Mamtr5 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Mamtr5 (Mammary tumor resistance QTL 5) Rattus norvegicus

Symbol: Mamtr5
Name: Mammary tumor resistance QTL 5
RGD ID: 1600358
Previously known as: mammary cancer susceptibility, tumor multiplicity 1; Mcstm1
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2518,873,947 - 63,873,947RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0518,847,913 - 63,847,913RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0523,635,353 - 68,635,353RGDRnor5.0
RGSC_v3.4519,206,257 - 64,206,257RGDRGSC3.4
RGSC_v3.1519,206,258 - 64,206,258RGD
Cross Type: Not Available
Strains Crossed: SPRD.WKY-(D5Rat190-D5Rat114)/Ibmm 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Mammary cancer resistance and precocious mammary differentiation in the WKY rat: identification of 2 quantitative trait loci. Lella V, etal., Int J Cancer. 2007 Oct 15;121(8):1738-43.
2. Isolation of two regions on rat chromosomes 5 and 18 affecting mammary cancer susceptibility. Stieber D, etal., Int J Cancer. 2007 Jan 17;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1563403Fam110bfamily with sequence similarity 110, member B51878936218929647Rat
6501591Rack1-ps1receptor for activated C kinase 1, pseudogene 151898710018990913Rat
1565372Ube2cl1ubiquitin-conjugating enzyme E2C like 151899814819001967Rat
2321512Ap4s1-ps1adaptor related protein complex 4 subunit sigma 1, pseudogene 151908004319081080Rat
1308557Ubxn2bUBX domain protein 2B51930363419333181Rat
2482Cyp7a1cytochrome P450 family 7 subfamily A member 151937697919386676Rat
7640679LOC102549899uncharacterized LOC10254989951943565319454889Rat
621497Sdcbpsyndecan binding protein51947349919517188Rat
727868Nsmafneutral sphingomyelinase activation associated factor51951779519578773Rat
41347757G3bp1-ps2G3BP stress granule assembly factor 1, pseudogene 251973493319737218Rat
41046326LOC120103295small nucleolar RNA SNORA1751981437419814505Rat
1310455Toxthymocyte selection-associated high mobility group box51987499420171272Rat
41359748LOC120103345small nucleolar RNA SNORA1752095404020954161Rat
1560994Eif1-ps8eukaryotic translation initiation factor 1, pseudogene 852109854621099214Rat
1304709Car8carbonic anhydrase 852130294021402395Rat
1563301Rps16-ps4ribosomal protein S16, pseudogene 452152477121525259Rat
11375408LOC108350928uncharacterized LOC10835092852157041721574912Rat
7526543LOC102551006uncharacterized LOC10255100652158814221628171Rat
41142696LOC120103375U4 spliceosomal RNA52160213121602278Rat
68323Rab2aRAB2A, member RAS oncogene family52167601721740035Rat
1311921Chd7chromodomain helicase DNA binding protein 752181200721995358Rat
11374185LOC108350929uncharacterized LOC10835092952190195421930923Rat
7729019LOC102552020uncharacterized LOC10255202052204894322052627Rat
1586092LOC366310pseudogene for small nuclear RNA U3 (H3.9)52206501822065142Rat
11517987LOC10835108140S ribosomal protein S18 pseudogene52206558922074840Rat
2324828Psmd1-ps1proteasome 26S subunit, non-ATPase 1, pseudogene 152208005922092892Rat
9685089Lnc056long non-coding RNA 05652216267422163117Rat
11449903LOC108350931uncharacterized LOC10835093152222723222235944Rat
41350556LOC120103214U6 spliceosomal RNA52234882522348930Rat
41281883LOC120102821uncharacterized LOC12010282152237056722384103Rat
1564200Clvs1clavesin 152240838422604281Rat
1312000Asphaspartate-beta-hydroxylase52260158122814107Rat
41020171LOC120102822uncharacterized LOC12010282252265484222679142Rat
41055096LOC120102823uncharacterized LOC12010282352269711922704317Rat
9272632LOC103692300uncharacterized LOC10369230052291604222921564Rat
620104Gdf6growth differentiation factor 652299624623012567Rat
40938154LOC120102824uncharacterized LOC12010282452301332023022049Rat
2321121Mtrfr-ps1mitochondrial translation release factor in rescue, pseudogene 152378676823787484Rat
11400924Trnas-aga1transfer RNA serine (anticodon AGA) 152399628823996369Rat
1549749Cfap418cilia and flagella associated protein 41852399639524015609Rat
41188737LOC120102826uncharacterized LOC12010282652401469424029945Rat
41063004LOC120102825uncharacterized LOC12010282552402767024031806Rat
41081239LOC120102827uncharacterized LOC12010282752403682024043057Rat
7629665LOC102555924uncharacterized LOC10255592452406921124077248Rat
1312029Plekhf2pleckstrin homology and FYVE domain containing 252409107724106758Rat
11434367LOC108350932uncharacterized LOC10835093252410676124123754Rat
1586091Rpl11-ps4ribosomal protein L11, pseudogene 452413611524136752Rat
11503786LOC108351119ferritin light chain 1 pseudogene52414242024143026Rat
1309085Ndufaf6NADH:ubiquinone oxidoreductase complex assembly factor 652414771224171981Rat
631423Tp53inp1tumor protein p53 inducible nuclear protein 152425398624272250Rat
1307783Ccne2cyclin E252428507824298258Rat
1310592Ints8integrator complex subunit 852429554224344642Rat
1305828Dpy19l4dpy-19 like 452435128924410932Rat
1560481Esrp1epithelial splicing regulatory protein 152442761124482157Rat
6495230Rps23-ps1ribosomal protein S23, pseudogene 152451555924516265Rat
7747666Eno1-ps21enolase 1, pseudogene 2152453842024540101Rat
1588818Rpl24l2ribosomal protein L24 like 252454271424543178Rat
1564278Rnps1-ps5RNA binding protein with serine rich domain 1, pseudogene 552463041024632144Rat
9116417Dlgap5l1DLG associated protein 5 like 152467117324720087Rat
41314783St13-ps6ST13, Hsp70 interacting protein, pseudogene 652468005024684165Rat
1559441Cd99l4CD99 molecule like 452472267224769964Rat
9472653Dlg5l7discs large MAGUK scaffold protein 5 like 752480548324812407Rat
41101046LOC120102830uncharacterized LOC12010283052486926424872255Rat
41388173Wsb1-ps1WD repeat and SOCS box-containing 1, pseudogene 152488168824891528Rat
1559904Virmavir like m6A methyltransferase associated52496120825024660Rat
41020351LOC120103356U6atac minor spliceosomal RNA52500862725008726Rat
1306507Rad54bRAD54 homolog B52503211225104630Rat
7611658Fsbpfibrinogen silencer binding protein52505800325064276Rat
2320072Eif5-ps4eukaryotic translation initiation factor 5, pseudogene 452514896325152683Rat
7638920LOC102552309uncharacterized LOC10255230952515280525154273Rat
1307386GemGTP binding protein overexpressed in skeletal muscle52521430925225222Rat
619748Cdh17cadherin 1752526282025314884Rat
7731407LOC102552377uncharacterized LOC10255237752527333925289529Rat
620393Pdp1pyruvate dehydrogenase phosphatase catalytic subunit 152544684325455107Rat
1586167Tmem67transmembrane protein 6752553645825589378Rat
41100894LOC120102832RNA-binding protein 12B-A-like52559050025597273Rat
1307658Rbm12bRNA binding motif protein 12B52559740525610324Rat
1310681Cibar1CBY1 interacting BAR domain containing 152561399325632440Rat
1561260Triqktriple QxxK/R motif containing52639151126464422Rat
40972884LOC120102833uncharacterized LOC12010283352646198526467263Rat
41277993Trnat-agu10transfer RNA threonine (anticodon AGU) 1052693417726934249Rat
41195959Runx1t1lRUNX1 partner transcriptional co-repressor 1 like52716768927188550Rat
1305490Runx1t1RUNX1 partner transcriptional co-repressor 152718767427338070Rat
11398785LOC10835112060S ribosomal protein L17 pseudogene52746049327461058Rat
41114922LOC120103328small nucleolar RNA SNORA1752751011927510246Rat
11472967LOC10835112160S ribosomal protein L29 pseudogene52753782727538390Rat
41226688LOC120102835uncharacterized LOC12010283552755964727586169Rat
41209789LOC120103334small nucleolar RNA SNORA1752765310727653215Rat
1597419Dnaja1-ps2DnaJ heat shock protein family (Hsp40) member A1, pseudogene 252781036927811537Rat
1310846Slc26a7solute carrier family 26 member 752788440028021865Rat
1583733Lrrc69leucine rich repeat containing 6952802359128181963Rat
1310024Otud6bOTU deubiquitinase 6B52818199228214486Rat
1306225Pip4p2phosphatidylinositol-4,5-bisphosphate 4-phosphatase 252825982128307225Rat
6487307C5h8orf88similar to human chromosome 8 open reading frame 8852833016728355691Rat
708548Necab1N-terminal EF-hand calcium binding protein 152835785928578642Rat
11444056LOC108350937ferritin light chain 1 pseudogene52843074328431569Rat
41166424LOC120103363U2 spliceosomal RNA52849750128497630Rat
40956040Bex4-ps2brain expressed X-linked 4, pseudogene 252862147428684995Rat
1596128Tmem64transmembrane protein 6452869894728745384Rat
40941923LOC120102836uncharacterized LOC12010283652871884128768110Rat
41307010LOC120103144uncharacterized LOC12010314452903259729047722Rat
69340Calb1calbindin 152937562429402532Rat
41208256LOC120103326small nucleolar RNA SNORA1752940795329408081Rat
70999Decr12,4-dienoyl-CoA reductase 152941117229439054Rat
2318778Mrpl30-ps6mitochondrial ribosomal protein L30, pseudogene 652944778629448371Rat
621420Nbnnibrin52945957429494152Rat
1306323Osgin2oxidative stress induced growth inhibitor family member 252950040629519340Rat
41174538Tuba2l-ps1tubulin, alpha 2 like, pseudogene 152951187629518964Rat
1586088Gabpb2-ps1GA binding protein transcription factor subunit beta 2, pseudogene 152959621329605030Rat
1309167Ripk2receptor-interacting serine-threonine kinase 252963080629662804Rat
41355203LOC120102838uncharacterized LOC12010283852966282929715416Rat
1593555Cnga4-ps1cyclic nucleotide gated channel subunit alpha 4, pseudogene 152971705229718455Rat
1565988Bhmt-ps1betaine-homocysteine S-methyltransferase, pseudogene 153036296530390524Rat
2318973Ppp1cc-ps1protein phosphatase 1 catalytic subunit gamma, pseudogene 153045623330458067Rat
1593494Eif5-ps9eukaryotic translation initiation factor 5, pseudogene 953067638330677491Rat
40944019LOC120103219U6 spliceosomal RNA53105101031051115Rat
620199Mmp16matrix metallopeptidase 1653131228031556276Rat
41032391Trnap-agg53transfer RNA proline (anticodon AGG) 5353214375232143824Rat
41312846LOC120103244U7 small nuclear RNA53215196932152031Rat
1592300Cnbd1cyclic nucleotide binding domain containing 153223400332606765Rat
7556989Ormdl1-ps2ORMDL sphingolipid biosynthesis regulator 1, pseudogene 253263950232645632Rat
1565364Cngb3cyclic nucleotide gated channel subunit beta 353274698832995121Rat
1310178Cpne3copine 353301465833063934Rat
1563085Rmdn1regulator of microtubule dynamics 153307026733093922Rat
1311734Wwp1WW domain containing E3 ubiquitin protein ligase 153309237933185887Rat
41222336Pym1-ps15PYM homolog 1, exon junction complex associated factor, pseudogene 1553314213433146238Rat
11366942LOC10835108560S ribosomal protein L13 pseudogene53319174133201352Rat
1311633Slc7a13solute carrier family 7 member 1353327740033298186Rat
1306900Atp6v0d2ATPase H+ transporting V0 subunit D253333625733385354Rat
3915Ttpaalpha tocopherol transfer protein53349753733518936Rat
2682Gghgamma-glutamyl hydrolase53352988033552790Rat
41124986LOC120103374U4 spliceosomal RNA53356421533564342Rat
1591051Nkain3Sodium/potassium transporting ATPase interacting 353361372034310090Rat
9444073Hdac1-ps1histone deacetylase 1, pseudogene 153406494734076063Rat
1585101Casp3-ps4caspase 3, pseudogene 453455824334559081Rat
41075750LOC120103316small nucleolar RNA SNORA1753460649634606629Rat
1589948Atp5po-ps1ATP synthase peripheral stalk subunit OSCP, pseudogene 153510828035108914Rat
6495713Rps18-ps1ribosomal protein S18, pseudogene 153514547535145950Rat
41102833LOC120103292small nucleolar RNA SNORA4853517650435176637Rat
1589883Prdm13PR/SET domain 1353522081535232866Rat
41134945LOC120102842uncharacterized LOC12010284253526381335266767Rat
70905Ccnccyclin C53526682835284943Rat
1563572Tstd3thiosulfate sulfurtransferase like domain containing 353529465235304093Rat
1310976Usp45ubiquitin specific peptidase 4553531862135392090Rat
1307395PnisrPNN interacting serine and arginine rich protein53539596535422852Rat
2324520Kat2b-ps1lysine acetyltransferase 2B, pseudogene 153542640735428184Rat
2380Coq3coenzyme Q3 methyltransferase53542956735460613Rat
1562449Faxcfailed axon connections homolog, metaxin like GST domain containing53548013735539741Rat
41243557Wee2-ps1WEE2 oocyte meiosis inhibiting kinase, pseudogene 153555171635553140Rat
41222628LOC120102844uncharacterized LOC12010284453583956535843140Rat
2324327Pcnp-ps1PEST proteolytic signal containing nuclear protein, pseudogene 153584625835848205Rat
1305724Fbxl4F-box and leucine-rich repeat protein 453595580136029446Rat
40985493LOC120103329small nucleolar RNA SNORA1753599237635992505Rat
61946Pou3f2POU class 3 homeobox 253607793036083838Rat
7513176LOC102553820uncharacterized LOC10255382053608558836089407Rat
41322375LOC120102845uncharacterized LOC12010284553609136236095251Rat
1586399Nsa2-ps10NSA2 ribosome biogenesis factor, pseudogene 1053789234137897149Rat
1304693Mms22lMMS22-like, DNA repair protein53819770738313745Rat
1310364Klhl32kelch-like family member 3253832123738568453Rat
6492721LOC100911464glutathione S-transferase P-like53858666738592201Rat
735162Ndufaf4NADH:ubiquinone oxidoreductase complex assembly factor 453860516938610341Rat
9225019LOC10369524660S ribosomal protein L39-like53864218238642839Rat
1306460Gpr63G protein-coupled receptor 6353867254838727224Rat
41317448LOC120103335small nucleolar RNA SNORA1753887785038877982Rat
1307056Fhl5four and a half LIM domains 553890794138956759Rat
1309308Ufl1Ufm1-specific ligase 153896272138995134Rat
41335677LOC120103222U6 spliceosomal RNA53903012139030224Rat
41133959LOC120103304small nucleolar RNA SNORA1753928202539282156Rat
619955Fut9fucosyltransferase 953935181539565256Rat
620327Maneamannosidase, endo-alpha54019637340218540Rat
1585166Slc25a36-ps1solute carrier family 25 member 36, pseudogene 154026254740295229Rat
6490958Rps6-ps1ribosomal protein S6, pseudogene 154031268240313404Rat
41145764LOC120103388U6 spliceosomal RNA54068212540682231Rat
41006368LOC120103311U2 spliceosomal RNA54123388541233967Rat
2322518Dpy30-ps2dpy-30 histone methyltransferase complex regulatory subunit, pseudogene 254222778342228049Rat
41294829LOC120103330small nucleolar RNA SNORA1754253603042536158Rat
41358655Rpl6-ps2ribosomal protein L6, pseudogene 254259253142593424Rat
1584049Arl6-ps1ADP-ribosylation factor like GTPase 6, pseudogene 154284114642841746Rat
70957Epha7Eph receptor A754297535343128703Rat
41262738LOC120103208U6 spliceosomal RNA54304813943048245Rat
41256844LOC120102846uncharacterized LOC12010284654308424543103773Rat
1562265Rps12l5ribosomal protein S12 like 554361252843612958Rat
41151486LOC120103355U2 spliceosomal RNA54409051344090680Rat
41394701LOC120102847uncharacterized LOC12010284754485879044922780Rat
9283972LOC103692326uncharacterized LOC10369232654599237845995040Rat
41149442LOC120102848uncharacterized LOC12010284854604083146066269Rat
11388087LOC108350944uncharacterized LOC10835094454631252546332473Rat
1309438Map3k7mitogen activated protein kinase kinase kinase 754635697346415597Rat
41237335LOC120103146uncharacterized LOC12010314654643085646432860Rat
41352216LOC120102849uncharacterized LOC12010284954659689946619460Rat
1562865Bach2BTB domain and CNC homolog 254663233846982676Rat
1309630Gja10gap junction protein, alpha 1054699105147002902Rat
41044339LOC120102851uncharacterized LOC12010285154699298847009537Rat
1305771Casp8ap2caspase 8 associated protein 254701450147052276Rat
1306394Mdn1midasin AAA ATPase 154705543547190426Rat
1583731Ankrd6ankyrin repeat domain 654719798147343183Rat
1597334Lyrm2LYR motif containing 254719819247200470Rat
9434881Ggact-ps3gamma-glutamylamine cyclotransferase, pseudogene 354734324847355132Rat
1310007RragdRas-related GTP binding D54737390247409369Rat
11389431LOC108350947uncharacterized LOC10835094754741423947422384Rat
1305067Ube2j1ubiquitin-conjugating enzyme E2, J154742247647441476Rat
7504318Rpp38-ps1ribonuclease P/MRP subunit p38, pseudogene 154744411947445294Rat
61902Gabrr2gamma-aminobutyric acid type A receptor subunit rho 254744528047489929Rat
41016461LOC120102852uncharacterized LOC12010285254746852847472049Rat
7651324LOC102555980uncharacterized LOC10255598054749277147502403Rat
61900Gabrr1gamma-aminobutyric acid type A receptor subunit rho 154752415147561228Rat
41069886LOC120103194U6 spliceosomal RNA54755397647554081Rat
1307853Pm20d2peptidase M20 domain containing 254756605947586334Rat
1561162Srsf12serine and arginine rich splicing factor 1254760652647631509Rat
628753Pnrc1proline-rich nuclear receptor coactivator 154764707047657832Rat
11360528LOC108350948uncharacterized LOC10835094854769506447706817Rat
1311410RngttRNA guanylyltransferase and 5'-phosphatase54770692947913297Rat
9435428LOC103692329eukaryotic initiation factor 4A-I pseudogene54775341147754665Rat
11398296LOC108350949uncharacterized LOC10835094954783364147845926Rat
11439912LOC108350950uncharacterized LOC10835095054827279048371017Rat
1586082Bnip2-ps1BCL2 interacting protein 2, pseudogene 154827942748281466Rat
41248460LOC120102853uncharacterized LOC12010285354837353548403687Rat
2369Cnr1cannabinoid receptor 154840854348436099Rat
41192036LOC120103344U2 spliceosomal RNA54842749848427636Rat
9082336LOC103692331uncharacterized LOC10369233154845049948520234Rat
1560284Spaca1sperm acrosome associated 154852540648540676Rat
41313046LOC120103226U6 spliceosomal RNA54858804548588141Rat
1594697Set-ps17Set nuclear proto-oncogene, pseudogene 1754889456548895728Rat
6499463Rps27a-ps32ribosomal protein S27a, pseudogene 3254891664348917100Rat
1594682Csgalnact2-ps1chondroitin sulfate N-acetylgalactosaminyltransferase 2, pseudogene 154892507248927897Rat
11436894LOC108350951uncharacterized LOC10835095154906192649094913Rat
11505979LOC108350952uncharacterized LOC10835095254906238049063472Rat
40976841Trnav-aac27transfer RNA valine (anticodon AAC) 2754908089349080965Rat
40933816Trnav-aactransfer RNA valine (anticodon AAC)54908089349080965Rat
1307791Akirin2akirin 254910823149122566Rat
1308457Orc3origin recognition complex, subunit 354912375849181552Rat
1305419Rars2arginyl-tRNA synthetase 2, mitochondrial54918151749238664Rat
1311359Slc35a1solute carrier family 35 member A154922559949248382Rat
1310641Cfap206cilia and flagella associated protein 20654925439949299145Rat
1563056C5h6orf163similar to human chromosome 6 open reading frame 16354931678449329164Rat
1305158Smim8small integral membrane protein 854933661749345625Rat
41271580LOC120103296small nucleolar RNA SNORA1754935856049358689Rat
41078263LOC120103367small nucleolar RNA U354937190549372024Rat
61931Zfp292zinc finger protein 29254938417749468177Rat
11452394LOC108350953small ubiquitin-related modifier 2 pseudogene54948279049483777Rat
620436Cgaglycoprotein hormones, alpha polypeptide54948691549499192Rat
1586081Rpl23a-ps17ribosomal protein L23a, pseudogene 1754950771649508319Rat
41270715Ubr7-ps1ubiquitin protein ligase E3 component n-recognin 7, pseudogene 154951026449512757Rat
1560696Mob3bMOB kinase activator 3B54954625449737934Rat
7657583LOC102549876uncharacterized LOC10254987654958355049587920Rat
1584099Luc7l3-ps2LUC7-like 3 pre-mRNA splicing factor, pseudogene 254965348749655419Rat
1309045Ifnkinterferon kappa54973207349734281Rat
7641478Rpl10a-ps2ribosomal protein L10A, pseudogene 254973891149739989Rat
41194781LOC120103371U4 spliceosomal RNA54974815649748295Rat
1359108RGD1359108similar to RIKEN cDNA 3110043O2154976634049791434Rat
1310773Lingo2leucine rich repeat and Ig domain containing 255037074451687252Rat
41316018LOC120103215U6 spliceosomal RNA55046074850460853Rat
2325412Mir876microRNA 87655133719151337269Rat
2325356Mir873microRNA 87355135691951356995Rat
1592194Hnrnpk-ps6heterogeneous nuclear ribonucleoprotein K, pseudogene 655181298851817585Rat
2322670Rbsn5l-ps1rabenosyn-5 like, pseudogene 155279522552797778Rat
41389895Tuba1a-ps5tubulin, alpha 1A, pseudogene 555290789152911653Rat
1586080Ldha-ps4lactate dehydrogenase A, pseudogene 455313501053136103Rat
1591027Hspa8-ps13heat shock protein family A (Hsp70) member 8, pseudogene 1355316325753165307Rat
11457499Hnrnpa1-ps31heterogeneous nuclear ribonucleoprotein A1, pseudogene 3155365434253655308Rat
13061951700009N14RiklRIKEN cDNA 1700009N14 gene like55445600554457381Rat
41257904Rnu6-48RNA, U6 small nuclear 4855460119254601298Rat
41330287Rnu7-97RNA, U7 small nuclear 9755508991255089976Rat
2019Aco1aconitase 155525984155315872Rat
1309460Rig1RNA sensor RIG-155532135155369947Rat
41373051LOC120102855uncharacterized LOC12010285555536968155370818Rat
1305270ToporsTOP1 binding arginine/serine rich protein, E3 ubiquitin ligase55538803355399937Rat
7573721Smim27small integral membrane protein 2755539963755400304Rat
1311354Ndufb6NADH:ubiquinone oxidoreductase subunit B655540054355410110Rat
1590957Ptma-ps2prothymosin alpha, pseudogene 255545244255453652Rat
41185977LOC120102856uncharacterized LOC12010285655551486355520852Rat
41246143LOC120103221U6 spliceosomal RNA55554495855545064Rat
2301013Sec61g-ps8Sec61 translocon subunit gamma, pseudogene 855558521355585625Rat
1589861Tmem215transmembrane protein 21555561256855615828Rat
41194899LOC120103068SUMO-conjugating enzyme UBC9-like55567970855692106Rat
1589840Rpl24-ps4ribosomal protein L24, pseudogene 455578299955783468Rat
628740Aptxaprataxin55579889655822963Rat
620942Dnaja1DnaJ heat shock protein family (Hsp40) member A155584241455853326Rat
2325370Mir207microRNA 20755584280655842883Rat
620694Smu1SMU1, DNA replication regulator and spliceosomal factor55585669155875262Rat
620900B4galt1beta-1,4-galactosyltransferase 155593561455982461Rat
1303188Spink4serine peptidase inhibitor, Kazal type 455604393656064841Rat
1305203Bag1BAG cochaperone 155606849456081075Rat
1305968Chmp5charged multivesicular body protein 555608138556098529Rat
1310277Nfx1nuclear transcription factor, X-box binding 155610494556162912Rat
2145Aqp7aquaporin 755617164956186642Rat
40940830LOC120103220U6 spliceosomal RNA55618933456189452Rat
68428Aqp3aquaporin 3 (Gill blood group)55623920056244718Rat
1308033Nol6nucleolar protein 655625991956270540Rat
1594826Ube2r2ubiquitin-conjugating enzyme E2R 255628660456345160Rat
41327246LOC120103060uncharacterized LOC12010306055628697356300346Rat
1311717Ubap2ubiquitin-associated protein 255634824356437403Rat
41162930Snord121bsmall nucleolar RNA, C/D box 121B55635624356356319Rat
41193020Snord121asmall nucleolar RNA, C/D box 121A55636700956367089Rat
41227498LOC120103358small nucleolar RNA SNORD121A55636927856369356Rat
1596535Rps13l1ribosomal protein S13 like 155645712156457669Rat
1594034Dcaf12DDB1 and CUL4 associated factor 1255646041856482171Rat
40965561LOC120103061uncharacterized LOC12010306155648534456491627Rat
1305186Ubap1ubiquitin-associated protein 155652072256561153Rat
1307723Kif24kinesin family member 2455656101956628040Rat
1303023Nudt2nudix hydrolase 255662826556643104Rat
1309821Myorgmyogenesis regulating glycosidase55665425756664467Rat
1561916Spmip6sperm microtubule inner protein 655666616056678865Rat
7551556LOC102553821uncharacterized LOC10255382155667907056684701Rat
1588668Fam219afamily with sequence similarity 219, member A55667927256729959Rat
1565671Dnai1dynein, axonemal, intermediate chain 155673017956800926Rat
6487582Enhoenergy homeostasis associated55680098056802777Rat
1303100Cntfrciliary neurotrophic factor receptor55682344856861049Rat
1306576Rpp25lribonuclease P/MRP subunit p25 like55687842056879956Rat
1309547Dctn3dynactin subunit 355688108556889041Rat
1560943Arid3cAT-rich interaction domain 3C55688964956896959Rat
68364Sigmar1sigma non-opioid intracellular receptor 155690415556907012Rat
1306483Galtgalactose-1-phosphate uridylyltransferase55692703956930284Rat
621332Il11ra1interleukin 11 receptor subunit alpha 155693182456941408Rat
1304660Ccl27C-C motif chemokine ligand 2755694140256948511Rat
7670634LOC102547621uncharacterized LOC10254762155695297756960366Rat
1310336Ccl19C-C motif chemokine ligand 1955696336456965308Rat
1592281Rps12l7ribosomal protein S12-like 755696719256987008Rat
1311996Ccl21C-C motif chemokine ligand 2155698055756981661Rat
2320471Spata31f1SPATA31 subfamily F member 155706574357071880Rat
1561387Spata31f3SPATA31 subfamily F member 355708730557093191Rat
1559864Phf24PHD finger protein 2455714342857171054Rat
1307453Dnajb5DnaJ heat shock protein family (Hsp40) member B555717684057186067Rat
2321337Spata31g1SPATA31 subfamily G member 155719998057204069Rat
621595Vcpvalosin-containing protein55721016757229571Rat
1587477FancgFA complementation group G55723028757240067Rat
1309498Pigophosphatidylinositol glycan anchor biosynthesis, class O55724472157256252Rat
1308285Stoml2stomatin like 255725622757259824Rat
1311249Atosbatos homolog B55726083957274524Rat
619723Unc13bunc-13 homolog B55728899957504110Rat
41092501Rpl39-ps2ribosomal protein L39, pseudogene 255731859057318749Rat
9297465Tmsb4xl2thymosin beta 4, X-linked like 255731945957319811Rat
41007842LOC120103346small nucleolar RNA SNORA1755737819257378303Rat
1587460Atp8b5ATPase, class I, type 8B, member 555750589757620065Rat
41164079LOC120102860uncharacterized LOC12010286055753872457568537Rat
1592688Rusc2RUN and SH3 domain containing 255762839757675524Rat
2318060Cimip2bciliary microtubule inner protein 2B55767553757680133Rat
62059Tesk1testis associated actin remodelling kinase 155769192257697698Rat
1309757Cd72Cd72 molecule55769736157704980Rat
1559919Sit1signaling threshold regulating transmembrane adaptor 155774021257741838Rat
1560252Ccdc107coiled-coil domain containing 10755774950257752920Rat
1310376Arhgef39Rho guanine nucleotide exchange factor 3955775250957756079Rat
1306426Car9carbonic anhydrase 955776323457769838Rat
1559479Tpm2tropomyosin 255777091957780278Rat
1306247Tln1talin 155778767057817900Rat
1308831Creb3cAMP responsive element binding protein 355781786557823233Rat
1305598Gba2glucosylceramidase beta 255782238957834522Rat
1311757Rgp1RGP1 homolog, RAB6A GEF complex partner 155783446757843087Rat
2323536Msmpmicroseminoprotein, prostate associated55783893557839985Rat
1562259Rps20l1ribosomal protein S20 like 155786762857868149Rat
620851Npr2natriuretic peptide receptor 255788317157901590Rat
1307079Spag8sperm associated antigen 855790168157903894Rat
1308910Hint2histidine triad nucleotide binding protein 255790461357906868Rat
1310425Fam221bfamily with sequence similarity 221, member B55791034657919562Rat
1310012Tmem8btransmembrane protein 8B55791947357948419Rat
1332684Or13e8olfactory receptor family 13 subfamily E member 855795197157952921Rat
1333724Or13j1olfactory receptor family 13 subfamily J member 155796139157962329Rat
2323278Hrct1histidine rich carboxyl terminus 155798234457983186Rat
41352849LOC120103380U6 spliceosomal RNA55798503557985141Rat
41374908Spaarsmall regulatory polypeptide of amino acid response55798542357987482Rat
1333470Or13d31-ps1olfactory receptor family 13 subfamily D member 31, pseudogene 155801380858014421Rat
1332606Or13c7dolfactory receptor family 13 subfamily C member 7D55801960658020565Rat
1334264Or13c7eolfactory receptor family 13 subfamily C member 7E55803253558033482Rat
1334076Or13c7bolfactory receptor family 13 subfamily C member 7B55804633058047286Rat
1332747Or13c7colfactory receptor family 13 subfamily C member 7C55806707858068034Rat
1333374Or13c7olfactory receptor family 13 subfamily C member 755808115058082109Rat
1308845Reckreversion-inducing-cysteine-rich protein with kazal motifs55810296158169516Rat
1583669Glipr2GLI pathogenesis-related 255817041758202258Rat
1359369Ccincalicin55820667658208563Rat
70919Cltaclathrin, light chain A55824425358263480Rat
69239Gneglucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase55826718958307396Rat
621856Rnf38ring finger protein 3855835877158467424Rat
1308974Melkmaternal embryonic leucine zipper kinase55854039358600562Rat
41340812LOC120103315small nucleolar RNA SNORA1755864448858644614Rat
2323128LOC100359916heterogeneous nuclear ribonucleoprotein K-like55866832658670222Rat
1565236Pax5paired box 555876333458945719Rat
41144673LOC120102862uncharacterized LOC12010286255889677158899409Rat
1310467Zcchc7zinc finger CCHC-type containing 755899255859173308Rat
41206741LOC120102863uncharacterized LOC12010286355921362759226603Rat
1308851Grhprglyoxylate and hydroxypyruvate reductase55923417959243614Rat
1307367Zbtb5zinc finger and BTB domain containing 555924413259265461Rat
1565773Polr1eRNA polymerase I subunit E55927945659295346Rat
1305465Fbxo10F-box protein 1055929701659343429Rat
1596808Tomm5translocase of outer mitochondrial membrane 555936236059365191Rat
9330186LOC10369234660S ribosomal protein L24 pseudogene55937347759374019Rat
41380328LOC120103148uncharacterized LOC12010314855939229559395154Rat
1305229Frmpd1FERM and PDZ domain containing 155944307659545125Rat
41200968LOC120102864uncharacterized LOC12010286455947188159475003Rat
1310735Trmt10btRNA methyltransferase 10B55954884559572529Rat
1304739Exosc3exosome component 355957384959579065Rat
9455316Pgam1-ps8phosphoglycerate mutase 1, pseudogene 855959321759593995Rat
1586079Dcaf10lDDB1 and CUL4 associated factor 10 like55960217759607812Rat
1304730Dcaf10DDB1 and CUL4 associated factor 1055960779559647209Rat
1305190Slc25a51solute carrier family 25, member 5155964998059663454Rat
1565350ShbSH2 domain containing adaptor protein B55967806659785443Rat
9246609LOC103692348uncharacterized LOC10369234855991124059915448Rat
1306737Aldh1b1aldehyde dehydrogenase 1 family, member B156006337060068378Rat
1305656Igfbpl1insulin-like growth factor binding protein-like 156007642860091833Rat
1305807Stra6lSTRA6-like56010694960147546Rat
6498132Ccdc180coiled-coil domain containing 18056015488360223508Rat
41363728LOC120102865uncharacterized LOC12010286556021582360222294Rat
619724Tdrd7tudor domain containing 756023874260312548Rat
41356641LOC120102866uncharacterized LOC12010286656025729860267598Rat
3874Tmod1tropomodulin 156031644560393957Rat
1310893Tstd2thiosulfate sulfurtransferase like domain containing 256037175160415916Rat
1308973Ncbp1nuclear cap binding protein subunit 156041602360449004Rat
1308769XpaXPA, DNA damage recognition and repair factor56043167360475726Rat
1584846Sord-ps4sorbitol dehydrogenase, pseudogene 456054795960551393Rat
621723Foxe1forkhead box E156063002760632835Rat
1305420TrmotRNA methyltransferase O56066310660676423Rat
621569Hemgnhemogen56067963360698597Rat
41030381LOC120102868uncharacterized LOC12010286856069396560699404Rat
6497914Pfdn6-ps1prefoldin subunit 6, pseudogene 156071755360717974Rat
621285Anp32bacidic nuclear phosphoprotein 32 family member B56074307760765726Rat
1311943NansN-acetylneuraminate synthase56078044160797583Rat
1311514Trim14tripartite motif-containing 1456080056860824858Rat
1309719Coro2acoronin 2A56082563060881917Rat
11466141LOC108350963uncharacterized LOC10835096356086071560864473Rat
11357613LOC108350962uncharacterized LOC10835096256088192860890626Rat
1306860Tbc1d2TBC1 domain family, member 256088411460931717Rat
41122038LOC120102869uncharacterized LOC12010286956090395160904907Rat
619864Gabbr2gamma-aminobutyric acid type B receptor subunit 256094751761288104Rat
3334Anks6ankyrin repeat and sterile alpha motif domain containing 656130918361350596Rat
2320512Dppa3-ps4developmental pluripotency-associated 3, pseudogene 456136001661360478Rat
1562001Galnt12polypeptide N-acetylgalactosaminyltransferase 1256138457561413346Rat
7721743LOC102551073uncharacterized LOC10255107356148938761502617Rat
1310820Col15a1collagen type XV alpha 1 chain56150196361607591Rat
41122460LOC120102870uncharacterized LOC12010287056155012661567214Rat
3852Tgfbr1transforming growth factor, beta receptor 156165377361710777Rat
41084988LOC120102871uncharacterized LOC12010287156172824561741721Rat
1309940Alg2ALG2, alpha-1,3/1,6-mannosyltransferase56176873861773297Rat
1304997Sec61bSEC61 translocon subunit beta56177359461781804Rat
40932422LOC120102872uncharacterized LOC12010287256195026661963787Rat
41344927Psmb3-ps3proteasome 20S subunit beta 3, pseudogene 356213299462133594Rat
41286228LOC120102873uncharacterized LOC12010287356219883162234609Rat
40992078LOC120102874uncharacterized LOC12010287456223105162234747Rat
41124713LOC120103308small nucleolar RNA SNORA1756223163762231768Rat
61882Nr4a3nuclear receptor subfamily 4, group A, member 356236158862401489Rat
708499Stx17syntaxin 1756244613862506108Rat
7516529Exosc8-ps1exosome component 8, pseudogene 156249637662498494Rat
1309176Erp44endoplasmic reticulum protein 4456251655062610762Rat
1563359Invsinversin56261091662763813Rat
7706450LOC102551711uncharacterized LOC10255171156269760362753262Rat
1312045Tex10testis expressed 1056276223062808373Rat
1308165Msantd3Myb/SANT DNA binding domain containing 356286602262892444Rat
11499882LOC108350968uncharacterized LOC10835096856288035062910661Rat
62005Tmeff1transmembrane protein with EGF-like and two follistatin-like domains 156291074062996494Rat
1310395Cavin4caveolae associated protein 456299690663007677Rat
41217704LOC120103339small nucleolar RNA SNORA1756324864463248766Rat
1303116Plppr1phospholipid phosphatase related 156343745763725286Rat
41002171Trnaa-agc32transfer RNA alanine (anticodon AGC) 3256368361763683691Rat
41367081LOC120103256small nucleolar RNA SNORD113/SNORD114 family56369844663698522Rat
1585791Cnppd1-ps1cyclin Pas1/PHO80 domain containing 1, pseudogene 156372743963729005Rat
1359532Acnat2acyl-coenzyme A amino acid N-acyltransferase 256375326963757521Rat
1584718Acnat2-ps1acyl-coenzyme A amino acid N-acyltransferase 2, pseudogene56376466663786264Rat
1584701Acnat1acyl-coenzyme A amino acid N-acyltransferase 156379665163801601Rat
2190Baatbile acid CoA:amino acid N-acyltransferase56385166863860641Rat
1308008Mrpl50mitochondrial ribosomal protein L5056386743763872591Rat
1306510Zfp189zinc finger protein 18956387259663884348Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33836D5Mit912756029343460293557Ratregion
34047D5Mit113655596227855962414Ratregion
34212D5Mgh518154372665643726832Ratregion
34322D5Mgh1014155979339959793528Ratregion
34469D5Mgh311952458344324583550Ratregion
34469D5Mgh311952458344324583550Ratregion
34469D5Mgh311952459887824598989Ratregion
34469D5Mgh311952459887824598989Ratregion
34481D5Mgh2812352483880224838943Ratregion
34501D5Mgh2614855580560655805750Ratregion
34639D5Pas131052614166926141981Ratregion
33678D5Mit1010055571562255715708Ratregion
36113D5Rat116353473011634730278Ratregion
36177D5Rat913555882923658829371Ratregion
36255D5Rat18913252381251823812651Ratregion
36279D5Rat415254786906247869213Ratregion
36946D5Rat717655571562655715787Ratregion
37992D5Rat10223855686914956869389Ratregion
36618D5Rat216853793984237939998Ratregion
36743D5Rat1115356281175862811911Ratregion
34837D5Rat5217454784548347845673Ratregion
35042D5Rat817655866567858665852Ratregion
35076D5Rat614855045536850455513Ratregion
35767D5Rat515854983094949831125Ratregion
35783D5Rat1014356151004461510180Ratregion
39722D5Rat13423055032855150328767Ratregion
39780D5Rat12719852660778426607972Ratregion
40414D5Rat20712552093858720938712Ratregion
40430D5Rat19417556222253762222721Ratregion
40716D5Rat12411651887394718874051Ratregion
38548D5Rat8224054404503444045280Ratregion
38746D5Rat11719655327483853275044Ratregion
39992D5Rat21024952351305623513295Ratregion
40272D5Rat13815956213209362132240Ratregion
40280D5Rat13616055873725558737417Ratregion
40330D5Rat13014553166378931663928Ratregion
39160D5Rat7323752483871024838943Ratregion
39186D5Rat7024953518915335189418Ratregion
39338D5Rat20922952250972222510074Ratregion
39338D5Rat20922952250984722510074Ratregion
42190D5Arb1823452972406229724324Ratregion
42313D5Rat24920152123768721237888Ratregion
42314D5Rat25023853370151833701740Ratregion
42315D5Rat25120453675380236754006Ratregion
42316D5Rat25320154492654444926750Ratregion
42317D5Rat25220154406941944069621Ratregion
42318D5Rat25414354959378349593924Ratregion
42734D5Rat21810052316678023166901Ratregion
42737D5Rat19122553556320335563429Ratregion
42738D5Rat22020253348711933487295Ratregion
42744D5Rat22523756291968262919913Ratregion
42745D5Rat22723256151334261513580Ratregion
41350D5Rat13215254012830740128459Ratregion
41480D5Rat12827852450880624509116Ratregion
41480D5Rat12827852450887524509116Ratregion
40790D5Rat13720956303981863040023Ratregion
40800D5Rat12620952404790024048109Ratregion
41072D5Rat13320354779785647798053Ratregion
41104D5Rat13521655668076356680977Ratregion
41800D5Rat19514756260545262605589Ratregion
43232D1Got6813855274058152742270Ratregion
43874D5Got11212652333204623332172Ratregion
43875D5Got10913052307306223073192Ratregion
43876D5Got13518652138987621390062Ratregion
43891D6Got3620253566775035667952Ratregion
60650D9Got1179655889962358899719Ratregion
60656D9Got13815655870540158705557Ratregion
60623D8Got2521552849399828494213Ratregion
60493D5Got7218753869621938696406Ratregion
60523D6Got19612655343686153436987Ratregion
69546D5Uwm1215752726873627268904Ratregion
69548D5Uwm1320253725264437252890Ratregion
69551D5Uwm1429654700298247003274Ratregion
69553D5Uwm5119753335046833350661Ratregion
625790D5Got11119152323022623230415Ratregion
66413D5Mco422756151934461519706Ratregion
66416D5Mco529052354577523546079Ratregion
66441D5Uia1125655056113550561391Ratregion
66634D5Mco1326855634017456340449Ratregion
66634D5Mco1326855634017456340467Ratregion
66639D5Mco1526755939345159393701Ratregion
66655D5Mco2116155101540851015571Ratregion
66658D5Mco2327151952503919525314Ratregion
66662D5Mco2532653387800433878321Ratregion
66690D5Mco3022756033397760334226Ratregion
66707D5Mco3742352165449021654918Ratregion
67219D5Arb2217852801325928013437Ratregion
67360D5Arb1653548860835488977Ratregion
1630361D5Got21111952686519226865311Ratregion
1630371D5Got27411153343667833436775Ratregion
1630534D5Got26026054938262149382870Ratregion
1630836D5Wox3015156240108262401231Ratregion
1630875D5Wox3620953154736731547578Ratregion
1631003D5Got27129155496681654967107Ratregion
1631146D5Got2799453675392036754014Ratregion
1631457D5Got28810453167064431670743Ratregion
1631662D5Got28117353298018732980360Ratregion
1632022D5Got28223355674562456745858Ratregion
1632343D5Got21716253875440738754569Ratregion
1578970D10Chm5117053358383633584012Ratregion
1579025D10Chm5025053366817233668415Ratregion
1581972D5Uwm6355556454955564767Ratregion
1581988D5Uwm6224555897344958973694Ratregion
1581996D5Uwm6527756319089063191167Ratregion
1582038D5Uwm6427456005104760051321Ratregion
1627772D5Got22413355211921552119348Ratregion
1627772D5Got22413355211921552119669Ratregion
1627772D5Got22413355211927452119348Ratregion
1627994D5Got22820155819475358194956Ratregion
1628972D5Got28912953841574038415871Ratregion
1629157D5Got21314552748649727486644Ratregion
1629193D5Got23024656168377661684022Ratregion
1629836D5Got26511253648516436485271Ratregion
1638637D5Wox3217555623968756239862Ratregion
1638832D5Got31613453491089434911028Ratregion
1638832D5Got31613453491092534911028Ratregion
1641243D5Got32321655650899856509214Ratregion
1641425D5Cebr329855678119356781493Ratregion
1641522D5Got22924855725016657250414Ratregion
1641564D5Ulb215655101538651015542Ratregion
1641605D5Got22519155813338758133573Ratregion
1641663D5Wox4411756094761960947736Ratregion
1633468D5Got27611854807905548079173Ratregion
1633482D5Got21515853683371036833869Ratregion
1633616D5Got27518353556330135563484Ratregion
1639986D5Wox3416751938954419389711Ratregion
1640110D5Got30814754879375848793905Ratregion
1640185D5Got31523255944884359449075Ratregion
1640375D5Got21614153409119634091337Ratregion
1640751D5Mco31923552354595223546187Ratregion
1635221D9Got20515954616165546161811Ratregion
1635256D5Got21430053473312534733425Ratregion
1635400D5Got25927555672190156722176Ratregion
1635762D5Got22320755104091051041117Ratregion
1635911D5Got22714955629167656291825Ratregion
1636323D5Got22222854757971947579947Ratregion
1636412D5Got29827553559128735591566Ratregion
1636547D5Got21918253830759438307778Ratregion
1636665D5Got29217155522745855227629Ratregion
1636727D5Got28426554229729842297686Ratregion
1636727D5Got28426554229742142297686Ratregion
1638167D5Got28514652787870427878850Ratregion
1638216D5Got22015354156573941565892Ratregion
1633730D5Got22624155723862757238859Ratregion
1633993D5Got25512654859909648599222Ratregion
1634015D5Got30129954884756448847863Ratregion
1634081D5Got29727454983084749831121Ratregion
1634085D5Got29324156077307260773313Ratregion
1634340D5Wox3125651938813419388390Ratregion
1634531D3Got2729252491974524919836Ratregion
1634714D5Got28314353196981631969954Ratregion
7193057Aqp3055624008556240955Ratregion
7193019Runx1t142252733408227334504Ratregion
7206292Pou3f273053608272336083453Ratregion
7206490UniSTS:54664683756006744960068286Ratregion
5035767PMC165443P112151938356819383689Ratregion
5035775PMC166293P146654842977048430236Ratregion
5035809PMC196070P122453608358836083812Ratregion
5038620AW55725015154718574447185895Ratregion
5035907PMC30485P143255749842957498861Ratregion
5035961PMC317216P177053608217036082940Ratregion
5038800RH12734018055690434056904520Ratregion
5036173RH12567627453510827135108545Ratregion
5038846RH12736621855694684356947061Ratregion
7206540UniSTS:546979105952733419327335253Ratregion
7206622Pou3f253153608319836083729Ratregion
5036460Pou3f218853608327636083464Ratregion
5036561AU0484359955523561655235715Ratregion
5036679AU04884729355124402851244321Ratregion
5036721AU04899229156291316162913452Ratregion
5036829AU04933724552993213229932377Ratregion
5036849AU04940619854806043148060628Ratregion
5037109SHGC-5312018552463091124631096Ratregion
5037141A002D3110355656099056561093Ratregion
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5501722UniSTS:26699014254312507543125217Ratregion
5501848MARC_15705-15706:1013524302:116452491660224916766Ratregion
5501906MARC_17336-17337:1021394418:110955749883257499457Ratregion
5502241AF0049278955690449356904582Ratregion
Position Markers

Flank 1: (D5Rat124)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2518,873,947 - 18,874,051 (+)MAPPER
Rnor_6.0518,847,913 - 18,848,016NCBI
Rnor_5.0523,635,353 - 23,635,456UniSTS
RGSC_v3.4519,206,258 - 19,206,361UniSTS
RGSC_v3.4519,206,257 - 19,206,361RGD
RGSC_v3.1519,206,258 - 19,206,361RGD
Celera518,184,937 - 18,185,040UniSTS
RH 3.4 Map5102.4RGD
RH 3.4 Map5102.4UniSTS
RH 2.0 Map599.0RGD
SHRSP x BN Map510.3299RGD
Flank 2: (D5Rat114)
Rat AssemblyChrPosition (strand)Source
RH 3.4 Map5965.4RGD
RH 3.4 Map5965.4UniSTS
SHRSP x BN Map580.7699UniSTS
SHRSP x BN Map580.7699RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
1598868Mcs12Mammary carcinoma susceptibility QTL 120.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)55897344960051321Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1598814Mcs13Mammary carcinoma susceptibility QTL 130.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)56319089069927503Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general Gender: females 1599390
qtl_general measurement method: 53-58 days old rats were treated with DMBA, diameter of the tumor was measured once a week, after 19 weeks all animals were necropsied and the number of tumors counted 1599390
qtl_general interacting phenotypes: controls the duration of tumor latency, 65% reduction in tumors 1599390
qtl_general inducing agent and dosage: single dosage of DMBA, 65mg/kg 1599390
qtl_general region initially responsible for susceptibility but has resistance phenotypes 1599390