Colcr1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Colcr1 (Colorectal carcinoma resistance QTL 1) Rattus norvegicus

Symbol: Colcr1
Name: Colorectal carcinoma resistance QTL 1
RGD ID: 1641905
Previously known as: rat Colorectal carcinoma resistance 1; rCcr1
Trait: intestine integrity trait   (VT:0010554)    
Measurement Type: benign colorectal tumor surface area measurement   (CMO:0001799)    
LOD Score: 4.3
P Value: 3.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr848,428,551 - 30,449,094RGD_MAPPER_PIPELINE
mRatBN7.241 - 29,494,328RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.041 - 26,654,881RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.041 - 26,562,180RGDRnor_5.0
RGSC_v3.441 - 26,178,440RGDRGSC_v3.4
RGSC_v3.140 - 26,194,337RGD
Cross Type: intercross
Strains Crossed: ACI/SegHsd WF/CrCrli 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
WF/CrCrli  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification and chromosome mapping of loci predisposing to colorectal cancer that control Wnt/{beta}-catenin pathway and progression of early lesions in the rat. De Miglio MR, etal., Carcinogenesis. 2007 May 17;.
2. Most lung and colon cancer susceptibility genes are pair-wise linked in mice, humans and rats. Quan L, etal., PLoS One. 2011 Feb 24;6(2):e14727.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68402Dpp6dipeptidyl peptidase like 6483232209242694Rat
11471061LOC10835082860S ribosomal protein L10a pseudogene485698948591263Rat
41258656Nme2-ps4NME/NM23 nucleoside diphosphate kinase 2, pseudogene 4492310419231491Rat
41188942LOC120102576U6 spliceosomal RNA493511179351220Rat
41145582Cdk4-ps4cyclin-dependent kinase 4, pseudogene 4494376939480307Rat
401991141LOC134486538uncharacterized LOC134486538495968759601387Rat
402378720LOC134486539uncharacterized LOC134486539496260809638513Rat
402242074LOC134486663uncharacterized LOC134486663497344109741167Rat
41324069LOC120102206uncharacterized LOC120102206498005109805399Rat
7659798LOC102548175uncharacterized LOC102548175499400349972940Rat
402037825LOC134486709uncharacterized LOC134486709499472069948618Rat
1565759Actr3bactin related protein 3B4999555310089422Rat
402222024LOC134486710uncharacterized LOC13448671041006320210073957Rat
1564823Xrcc2X-ray repair cross complementing 241015713010237089Rat
41264669LOC120102207uncharacterized LOC12010220741020047110210335Rat
11382704LOC108350851protein transport protein Sec61 subunit gamma pseudogene41029135410291560Rat
2322811Rpl10a-ps9ribosomal protein L10A, pseudogene 941032332910324080Rat
1561536Cct8l2chaperonin containing TCP1 subunit 8 like 241033888210340818Rat
402283765LOC134486540uncharacterized LOC13448654041034469610346006Rat
1587205Kmt2clysine methyltransferase 2C41035369810755965Rat
41231425Map1lc3b-ps2microtubule-associated protein 1 light chain 3 beta, pseudogene 241044983310450530Rat
735097Galnt11polypeptide N-acetylgalactosaminyltransferase 1141057146410604974Rat
11418580Rpl30-ps8ribosomal protein L30, pseudogene 841058993210590848Rat
1565271Galntl5polypeptide N-acetylgalactosaminyltransferase-like 541060726010657181Rat
41090173LOC120102456calcineurin B homologous protein 1-like41068110910683660Rat
2323464LOC100359776hypothetical LOC10035977641071636810727819Rat
727782Prkag2protein kinase AMP-activated non-catalytic subunit gamma 241074469510985939Rat
7526315LOC102554253uncharacterized LOC10255425341085468610859277Rat
7680602LOC102554193uncharacterized LOC10255419341089534710897974Rat
41315240LOC120102471uncharacterized LOC12010247141097766410982981Rat
621840RhebRas homolog, mTORC1 binding41101217311053860Rat
41241150LOC120102594U6 spliceosomal RNA41126572311265824Rat
1308547Crygncrystallin, gamma N41128647511294002Rat
1566180Wdr86WD repeat domain 8641131582611335932Rat
1359489Nub1negative regulator of ubiquitin-like proteins 141133537611366263Rat
402204981LOC134486541uncharacterized LOC13448654141138155311387137Rat
1561560Gpd1l3glycerol-3-phosphate dehydrogenase 1 like 341141622911419524Rat
1311869Smarcd3SWI/SNF related BAF chromatin remodeling complex subunit D341144114211472781Rat
1306404Chpf2chondroitin polymerizing factor 241147091711479096Rat
2325494Mir671microRNA 67141147319411473274Rat
1304942Abcf2ATP binding cassette subfamily F member 241148586511500067Rat
1564789Iqca1lIQ motif containing with AAA domain 1 like41150912111520765Rat
1562922Asb10ankyrin repeat and SOCS box-containing 1041152253111531946Rat
621864Gbx1gastrulation brain homeobox 141153840211564931Rat
1310751Agap3ArfGAP with GTPase domain, ankyrin repeat and PH domain 341156719111617610Rat
402082517LOC134486542uncharacterized LOC13448654241159601411614252Rat
735120Tmub1transmembrane and ubiquitin-like domain containing 141162193111624497Rat
1311601FastkFas-activated serine/threonine kinase41162469711628769Rat
3711Slc4a2solute carrier family 4 member 241162886011646961Rat
70514Cdk5cyclin-dependent kinase 541164709811651606Rat
708578Asic3acid sensing ion channel subunit 341165294611657415Rat
1307655Abcb8ATP binding cassette subfamily B member 841166071611676030Rat
1560887Atg9bautophagy related 9B41167854811686097Rat
40958365LOC120102208uncharacterized LOC12010220841168013311681938Rat
3186Nos3nitric oxide synthase 341168608811706604Rat
621414Kcnh2potassium voltage-gated channel subfamily H member 241171935711751424Rat
11470826LOC108350647uncharacterized LOC10835064741180325011821673Rat
1560934Nup42nucleoporin 4241187795711894991Rat
402284120LOC134486544uncharacterized LOC13448654441189485111897002Rat
1305564Klhl7kelch-like family member 741189876611947796Rat
402091067LOC134486543uncharacterized LOC13448654341194191011946912Rat
1562906Hycc1hyccin PI4KA lipid kinase complex subunit 141202469212131504Rat
41185982Ube2i-ps6ubiquitin-conjugating enzyme E2I, pseudogene 641205534112056095Rat
40988581LOC120102210uncharacterized LOC12010221041206904512081271Rat
7653780LOC102555004uncharacterized LOC10255500441215125312166966Rat
6502346LOC100909675uncharacterized LOC10090967541217998812184203Rat
41215821Snord93small nucleolar RNA, C/D box 9341218249912182569Rat
1591393Tomm7translocase of outer mitochondrial membrane 741219750312204344Rat
1560433Rint1RAD50 interactor 141221180612248117Rat
1307054Pus7pseudouridine synthase 741225255312293547Rat
41232405LOC120102743small nucleolar RNA SNORD9341233234112332411Rat
1305107Srpk2SRSF protein kinase 241235698312548345Rat
402008978LOC134486545uncharacterized LOC13448654541236851512373380Rat
1309641Kmt2elysine methyltransferase 2E41255057012655329Rat
41106171LOC120102473uncharacterized LOC12010247341265545212675580Rat
40993653LOC120102618U7 small nuclear RNA41268062012680684Rat
401993213LOC134486546zinc finger CCHC domain-containing protein 10-like41271773312726364Rat
9400372Mifl1macrophage migration inhibitory factor like 141285872212861498Rat
402154855LOC134486548uncharacterized LOC13448654841322976213237675Rat
41244972Rnu2-12RNA, U2 small nuclear 1241326769413267774Rat
402356933LOC134486547uncharacterized LOC13448654741327491913285331Rat
40977562LOC120102619U7 small nuclear RNA41333324013333296Rat
41392212LOC120102614U7 small nuclear RNA41336953213369593Rat
1561088Orc5origin recognition complex, subunit 541344026413504888Rat
41354020LOC120102148uncharacterized LOC12010214841353317613562656Rat
41018004LOC120102692small nucleolar RNA SNORA1741361295113613070Rat
3553Relnreelin41362844014055201Rat
402441810LOC134486550uncharacterized LOC13448655041371607813722315Rat
402281220LOC134486549small ribosomal subunit protein uS5-like41375939513804808Rat
9334471Elobl5elongin B like 541399913614010025Rat
7532340Cryzl1-ps1crystallin zeta like 1, pseudogene 141409046814091680Rat
69334Slc26a5solute carrier family 26 member 541410249214141520Rat
3428Psmc2proteasome 26S subunit, ATPase 241414808014162390Rat
620524Dnajc2DnaJ heat shock protein family (Hsp40) member C241416249014189662Rat
41053492LOC120102645small nucleolar RNA SNORA4841417298314173129Rat
621297Pmpcbpeptidase, mitochondrial processing subunit beta41418980714202584Rat
1587329Arf1-ps3ADP-ribosylation factor 1, pseudogene 341421769814221191Rat
735197NapepldN-acyl phosphatidylethanolamine phospholipase D41425159114291010Rat
1305915Armc10armadillo repeat containing 1041429121114306799Rat
1642425Fbxl13F-box and leucine-rich repeat protein 1341430703214505491Rat
41107235LOC120102659small nucleolar RNA SNORA1741438919114389318Rat
1560165Lrrc17leucine rich repeat containing 1741439363214424048Rat
41018904LOC120102739small nucleolar RNA SNORD8641444802614448111Rat
1562135Fam185afamily with sequence similarity 185, member A41446916514555167Rat
402162049LOC134486551uncharacterized LOC13448655141448123514487854Rat
1559535Ccdc146coiled-coil domain containing 14641455496614703801Rat
620170Fgl2fibrinogen-like 241460276214608405Rat
41335650LOC120102212uncharacterized LOC12010221241464772414653339Rat
1563271Gsapgamma-secretase activating protein41470523714800057Rat
41237841Net1-ps1neuroepithelial cell transforming 1, pseudogene 141484705114865508Rat
41193151LOC120102737small nucleolar RNA SNORA4041487320914873333Rat
7666239LOC102556034uncharacterized LOC10255603441490436414913030Rat
620894Ptpn12protein tyrosine phosphatase, non-receptor type 1241491307114985084Rat
41353109LOC120102213uncharacterized LOC12010221341499230515002229Rat
1308748Rsbn1lround spermatid basic protein 1-like41501440515093287Rat
9685233AptrAlu-mediated CDKN1A/p21 transcriptional regulator41503041715031719Rat
1308939Tmem60transmembrane protein 6041510216815107023Rat
1310593Phtf2putative homeodomain transcription factor 241510734115222683Rat
402303647LOC134486554uncharacterized LOC13448655441515112315159997Rat
621855Magi2membrane associated guanylate kinase, WW and PDZ domain containing 241527851816762427Rat
41061536LOC120102478uncharacterized LOC12010247841528587115297919Rat
40992258LOC120102477uncharacterized LOC12010247741547393515482900Rat
402388703LOC134486552ribosome biogenesis protein NSA2 homolog41568213115683504Rat
41096115Rpl28-ps10ribosomal protein L28, pseudogene 1041570787715708191Rat
41012632LOC120102678small nucleolar RNA SNORA1741584087615841005Rat
402360878LOC134486553uncharacterized LOC13448655341608533516101824Rat
11420335Tmsb10l4thymosin beta 10 like 441619164116192485Rat
9417558Lmnb2-ps1lamin B2, pseudogene 141634939316493977Rat
41303880Rnu6-543RNA, U6 small nuclear 54341647225016472356Rat
41216683Trnap-agg63transfer RNA proline (anticodon AGG) 6341659626416596338Rat
41065937LOC120102475uncharacterized LOC12010247541669615216740410Rat
41161253LOC120102476uncharacterized LOC12010247641673904216740537Rat
76813254921504A21RiklRIKEN cDNA 4921504A21 gene like41676259616790116Rat
2318988Bclaf1-ps1BCL2-associated transcription factor 1, pseudogene 141677740316780168Rat
41076500LOC120102698small nucleolar RNA SNORA1741718103017181146Rat
6497775Apex1-ps2apurinic/apyrimidinic endodeoxyribonuclease 1, pseudogene 241733725717338214Rat
2713Gnai1G protein subunit alpha i141770606117790176Rat
727817Gnat3G protein subunit alpha transducin 341805455118104332Rat
402093392LOC134486711glyceraldehyde-3-phosphate dehydrogenase-like41806114618062221Rat
41284761Trnaa-agc88transfer RNA alanine (anticodon AGC) 8841808206718082141Rat
2301Cd36CD36 molecule41820908818302142Rat
1565355Cd36l1CD36 molecule like 141831680618357863Rat
402072544LOC134486712platelet glycoprotein 4-like41837230118408431Rat
41249586Cd36l2CD36 molecule like 241843095218484232Rat
1309343Sema3csemaphorin 3C41853845218702453Rat
41391017LOC120102215uncharacterized LOC12010221541864380318695434Rat
1563537Rps9-ps5ribosomal protein S9, pseudogene 541877790018778458Rat
7549033LOC102551002uncharacterized LOC10255100241892076319001297Rat
41145508LOC120102685small nucleolar RNA SNORA1741902849019028614Rat
2322730Tfb1m-ps1transcription factor B1, mitochondrial, pseudogene 141914787219155512Rat
7747752Cdhr17cadherin related family member 1741938294319480347Rat
2794Hgfhepatocyte growth factor41962890219700467Rat
9414363LOC103692033uncharacterized LOC10369203341969966619715110Rat
2247Cacna2d1calcium voltage-gated channel auxiliary subunit alpha2delta 141990232420330287Rat
402365529LOC134486713uncharacterized LOC13448671341999967420005918Rat
2322535Plrg1-ps1pleiotropic regulator 1, pseudogene 142036163620387327Rat
40929882LOC120102654small nucleolar RNA SNORA4842039928620399433Rat
69406Pclopiccolo (presynaptic cytomatrix protein)42064660421005171Rat
402139342LOC134486715uncharacterized LOC13448671542116095021170928Rat
11466909LOC108350655uncharacterized LOC10835065542118834221210080Rat
1310973Sema3esemaphorin 3E42125268621510449Rat
402122570LOC134486716uncharacterized LOC13448671642141638321430179Rat
41344080LOC1201025525S ribosomal RNA42147474721474865Rat
7646743LOC102552661uncharacterized LOC10255266142158067221585378Rat
40969825LOC120102459NEDD4-binding protein 1-like42166863521670035Rat
41257705LOC120102460NEDD4-binding protein 1-like42170430021705664Rat
41285801LOC120102461NEDD4-binding protein 1-like42171155621712659Rat
41096301LOC120102462NEDD4-binding protein 1-like42171882121720185Rat
1584092N4bp1l1Nedd4 binding protein 1 like 142176133821762431Rat
40989850LOC120102149NEDD4-binding protein 1-like42177041321771053Rat
41113357LOC120102150NEDD4-binding protein 1-like42177767321778313Rat
1583001Scaf11-ps1SR-related CTD-associated factor 11, pseudogene 142182748621841846Rat
41165648LOC120102463NEDD4-binding protein 1-like42184219321843296Rat
41240105LOC120102151NEDD4-binding protein 1-like42188490621887106Rat
402164356LOC134486664NEDD4-binding protein 1-like42189225721894363Rat
402262738LOC134486699NEDD4-binding protein 1-like42189951421901104Rat
401989771LOC134486665NEDD4-binding protein 1-like42192893421930941Rat
41199734LOC120102216protein SCAF11-like42197900921983870Rat
7550011LOC102552749MLV-related proviral Env polyprotein-like42200705622009394Rat
402447080LOC134486714uncharacterized LOC13448671442201455122026536Rat
41115840LOC120102217uncharacterized LOC12010221742211477222136955Rat
402115483LOC134486717uncharacterized LOC13448671742214004922160530Rat
3657Sema3asemaphorin 3A42223941822709907Rat
41320971LOC120102218uncharacterized LOC12010221842304228623074315Rat
402358120LOC134486718uncharacterized LOC13448671842309493123101582Rat
402441235LOC134486719uncharacterized LOC13448671942320146923204715Rat
727939Sema3dsemaphorin 3D42327181523460971Rat
40955874LOC120102571U6 spliceosomal RNA42392330623923413Rat
41054814Envl-ps4MLV-related proviral Env polyprotein-like, pseudogene 442394349823945399Rat
41303418Snora31bsmall nucleolar RNA, H/ACA box 31B42403908824039224Rat
7624497LOC102553320uncharacterized LOC10255332042454795224617151Rat
1562636Ppp1r3bl1protein phosphatase 1, regulatory subunit 3B like 142472194924722722Rat
1564798Tmem183a-ps1transmembrane protein 183A, pseudogene 142485214724853271Rat
6492128Rps6-ps11ribosomal protein S6, pseudogene 1142504832625051311Rat
9197484LOC103692044mitochondrial import inner membrane translocase subunit Tim8 A pseudogene42524447125244855Rat
2744Grm3glutamate metabotropic receptor 342531921825600721Rat
1563349Elapor2endosome-lysosome associated apoptosis and autophagy regulator family member 242556529825760684Rat
2325362Mir879microRNA 87942567941425679489Rat
11462374LOC108350658uncharacterized LOC10835065842573451225749569Rat
7536117LOC102555663uncharacterized LOC10255566342576072425762625Rat
70966Dmtf1cyclin D binding myb-like transcription factor 142586489125905916Rat
1562351Tmem243transmembrane protein 24342590574025923588Rat
41334218LOC120102603U6 spliceosomal RNA42590767325907773Rat
41118809LOC120102219uncharacterized LOC12010221942594449925964576Rat
402235600LOC134486720uncharacterized LOC13448672042595894225960898Rat
41212670Eif3k-ps1eukaryotic translation initiation factor 3, subunit K, pseudogene 142596700625967627Rat
402125330LOC134486666uncharacterized LOC13448666642599823526023459Rat
70908Crotcarnitine O-octanoyltransferase42603172926088057Rat
620248Abcb4ATP binding cassette subfamily B member 442610689526164440Rat
41286244LOC120102221uncharacterized LOC12010222142612659826131252Rat
41047811C1h11orf98-ps2similar to human chromosome 11 open reading frame 98, pseudogene 242612967326130037Rat
3318Abcb1bATP-binding cassette, sub-family B member 1B42619770626280156Rat
41222673LOC120102222uncharacterized LOC12010222242619815926208402Rat
619951Abcb1aATP binding cassette subfamily B member 1A42631240326488456Rat
1587590Rundc3bRUN domain containing 3B42641750126554404Rat
1308774Slc25a40solute carrier family 25, member 4042654428826631439Rat
1305854Dbf4DBF4-CDC7 kinase regulatory subunit42663149126656080Rat
1585016Adam22ADAM metallopeptidase domain 2242667098426925843Rat
41165065Trnap-agg72transfer RNA proline (anticodon AGG) 7242673542926735509Rat
41303543LOC120102223uncharacterized LOC12010222342677846726790841Rat
1584485Srisorcin42692833826952980Rat
402002260LOC134486721uncharacterized LOC13448672142701632627032399Rat
1560331Steap4STEAP4 metalloreductase42703209627054769Rat
41240640LOC120102760U2 spliceosomal RNA42733019627330337Rat
41340251Ranbp1-ps1RAN binding protein 1, pseudogene 142742385127427293Rat
1589640Zfp804bzinc finger protein 804B42756394828099625Rat
41129509Rnu2-34RNA, U2 small nuclear 3442757205527572133Rat
41258698LOC120102775U4 spliceosomal RNA42757302027573171Rat
1564345Tex47testis expressed 4742759899027602285Rat
1589639Cd2ap-ps1CD2-associated protein, pseudogene 142815291428155399Rat
7734714LOC102549955uncharacterized LOC10254995542816558928217818Rat
41114928Ewsr1-ps6EWS RNA-binding protein 642848111828483281Rat
1589637Psme2-ps2proteasome activator subunit 2, pseudogene 242867966528680480Rat
2323949Psma2-ps1proteasome 20S subunit alpha 2, pseudogene 142879232228793014Rat
1561754Hmgb3l2high mobility group box 3 like 242884651028846989Rat
1311543Steap1STEAP family member 142923180929242317Rat
1307050Steap2STEAP2 metalloreductase42930248729323006Rat
6496360Cfap69cilia and flagella associated protein 6942933462429405513Rat
401998828LOC134486556uncharacterized LOC13448655642934790629350349Rat
402168091LOC134486555glyceraldehyde-3-phosphate dehydrogenase-like42940585629409845Rat
41220038Fam237bfamily with sequence similarity 237 member B42941267729413096Rat
1305878Gtpbp10GTP binding protein 1042943168329449201Rat
1561053Cldn12claudin 1242947746829488465Rat
9118001Pttg1ip2PTTG1IP family member 242951511329555197Rat
11517003LOC108350663uncharacterized LOC10835066342951997129540193Rat
1305544Cdk14cyclin-dependent kinase 1442961923730213651Rat
40946680Rps15a-ps6ribosomal protein S15a, pseudogene 642977934029802168Rat
7573585Speer4cl3spermatogenesis associated glutamate (E)-rich protein 4C like 343002253630051134Rat
61916Fzd1frizzled class receptor 143026507430269472Rat
41019115LOC120102226uncharacterized LOC12010222643028756630294988Rat
41390098LOC120102572U6 spliceosomal RNA43039756130397667Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34200D4Mgh114642228845322288599Ratregion
34343D4Mgh2291497738999773990Ratregion
11310D4Bro116441164270111642865Ratregion
36127D4Rat916242786220427862366Ratregion
36305D4Rat4173486694318669604Ratregion
37618D4Rat139137484958188495955Ratregion
36448D4Rat617041566272915662899Ratregion
36504D4Rat213541075870110758836Ratregion
36632D4Rat24412941196918711969316Ratregion
36653D4Rat826541769583217696097Ratregion
35895D4Rat116841221245712212625Ratregion
35903D4Rat512841501105015011178Ratregion
39732D4Rat209170495775339577703Ratregion
38118D4Rat133153484285518428704Ratregion
40608D4Rat22115241916919619169348Ratregion
38776D4Rat14221641016791710168133Ratregion
38908D4Rat12613343044896130449094Ratregion
38918D4Rat13623141393764813937879Ratregion
42144D4Arb13153486067348606887Ratregion
42303D4Rat28020041094820110948401Ratregion
42684D4Rat247145490859069086051Ratregion
42687D4Rat25020941167372111673930Ratregion
42689D4Rat25119442379822823798422Ratregion
43767D4Got1514141156823411568375Ratregion
43768D4Got4277486693118669588Ratregion
43776D4Got1110641134015911340265Ratregion
43780D4Wox2619541647517116475366Ratregion
1629143D4Wox3215442346131823461472Ratregion
1635034D4Got25417741259091312591090Ratregion
1635857D4Got25217142703581027035981Ratregion
1637051D4Ulb317642583784325838019Ratregion
1634118D4Got28711342597548525975598Ratregion
5036434Nos327341168667811686951Ratregion
5035623WI-1802712442556440925564533Ratregion
5034576BG37332955641347757513478131Ratregion
5030001BF38851713541619075216190887Ratregion
5027715GDB:458494320341147142511471628Ratregion
7191223d4bro116341164270111642864Ratregion
5052963RH14237554741418900714189554Ratregion
5041794RH12906221941189887111899090Ratregion
5047574RH13240674542940468429405429Ratregion
5039698RH12785529941429148514291784Ratregion
5042682RH12958157041418905814189628Ratregion
5040168RH12812843041418989614190326Ratregion
5042928RH12972718841254721312547401Ratregion
5076888RH13943712141189388011894001Ratregion
5063372BI30177922741582175115821978Ratregion
5067220AU04788918341181884111819024Ratregion
5068264AU04725115941823524018235399Ratregion
5068930AU04683528541683527516835560Ratregion
5070498UniSTS:16628723741168702711687264Ratregion
5062472BE10671315241532191915322071Ratregion
5060862BF39585123141246296512463196Ratregion
5504544PMC30213P231641164786411648180Ratregion
5500637RH13638358141418898214189563Ratregion
5502138MARC_5449-5450:996690396:113542867992028680055Ratregion
10755486rs6615076342773051827730518Ratregion
Position Markers

Flank 1: (D4Rat133)
Rat AssemblyChrPosition (strand)Source
GRCr848,428,551 - 8,428,704 (+)Marker Load Pipeline
SHRSP x BN Map40.0RGD
SHRSP x BN Map40.0UniSTS
FHH x ACI Map41.3201RGD
Peak: (D4Rat133)
Rat AssemblyChrPosition (strand)Source
GRCr848,428,551 - 8,428,704 (+)Marker Load Pipeline
SHRSP x BN Map40.0RGD
SHRSP x BN Map40.0UniSTS
FHH x ACI Map41.3201RGD
Flank 2: (D4Rat126)
Rat AssemblyChrPosition (strand)Source
GRCr8430,448,961 - 30,449,094 (+)Marker Load Pipeline
mRatBN7.2429,494,195 - 29,494,328 (+)MAPPER
Rnor_6.0426,654,749 - 26,654,881NCBI
Rnor_5.0426,562,048 - 26,562,180UniSTS
RGSC_v3.4426,178,308 - 26,178,440UniSTS
RGSC_v3.4426,178,307 - 26,178,440RGD
Celera424,926,365 - 24,926,497UniSTS
RGSC_v3.1426,194,205 - 26,194,337RGD
RH 3.4 Map4168.9RGD
RH 3.4 Map4168.9UniSTS
RH 2.0 Map4187.8RGD
SHRSP x BN Map411.3899RGD
FHH x ACI Map414.3099RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4128392287Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42228845340471598Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4128392287Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4128392287Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4842855130449094Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42228845345429897Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general the presence of WF alleles at this QTL was significantly and dominantly associated with a decrease in adenoma surface area 1625309
qtl_general measurement method: lesions were counted and a caliper was used to determine their maximum and minimum diameter 1625309
qtl_general number of animals used: 20 ACI/SegHsd, 20 WF/CrCrli, 20 ACI/SegHsd x WF/CrCrli F1 and 138 F2; software used: MAPMAKER/EXP3.0 and ANOVA 1625309
qtl_general inducing agent: injection of s.c.dimethylhydrazine (20 mg/kg body weight) weekly for 26 weeks 1625309
qtl_general colorectal lesions appeared as spherical or ovoid lesions with a velvety smooth or slightly bossy appearance in the entire length of colon and rectum 1625309