Rf56 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Rf56 (Renal function QTL 56) Rattus norvegicus

Symbol: Rf56
Name: Renal function QTL 56
RGD ID: 1598839
Trait: renal blood flow trait   (VT:2000006)    
Measurement Type: ratio of change in renal blood flow to change in renal perfusion pressure   (CMO:0001239)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,907,761 - 257,976,495RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01266,793,821 - 279,986,079RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01274,224,224 - 287,349,830RGDRnor5.0
RGSC_v3.41252,340,389 - 265,343,617RGDRGSC3.4
RGSC_v3.11252,604,962 - 265,554,662RGD
Cross Type: Not Available
Strains Crossed: FHH.FHH.1BN-(D1Mgh13-D1Rat89)/Mcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Rf56Ratratio of change in renal blood flow to change in renal perfusion pressure  IDA 1579884 RGD 

Experimental Condition
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Rf56Ratcontrolled in situ renal perfusion pressure  IDA 1579884 RGD 

Measurement Method
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Rf56Ratultrasonic flowmeter  IDA 1579884 RGD 

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Rf56RatFHH.FHH.1BN-(D1Mgh13-D1Rat89)/Mcwi  IEA 1579884 RGD 

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Rf56Ratrenal blood flow trait  IDA 1579884 RGD 

Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Identification of a QTL on chromosome 1 for impaired autoregulation of RBF in fawn-hooded hypertensive rats. Lopez B, etal., Am J Physiol Renal Physiol. 2006 May;290(5):F1213-21. Epub 2005 Nov 22.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2911Inainternexin neuronal intermediate filament protein, alpha1245896775245908330Rat
1306904Pcgf6polycomb group ring finger 61245925354245944964Rat
1311332Taf5TATA-box binding protein associated factor 51245958428245973914Rat
631426Atp5mkATP synthase membrane subunit K1245973910245980702Rat
1304933Pdcd11programmed cell death 111245980840246021999Rat
1308276Calhm2calcium homeostasis modulator family member 21246022324246028050Rat
1564891Calhm1calcium homeostasis modulator 11246030269246032988Rat
1560215Calhm3calcium homeostasis modulator 31246043258246048259Rat
1307021Neurl1neuralized E3 ubiquitin protein ligase 11246066830246152890Rat
1311185Sh3pxd2aSH3 and PX domains 2A1246153660246359806Rat
7669753LOC102552122uncharacterized LOC1025521221246184403246206661Rat
1305637Stn1STN1 subunit of CST complex1246391311246429844Rat
41393987Trnap-agg27transfer RNA proline (anticodon AGG) 271246363658246363732Rat
41091111LOC120100049uncharacterized LOC1201000491246439526246443224Rat
3780SlkSTE20-like kinase1246473712246529643Rat
1311130Col17a1collagen type XVII alpha 1 chain1246530589246577559Rat
41137166LOC120100048uncharacterized LOC1201000481246401890246417045Rat
11396518LOC10834979440S ribosomal protein S8 pseudogene1246463433246465508Rat
41256121Rnu6-982RNA, U6 small nuclear 9821246601434246601537Rat
1305481Sfr1SWI5-dependent homologous recombination repair protein 11246619235246623250Rat
1560545Cfap43cilia and flagella associated protein 431246625259246712438Rat
41268803LOC120100451small nucleolar RNA SNORA171246597266246597365Rat
70952Gsto1glutathione S-transferase omega 11246721089246731228Rat
1310764Gsto2glutathione S-transferase omega 21246731314246757592Rat
41387482LOC120100050uncharacterized LOC1201000501246782447246786746Rat
4888614Mir3584microRNA 35841246786249246786329Rat
6488464Itpripinositol 1,4,5-trisphosphate receptor interacting protein1246762804246786379Rat
7656374Cfap58cilia and flagella associated protein 581246802691246911363Rat
1310974Sorcs3sortilin-related VPS10 domain containing receptor 31247099178247734027Rat
1561154Hspa8-ps17heat shock protein family A (Hsp70) member 8, pseudogene 171248670456248672399Rat
7579721LOC102554215uncharacterized LOC1025542151249022403249054065Rat
1305910Sorcs1sortilin-related VPS10 domain containing receptor 11249080662249594520Rat
11516969Rpl21l7ribosomal protein L21 like 71246824363246825515Rat
11514905Trnak-cuu1transfer RNA lysine (anticodon CUU) 11247030084247030156Rat
41361186LOC120100051uncharacterized LOC1201000511247131099247134646Rat
11496109Trnak-cuu2transfer RNA lysine (anticodon CUU) 21247319517247319589Rat
41068081LOC120100433small nucleolar RNA SNORA171247357347247357477Rat
41147363LOC120100052uncharacterized LOC1201000521247854390247857655Rat
41295772LOC120100408small nucleolar RNA SNORA481247861966247862109Rat
7531295LOC102553570uncharacterized LOC1025535701248166322248202658Rat
41196429LOC120100053uncharacterized LOC1201000531248469246248525675Rat
2322523Timm23-ps4translocase of inner mitochondrial membrane 23, pseudogene 41249007955249008573Rat
40971877LOC120100146U6 spliceosomal RNA1250185783250185889Rat
1596933Cwf19l2-ps1CWF19 like cell cycle control factor 2, pseudogene 11250318679250320350Rat
2321699Zc3h15-ps1zinc finger CCCH-type containing 15, pseudogene 11250612247250613733Rat
1587125LOC679558hypothetical protein LOC6795581250821292250822426Rat
1587108Nup133-ps1nucleoporin 133, pseudogene 11251080269251083455Rat
2915Ins1insulin 11251244973251245540Rat
1332901Olr385olfactory receptor 3851251304771251307962Rat
1566300Rccd1-ps1RCC1 domain containing 1, pseudogene 11251725706251730317Rat
1561333Rpl8l1ribosomal protein L8 like 11251920614251921456Rat
41122474LOC120097667uncharacterized LOC1200976671249571775249580832Rat
7651693LOC102554335uncharacterized LOC1025543351249604941249670248Rat
41095611LOC120100054uncharacterized LOC1201000541250331260250352395Rat
621274Xpnpep1X-prolyl aminopeptidase 11252001366252052077Rat
7749911Mrpl2-ps1mitochondrial ribosomal protein L2, pseudogene 11252045464252046435Rat
2043Add3adducin 31252147341252255126Rat
3128Mxi1MAX interactor 1, dimerization protein1252323915252383682Rat
11517691LOC108349710uncharacterized LOC1083497101252334236252340443Rat
1309151Smndc1survival motor neuron domain containing 11252389675252400749Rat
41351795LOC120100378U2 spliceosomal RNA1252426043252426198Rat
11415116LOC108349045uncharacterized LOC1083490451252109375252149429Rat
620854Dusp5dual specificity phosphatase 51252538408252555320Rat
62006Smc3structural maintenance of chromosomes 31252601422252644522Rat
1307427Rbm20RNA binding motif protein 201252683760252907465Rat
41301989LOC120100058uncharacterized LOC1201000581252872519252877817Rat
620816Pdcd4programmed cell death 41252921342252944278Rat
1308146Shoc2SHOC2 leucine-rich repeat scaffold protein1252958939253048820Rat
2056Adra2aadrenoceptor alpha 2A1253061480253064280Rat
41268475LOC120100059uncharacterized LOC1201000591253197596253204527Rat
41013695Cenpt-ps1centromere protein T, pseudogene 11253768789253770732Rat
41317161LOC120098089uncharacterized LOC1200980891254003917254009248Rat
41252668LOC120100060uncharacterized LOC1201000601254013915254016089Rat
61847Gpamglycerol-3-phosphate acyltransferase, mitochondrial1254106323254170755Rat
41394270LOC120098625extensin-like1254155889254157007Rat
1305835Tectbtectorin beta1254221621254236669Rat
621853Gucy2gguanylate cyclase 2G1254237778254280277Rat
69402Acsl5acyl-CoA synthetase long-chain family member 51254289513254336608Rat
1304657Zdhhc6zinc finger DHHC-type palmitoyltransferase 61254335472254356141Rat
9333280LOC103691375uncharacterized LOC1036913751252424747252428991Rat
7499870LOC102551352uncharacterized LOC1025513521252461331252463112Rat
41311433LOC120100056uncharacterized LOC1201000561252464379252469037Rat
2321899Rps12l2ribosomal protein S12-like 21252597641252598162Rat
6498801Bbip1BBSome interacting protein 11252943589252959512Rat
41188207LOC120100368small nucleolar RNA SNORA201252970938252971065Rat
7726077LOC102552097uncharacterized LOC1025520971253539545253560364Rat
7724630LOC102553657uncharacterized LOC1025536571254033150254040657Rat
621490Vti1avesicle transport through interaction with t-SNAREs 1A1254356343254661854Rat
1583621Tcf7l2transcription factor 7 like 21254785956254978967Rat
7536522LOC102554304uncharacterized LOC1025543041254627579254634331Rat
41026487Trnav-aac8transfer RNA valine (anticodon AAC) 81254740030254740104Rat
41149020LOC120100061uncharacterized LOC1201000611254786514254787294Rat
41219028LOC120098090uncharacterized LOC1200980901255073423255091957Rat
1302979Habp2hyaluronan binding protein 21255315870255350161Rat
41158907LOC120100062uncharacterized LOC1201000621255013488255019258Rat
9414347LOC103691380uncharacterized LOC1036913801255148172255204240Rat
40981878LOC120100063uncharacterized LOC1201000631255235859255269252Rat
41305682LOC120100434small nucleolar RNA SNORA171255305326255305444Rat
1306731Nrapnebulin-related anchoring protein1255350113255427704Rat
620944Casp7caspase 71255437438255476737Rat
1559884Plekhs1pleckstrin homology domain containing S11255495634255525353Rat
1590633Rpl19-ps2ribosomal protein L19, pseudogene 21255566283255566849Rat
1306156Dclre1aDNA cross-link repair 1A1255569911255589815Rat
1307348Nhlrc2NHL repeat containing 21255589743255648904Rat
9261776LOC103691381uncharacterized LOC1036913811255556923255559966Rat
41293690LOC120100457small nucleolar RNA SNORA171255568950255569042Rat
2059Adrb1adrenoceptor beta 11255771962255774973Rat
1307158Ccdc186coiled-coil domain containing 1861255831663255871954Rat
1306140Tdrd1tudor domain containing 11255871939255919222Rat
7525733LOC102547573uncharacterized LOC1025475731255694149255706423Rat
41207760LOC120100064uncharacterized LOC1201000641255706500255711236Rat
7702517LOC102547814uncharacterized LOC1025478141255819667255823784Rat
1562000Vwa2von Willebrand factor A domain containing 21255922263255963920Rat
1565768Ablim1actin-binding LIM protein 11256083747256372075Rat
1310668Afap1l2actin filament associated protein 1-like 21255964238256060828Rat
41351922LOC120100065uncharacterized LOC1201000651256172493256186233Rat
41058777LOC120100066uncharacterized LOC1201000661256380079256388222Rat
1306116Fhip2aFHF complex subunit HOOK interacting protein 2A1256417533256444109Rat
1308502Trub1TruB pseudouridine synthase family member 11256513418256554549Rat
7489025Mir6316microRNA 63161256501216256501316Rat
1563485Atrnl1attractin like 11256670976257219291Rat
7554379LOC102551125uncharacterized LOC1025511251256568371256577944Rat
41120400LOC120097692uncharacterized LOC1200976921257220491257242191Rat
41071757Rps19-ps14ribosomal protein S19, pseudogene 141256991846256992391Rat
2681Gfra1GDNF family receptor alpha 11257315682257552004Rat
11499189LOC108349828uncharacterized LOC1083498281257234383257241269Rat
1359412Ccdc172coiled-coil domain containing 1721257629188257682373Rat
3360Pnlippancreatic lipase1257774012257811656Rat
620792Pnliprp1pancreatic lipase-related protein 11257867885257883514Rat
620793Pnliprp2pancreatic lipase related protein 21257897766257916434Rat
1584737Spmip5sperm microtubule inner protein 51257926555257934873Rat
1305531Hspa12aheat shock protein family A (Hsp70) member 12A1257935642258096602Rat
41170528Trnap-ggg9transfer RNA proline (anticodon GGG) 91257579412257579492Rat
7573768LOC102556644uncharacterized LOC1025566441257337682257361907Rat
40936949Trnap-ggg2transfer RNA proline (anticodon GGG) 21257560546257560626Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10097D1Smu21291253050519253050648Ratregion
10105D1Smu11691255785337255785506Ratregion
10805D1Mgh131491245907761245907899Ratregion
34194D1Mgh141491256448513256448636Ratregion
34232D1Mgh151501254773191254773351Ratregion
36169D1Rat891711257976324257976495Ratregion
36828D1Rat851601251790438251790570Ratregion
37896D1Rat1261501255535135255535265Ratregion
37956D1Rat1952101257280117257280333Ratregion
36524D1Rat871671254527799254527966Ratregion
36703D1Rat861461252085048252085212Ratregion
38618D1Rat1661391248393012248393157Ratregion
42090D1Arb462901245907716245908012Ratregion
42544D1Rat4542391246190345246190573Ratregion
42546D1Rat4772051250850662250850846Ratregion
42547D1Rat4562051254304565254304772Ratregion
42551D1Rat4621491254773192254773351Ratregion
41060D1Rat3071201246062119246062233Ratregion
43442D1Got2391181246354238246354356Ratregion
43443D1Got2471221247683763247683883Ratregion
43444D1Got2491491247115893247116042Ratregion
43447D1Got2502791252080660252080937Ratregion
43448D1Got2511661253439653253439819Ratregion
43449D1Got2531431252223685252223828Ratregion
43450D1Got2522021252422730252422929Ratregion
43451D1Got2571661253962015253962181Ratregion
43454D1Got2541831257090986257091168Ratregion
43456D1Got2562761254863497254863775Ratregion
43457D1Got2552271256778553256778780Ratregion
60228D1Got2421561248835428248835584Ratregion
60229D1Got2432961249464806249465102Ratregion
60230D1Got2442191249000135249000354Ratregion
67781D1Uwm91641256723924256724090Ratregion
1576371D1Ztm52981251258770251259068Ratregion
1576377D1Ztm41651251246901251247066Ratregion
1576379D1Ztm62381251260995251261233Ratregion
1576390D1Ztm32791251246810251247089Ratregion
1632205D1Got3691151253527858253527968Ratregion
1600314D1Swe62821249556757249557041Ratregion
1600318D1Swe22041247865838247866042Ratregion
1600320D1Swe42011248746112248746313Ratregion
1600322D1Swe32581248192346248192604Ratregion
1600324D1Swe82101252645447252645657Ratregion
1600326D1Swe72061252398190252398396Ratregion
1600328D1Swe52941249396204249396498Ratregion
1629026D20Wox19961254710586254710643Ratregion
1641442D1Got3512151246809750246809965Ratregion
1641588D1Cebr42891256573653256573942Ratregion
1633133D1Got3522301251223729251223961Ratregion
7192160Gfra101257549390257550527Ratregion
7192876Ins21841251245333251245517Ratregion
7193086AA8931441061256764507256764613Ratregion
5035833PMC21231P13011251245156251245457Ratregion
5035835PMC21334P12291251245210251245439Ratregion
5038902RH1273981801252383464252383644Ratregion
5036374Ins23001251245160251245460Ratregion
5039060RH1274892001256443804256444004Ratregion
5036803AU0492561871253702051253702238Ratregion
5031268PMC123023P17071251245183251245392Ratregion
5026210RH1313362141257916217257916431Ratregion
5031538AU0479992931249246112249246400Ratregion
5034662BF3908301851252334266252334451Ratregion
5029349RH1444581841256412438256412622Ratregion
5034780AA8931442031256764408256764613Ratregion
5026840RH1337312031252943433252944252Ratregion
5029437Tcf7l22741254976986254977260Ratregion
5035084WIAF-16761371255355475255355612Ratregion
5026976RH1342512171245907905245908122Ratregion
5027018RH1344192141254106538254106752Ratregion
5029585BE1013861651252393793252394491Ratregion
5029653BF3866521661256170210256170376Ratregion
5035382BE1072511521246021754246021906Ratregion
5027179SHGC-1520962231248109316248109539Ratregion
5029869BE0970271681246151903246152071Ratregion
5027549AW5556411071257211591257211698Ratregion
5032943RH1370471531255569988255570141Ratregion
5030257BE0996641531257315730257315883Ratregion
502782502.MMHAP26FLA2.seq2131251821549251821771Ratregion
502787118.MMHAP22FRF9.seq1471255257842255257989Ratregion
5033405RH1387141511254969861254970012Ratregion
5025626RH1290411901252001395252001585Ratregion
5025626RH1290411901252001395252002084Ratregion
5030907BF4112741171256592203256592320Ratregion
5052031RH947993001251245137251245437Ratregion
5053423RH1426401371254977123254977260Ratregion
5053807RH1428621311249589323249589454Ratregion
5053993RH1429691641246158921246159085Ratregion
5053997RH1429711461255643663255643809Ratregion
5051935RH947431701253050475253050643Ratregion
5054327RH1431602201246501414246501634Ratregion
5055263RH1437001341256422523256422657Ratregion
5059426AW5307051571249577642249577799Ratregion
5055509RH1438421411256060567256060708Ratregion
5055703RH1439541091254432108254432217Ratregion
5058574AI5492141901255964325255964515Ratregion
5056203RH1442432921253099772253100064Ratregion
5056245RH1442672091249224379249224588Ratregion
5056931RH1446631551254045849254046004Ratregion
5056809RH1445931661256130175256130341Ratregion
5055481RH1438261121252324057252324169Ratregion
5059844BF3880331741256200132256200306Ratregion
5055641RH1439181821252683081252683263Ratregion
5058320BG3762471101252382445252382555Ratregion
5058466BI2903371701246786497246786667Ratregion
5050336RH1339971951246531473246531668Ratregion
5053355RH1426011471257209702257209849Ratregion
5057824BF3862221511255823611255823762Ratregion
5052565AA5895082591246153762246154021Ratregion
5052565AA5895082591246153762246154021Ratregion
5050914RH1343312151255451831255452046Ratregion
5051006RH1343832171246622927246623144Ratregion
5054833RH1434511411246531445246531586Ratregion
5043240RH1299122201246020919246021139Ratregion
5044520RH1306501821256555090256555272Ratregion
5044786RH1308031981254763150254763348Ratregion
5041308RH1287821981254627635254627833Ratregion
5045402RH1311572101257807548257808665Ratregion
5046228RH1316322151255698137255698352Ratregion
5041662RH1289861961249085276249085472Ratregion
5044444RH1306061881257935715257935903Ratregion
5047666RH1324581971255350245255351026Ratregion
5045712RH1313352091254338013254338222Ratregion
5047774RH1325212081256669184256669392Ratregion
5046666RH1318852131252129567252129780Ratregion
5049024RH1332422101257062098257062308Ratregion
5049730RH1336481651251720710251720875Ratregion
5049786RH1336812041246530617246530821Ratregion
5039690RH1278512031245925573245925776Ratregion
5039858RH1279471841246762917246763101Ratregion
5039928RH1279882041246153932246154136Ratregion
5039928RH1279882041246153932246154136Ratregion
5042090RH1292332161252001560252001776Ratregion
5043248RH1299172141256085891256086105Ratregion
5039674RH1278412191252254804252255023Ratregion
7191238Tcf7l211651254977143254978308Ratregion
5042374RH1293971881252390321252390509Ratregion
5041098RH1286611891256084552256084741Ratregion
5041198RH1287182181245973628245973846Ratregion
5043646RH1301451951257211484257211679Ratregion
5072300RH1367692371246152583246152820Ratregion
5074770RH1382081411255838830255838969Ratregion
5076202RH1390381281246158812246158940Ratregion
5078062RH1401221881255098817255099005Ratregion
5079780RH1411992031246022382246022585Ratregion
5079854RH1412411801251969497251969541Ratregion
5077838RH1399891801253063937253064117Ratregion
5080206RH1414461821256141315256141497Ratregion
5078446RH1403481201249080890249081010Ratregion
5070696RH1346521911255518592255518783Ratregion
5080364RH1415372121245907568245907780Ratregion
5080470RH1415971811252883185252883366Ratregion
5071530RH1351351831254661178254661361Ratregion
5074216RH1378881431249399008249399151Ratregion
5064968BF405363901257165154257165246Ratregion
5066634AU0482412431246858619246858862Ratregion
5067354AU0478051841257579204257579388Ratregion
5067648AU0476191461253752854253753000Ratregion
5068482AU0471191801255198839255199016Ratregion
5068674AU0470021421251642991251643133Ratregion
5069168AU0466792181248616175248616393Ratregion
5070410AI840429931257935998257936091Ratregion
5060080BF3884501521256590032256590184Ratregion
5061958BI2944722431256553191256553434Ratregion
5063674BE1079511841249228447249228631Ratregion
5062172BE1128772041252942920252943124Ratregion
5060904BF3959462111252973518252973729Ratregion
5064356BI3020811861251660138251660326Ratregion
5061876AW5339561561252134608252134766Ratregion
5063660BE1079302131252998768252998981Ratregion
5065228BE1212341601252601570252601730Ratregion
5063864AW5290531941257320279257320473Ratregion
5060830BF4011231631249515864249516027Ratregion
5062570BE1068671501254813057254813207Ratregion
5064266BE1209421571257219085257219242Ratregion
5064432BF3992031631255642883255643046Ratregion
5062960BF3981151651254970601254970723Ratregion
5064556BF3993611741256084987256085161Ratregion
5061234BE1113041791252541408252541587Ratregion
5061396BF3963251461254791210254791356Ratregion
5063190BE1138782081257967434257967642Ratregion
5082295BE1191151851245993603245993788Ratregion
5087688UniSTS:1410431001255773467255773567Ratregion
5089857AU0494042311246788811246789042Ratregion
5085316BQ2012941711246155968246156113Ratregion
5085549BE0977691541254294052254294206Ratregion
5085559BM3905581761255729304255729480Ratregion
5080774RH1417742091255696799255697008Ratregion
5090385AU0497192711252591617252592681Ratregion
5090609AU0498541971251549310251549507Ratregion
5080858RH1418231841256443103256443287Ratregion
5084428AA9448481981256138832256139030Ratregion
5086284BQ2061422171253050868253051086Ratregion
5084778AI4108951441255648715255648859Ratregion
5083287BG3808721461257215887257216033Ratregion
5086506AI5020212161254970112254970328Ratregion
5083745AA8915861351254369124254369259Ratregion
5135430D1Hmgc161941246983819246984013Ratregion
5135430D1Hmgc161941246983819246984013Ratregion
5503918Adrb15221255772489255773011Ratregion
5504216RH799411861256991960256992146Ratregion
5504918Casp7941255476168255476262Ratregion
5505490GDB:602855201251517809251519113Ratregion
5501730UniSTS:2670032181251245261251245479Ratregion
550015917.MMHAP36FRF8.seq11741252666801252667975Ratregion
5500308GDB:1798751001251880456251880556Ratregion
5501019PMC123023P33321251245148251245480Ratregion
5501657PMC24644P61881251245286251245474Ratregion
5502228Ins13021251245159251245461Ratregion
5502678Acsl5741254331296254331569Ratregion
5502977Gfra101257549390257550528Ratregion
5527390D1Hmgc211931248138231248138424Ratregion
35655D1Rat841661252279996252280168Ratregion
39420D1Rat3112481256516557256516797Ratregion
40810D13Rat1092021255288079255288289Ratregion
41822D1Rat4522061246126055246126259Ratregion
629595D1Hmgc21771247043567247043744Ratregion
629595D1Hmgc21771247043567247043744Ratregion
629596D1Hmgc31541247779589247779743Ratregion
1633380D1Got4081891248837988248838177Ratregion
7192481Ins13121251245167251245479Ratregion
5027115STS-F04204621254107658254107720Ratregion
5027349AA9865401391251245377251245516Ratregion
5029965BF3882711911252385821252386012Ratregion
5056327RH1443141111252944762252944873Ratregion
5058956BF3872991801246753680246753860Ratregion
5059244BF3878471501256127756256127906Ratregion
5047564RH1324002051254336366254336571Ratregion
5047644RH1324462121257424447257424659Ratregion
5040710RH1284392031252401044252401735Ratregion
5076472RH1391951321246528283246528415Ratregion
5067874AU0474841201250784226250784346Ratregion
5060790BF3891461601253049767253049927Ratregion
5088931AU0488551461249832247249832393Ratregion
5088931AU0488551461249832293249832393Ratregion
5527120D1Hmgc191491249583745249583894Ratregion
5527274D1Hmgc201301246355367246355497Ratregion
Position Markers

Flank 1: (D1Mgh13)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,907,761 - 245,907,899 (+)MAPPER
Rnor_6.01266,793,821 - 266,793,958NCBI
Rnor_5.01274,224,224 - 274,224,361UniSTS
RGSC_v3.41252,340,389 - 252,340,527RGD
RGSC_v3.41252,340,390 - 252,340,527UniSTS
RGSC_v3.11252,604,962 - 252,605,100RGD
Celera1241,679,423 - 241,679,560UniSTS
RH 3.4 Map11641.5UniSTS
RH 3.4 Map11641.5RGD
RH 2.0 Map11237.1RGD
Cytogenetic Map1q54UniSTS
Flank 2: (D1Rat89)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21257,976,324 - 257,976,495 (+)MAPPER
Rnor_6.01279,985,909 - 279,986,079NCBI
Rnor_5.01287,349,660 - 287,349,830UniSTS
RGSC_v3.41265,343,371 - 265,343,617RGD
RGSC_v3.41265,343,447 - 265,343,617UniSTS
RGSC_v3.11265,554,492 - 265,554,662RGD
Celera1253,635,242 - 253,635,412UniSTS
RH 3.4 Map11692.3RGD
RH 3.4 Map11692.3UniSTS
RH 2.0 Map11311.6999RGD
SHRSP x BN Map1145.88RGD
Cytogenetic Map1q55UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
1600399Niddm65Non-insulin dependent diabetes mellitus QTL 650.004blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1248746112249254376Rat
1600384Niddm66Non-insulin dependent diabetes mellitus QTL 660.000005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1252645447253439819Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1600390Niddm64Non-insulin dependent diabetes mellitus QTL 640.003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1247683763248192604Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228985440245907899Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1245907761257976495Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_disease QTL defines a region containing a gene or genes associated with impaired autoregulation of RBF, proteinuria, and glomerular disease in FHH rats 1579884