Mcs21 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Mcs21 (Mammary carcinoma susceptibility QTL 21) Rattus norvegicus

Symbol: Mcs21
Name: Mammary carcinoma susceptibility QTL 21
RGD ID: 1600371
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor growth rate   (CMO:0000344)    
LOD Score: 3.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21028,875,650 - 52,200,160RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01030,021,354 - 54,057,745RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01029,855,098 - 53,807,373RGDRnor5.0
RGSC_v3.41029,541,648 - 54,220,239RGDRGSC3.4
RGSC_v3.11029,542,698 - 54,233,862RGD
Cross Type: backcross
Strains Crossed: WKY/Ztm SPRD/Ztm 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
SPRD/Ztm  (IEA)
WKY/Ztm  (IEA)

References

References - curated
# Reference Title Reference Citation
1. The Mcs7 quantitative trait locus is associated with an increased susceptibility to mammary cancer in congenic rats and an allele-specific imbalance. Cotroneo MS, etal., Oncogene. 2006 Aug 17;25(36):5011-7. Epub 2006 Mar 27.
2. Contrasting epistatic interactions between rat quantitative trait loci controlling mammary cancer development. Piessevaux G, etal., Mamm Genome. 2008 Dec 4.
3. Genetic identification of distinct loci controlling mammary tumor multiplicity, latency, and aggressiveness in the rat. Quan X, etal., Mamm Genome. 2006 Apr;17(4):310-21. Epub 2006 Apr 4.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
628704Il12binterleukin 12B102888883228903802Rat
1584858Gins4-ps1GINS complex subunit 4, pseudogene 1102893193928933904Rat
1310386Ublcp1ubiquitin-like domain containing CTD phosphatase 1102894569028961103Rat
1309561Rnf145ring finger protein 145102900639129050788Rat
41302965LOC120095078uncharacterized LOC120095078102905821329075530Rat
41095314LOC120095081uncharacterized LOC120095081102908747829094518Rat
620953Ebf1EBF transcription factor 1102909585829489142Rat
41013984LOC120095079uncharacterized LOC120095079102937281729379810Rat
40984111LOC120095448small nucleolar RNA SNORA17103008879130088922Rat
41271983LOC120095082uncharacterized LOC120095082103021597930229712Rat
1303328Clint1clathrin interactor 1103029861830353185Rat
1565523Lsm11LSM11, U7 small nuclear RNA associated103036784130385956Rat
1359513Thg1ltRNA-histidine guanylyltransferase 1-like103038792930396579Rat
1586382Sox30SRY-box transcription factor 30103041749930446441Rat
9339380LOC103693316activated RNA polymerase II transcriptional coactivator p15 pseudogene103047357630474470Rat
41247591LOC120095500U6 spliceosomal RNA103048549930485605Rat
1585017Adam19ADAM metallopeptidase domain 19103049136230583115Rat
40971431LOC120095083uncharacterized LOC120095083103049211630495725Rat
1309452Nipal4NIPA-like domain containing 4103058392630600640Rat
1305048Cyfip2cytoplasmic FMR1 interacting protein 2103062131830741113Rat
2318580Fndc9fibronectin type III domain containing 9103066443530668213Rat
1311618ItkIL2-inducible T-cell kinase103075334430814685Rat
1563555Garin3golgi associated RAB2 interactor family member 3103082987730833115Rat
6494481Med7mediator complex subunit 7103084233030857873Rat
1305233Havcr2hepatitis A virus cellular receptor 2103088248430914018Rat
2323463Havcr1l1hepatitis A virus cellular receptor 1 like 1103091986030941388Rat
1586332Havcr1l2hepatitis A virus cellular receptor 1 like 2103096305830983169Rat
41210406LOC120095353U6 spliceosomal RNA103096411730964223Rat
1586325Dppa1developmental pluripotency associated 1103099804931017756Rat
1359571Timd2T-cell immunoglobulin and mucin domain containing 2103106030831101262Rat
7566942Kmt5a-ps2lysine methyltransferase 5A, pseudogene 2103108663031088837Rat
708425Havcr1hepatitis A virus cellular receptor 1103111866731151730Rat
1585207Surf6-ps2surfeit 6, pseudogene 2103117475631176633Rat
1564516Timd4T-cell immunoglobulin and mucin domain containing 4103118575131221843Rat
2319448Hax1-ps2HCLS1 associated protein X-1, pseudogene 2103132788831329144Rat
1306638Sgcdsarcoglycan, delta103134648032328364Rat
40988783Zfp622-ps1zinc finger protein 622, pseudogene 1103288404232885277Rat
41337377LOC120095453small nucleolar RNA SNORA17103306016033060278Rat
11421503LOC10835221760S ribosomal protein L17 pseudogene103312479133125414Rat
2322885Rpl30-ps1ribosomal protein L30, pseudogene 1103312940633130617Rat
2322743Hars2l1histidyl-tRNA synthetase 2 like 1103313993633141734Rat
69229Rack1receptor for activated C kinase 1103316941533174896Rat
41112529LOC120095394small nucleolar RNA SNORD95103316993733170004Rat
41268997Snord96asmall nucleolar RNA, C/D box 96A103317109333171172Rat
41362314Snord95small nucleolar RNA, C/D box 95103317198333172050Rat
1308885Trim41tripartite motif-containing 41103317521333186472Rat
11519998Trnav-cac2transfer RNA valine (anticodon CAC) 2103318752533187597Rat
11427237Trnav-aac4transfer RNA valine (anticodon AAC) 4103319402233194094Rat
11427364Trnak-cuu16transfer RNA lysine (anticodon CUU) 16103320179133201863Rat
11411642Trnaa-ugc2transfer RNA alanine (anticodon UGC) 2103320227233202343Rat
41327896LOC120095506U6 spliceosomal RNA103320397733204083Rat
1307328Trim7tripartite motif-containing 7103320549133221482Rat
11471077Trnat-ugu1transfer RNA threonine (anticodon UGU) 1103322265233222724Rat
11388507Trnap-ugg5transfer RNA proline (anticodon UGG) 5103322542333225494Rat
11364143Trnav-aac5transfer RNA valine (anticodon AAC) 5103322579033225862Rat
11385134Trnal-aag3transfer RNA leucine (anticodon AAG) 3103322615833226239Rat
1305163Irgmimmunity-related GTPase M103323351333241594Rat
11492721LOC108352081heterogeneous nuclear ribonucleoprotein A3 pseudogene103323587833236925Rat
1559575RGD1559575similar to novel protein103325214633276364Rat
41381590LOC120095084uncharacterized LOC120095084103325431633263503Rat
7522823LOC102557028uncharacterized LOC102557028103328644133303560Rat
708470Ifi47interferon gamma inducible protein 47103329761833305248Rat
1333300Or2v2colfactory receptor family 2 subfamily V member 2C103331984433320791Rat
1584011Wbp11-ps6WW domain binding protein 11, pseudogene 6103332301233325107Rat
1560464Fam98b-ps1family with sequence similarity 98, member B, pseudogene 1103333639133338220Rat
1586044Or2v2bolfactory receptor family 2 subfamily V member 2B103335195433352895Rat
2322651Wbp11-ps8WW domain binding protein 11, pseudogene 8103335512933358199Rat
2322499Rpl31l2ribosomal protein L31-like 2103337529633375771Rat
1333024Or2v2olfactory receptor family 2 subfamily V member 2103337986333380810Rat
1582887Wbp11-ps7WW domain binding protein 11, pseudogene 7103338302133384950Rat
1334353Or2v1olfactory receptor family 2 subfamily V member 1103339989133404298Rat
1589570Or2t26olfactory receptor family 2 subfamily T member 26103344654033447493Rat
1590296Or2m13olfactory receptor family 2 subfamily M member 13103346033733461275Rat
1590287Btnl9butyrophilin-like 9103346605933489229Rat
41103944LOC120095085uncharacterized LOC120095085103347104833479197Rat
1560191Zfp62zinc finger protein 62103352261833539446Rat
620097Mgat1alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase103356364233582718Rat
1333402Or2y1golfactory receptor family 2 subfamily Y member 1G103359878833599723Rat
1333100Or2y1holfactory receptor family 2 subfamily Y member 1H103360951133610446Rat
1332792Or2y1eolfactory receptor family 2 subfamily Y member 1E103362385933624794Rat
1333284Or2y17-ps1olfactory receptor family 2 subfamily Y member 17, pseudogene 1103363807633639211Rat
2322151Eif3i-ps3eukaryotic translation initiation factor 3, subunit I, pseudogene 3103364790133648990Rat
1334152Or2y1dolfactory receptor family 2 subfamily Y member 1D103367649733677426Rat
1332722Or2y16olfactory receptor family 2 subfamily Y member 16103369047933691414Rat
1333419Or2y15olfactory receptor family 2 subfamily Y member 15103370729133708226Rat
1333571Or2y1colfactory receptor family 2 subfamily Y member 1C103371783133718760Rat
1333858Or2y1iolfactory receptor family 2 subfamily Y member 1I103373719933738128Rat
1333440Or2y1olfactory receptor family 2 subfamily Y member 1103374878133759730Rat
1334139Or2y14olfactory receptor family 2 subfamily Y member 14103374889833772292Rat
735025Or2y13olfactory receptor family 2 subfamily Y member 13103378883233789767Rat
1333732Or2y12olfactory receptor family 2 subfamily Y member 12103380072033801655Rat
1333927Olr1400olfactory receptor 1400103381634533817280Rat
1332806Or2y11olfactory receptor family 2 subfamily Y member 11103384475833845693Rat
7561849LOC102555091nuclear envelope pore membrane protein POM 121-like103389166933895263Rat
621737Flt4Fms related receptor tyrosine kinase 4103391372533954770Rat
727901Scgb3a1secretoglobin, family 3A, member 1103396805933969366Rat
1310783Cnot6CCR4-NOT transcription complex, subunit 6103397878534031025Rat
11359066Cnot6l2CCR4-NOT transcription complex, subunit 6 like 2103401895434026932Rat
41235583LOC120095087uncharacterized LOC120095087103403766334063640Rat
40936152LOC120095088uncharacterized LOC120095088103411404234116357Rat
1303097Gfpt2glutamine-fructose-6-phosphate transaminase 2103411500534161329Rat
628847Mapk9mitogen-activated protein kinase 9103416966134211138Rat
2325403Mir336microRNA 336103418557934185674Rat
41087638LOC120095089uncharacterized LOC120095089103420780234218525Rat
1311549Rasgef1cRasGEF domain family, member 1C103422748334293676Rat
1562041Rnf130ring finger protein 130103434283534456048Rat
14398588Mir340-1microRNA 340-1103439356834393665Rat
1310147Tbc1d9bTBC1 domain family member 9B103445993034497146Rat
1564036MrnipMRN complex interacting protein103450135934525474Rat
41010863LOC120095090uncharacterized LOC120095090103450463234507967Rat
69287Sqstm1sequestosome 1103452551734536670Rat
1562836Mgat4balpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B103454891834559229Rat
620677Ltc4sleukotriene C4 synthase103456047634562790Rat
1308631Maml1mastermind-like transcriptional coactivator 1103458863934623024Rat
41322563LOC120095092uncharacterized LOC120095092103462261534629153Rat
2266Canxcalnexin103462386534656866Rat
1594715Cby3chibby family member 3103468092634683176Rat
620840Hnrnph1heterogeneous nuclear ribonucleoprotein H1103469286834702849Rat
1305099Rufy1RUN and FYVE domain containing 1103470574134750644Rat
9129118LOC103693320uncharacterized LOC103693320103477646634790889Rat
41247523LOC120095319uncharacterized LOC120095319103486030534860870Rat
1565950Adamts2ADAM metallopeptidase with thrombospondin type 1 motif, 2103492099235126465Rat
69405Zfp354czinc finger protein 354C103512972035145717Rat
1563273Zfp879zinc finger protein 879103514867935158674Rat
2747Grm6glutamate metabotropic receptor 6103516798535182717Rat
7529496Znf454zinc finger protein 454103518372935200450Rat
1562610Zfp2zinc finger protein 2103520918735228849Rat
7562538Znf354bzinc finger protein 354B103523378335251110Rat
628759Prop1PROP paired-like homeobox 1103527195935274434Rat
1332779Or1ad1b-ps1olfactory receptor family 1 subfamily AD member 1B, pseudogene 1103527869635279251Rat
1334321Or1ad6olfactory receptor family 1 subfamily AD member 6103528828135289228Rat
1334258Or1ad1olfactory receptor family 1 subfamily AD member 1103529974435300667Rat
1333596Or1ad5olfactory receptor family 1 subfamily AD member 5103530766235308573Rat
1333856Or1ad8olfactory receptor family 1 subfamily AD member 8103532141835322341Rat
1593396Cycsl2cytochrome c, somatic like 2103532403835324419Rat
1333846Or1x2bolfactory receptor family 1 subfamily X member 2B103533922635340167Rat
1559512Tubb4b-ps3tubulin, beta 4B class IVb, pseudogene 3103534178335343148Rat
1332843Or1x2olfactory receptor family 1 subfamily X member 2103535277635353717Rat
1334078Or1x2colfactory receptor family 1 subfamily O member 2C103536466735365608Rat
1332794Or1x2dolfactory receptor family 1 subfamily X member 2D103537687635377808Rat
40991993Or1n2l-ps1olfactory receptor family 1 subfamily N member 2 like, pseudogene 1103538523735388191Rat
2967Zfp354azinc finger protein 354A103539624235408069Rat
41113907LOC120095486U2 spliceosomal RNA103543159035431802Rat
7644542LOC102546326uncharacterized LOC102546326103545689035471882Rat
41282977Msantd5l1Myb/SANT DNA binding domain containing 5 like 1103549715535499582Rat
1561674Msantd5Myb/SANT DNA binding domain containing 5103551692635526742Rat
1310274Clk4CDC-like kinase 4103552338235541387Rat
727898Col23a1collagen type XXIII alpha 1 chain103554909035839152Rat
41395344LOC120095095uncharacterized LOC120095095103564356235647037Rat
2293818Phykpl5-phosphohydroxy-L-lysine phospho-lyase103583996535863631Rat
69255Hnrnpabheterogeneous nuclear ribonucleoprotein A/B103585704035862935Rat
1309435Nhp2NHP2 ribonucleoprotein103587705735880399Rat
1559511Rmnd5brequired for meiotic nuclear division 5 homolog B103588125035892322Rat
7518009LOC102553843uncharacterized LOC102553843103589252435895226Rat
1308356N4bp3Nedd4 binding protein 3103589803135906704Rat
41188743LOC120095096uncharacterized LOC120095096103590688635912370Rat
6499350Trappc2btrafficking protein particle complex 2B103593822535942869Rat
1309451Sec24aSEC24 homolog A, COPII coat complex component103594690136024353Rat
1305590Sar1bsecretion associated, Ras related GTPase 1B103602441536054069Rat
1309152Jade2jade family PHD finger 2103607523936124210Rat
1560689Psmb3-ps9proteasome 20S subunit beta 3, pseudogene 9103613141536132138Rat
41116793LOC120095363U6 spliceosomal RNA103622744036227546Rat
41202251LOC120095388small nucleolar RNA SNORA70103622812336228246Rat
1308696Cdkn2aipnlCDKN2A interacting protein N-terminal like103623113436240569Rat
708345Ube2bubiquitin-conjugating enzyme E2B103624843436263379Rat
619874Cdkl3cyclin-dependent kinase-like 3103626321236349268Rat
3380Ppp2caprotein phosphatase 2 catalytic subunit alpha103635811036377864Rat
41013754LOC120095320protein FAM162A-like103638944736391357Rat
1359648Skp1S-phase kinase-associated protein 1103640198736417066Rat
41024400LOC120095419small nucleolar RNA SNORA42/SNORA80 family103640829736408432Rat
1305894Tcf7transcription factor 7103642344336454350Rat
621575Vdac1voltage-dependent anion channel 1103653230636559642Rat
1310352C10h5orf15similar to human chromosome 5 open reading frame 15103656398936576593Rat
40978598LOC120095229cytochrome b-c1 complex subunit 10-like103657209736574854Rat
7725831LOC102548512uncharacterized LOC102548512103659050736601778Rat
1590981Rps9-ps12ribosomal protein S9, pseudogene 12103660391436604743Rat
2321462Sdhd-ps2succinate dehydrogenase complex subunit D, pseudogene 2103666551736665975Rat
11393182LOC108348219uncharacterized LOC108348219103677128636774162Rat
2318953Rpl30l2ribosomal protein L30-like 2103683150436831985Rat
7712989LOC102548961uncharacterized LOC102548961103684575536861263Rat
41351702LOC120095321uncharacterized LOC120095321103690149536910274Rat
1307227Fstl4follistatin-like 4103691142237344545Rat
11402890LOC108352083uncharacterized LOC108352083103731910937342114Rat
628878Hspa4heat shock protein family A (Hsp70) member 4103740802537449080Rat
41155963Rps2-ps16ribosomal protein S2, pseudogene 16103744923037452916Rat
9453438LOC10369333660S ribosomal protein L14 pseudogene103746832437469665Rat
1308149Zcchc10zinc finger CCHC-type containing 10103747062837481027Rat
1311694Aff4ALF transcription elongation factor 4103749882537579751Rat
7736940Rpl10-ps1ribosomal protein L10, pseudogene 1103751659137518765Rat
1561235Leap2liver enriched antimicrobial peptide 2103758017237581244Rat
1562350Uqcrqubiquinol-cytochrome c reductase, complex III subunit VII103758586437589328Rat
71038Gdf9growth differentiation factor 9103758920037599970Rat
1308066Shroom1shroom family member 1103762114937631895Rat
1564616Sowahasosondowah ankyrin repeat domain family member A103764182337645390Rat
1308449Septin8septin 8103768464937713704Rat
621536Kif3akinesin family member 3a103772593037761183Rat
2898Il4interleukin 4103777120337776750Rat
68949Il13interleukin 13103779013037792687Rat
621542Rad50RAD50 double strand break repair protein103780935337861309Rat
2900Il5interleukin 5103787434237877213Rat
2920Irf1interferon regulatory factor 1103791715537924166Rat
7737472LOC102550895uncharacterized LOC102550895103792431138000504Rat
3702Slc22a5solute carrier family 22 member 5103800830338035474Rat
41136370Cdk4-ps2cyclin-dependent kinase 4, pseudogene 2103805133038054594Rat
1561735Slc22a21solute carrier family 22 (organic cation transporter), member 21103810411438133106Rat
621149Slc22a4solute carrier family 22 member 4103813333338179932Rat
3575Pdlim4PDZ and LIM domain 4103819868638212935Rat
1309673P4ha2prolyl 4-hydroxylase subunit alpha 2103824313638271983Rat
2321071Csnk2a1-ps1casein kinase 2 alpha 1, pseudogene 1103827522838276101Rat
621065Csf2colony stimulating factor 2103838694538388926Rat
2897Il3interleukin 3103840571638408066Rat
69403Acsl6acyl-CoA synthetase long-chain family member 6103843991438501182Rat
41212005LOC120095100uncharacterized LOC120095100103844807338454581Rat
41327488LOC120095099uncharacterized LOC120095099103847590138477636Rat
1566120Meikinmeiotic kinetochore factor103850815638556732Rat
2318339Fnip1folliculin interacting protein 1103856772838650824Rat
41294032LOC120095375U6 spliceosomal RNA103858821338588317Rat
1307645Rapgef6Rap guanine nucleotide exchange factor 6103865585438824227Rat
1563924Cdc42se2CDC42 small effector 2103883654938905056Rat
41147093LOC120095101uncharacterized LOC120095101103893107038933247Rat
1596391Lyrm7LYR motif containing 7103896429938983628Rat
1593411Hint1histidine triad nucleotide binding protein 1103898951638993259Rat
69224Gpx3glutathione peroxidase 3103902862439036695Rat
1309380Tnip1TNFAIP3 interacting protein 1103903704839084328Rat
621172Anxa6annexin A6103910139539156483Rat
2318188LOC10036240060S ribosomal protein L13-like103910273839104222Rat
41263071LOC120095102uncharacterized LOC120095102103914750039152632Rat
1590933Ybx1-ps20Y box binding protein 1, pseudogene 20103916118439162722Rat
1562251Ccdc69coiled-coil domain containing 69103917328239200358Rat
628651Gm2aganglioside GM2 activator103921922139231756Rat
1309092Slc36a3solute carrier family 36, member 3103924353139273433Rat
620492Slc36a2solute carrier family 36 member 2103927800239306082Rat
619801Slc36a1solute carrier family 36 member 1103931906239357374Rat
620656Fat2FAT atypical cadherin 2103936407239456324Rat
40988159LOC120095103uncharacterized LOC120095103103948067139488982Rat
3742Sparcsecreted protein acidic and cysteine rich103951639439538252Rat
11464772LOC10835221840S ribosomal protein S28 pseudogene103954036739540682Rat
621684Atox1antioxidant 1 copper chaperone103956485539579892Rat
621140G3bp1G3BP stress granule assembly factor 1103958686439620268Rat
2704Glra1glycine receptor, alpha 1103962585339727897Rat
9452287LOC103693333protein UXT pseudogene103966901739671564Rat
1563668Hmgb1l5high mobility group box 1 like 5103976865839769408Rat
40937826LOC120093045small nucleolar RNA SNORA19103982357539823689Rat
621155Nmur2neuromedin U receptor 2104016622340182078Rat
7744446LOC102552546uncharacterized LOC102552546104017013640173126Rat
41038360LOC120095322uncharacterized LOC120095322104025667040258702Rat
41352469LOC120095323uncharacterized LOC120095323104026208740264143Rat
7567332Ralgdsl7ral guanine nucleotide dissociation stimulator like 7104026753640269571Rat
40999178LOC120095104ral guanine nucleotide dissociation stimulator-like104027925140281351Rat
41303192LOC120095324uncharacterized LOC120095324104031106940313092Rat
41010124LOC120093097ral guanine nucleotide dissociation stimulator-like104032300740325012Rat
7558982LOC102552882uncharacterized LOC102552882104050900640600404Rat
7625432LOC102553022uncharacterized LOC102553022104060050540667976Rat
41182758LOC120095105uncharacterized LOC120095105104093548841040947Rat
7555271LOC102553349uncharacterized LOC102553349104106391341126313Rat
621531Gria1glutamate ionotropic receptor AMPA type subunit 1104121071341527283Rat
41261840LOC120095106uncharacterized LOC120095106104129779141366702Rat
1305362Fam114a2family with sequence similarity 114, member A2104166178741696790Rat
1359463Mfap3microfibril associated protein 3104169678841711490Rat
69409Galnt10polypeptide N-acetylgalactosaminyltransferase 10104182121641967618Rat
1309585Sap30lSAP30-like104197973041992307Rat
621206Hand1heart and neural crest derivatives expressed 1104200664642009213Rat
1306683Larp1La ribonucleoprotein 1, translational regulator104219137842246361Rat
9281539Atp5mkl1ATP synthase membrane subunit K like 1104221167142212027Rat
1586284Faxdc2fatty acid hydroxylase domain containing 2104224580842271679Rat
1306401Cnot8CCR4-NOT transcription complex, subunit 8104228161442294740Rat
41075565Trnas-aga43transfer RNA serine (anticodon AGA) 43104228305442283127Rat
1586275Gemin5gem (nuclear organelle) associated protein 5104229572942342902Rat
1309277Mrpl22mitochondrial ribosomal protein L22104234544642355779Rat
7752480Igtpl1interferon gamma induced GTPase like 1104235964542367390Rat
1306896Igtpinterferon gamma induced GTPase104237459042382410Rat
2324125Irgm2immunity-related GTPase family M member 2104238945242399604Rat
41138833LOC120095409small nucleolar RNA SNORA5104239359942393734Rat
11407955LOC108352086uncharacterized LOC108352086104241545842424581Rat
13085644930438A08RiklRIKEN cDNA 4930438A08 gene like104245994842477215Rat
11474460Trnae-cuc5transfer RNA glutamic acid (anticodon CUC) 5104248446642484537Rat
1306740Zfp692zinc finger protein 692104248457642496573Rat
11450453Trnal-caa1transfer RNA leucine (anticodon CAA) 1104248475642484861Rat
1359094Zfp672zinc finger protein 672104249655842512134Rat
1590939Sh3bp5lSH3 binding domain protein 5 like104251243742529564Rat
41110839LOC120095469small nucleolar RNA U13104255508242555186Rat
1586251Lypd8Ly6/Plaur domain containing 8104256183442572684Rat
41208375Ybx1-ps15Y box binding protein 1, pseudogene 15104258527142587462Rat
1586234Bpifb9aBPI fold containing family B, member 9A104259582242600781Rat
3683Lypd8l1LY6/PLAUR domain containing 8 like 1104261555542623925Rat
1586225Lypd9LY6/PLAUR domain containing 9104262649942637182Rat
621541Or2z2olfactory receptor family 2 subfamily Z member 2104263822742639174Rat
1333036Or2av10olfactory receptor family 2 subfamily AV member 10104265575042656703Rat
1333245Or2av9olfactory receptor family 2 subfamily AV member 9104267389042674897Rat
2319558Stk17b-ps1serine/threonine kinase 17b, pseudogene 1104268398842685078Rat
1332603Or2t48eolfactory receptor family 2 subfamily T member 48E104269036842691297Rat
1333640Or2t48bolfactory receptor family 2 subfamily T member 48B104275874542759674Rat
1333422Or2t48olfactory receptor family 2 subfamily T member 48104278677542787719Rat
1334020Or2t48c-ps1olfactory receptor family 2 subfamily T member 48C, pseudogene 1104280110442802047Rat
1333651Or2t46-ps1olfactory receptor family 2 subfamily T member 46, pseudogene 1104282201942823149Rat
1333061Or2t47eolfactory receptor family 2 subfamily T member 47E104284249242843454Rat
1332615Or2t48dolfactory receptor family 2 subfamily T member 48D104285597242856916Rat
1333736Or2t47dolfactory receptor family 2 subfamily T member 47D104288311442884076Rat
1332688Or2t29olfactory receptor family 2 subfamily T member 29104290725942908197Rat
1332670Or2t47olfactory receptor family 2 subfamily T member 47104291754542918492Rat
9196653Or2t43olfactory receptor family 2 subfamily T member 43104293524842936195Rat
1333324Or2t51-ps1olfactory receptor family 2 subfamily T member 51, pseudogene 1104294152542941822Rat
1333013Olr1428olfactory receptor 1428104294735342948300Rat
1334074Or2t52-ps1olfactory receptor family 2 subfamily T member 52, pseudogene 1104295266342953022Rat
1332914Or2t29b-ps1olfactory receptor family 2 subfamily T member 29B, pseudogene 1104295849542959431Rat
1334088Or2ab1olfactory receptor family 2 subfamily AB member 1104298067942981626Rat
1585065Lypd8l2LY6/PLAUR domain containing 8 like 2104299023742995285Rat
1334164Or11l3olfactory receptor family 11 subfamily L member 3104300763343008604Rat
1566174Trim58tripartite motif-containing 58104302293343038984Rat
1332706Olr1433olfactory receptor 1433104304242743046293Rat
1333938Or2ak6eolfactory receptor family 2 subfamily AK member 6E104307288443073804Rat
1333898Or2ak5eolfactory receptor family 2 subfamily AK member 5E104308986543090782Rat
1332835Or2ak4olfactory receptor family 2 subfamily AK member 4104311703943117959Rat
1332708Or2ak6colfactory receptor family 2 subfamily AK member 6C104314892443149844Rat
1332797Or2ak5g-ps1olfactory receptor family 2 subfamily AK member 5G, pseudogene 1104316213243163041Rat
1334096Or2ak6olfactory receptor family 2 subfamily AK member 6104319966843200588Rat
1332945Or2ak5dolfactory receptor family 2 subfamily AK member 5D104321257143213491Rat
1584857Or2ak4folfactory receptor family 2 subfamily AK member 4F104324767043248539Rat
1332943Or2ak5folfactory receptor family 2 subfamily AK member 5F104326904643269960Rat
1333051Or2ak4eolfactory receptor family 2 subfamily AK member 4E104328914243290062Rat
1334234Olr1444-psolfactory receptor pseudogene 1444104329436443294561Rat
1334167Or2ak5bolfactory receptor family 2 subfamily AK member 5B104331019843311118Rat
1333716Or2ak4b-ps1olfactory receptor family 2 subfamily AK member 4B, pseudogene 1104332812743329042Rat
1333495Or2w26-ps1olfactory receptor family 2 subfamily W member 26, pseudogene 1104334022243341116Rat
1333911Or2ak5olfactory receptor family 2 subfamily AK member 5104335448643355406Rat
1332774Or2ak6bolfactory receptor family 2 subfamily AK member 6B104337354643374466Rat
1559534Eno1l3enolase 1 like 3104338160543382794Rat
1332690Or2ak4colfactory receptor family 2 subfamily AK member 4C104340272743403644Rat
1333743Olr1451olfactory receptor 1451104342914043430069Rat
1333990Or2t44bolfactory receptor family 2 subfamily T member 44B104343681843437807Rat
1334077Or2t45bolfactory receptor family 2 subfamily T member 45B104346277543463701Rat
1333852Olr1454olfactory receptor 1454104347132243472314Rat
1334053Or2t45olfactory receptor family 2 subfamily T member 45104348576443486693Rat
1334326Or2t44olfactory receptor family 2 subfamily T member 44104350363043504622Rat
1561932Cfap144cilia and flagella associated protein 144104350982343519693Rat
1333878Or5af1bolfactory receptor family 5 subfamily AF member 1B104352270643523632Rat
1332948Or5af1olfactory receptor family 5 subfamily AF member 1104354744743548373Rat
1334155Or5af1colfactory receptor family 5 subfamily AF member 1C104356238443563310Rat
1332809Or9e1olfactory receptor family 9 subfamily E member 1104357779443578720Rat
1583913Cfl2-ps1cofilin-2, pseudogene 1104359068543591177Rat
1333085Or9e1bolfactory receptor family 9 subfamily E member 1B104359542243596348Rat
1561277ZfplZinc finger protein like104360529543647137Rat
1306633Zfp39zinc finger protein 39104365644443679743Rat
1559732Btnl10butyrophilin like 10104369408343701800Rat
1308636Rnf187ring finger protein 187104370949343715392Rat
1307520Hist3h2bahistone cluster 3, H2ba104372583643726465Rat
1583885H2bu1H2B.U histone 1104373273743733484Rat
621437H2ac25H2A clustered histone 25104373370243735254Rat
1583877H3f4H3.4 histone, cluster member104374070243741262Rat
69290Trim17tripartite motif-containing 17104374311143750929Rat
7518371LOC102555997uncharacterized LOC102555997104374639043758445Rat
1305448Trim11tripartite motif-containing 11104375829943771138Rat
631335Obscnobscurin, cytoskeletal calmodulin and titin-interacting RhoGEF104377411343919718Rat
6495127LOC100911111uncharacterized LOC100911111104378210443786129Rat
1306000Iba57iron-sulfur cluster assembly factor IBA57104394201743950807Rat
1562712Gjc2gap junction protein, gamma 2104396264243971358Rat
1309638Guk1guanylate kinase 1104397151443988658Rat
1308161Mrpl55mitochondrial ribosomal protein L55104398867643991841Rat
1304587C10h1orf35similar to human chromosome 1 open reading frame 35104399380943997287Rat
621270Arf1ADP-ribosylation factor 1104399798344014461Rat
1308057Wnt3aWnt family member 3A104403417444078366Rat
1305018Wnt9aWnt family member 9A104409414044121134Rat
1565729Prss38serine protease 38104415933944163019Rat
7739209LOC102546363uncharacterized LOC102546363104416722244185891Rat
735194Snap47synaptosome associated protein 47104419288644234435Rat
1307186Jmjd4jumonji domain containing 4104423446544242754Rat
1642427Zfp867zinc finger protein 867104424481344255223Rat
11445698LOC108352088ferritin light chain 1 pseudogene104425750144258431Rat
6488615Rpl18-ps6ribosomal protein L18, pseudogene 6104426352344264312Rat
1304611Zfp496zinc finger protein 496104426892344287795Rat
1308314Nlrp3NLR family, pyrin domain containing 3104432677044353814Rat
1333777Or2b11olfactory receptor family 2 subfamily B member 11104435839744359353Rat
1333969Or2aa1olfactory receptor family 2 subfamily AA member 1104437470244375661Rat
1582743Sbds-ps2Sbds, ribosome maturation factor, pseudogene 2104438817644397730Rat
41404206LOC120095414small nucleolar RNA SNORA44104439895344399078Rat
1333308Or2w25-ps1olfactory receptor family 2 subfamily W member 25, pseudogene 1104440245444403521Rat
2318500Rpl15-ps6ribosomal protein L15, pseudogene 6104441792844418542Rat
619947Mpripmyosin phosphatase Rho interacting protein104445394944573843Rat
41123932LOC120095110uncharacterized LOC120095110104451549644532629Rat
1311987Pld6phospholipase D family, member 6104457853644581187Rat
735088Flcnfolliculin104458862144607808Rat
2323819Dctpp1-ps1dCTP pyrophosphatase 1, pseudogene 1104460856944609566Rat
1303002Cops3COP9 signalosome subunit 3104461811544652807Rat
41140516LOC120095427U1 spliceosomal RNA104462913344629286Rat
1309622Nt5m5',3'-nucleotidase, mitochondrial104465284544680549Rat
1563669Med9mediator complex subunit 9104475066744765464Rat
619727Rasd1ras related dexamethasone induced 1104476645144775773Rat
3297Pemtphosphatidylethanolamine N-methyltransferase104477591044849990Rat
41129985Dnaja1-ps3DnaJ heat shock protein family (Hsp40) member A1, pseudogene 3104480690744809907Rat
7593322LOC102549418uncharacterized LOC102549418104489281744907459Rat
1308500Rai1retinoic acid induced 1104491323145008232Rat
69423Srebf1sterol regulatory element binding transcription factor 1104500763745029650Rat
1306728Tom1l2target of myb1 like 2 membrane trafficking protein104503603445158168Rat
1309150Drc3dynein regulatory complex subunit 3104514909445200659Rat
1305161Atpaf2ATP synthase mitochondrial F1 complex assembly factor 2104520565845221891Rat
1588894Gid4GID complex subunit 4104522155645247627Rat
1597232Rps4x-ps6ribosomal protein S4, X-linked, pseudogene 6104525177645252623Rat
1562380Drg2developmentally regulated GTP binding protein 2104525551245269971Rat
1561873Myo15amyosin XVA104527761945335953Rat
1309496Alkbh5alkB homolog 5, RNA demethylase104534488845366331Rat
40980764LOC120095380U7 small nuclear RNA104535895345359015Rat
1585025Rpl17l5ribosomal protein L17 like 5104536201245364050Rat
3012Llgl1LLGL scribble cell polarity complex component 1104537942345394096Rat
1307590FliiFLII, actin remodeling protein104539403245408051Rat
40939199LOC120095412small nucleolar RNA SNORA15104539922545399351Rat
1560728Mief2mitochondrial elongation factor 2104540805545414144Rat
1309320Top3aDNA topoisomerase III alpha104541921945457356Rat
1564621Smcr8SMCR8-C9orf72 complex subunit104545796245465101Rat
1312011Shmt1serine hydroxymethyltransferase 1104546869845490833Rat
1559667Btf3-ps15basic transcription factor 3, pseudogene 15104550194645502810Rat
1311243Dhrs7bdehydrogenase/reductase 7B104550434445537094Rat
41280493LOC120095440small nucleolar RNA SNORA48104551515045515292Rat
1309817Tmem11transmembrane protein 11104554275345557570Rat
1307740Natd1N-acetyltransferase domain containing 1104558015445590333Rat
7501583LOC102546946uncharacterized LOC102546946104559053045595233Rat
9217344Map2k3osmitogen-activated protein kinase kinase 3, opposite strand104559739645607992Rat
1306620Map2k3mitogen activated protein kinase kinase 3104560814545629492Rat
621660Kcnj12potassium inwardly-rectifying channel, subfamily J, member 12104569662145745528Rat
41016043Slirp-ps1SRA stem-loop interacting RNA binding protein, pseudogene 1104577345245776821Rat
1595998Tnfrsf13bTNF receptor superfamily member 13B104580186045824932Rat
1310354Usp22ubiquitin specific peptidase 22104582861945855468Rat
41358298LOC120095435small nucleolar RNA SNORA48104587342045873560Rat
2088Aldh3a1aldehyde dehydrogenase 3 family, member A1104589299345902680Rat
41277494LOC120095325uncharacterized LOC120095325104590644445908310Rat
1566257Rras2-ps1RAS related 2, pseudogene 1104591671945917890Rat
61866Aldh3a2aldehyde dehydrogenase 3 family, member A2104592831345949366Rat
40961371LOC120095114uncharacterized LOC120095114104594910045983918Rat
41186043LOC120095413small nucleolar RNA SNORA44104598895845989086Rat
1562382Slc47a2solute carrier family 47 member 2104599080646033937Rat
1311123Slc47a1solute carrier family 47 member 1104603411546088617Rat
11493649Trnaw-cca2transfer RNA tryptophan (anticodon CCA) 2104609242146092492Rat
3986Rnf112ring finger protein 112104612114646126691Rat
40992345LOC120095256uncharacterized LOC120095256104615568546165890Rat
1307841Mfap4microfibril associated protein 4104616715846170176Rat
621505Mapk7mitogen-activated protein kinase 7104617026446176262Rat
1305522B9d1B9 domain containing 1104618622246196309Rat
619773Epn2epsin 2104619778546259673Rat
41339074Trnav-aac10transfer RNA valine (anticodon AAC) 10104628524046285312Rat
1306884GrapGRB2-related adaptor protein104629896546352057Rat
1305232Slc5a10solute carrier family 5 member 10104635206046400795Rat
2322345Fam83gfamily with sequence similarity 83, member G104636302946388030Rat
620207Prpsap2phosphoribosyl pyrophosphate synthetase-associated protein 2104641081746445929Rat
1310181Ulk2unc-51 like autophagy activating kinase 2104645157846530462Rat
1308869Akap10A-kinase anchoring protein 10104654537146608730Rat
40970460LOC120095356U6 spliceosomal RNA104656686946566969Rat
1309718Specc1sperm antigen with calponin homology and coiled-coil domains 1104663894746912989Rat
41161480LOC120095487U2 spliceosomal RNA104675164646751840Rat
9743990Selenow-ps1selenoprotein W, pseudogene 1104686871946869420Rat
2050Adora2badenosine A2B receptor104694039446956772Rat
1310324Zswim7zinc finger, SWIM-type containing 7104695331146969800Rat
1582808Ttc19tetratricopeptide repeat domain 19104696972346997607Rat
3612Ncor1nuclear receptor co-repressor 1104699953647142294Rat
620437Piglphosphatidylinositol glycan anchor biosynthesis, class L104714216047199892Rat
1565681Cenpvcentromere protein V104721447947228552Rat
1595962Tmed4-ps1transmembrane p24 trafficking protein 4, pseudogene 1104723234847236981Rat
621562Ubbubiquitin B104724763047249335Rat
41346003LOC120095326thymosin beta-4-like104725993647260671Rat
3965Trpv2transient receptor potential cation channel, subfamily V, member 2104726552447294263Rat
40947194LOC120095429small nucleolar RNA SNORA29104727211347272242Rat
41093985Snord49bsmall nucleolar RNA, C/D box 49B104729694647297016Rat
41005054Snord49asmall nucleolar RNA, C/D box 49A104729748847297559Rat
1595947Lrrc75aleucine rich repeat containing 75A104729822247343301Rat
40963995Snord65small nucleolar RNA, C/D box 65104729839147298462Rat
41388597LOC120095115uncharacterized LOC120095115104731848447332559Rat
1311260Mmgt2membrane magnesium transporter 2104734344647362889Rat
1308617Zfp287zinc finger protein 287104739565047415610Rat
11446408Trnaw-cca3transfer RNA tryptophan (anticodon CCA) 3104743153447431605Rat
40943474LOC120095502U6 spliceosomal RNA104743497547435080Rat
41327418LOC120095403small nucleolar RNA SNORA67104744813747448270Rat
1561950Zfp286azinc finger protein 286A104745046947461267Rat
1309749Trim16tripartite motif-containing 16104748598247509010Rat
1563889Fbxw10F-box and WD repeat domain containing 10104751331347551909Rat
41224105LOC120095495U4 spliceosomal RNA104753320347533317Rat
1586539Tvp23btrans-golgi network vesicle protein 23 homolog B104755378947565203Rat
41394133LOC120095116uncharacterized LOC120095116104758840047590766Rat
7527442LOC102552952uncharacterized LOC102552952104761660147625398Rat
2323961Cdrt4CMT1A duplicated region transcript 4104762547047657493Rat
1310582Tekt3tektin 3104772963547763589Rat
3359Pmp22peripheral myelin protein 22104779570947825715Rat
2321712Ubbl2ubiquitin B like 2104791045847910703Rat
40937829LOC120095507U6 spliceosomal RNA104840259048402695Rat
41034231LOC120095117uncharacterized LOC120095117104853219348539710Rat
1307326Hs3st3b1heparan sulfate-glucosamine 3-sulfotransferase 3B1104856147348593970Rat
1594623Cox10cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10104863099348742805Rat
41035134LOC120095119uncharacterized LOC120095119104869289748706492Rat
41257203LOC120095118uncharacterized LOC120095118104874285148746665Rat
41221742Trnaq-cugtransfer RNA glutamine (anticodon CUG)104880306848803140Rat
1561262Hs3st3a1heparan sulfate-glucosamine 3-sulfotransferase 3A1104909285049180676Rat
41348016LOC120095120uncharacterized LOC120095120104917405949180284Rat
628882Elac2elaC ribonuclease Z 2104963230849655614Rat
1305664Arhgap44Rho GTPase activating protein 44104965558349822876Rat
631347Myocdmyocardin104983321949928806Rat
40945377LOC120095121uncharacterized LOC120095121104990525749908359Rat
7523178LOC102554159uncharacterized LOC102554159105004628650199221Rat
1307040Map2k4mitogen activated protein kinase kinase 4105034322750447956Rat
1305130Zfp18zinc finger protein 18105047342850495707Rat
621799Dnah9dynein, axonemal, heavy chain 9105049617450864909Rat
40931177LOC120095122uncharacterized LOC120095122105086476351013804Rat
1564618Shisa6shisa family member 6105089774051192111Rat
7554930LOC102554448glyceraldehyde-3-phosphate dehydrogenase-like105123287851233686Rat
1587327Rps2-ps29ribosomal protein S2, pseudogene 29105126154451262251Rat
1561050Eno1-ps14enolase 1, pseudogene 14105129963251300633Rat
6499408Rpl15-ps7ribosomal protein L15, pseudogene 7105144754451448165Rat
1563963Pgam1-ps11phosphoglycerate mutase 1, pseudogene 11105144914151480570Rat
41236741LOC120095342histidine triad nucleotide-binding protein 1-like105158249551582818Rat
41127486LOC120095442small nucleolar RNA SNORA48105159446451594601Rat
7616564LOC102554726uncharacterized LOC102554726105160857151614414Rat
1565284Pirtphosphoinositide-interacting regulator of transient receptor potential channels105161320251628108Rat
40983152LOC120095123uncharacterized LOC120095123105162571051701636Rat
7617190Tmem238ltransmembrane protein 238 like105164787151662206Rat
1309576Tmem220transmembrane protein 220105171977751728792Rat
1309906AdprmADP-ribose/CDP-alcohol diphosphatase, manganese-dependent105173207351744635Rat
1559538Sco1synthesis of cytochrome C oxidase 1105174465651757246Rat
3138Myh3myosin heavy chain 3105177017751793994Rat
9197903LOC103693350uncharacterized LOC103693350105180120951831435Rat
620354Myh2myosin heavy chain 2105185673851883236Rat
735061Myh1myosin heavy chain 1105188591351909699Rat
7738523LOC102555216uncharacterized LOC102555216105189490251922950Rat
3139Myh4myosin heavy chain 4105192314951946297Rat
620356Myh8myosin heavy chain 8105196351051993103Rat
3137Myh13myosin heavy chain 13105201277952068960Rat
9146354Atp5mk-ps1ATP synthase membrane subunit K, pseudogene 1105213203452140860Rat
621550Gas7growth arrest specific 7105215271852383283Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10792D10Wox10850103840624038407090Ratregion
10794D10Mgh9124103777589037776020Ratregion
10795D10Wox9182103777583737776025Ratregion
10874D10Rat83154104539382945394002Ratregion
10949D10Wox11150105178628251786432Ratregion
33909D10Mit4176103539226735392457Ratregion
34053D10Mit3150104003509440035242Ratregion
34359D10Mgh11138102929950429299638Ratregion
34669D10Mgh20172105177444051774612Ratregion
34677D10Mgh19100103063149230631600Ratregion
33565D10Mit9238103122402631224268Ratregion
35571D10Rat35147103167468831674835Ratregion
36067D10Rat38170103096480030964974Ratregion
37286D10Rat222183105146576951465948Ratregion
37454D10Rat82192103222339032223584Ratregion
36886D10Rat32168105177966251779830Ratregion
37082D10Rat223238104160339441603638Ratregion
37772DXRat53279104843223948432272Ratregion
37800D10Rat81221104807536348075571Ratregion
37842D10Rat85241104749400047494261Ratregion
37914D10Rat125237104577900645779243Ratregion
37986D10Rat116146105220003052200160Ratregion
36496D10Rat37179103397392133974100Ratregion
36721D10Rat40184102898094628981111Ratregion
34803D10Rat62126104990028749900435Ratregion
35040D10Rat39170102962646529626644Ratregion
35587D10Rat63160104593929545939457Ratregion
35731D10Rat33180103665256936652738Ratregion
35751D10Rat167383103908573139086127Ratregion
35751D10Rat167383103908573139086272Ratregion
35751D10Rat167383103908586439086127Ratregion
35829D10Rat31133105161152951611661Ratregion
38102D10Rat102233105050909650509331Ratregion
38162D10Rat129211103389769133897901Ratregion
38292D10Rat73178104488647444886644Ratregion
40542D10Rat175146103706987937070007Ratregion
40626D10Rat172246103680015636800408Ratregion
40650D10Rat165227104136187541362094Ratregion
38446D10Rat130200104078865340788859Ratregion
38532D10Rat126206104148202241482228Ratregion
38588D10Rat76205103779507737795298Ratregion
40302D10Rat162157104944455149444706Ratregion
38824D10Rat78213104194452641944739Ratregion
39038D10Rat104214104066775440667928Ratregion
39102D10Rat71201102887565028875843Ratregion
39148D10Rat173214103624440236244613Ratregion
41934D10Arb2432103671684636717314Ratregion
41941D10Arb5398105177954851779942Ratregion
41370D10Rat170135103975201339752150Ratregion
41394D10Rat16475104204567642045739Ratregion
41422D10Rat163224104794067647940913Ratregion
41422D10Rat163224104794067647941262Ratregion
41422D10Rat163224104794087147940913Ratregion
42908D10Rat253135102930956729309696Ratregion
42910D10Rat250213103351360133513811Ratregion
42912D10Rat214210103663022336630427Ratregion
42915D10Rat249239103896261838962867Ratregion
42916D10Rat247212104209333542093534Ratregion
42917D10Rat248214104153338541533591Ratregion
42919D10Rat245377104766646947666827Ratregion
42368D10Rat246220104155282941553060Ratregion
40890D10Rat166144104246758542467735Ratregion
40978D10Rat168241103772937437729617Ratregion
41732D10Rat224148103252655932526706Ratregion
44714D10Got44135102906082629060961Ratregion
44715D10Wox26170102965946229659617Ratregion
44716D10Got50211103049313930493350Ratregion
44718D10Got47210103010782530108035Ratregion
44719D10Got51146103034131630341462Ratregion
44724D10Got53202103091925930919461Ratregion
44727D10Got52118103127302631273141Ratregion
44728D10Got54282103251301832513300Ratregion
44729D10Got58217103646085536461072Ratregion
44730D10Got61206103940499139405197Ratregion
44731D10Got60239103916881139169050Ratregion
44732D10Wox25113103982373339823846Ratregion
44733D10Got63163104041321340413376Ratregion
44735D10Got64187104119884041199027Ratregion
44736D10Got67223104153463341534858Ratregion
44737D10Got65249104158337041583617Ratregion
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5089219AU049026231103628098336281214Ratregion
5089485AU049183267104438869644388963Ratregion
5090621AU049862212105181872551818937Ratregion
5090629AU049867223104152334341523566Ratregion
5083743AI237790199104644694446447143Ratregion
5083921AI230942199104517491045175109Ratregion
5089667AU049292279103054695230547231Ratregion
5081589BF420643111103589810935898220Ratregion
5084448AI233944250103868990538691001Ratregion
5084558AA851253109104729832247298431Ratregion
5084606AI409913152103936411639364268Ratregion
5084748AI102757130103223501932235149Ratregion
5090087AU049542268104559090545591171Ratregion
5090175AU049595218104126112841261344Ratregion
5087592PMC357045P11381104459084144591222Ratregion
5087596PMC357045P2737104460036644601103Ratregion
5087600PMC357045P4232104460023344600465Ratregion
5087606PMC357045P8259104459530344595562Ratregion
5084836AA800048136104379187843792014Ratregion
5084886AI229478215104868436348684578Ratregion
5084904AI172313181103865038238650563Ratregion
5082213BI280765196103959294739593143Ratregion
5082447BE119429162104745052947450691Ratregion
5085365BQ210088200103856702038567220Ratregion
5085437BM383035196105047967050479866Ratregion
5085459AW535242188103742708437427272Ratregion
5090663AU049887142103669629336696435Ratregion
5090763AU049949265103992648339926748Ratregion
5080794RH141785205103035204630352251Ratregion
5080930RH141865183105180219451802377Ratregion
5085104AW524490140104173573941735879Ratregion
5090475AU049772172104847292148473095Ratregion
5090529AU049805162103908104339081205Ratregion
5081068RH141946205103117465731174867Ratregion
5085523BQ203079154103113252931132683Ratregion
5085591BI276688169104691029646910465Ratregion
5085631BM390633207104016668840166896Ratregion
5090273AU049653154103619821136198365Ratregion
5089141AU048979275103340646633406739Ratregion
5085884BQ204256209104195000441950213Ratregion
5086002AA891123176104609290046093076Ratregion
5086020BF387670216104249288842493104Ratregion
5084570AI177674148104582458545824733Ratregion
5086361AW252989181104399547343995834Ratregion
5081098RH141963182104609941046099592Ratregion
5081180RH142011189105196755051967738Ratregion
5081272RH142065204103402671034026914Ratregion
5084956AI180289134103594888935949023Ratregion
5086520AI013997199104583002345830222Ratregion
5086646BM388061202104392550443925706Ratregion
5081444AI555089211103554151235541723Ratregion
5083469BI282301165104574322645743391Ratregion
5083577BI276296160103827175038271913Ratregion
5081867AA900513184103470251834702702Ratregion
5081897BE118696185104365646643656651Ratregion
5081915BE118744176103915400839154184Ratregion
5083835AA893014176104660925346609430Ratregion
5084066AI011711106104983347849833584Ratregion
5502585RH125439201104207698942077190Ratregion
5502585RH125439201104207698942077190Ratregion
5503054Wnt3a517104403468644035203Ratregion
5503720U2AF2_79990104207694442077115Ratregion
5504488PMC22838P1107103635830036358407Ratregion
5504488PMC22838P1107103635830036358407Ratregion
5504264G43520134103469750234697636Ratregion
5504676PMC355839P4217102888864528888862Ratregion
5504582PMC309615P1294104984991949850213Ratregion
5505300Ppp2ca51103637385836373905Ratregion
5505402Map2k4964105034345050344414Ratregion
5505472REN71571232103770552737705759Ratregion
5505474REN71570248103770573337705981Ratregion
5504674PMC355839P1734102889665628897391Ratregion
5505028Mapk7683104617453746175220Ratregion
5505192Gdf9116103759577937595895Ratregion
5505592UniSTS:485100936103380071933801655Ratregion
5505476REN71795259103764381037644069Ratregion
5505478REN72054232103757869737578929Ratregion
5505752UniSTS:492595569103687785136878420Ratregion
5505792UniSTS:493827168104859282948592997Ratregion
5506015UniSTS:497306487104499419344994680Ratregion
5506017UniSTS:497308701104500636545007066Ratregion
5506121UniSTS:498411661103642443436425095Ratregion
5506551MAP2K3_360952104562841745629369Ratregion
5506855G46608165103061257830612743Ratregion
5506877G47089187103480567834805865Ratregion
5506664ECD02756822103764405137644873Ratregion
5506891G47349249104472996444730215Ratregion
5507097UniSTS:224506216103520989135210107Ratregion
5499517stSG6106050103025484130256125Ratregion
5500077UniSTS:236582239104170606741706306Ratregion
5499495stSG6016100103755212937553740Ratregion
5501153PMC150745P1109104984955449849663Ratregion
5500258D3S3187982102945838829459370Ratregion
5500210G67083553104617446146175014Ratregion
5500075UniSTS:236593204104541329145413495Ratregion
5502435RH124832125103623117136231296Ratregion
5500677RH136619186103883714438837330Ratregion
5500541RH1359121406104224148042242886Ratregion
5500883RH65703141103741944537420560Ratregion
5500953MARC_9845-9846:996688657:10103032612030326760Ratregion
5500444fd14a01.x1290105197756651977856Ratregion
5503754UniSTS:469818271104617028246170553Ratregion
5501045PMC126018P10103642777236428998Ratregion
5501303D8S281707104554151045542217Ratregion
5501173PMC151926P2565103951707139518238Ratregion
5501295D11S2605145103300074833000893Ratregion
5501592RH1133983104972087249720955Ratregion
5501884MARC_16763-16764:1020874272:1494103752351737524011Ratregion
5501659UniSTS:265529431103916170839162139Ratregion
5501662UniSTS:265579123105194613751946260Ratregion
5506056UniSTS:498260427105049454150494968Ratregion
5502752SOX3098103042119530421293Ratregion
550279721STS02197103062132230621519Ratregion
11528625rs105872339104507661145076611Ratregion
11528626rs198350962104417977044179770Ratregion
11528627rs105202638104563297345632973Ratregion
11528629rs105809441104494716344947163Ratregion
11528630rs106226950104543393345433933Ratregion
152025221rs662993630105166340551663405Ratregion
152025228rs1057456890103571058035710580Ratregion
152025226rs639921500104698969946989699Ratregion
Position Markers

Flank 1: (D10Rat71)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21028,875,650 - 28,875,843 (+)MAPPER
Rnor_6.01030,021,354 - 30,021,546NCBI
Rnor_5.01029,855,098 - 29,855,290UniSTS
RGSC_v3.41029,541,648 - 29,541,841RGD
RGSC_v3.41029,541,649 - 29,541,841UniSTS
RGSC_v3.11029,542,698 - 29,542,890RGD
Celera1028,355,682 - 28,355,874UniSTS
RH 3.4 Map10308.2RGD
RH 3.4 Map10308.2UniSTS
RH 2.0 Map10328.2RGD
SHRSP x BN Map1029.52RGD
Cytogenetic Map10q21UniSTS
Peak: (D10Rat71)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21028,875,650 - 28,875,843 (+)MAPPER
Rnor_6.01030,021,354 - 30,021,546NCBI
Rnor_5.01029,855,098 - 29,855,290UniSTS
RGSC_v3.41029,541,648 - 29,541,841RGD
RGSC_v3.41029,541,649 - 29,541,841UniSTS
RGSC_v3.11029,542,698 - 29,542,890RGD
Celera1028,355,682 - 28,355,874UniSTS
RH 3.4 Map10308.2RGD
RH 3.4 Map10308.2UniSTS
RH 2.0 Map10328.2RGD
SHRSP x BN Map1029.52RGD
Cytogenetic Map10q21UniSTS
Flank 2: (D10Rat116)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21052,200,030 - 52,200,160 (+)MAPPER
Rnor_6.01054,057,616 - 54,057,745NCBI
Rnor_5.01053,807,244 - 53,807,373UniSTS
RGSC_v3.41054,220,109 - 54,220,239RGD
RGSC_v3.41054,220,110 - 54,220,239UniSTS
RGSC_v3.11054,233,732 - 54,233,862RGD
Celera1051,381,591 - 51,381,720UniSTS
SHRSP x BN Map1045.3799RGD
SHRSP x BN Map1045.3799UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
152025227Bw195Body weight QTL 1955.73body mass (VT:0001259)104698969968663659Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
1578762Toxo1Toxoplasma gondii resistance QTL 1brain integrity trait (VT:0010579)percentage of study population displaying Toxoplasma gondii brain cysts at a point in time (CMO:0002028)105220003059378278Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103449055945579777Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
11528631Bss117Bone structure and strength QTL 1176.414e-07femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)104494716345433933Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
11528628Bss116Bone structure and strength QTL 1166.464e-07femur morphology trait (VT:0000559)femur length (CMO:0000442)104417977045632973Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)102795762634490668Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_general number of animals used: 187 1599317
qtl_general gender: 53-58 days old virgin females 1599317
qtl_general allele responsible: WKY allele reduces aggressiveness 1599317
qtl_general inducing agent and dosage: single dosage of DMBA, 65mg/kg 1599317