Memor6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Memor6 (Memory QTL 6) Rattus norvegicus

Symbol: Memor6
Name: Memory QTL 6
RGD ID: 1598869
Previously known as: Nav-6
Trait: exploratory behavior trait   (VT:0010471)    
Measurement Type: total horizontal distance resulting from voluntary locomotion in an experimental apparatus   (CMO:0001443)    
LOD Score: 3.1
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82026,689,362 - 56,021,148RGD_MAPPER_PIPELINE
mRatBN7.22029,244,388 - 54,435,887RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02030,913,481 - 56,205,956RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.02032,704,500 - 57,791,882RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.42028,656,553 - 55,268,282RGDRGSC_v3.4
RGSC_v3.12028,670,353 - 55,296,979RGD
Cross Type: intercross
Strains Crossed: SR/JrHsd SS/JrHsd 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
SR/JrHsd  (IEA)
SS/JrHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genome-wide scan for quantitative trait loci influencing spatial navigation and social recognition memory in Dahl rats. Ruiz-Opazo N and Tonkiss J, Physiol Genomics. 2006 Jul 12;26(2):145-51.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1305079Dsedermatan sulfate epimerase202666132626740011Rat
1595702Eef1a1-ps5eukaryotic translation elongation factor 1 alpha 1, pseudogene 5202676470826766273Rat
402049478LOC134483908uncharacterized LOC134483908202678777026790636Rat
1305732Gcc2GRIP and coiled-coil domain containing 2202678847226836728Rat
41069236LOC120099052U6 spliceosomal RNA202684480026844900Rat
1560732Lims1LIM zinc finger domain containing 1202685136426961607Rat
41050300LOC120099059small nucleolar RNA SNORD113/SNORD114 family202688992826889996Rat
402355882LOC134483907uncharacterized LOC134483907202695467326957932Rat
1560047Ranbp2RAN binding protein 2202698452027036573Rat
1566050Ccdc138coiled-coil domain containing 138202703725627115454Rat
1561714Edarectodysplasin-A receptor202713093427209672Rat
9440676LOC103694417uncharacterized LOC103694417202722821827230882Rat
1589772Sh3rf3SH3 domain containing ring finger 3202730693727642315Rat
1359307Septin10septin 10202764486227737817Rat
1595666Sowahcsosondowah ankyrin repeat domain family member C202773824727742713Rat
621000P4ha1prolyl 4-hydroxylase subunit alpha 1202778469627895785Rat
1305065Snrpd2lsmall nuclear ribonucleoprotein D2-like202779635727796881Rat
1588484Pla2g12bphospholipase A2, group XIIB202791062027931734Rat
735082Oit3oncoprotein induced transcript 3202793310627953683Rat
1589771Mcumitochondrial calcium uniporter202796052028123103Rat
402392718LOC134483912uncharacterized LOC134483912202797772227984452Rat
41370727LOC120099016small nucleolar RNA SNORA17202819267428192801Rat
1595645Fabp5-ps3fatty acid binding protein 5, pseudogene 3202820682128207382Rat
735033Micu1mitochondrial calcium uptake 1202821177428357928Rat
41299430LOC120099025small nucleolar RNA SNORA17202831748528317571Rat
1359677Dnajb12DnaJ heat shock protein family (Hsp40) member B12202837118028389390Rat
41402703LOC120098848uncharacterized LOC120098848202839748328405599Rat
621731Ddit4DNA-damage-inducible transcript 4202843493828437037Rat
2321124Anapc16anaphase promoting complex subunit 16202847028228484601Rat
1359255Ascc1activating signal cointegrator 1 complex subunit 1202848404428574195Rat
1308568Spock2SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2202858026228607198Rat
41299247Rps29-ps7ribosomal protein S29, pseudogene 7202862074328621121Rat
620355Chst3carbohydrate sulfotransferase 3202865730828694976Rat
2324829Rpl37a-ps15ribosomal protein L37A, pseudogene 15202871204228713139Rat
3423Psapprosaposin202875695128783422Rat
619760Cdh23cadherin-related 23202878312429165624Rat
1590938VsirV-set immunoregulatory receptor202882449328850175Rat
401994524LOC134483915uncharacterized LOC134483915202886685828871148Rat
2320942C20h10orf105similar to human chromosome 10 open reading frame 105202887651928880120Rat
727811Slc29a3solute carrier family 29 member 3202919108629228299Rat
621756Unc5bunc-5 netrin receptor B202924063929307270Rat
1595812Rps7-ps18ribosomal protein S7, pseudogene 18202936670929372636Rat
7722068LOC102555625uncharacterized LOC102555625202942628329454667Rat
3263Pcbd1pterin-4 alpha-carbinolamine dehydratase 1202957336229587181Rat
628599Sgpl1sphingosine-1-phosphate lyase 1202959065229637064Rat
41207248Trnas-aga16transfer RNA serine (anticodon AGA) 16202964658529646668Rat
1561665Tbatathymus, brain and testes associated202966090429677971Rat
1308899Adamts14ADAM metallopeptidase with thrombospondin type 1 motif, 14202968587629762685Rat
708463Prf1perforin 1202978904029794550Rat
1305933Pald1phosphatase domain containing, paladin 1202981265029877733Rat
1305994Nodalnodal growth differentiation factor202991125829919659Rat
1310824Eif4ebp2eukaryotic translation initiation factor 4E binding protein 2202992226029942922Rat
1595811Csrp2-ps1cysteine and glycine-rich protein 2, pseudogene 1202995364029954866Rat
1566140Lrrc20leucine rich repeat containing 20202996567330071185Rat
621570Npffr1neuropeptide FF receptor 1203008260430116752Rat
402141910LOC134483917uncharacterized LOC134483917203008583230102288Rat
1589773Ppa1inorganic pyrophosphatase 1203013208830160492Rat
1359540Sar1asecretion associated, Ras related GTPase 1A203016631030178718Rat
1307354Tysnd1trypsin like peroxisomal matrix peptidase 1203018087830188239Rat
1304964Aifm2AIF family member 2203019578130222014Rat
1561371Macroh2a2macroH2A.2 histone203022097530270652Rat
11425978LOC108353239proline-rich protein HaeIII subfamily 1-like203025756330275667Rat
1595704Col13a1collagen type XIII alpha 1 chain203032674430466800Rat
402341493LOC134483806uncharacterized LOC134483806203058928930591778Rat
1305587Fam241bfamily with sequence similarity 241 member B203059508230598007Rat
631350Neurog3neurogenin 3203062253330624015Rat
1588304Tspan15tetraspanin 15203067327130717651Rat
1588274Ciao2a-ps1cytosolic iron-sulfur assembly component 2A, pseudogene 1203073103930731477Rat
3812Tacr2tachykinin receptor 2203075164530766181Rat
2796Hk1hexokinase 1203077322230874814Rat
41400166LOC120098927synaptic defective enhancer 1-like203084257630851382Rat
2321830Hkdc1hexokinase domain containing 1203087803730917044Rat
1305565Supv3l1Suv3 like RNA helicase203092124830941779Rat
1359254Vps26aVPS26 retromer complex component A203094701830976964Rat
619969Srgnserglycin203098550831022296Rat
1593126Kifbpkinesin family binding protein203105562531075232Rat
1307306Ddx21DExD-box helicase 21203107704431097238Rat
1310934Ddx50DExD-box helicase 50203110435431133652Rat
1310622Stox1storkhead box 1203114099331209126Rat
41327353LOC120099042U6 spliceosomal RNA203121000631210112Rat
1560358Ccar1cell division cycle and apoptosis regulator 1203122862431271233Rat
41352887Snord98small nucleolar RNA, C/D box 98203124729031247354Rat
41268996Vps36-ps1vacuolar protein sorting 36, pseudogene 1203128417431306389Rat
1307229Rsph4aradial spoke head component 4A203130710231323263Rat
7560376Kars1-ps1lysyl-tRNA synthetase 1, pseudogene 1203131708831320169Rat
1307672Zup1zinc finger containing ubiquitin peptidase 1203132793931358088Rat
1561324Kpna5karyopherin subunit alpha 5203136564731430793Rat
11509718Zfp41-ps1zinc finger protein 41, pseudogene 1203144869631450086Rat
402072030LOC134483923glyceraldehyde-3-phosphate dehydrogenase-like203145766131928028Rat
735077Gprc6aG protein-coupled receptor, class C, group 6, member A203146481831486121Rat
1595810Eef1b2-ps2eukaryotic translation elongation factor 1 beta 2, pseudogene 2203154887431555778Rat
1307491Rfx6regulatory factor X, 6203156249031615967Rat
1597212Btf3-ps9basic transcription factor 3, pseudogene 9203170403231705102Rat
41007625LOC120099018small nucleolar RNA SNORA17203177085831770990Rat
1592098Hspd1-ps6heat shock protein family D (Hsp60) member 1, pseudogene 6203191000431912891Rat
1311903Vgll2vestigial-like family member 2203195221431958100Rat
3591Ros1ROS proto-oncogene 1 , receptor tyrosine kinase203197532832126675Rat
6495429LOC100911055transforming growth factor beta regulator 1-like203204839132049859Rat
1307211Dcbld1discoidin, CUB and LCCL domain containing 1203216124132254391Rat
1309512Gopcgolgi associated PDZ and coiled-coil motif containing203227031432319635Rat
1307755Nepnnephrocan203232931432342162Rat
1307879Nus1NUS1 dehydrodolichyl diphosphate synthase subunit203235451932381265Rat
1559576Slc35f1solute carrier family 35, member F1203257309132961466Rat
1595988Prdx1-ps7peroxiredoxin 1, pseudogene 7203276710132782650Rat
2319745Cep85lcentrosomal protein 85-like203311111433282182Rat
619894Plnphospholamban203316651233182241Rat
1595984Ndufb4-ps9NADH:ubiquinone oxidoreductase subunit B4, pseudogene 9203328656933287030Rat
1560557Mcm9minichromosome maintenance 9 homologous recombination repair factor203336932533472243Rat
1311941Asf1aanti-silencing function 1A histone chaperone203343663233451478Rat
41255492Mcm9lminichromosome maintenance 9 homologous recombination repair factor like203343684833437387Rat
1311294Fam184afamily with sequence similarity 184, member A203347708933599296Rat
41128795LOC120099028small nucleolar RNA SNORA26203353565933535779Rat
1310891Man1a1mannosidase, alpha, class 1A, member 1203374515833928584Rat
1559810Cd46l1CD46 molecule like 1203453899634539997Rat
1589355Tuba1b-ps10tubulin, alpha 1B, pseudogene 10203461388334614678Rat
1566244Tatdn1-ps1TatD DNase domain containing 1, pseudogene 1203499833634999192Rat
1595968Rab1a-ps5RAB1A, member RAS oncogene family, pseudogene 5203523134435232163Rat
2323599Tbc1d32TBC1 domain family, member 32203590228136133161Rat
41083251Ube2n-ps7ubiquitin-conjugating enzyme E2N, pseudogene 7203593238735932905Rat
1308699Msl3l2male-specific lethal 3-like 2203601138136019529Rat
2690Gja1gap junction protein, alpha 1203630249036315010Rat
1595943Ldha-ps19lactate dehydrogenase A, pseudogene 19203633223936333186Rat
11497081LOC108349074uncharacterized LOC108349074203638552236433477Rat
11369035Rpl15-ps15ribosomal protein L15, pseudogene 15203640753636408144Rat
1590918Gapdh-ps96Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 96203646786336469264Rat
7709358LOC102552402uncharacterized LOC102552402203652728036568526Rat
1561288Phb1-ps19prohibitin 1, pseudogene 19203675108636776252Rat
1305131Twf2-ps1twinfilin, actin-binding protein, homolog 2 (Drosophila), pseudogene 1203695842336959593Rat
68395Hsf2heat shock transcription factor 2203736630137393922Rat
727843Serinc1serine incorporator 1203739649737415433Rat
3335PkibcAMP-dependent protein kinase inhibitor beta203751156437608607Rat
69312Fabp7fatty acid binding protein 7203766712537673299Rat
1359277Smpdl3asphingomyelin phosphodiesterase, acid-like 3A203767900437701979Rat
402221714LOC134483945LIM/homeobox protein Lhx5-like203797232437976724Rat
402301286LOC134483938double homeobox protein A-like203826946938270290Rat
41077662Dux4-ps6double homeobox 4, pseudogene 6203872956338730388Rat
402160293LOC134483948double homeobox protein 4C-like203918799439188434Rat
41089220Duxl3double homeobox like 3203919697639199123Rat
402331966LOC134483947double homeobox protein 4-like protein 4203938579339462146Rat
1307726Tspyl1TSPY-like 1203963703539639594Rat
1306653Tspyl4TSPY-like 4203965378839655784Rat
1305214Nt5dc15'-nucleotidase domain containing 1203966070739763647Rat
2371Col10a1collagen type X alpha 1 chain203973753639744518Rat
41033244LOC120098933uncharacterized LOC120098933203976366239781377Rat
41022072LOC120098931uncharacterized LOC120098931203976632539786443Rat
621423Frkfyn-related Src family tyrosine kinase203982044139926065Rat
11497658LOC108349079uncharacterized LOC108349079204006155440107623Rat
41142806LOC120099067small nucleolar RNA SNORA4204029839040298525Rat
11427217LOC108349026uncharacterized LOC108349026204059843240617517Rat
11390416LOC108349019SUMO-conjugating enzyme UBC9 pseudogene204106043641068366Rat
2318275Rps8-ps3ribosomal protein S8, pseudogene 3204129935141300888Rat
1595809Ppid-ps15peptidylprolyl isomerase D, pseudogene 15204140861241409790Rat
1306379Hs3st5heparan sulfate-glucosamine 3-sulfotransferase 5204166178541972550Rat
40991786Trnat-agu35transfer RNA threonine (anticodon AGU) 35204199607641996150Rat
2320899Rpl13a-ps2ribosomal protein L13A, pseudogene 2204206823742068864Rat
619976Hdac2histone deacetylase 2204210181542126486Rat
2323619Setdb2-ps1SET domain bifurcated histone lysine methyltransferase 2, pseudogene 1204216682242168114Rat
402385454LOC134483816uncharacterized LOC134483816204218786442190614Rat
3028Marcksmyristoylated alanine rich protein kinase C substrate204224018542245882Rat
41384760LOC120098880uncharacterized LOC120098880204227002442296988Rat
402300271LOC134483817large ribosomal subunit protein eL8-like204236894242370186Rat
41269162Snrpc-ps2small nuclear ribonucleoprotein polypeptide C, pseudogene 2204256108042563109Rat
402200918LOC134483821uncharacterized LOC134483821204271178342716671Rat
1596742Hdac1-ps5Histone deacetylase 1, pseudogene 5204304264443044531Rat
7680830LOC102550301uncharacterized LOC102550301204338843343561438Rat
41114181LOC120099020small nucleolar RNA SNORA17204368417743684306Rat
2323304Rfpl4bret finger protein-like 4B204381187743813084Rat
1560062Lama4laminin subunit alpha 4204394689844087972Rat
41277635LOC120098940uncharacterized LOC120098940204396417043971458Rat
7732121LOC102550544M-phase phosphoprotein 6-like204404312644044108Rat
41178998LOC120098941uncharacterized LOC120098941204408124444087677Rat
2300149Fam229bfamily with sequence similarity 229, member B204409349244106871Rat
1306048Tube1tubulin, epsilon 1204410540544124947Rat
1564120Ccn6cellular communication network factor 6204412393244139745Rat
11491188LOC108349081uncharacterized LOC108349081204416890944238707Rat
2641FynFYN proto-oncogene, Src family tyrosine kinase204432263544514498Rat
11381497LOC108349082claudin-7 pseudogene204432295344346743Rat
11514788LOC108349084uncharacterized LOC108349084204456507544567267Rat
1593240Traf3ip2Traf3 interacting protein 2204456599244609240Rat
402265384LOC134483822uncharacterized LOC134483822204457033244594741Rat
402001834LOC134483824uncharacterized LOC134483824204468083544686462Rat
1307087Rev3lREV3 like, DNA directed polymerase zeta catalytic subunit204468648244844668Rat
41070913LOC120099035U6atac minor spliceosomal RNA204470270244702808Rat
2323245Ppig-ps2peptidylprolyl isomerase G, pseudogene 2204484760544849340Rat
1559971Mfsd4b4major facilitator superfamily domain containing 4B4204487898544888435Rat
1304770Mfsd4b2major facilitator superfamily domain containing 4B2204489916444907624Rat
1561777Mfsd4b3major facilitator superfamily domain containing 4B3204492370344948921Rat
631438Naglt1Na+ dependent glucose transporter 1204496595144978400Rat
1310495Mfsd4b1major facilitator superfamily domain containing 4B1204499138445004590Rat
69197Slc16a10solute carrier family 16 member 10204501422945122392Rat
40952207Snora69small nucleolar RNA, H/ACA box 69204516497445165107Rat
1306906Rpf2ribosome production factor 2 homolog204518451145205983Rat
1307434Gtf3c6general transcription factor 3C subunit 6204521090645222888Rat
41119808U3l5small nucleolar RNA U3 like 5204522319945223412Rat
2104Amd1adenosylmethionine decarboxylase 1204525028945324939Rat
2320089LOC100361476vasculin-like protein 1-like204530930945311791Rat
1305435Cdk19cyclin-dependent kinase 19204532491145465121Rat
1592810Slc22a16solute carrier family 22 member 16204552727545647675Rat
1595123DdoD-aspartate oxidase204567348645693056Rat
1564857Mettl24methyltransferase like 24204572450645847300Rat
41121790LOC120098819uncharacterized LOC120098819204582263645841634Rat
1307063Cdc40cell division cycle 40204585573945908239Rat
1561954Wasf1WASP family member 1204590845845956118Rat
70939Gpr6G protein-coupled receptor 6204607248046075251Rat
1311375Fig4FIG4 phosphoinositide 5-phosphatase204618322546306686Rat
1559879Ak9adenylate kinase 9204630710046523537Rat
41295406LOC120098942uncharacterized LOC120098942204651873946525513Rat
1306951Zbtb24zinc finger and BTB domain containing 24204652598246546363Rat
1309386Mical1microtubule associated monooxygenase, calponin and LIM domain containing 1204654798346568487Rat
619753Smpd2sphingomyelin phosphodiesterase 2204656862746571741Rat
1592581Ppil6peptidylprolyl isomerase like 6204657193746600759Rat
70942Cd164CD164 molecule204660643946618015Rat
402283668LOC134483931uncharacterized LOC134483931204665060146661724Rat
1311358Cep57l1centrosomal protein 57-like 1204682035046876911Rat
1307517Sesn1sestrin 1204687691846970010Rat
1562413Armc2armadillo repeat containing 2204697644247083888Rat
1560975Tuba1a-ps2tubulin, alpha 1A, pseudogene 2204720349947205915Rat
1309196Foxo3forkhead box O3204725196847348254Rat
1561501Afg1lAFG1 like ATPase204738058247550307Rat
402298412LOC134483941large ribosomal subunit protein uL29-like204751076147514996Rat
1595151Snx3sorting nexin 3204757405147607577Rat
1595162Nr2e1nuclear receptor subfamily 2, group E, member 1204763234747653464Rat
1564976Ostm1osteoclastogenesis associated transmembrane protein 1204765369647769248Rat
402449031LOC134483933uncharacterized LOC134483933204775490547755399Rat
1595700Gnl3-ps1G protein nucleolar 3, pseudogene 1204781611847818077Rat
1304984Sec63SEC63 homolog, protein translocation regulator204782729147896248Rat
41035048Rps15-ps15ribosomal protein S15, pseudogene 15204792565247929004Rat
1310898Scml4Scm polycomb group protein like 4204792953948023419Rat
402268809LOC134483826uncharacterized LOC134483826204803396748040599Rat
1560479Sobpsine oculis binding protein homolog204806444548243607Rat
15899889030612E09RiklRIKEN cDNA 9030612E09 gene like204824368848245638Rat
1359372Pdss2decaprenyl diphosphate synthase subunit 2204829178848520846Rat
1564849Rpl37a-ps5ribosomal protein L37A, pseudogene 5204854044848540812Rat
1596570Bend3BEN domain containing 3204856238348599194Rat
1597785Mtres1mitochondrial transcription rescue factor 1204860447948622364Rat
1587645Fxc1-ps1fractured callus expressed transcript 1, pseudogene 1204863044348631120Rat
2298Cd24CD24 molecule204865554948661786Rat
7566960LOC102555452uncharacterized LOC102555452204883723548848877Rat
7715446LOC102555396uncharacterized LOC102555396204883994248855247Rat
1586477Nsrp1-ps1nuclear speckle splicing regulatory protein 1, pseudogene 1204887528448877606Rat
1359490Qrsl1glutaminyl-tRNA amidotransferase subunit QRSL1204893985848964812Rat
1563384Rtn4ip1reticulon 4 interacting protein 1204896490349004235Rat
1308629Crybg1crystallin beta-gamma domain containing 1204900767349204040Rat
1359580Atg5autophagy related 5204938083549471826Rat
1311765Prdm1PR/SET domain 1204954246549564088Rat
40988488LOC120098943uncharacterized LOC120098943204976950449778377Rat
7736910LOC102555144uncharacterized LOC102555144204992641149937595Rat
620841Prepprolyl endopeptidase205013858850235549Rat
41014087LOC120098962uncharacterized LOC120098962205021569850246079Rat
41402884LOC120099017small nucleolar RNA SNORA17205033642150336546Rat
1590760Popdc3popeye domain cAMP effector 3205035477550383050Rat
402312127LOC134483834large ribosomal subunit protein eL8-like205036235550363326Rat
1561100Popdc1popeye domain cAMP effector 1205040161150442653Rat
1597432Lin28blin-28 homolog B205044770050547135Rat
1594516Ldha-ps20lactate dehydrogenase A, pseudogene 20205056161050562615Rat
1306114Hace1HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1205061800450733460Rat
402052818LOC134483835uncharacterized LOC134483835205068471750689496Rat
7680841LOC102546399uncharacterized LOC102546399205093721650967397Rat
40949762LOC120099077small nucleolar RNA SNORA48205119991451200057Rat
41045605LOC120099079small nucleolar RNA SNORA17205166098751661119Rat
7520817LOC102546853uncharacterized LOC102546853205169071351695870Rat
1594792Hspd1-ps19heat shock protein family D (Hsp60) member 1, pseudogene 19205270428252705388Rat
2733Grik2glutamate ionotropic receptor kainate type subunit 2205371756454415283Rat
41034537U3l12small nucleolar RNA U3 like 12205377546053775582Rat
6500061LOC100910099UBX domain-containing protein 2A-like205399032453993841Rat
2323886Pitpnc1-ps1phosphatidylinositol transfer protein, cytoplasmic 1, pseudogene 1205475341454754509Rat
402019868LOC134483810elongation factor 1-alpha 1-like205499739754998626Rat
2323755Smokl-ps8sperm motility kinase like, pseudogene 8205502351955032989Rat
402341298LOC134483837uncharacterized LOC134483837205508126155092322Rat
1307995Ascc3activating signal cointegrator 1 complex subunit 3205508943055372374Rat
1309949Sim1SIM bHLH transcription factor 1205540981455489450Rat
1595698Lypla1-ps2lysophospholipase 1, pseudogene 2205553773255539273Rat
41052318LOC120098911cytochrome c, somatic-like205555126355551576Rat
1592289Hormad1-ps1HORMA domain containing 1, pseudogene 1205571699155718455Rat
1594332Cd99CD99 molecule (Xg blood group)205600049456005140Rat
41281609Dhrsxl1dehydrogenase/reductase X-linked like 1205600577756008575Rat
402099549LOC134483911uncharacterized LOC134483911202751572927524248Rat
402321213LOC134483909leucine-rich repeat-containing protein 57-like202753385327540198Rat
402401816LOC134483910uncharacterized LOC134483910202761561827626325Rat
41164318LOC120099055U7 small nuclear RNA202786280727862869Rat
402022143LOC134483913uncharacterized LOC134483913202843817128444984Rat
9199911Cox5b-ps2cytochrome c oxidase subunit 5B, pseudogene 2202850311228503481Rat
402220782LOC134483914uncharacterized LOC134483914202858219528590852Rat
402424585LOC134483804uncharacterized LOC134483804202935233529358387Rat
402424383LOC134483919large ribosomal subunit protein eL39-like203101696231017848Rat
9315662Rpl39l4ribosomal protein L39 like 4202950956329509789Rat
7743730LOC102555785uncharacterized LOC102555785202955074229557139Rat
41192126Rpl27-ps8ribosomal protein L27, pseudogene 8203001510230016028Rat
41153320Trnaa-agc46transfer RNA alanine (anticodon AGC) 46203027988630279958Rat
402407226LOC134483805uncharacterized LOC134483805203029035330317000Rat
402434230LOC134483939uncharacterized LOC134483939203056424830565498Rat
40978765Pin4-ps1peptidylprolyl cis/trans isomerase, NIMA-interacting 4, pseudogene 1203056638430566626Rat
41242957LOC120098925uncharacterized LOC120098925203063277130635037Rat
402116935LOC134483918uncharacterized LOC134483918203071771030722154Rat
402278285LOC134483920uncharacterized LOC134483920203086010030863244Rat
41276760LOC120099075U2 spliceosomal RNA203095617730956366Rat
11383612LOC108353232uncharacterized LOC108353232203100020031014616Rat
402022491LOC134483921uncharacterized LOC134483921203101791431035857Rat
11506631LOC108349068uncharacterized LOC108349068203120776531210372Rat
41252687LOC120098953uncharacterized LOC120098953203127119931280463Rat
9184457LOC103694427heat shock cognate 71 kDa protein pseudogene203139684831398927Rat
9466215LOC103694421uncharacterized LOC103694421203143078131441753Rat
402331802LOC134483940ribosome biogenesis protein NSA2 homolog203157544431579986Rat
7617643LOC102555143uncharacterized LOC102555143203170510931757697Rat
402322600LOC134483808uncharacterized LOC134483808203180087431805933Rat
402168672LOC134483925uncharacterized LOC134483925203200451732006141Rat
402071811LOC134483928uncharacterized LOC134483928203231964732321023Rat
402121345LOC134483812actin-related protein 2/3 complex subunit 2-like203252923832537604Rat
40996192LOC120098877uncharacterized LOC120098877203254359132594190Rat
402398912LOC134483927uncharacterized LOC134483927203264888032654388Rat
41142560LOC120098878uncharacterized LOC120098878203279102232804910Rat
402059277LOC134483813uncharacterized LOC134483813203300688333016755Rat
41275458LOC120098964uncharacterized LOC120098964203360199133609766Rat
41275321Timm21-ps1translocase of inner mitochondrial membrane 21, pseudogene 1204326084143289622Rat
402143531LOC134483944igE-binding protein-like203514777235152777Rat
41393454LOC120099027small nucleolar RNA SNORA17203522731435227415Rat
9266578LOC103694462inactive serine/threonine-protein kinase VRK3 pseudogene203627844636278869Rat
11421040LOC108349075uncharacterized LOC108349075203735916837366297Rat
402438394LOC134483929uncharacterized LOC134483929203751046337512685Rat
41187369Duxl1double homeobox like 1203823504938235870Rat
402334674LOC134483839double homeobox protein A-like203827631638277137Rat
402124142LOC134483946double homeobox protein A-like203837467038375157Rat
41074627LOC120099038small nucleolar RNA U3203915173039151803Rat
11464501LOC108349077uncharacterized LOC108349077203957565039592338Rat
41360633LOC120099026small nucleolar RNA SNORA17204052867740528791Rat
11367462LOC108353252uncharacterized LOC108353252204068257140683583Rat
402311095LOC134483815uncharacterized LOC134483815204173236241764500Rat
41323209LOC120098996uncharacterized LOC120098996204224802442256009Rat
402413733LOC134483819GATOR2 complex protein MIOS-like204235644742437066Rat
7511826LOC102555751uncharacterized LOC102555751204244216742495575Rat
41000584Trnap-agg35transfer RNA proline (anticodon AGG) 35204247774642477827Rat
41345323LOC120098865uncharacterized LOC120098865204259420442622998Rat
41048958LOC120099043U6 spliceosomal RNA204268514042685246Rat
40933646LOC120098872uncharacterized LOC120098872204463545444639806Rat
41308985LOC120098823uncharacterized LOC120098823204488851944898758Rat
41212620LOC120099078small nucleolar RNA SNORA17204508670045086830Rat
11453714LOC108349085uncharacterized LOC108349085204517685745190599Rat
41301348Snora9bsmall nucleolar RNA, H/ACA box 9B204520970745209839Rat
41199725LOC120098816uncharacterized LOC120098816204524494945246716Rat
41092752Tmem258-ps3transmembrane protein 258, pseudogene 3204530699045307697Rat
41043910LOC120099041U6 spliceosomal RNA204536057945360685Rat
41379544LOC120098955uncharacterized LOC120098955204588823145893510Rat
41335936LOC120099022small nucleolar RNA SNORA17204620794446208077Rat
41100586LOC120099040U6 spliceosomal RNA204626563846265744Rat
7715735Utp15-ps1UTP15, small subunit processome component204632720246335896Rat
7514220Ccdc162coiled-coil domain containing 162204662727746820216Rat
7514024LOC102556488uncharacterized LOC102556488205082546050856591Rat
41165970LOC120098881uncharacterized LOC120098881204666803346670653Rat
9432030LOC103694446uncharacterized LOC103694446204708395447087038Rat
402120917LOC134483825uncharacterized LOC134483825204709215647102365Rat
9214605LOC103690421uncharacterized LOC103690421204713594247149879Rat
7692592LOC102550328uncharacterized LOC102550328204715026047159897Rat
40938314Trnas-agatransfer RNA serine (anticodon AGA)204720571547205787Rat
7507083LOC102555657uncharacterized LOC102555657204721742347245187Rat
402056572LOC134483932ATP synthase subunit g, mitochondrial-like204722261347231439Rat
7752734LOC102550842uncharacterized LOC102550842204790651547907534Rat
402194120LOC134483827uncharacterized LOC134483827204830888048324708Rat
7734252LOC102551730uncharacterized LOC102551730204839490048437801Rat
41106824LOC120098891uncharacterized LOC120098891204879901348813811Rat
402198076LOC134483829uncharacterized LOC134483829204882063848834344Rat
402103364LOC134483830uncharacterized LOC134483830204886530348904798Rat
402310765LOC134483832heat shock cognate 71 kDa protein-like204925950749279850Rat
7724322LOC102554815uncharacterized LOC102554815204931605249380802Rat
9429739Chac2-ps1ChaC glutathione specific gamma-glutamylcyclotransferase 2, pseudogene 1204981711549817909Rat
41190492LOC120099049U6 spliceosomal RNA204984323949843351Rat
7572424LOC102555236uncharacterized LOC102555236204984372549963496Rat
402077792LOC134483831uncharacterized LOC134483831205013215550138388Rat
40971550LOC120099073small nucleolar RNA SNORA29205033096650331092Rat
7685344Cinp-ps1cyclin-dependent kinase 2-interacting protein, pseudogene 1205114546751153554Rat
7579307LOC102546775uncharacterized LOC102546775205117442851178419Rat
41257541LOC120098847uncharacterized LOC120098847205145755551509208Rat
11487133Psma6-ps5proteasome 20S subunit alpha 6, pseudogene 5205370977053711334Rat
402012170LOC134483836uncharacterized LOC134483836205449702554503301Rat
7602621LOC102549728uncharacterized LOC102549728205568897255700698Rat
7640727LOC102556677uncharacterized LOC102556677205597905155990227Rat
9162380LOC103694460uncharacterized LOC103694460205599697956000450Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11106D20Arb6309203760767037607979Ratregion
33876D20Mit4202203372439233724594Ratregion
33997D20Mit1130204929228849292418Ratregion
37570D20Rat38209204597845445978663Ratregion
35244D20Rat9130203300621033006340Ratregion
36807D4Rat71481203112567531126156Ratregion
37792D20Rat29227204918924949189476Ratregion
37888D20Rat34140202692491626925056Ratregion
36785D20Rat12161203404054834040709Ratregion
34817D20Rat8160202873125928731419Ratregion
38216D20Rat22223203215696732157190Ratregion
38304D20Rat19183204613123446131417Ratregion
40366D20Rat52159203581480335814962Ratregion
38714D20Rat43256203175496731755223Ratregion
38760D20Rat39221204324547543245696Ratregion
38762D20Rat40199203494472134944920Ratregion
39998D20Rat64206202986483329865039Ratregion
40194D20Rat65128203086853430868662Ratregion
38836D20Rat37110203071630430716414Ratregion
38856D20Rat44132203132591431326046Ratregion
38948D20Rat24126204614540846145534Ratregion
39336D20Rat78208202825422828254436Ratregion
42096D20Arb10270205289624052896510Ratregion
41496D20Rat56142204581680745816949Ratregion
42434D20Rat81177204534594045346117Ratregion
41700D20Rat70187203144024231440429Ratregion
43146D20Rat76251203382093133821182Ratregion
43147D20Rat77126203268798932688115Ratregion
45706D20Got47206205080085350801059Ratregion
60789D20Wox1134202884055528840689Ratregion
60273D20Got33262203047633030476592Ratregion
60275D20Got41134204766018147660315Ratregion
60277D20Got44250205421328054213530Ratregion
1629533D20Wox10352203630162736301979Ratregion
1639286D20Got51222204929226949292491Ratregion
5035729RH70579231204607329246073523Ratregion
5034285RH142064202202793228727932489Ratregion
5031932AU046653136205441286054412996Ratregion
5030673BE107575206204311543443115640Ratregion
5052007RH94785269203077341230773681Ratregion
5053839RH142880178203027178730271965Ratregion
5043342RH129971678204894420248944880Ratregion
5040260RH128181918202924072229241640Ratregion
5076830RH13940366205599778055997846Ratregion
5077922RH140037205204224075642240961Ratregion
5068800AU046922227205558710055587327Ratregion
5068856AU046883192204541388645414078Ratregion
5065980BE116382180204865770448657884Ratregion
5062056BI294843152205043429550434447Ratregion
5061036BF389775156204517688745177043Ratregion
5062898BI295453217204954408249544299Ratregion
5088449AU048576125205158300151583126Ratregion
5083223BI275478194203077924230779436Ratregion
5507727REN49512242204770041047700652Ratregion
5504250G42353121204766178647661907Ratregion
5501780MARC_12153-12154:1004708400:3705202859863328599338Ratregion
11528637rs105739537203499297634992976Ratregion
11528638rs197893447203376412433764124Ratregion
11528639rs105033786203629365136293651Ratregion
5500585RH136086704202703474727035451Ratregion
5028967RH143005243205082413550824378Ratregion
7191221D20Mit1130204929228849292418Ratregion
5041138RH128684207204954257149542778Ratregion
5074944RH138309129202796054227960671Ratregion
5080210RH141448455204246020242460657Ratregion
5080882RH141837183203296125032961433Ratregion
Position Markers

Flank 1: (D20Rat27)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22029,244,388 - 29,244,578 (+)MAPPER
Rnor_6.02030,913,481 - 30,913,670NCBI
Rnor_5.02032,704,500 - 32,704,689UniSTS
RGSC_v3.42028,656,553 - 28,656,743RGD
RGSC_v3.42028,656,554 - 28,656,743UniSTS
Celera2030,677,565 - 30,677,754UniSTS
RGSC_v3.12028,670,353 - 28,670,543RGD
FHH x ACI Map2014.6699UniSTS
FHH x ACI Map2014.6699RGD
Cytogenetic Map20q11UniSTS
Peak: (D20Rat29)
Rat AssemblyChrPosition (strand)Source
GRCr82049,189,249 - 49,189,476 (+)Marker Load Pipeline
mRatBN7.22047,606,609 - 47,606,836 (+)MAPPER
Rnor_6.02049,108,730 - 49,108,956NCBI
Rnor_5.02050,747,252 - 50,747,478UniSTS
RGSC_v3.42048,055,660 - 48,055,886UniSTS
RGSC_v3.42048,055,659 - 48,055,886RGD
Celera2052,382,178 - 52,382,404UniSTS
RGSC_v3.12048,084,356 - 48,084,583RGD
RH 3.4 Map20516.71RGD
RH 3.4 Map20516.71UniSTS
RH 2.0 Map20605.6RGD
SHRSP x BN Map2043.54RGD
FHH x ACI Map2031.8299RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203215696745978663Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
11528640Bss121Bone structure and strength QTL 1216.722e-07femur morphology trait (VT:0000559)femur length (CMO:0000442)203376412436293651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general parental S allele was responsible for improved cognitive performance 1581615