UniSTS
Cytogenetic Map13q27UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 20 ACI/SegHsd, 20 WF/CrCrli, 20 ACI/SegHsd x WF/CrCrli F1 and 138 F2; software used: MAPMAKER/EXP3.0 and ANOVA 1625309
qtl_general colorectal lesions appeared as spherical or ovoid lesions with a velvety smooth or slightly bossy appearance in the entire length of colon and rectum along with well and poorly differentiated adenocarcinomas 1625309
qtl_general inducing agent: injection of s.c.dimethylhydrazine (20 mg/kg body weight) weekly for 26 weeks 1625309
qtl_general measurement method: lesions were counted and a caliper was used to determine their maximum and minimum diameter 1625309
qtl_general only when poorly differentiated multiplicity was considered the LOD=4.3; ACI allele was responsible for multiplicity values for poorly differentiated adenocarcinoma and total lesions 1625309