Sual1 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: Sual1 (Serum uric acid level QTL 1) Rattus norvegicus

Symbol: Sual1
Name: Serum uric acid level QTL 1
RGD ID: 1582252
Also known as: Uric acid (10 months)
Trait: blood uric acid amount   (VT:0010302)    
Measurement Type: blood uric acid level   (CMO:0000501)    
LOD Score: 3.4
P Value: 0.0123
Variance: 12.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2396,127,817 - 102,200,699RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.03100,730,984 - 106,900,596RGD_MAPPER_PIPELINERnor6.0
Rnor_5.03107,333,676 - 113,470,358RGDRnor5.0
RGSC_v3.4356,359,980 - 101,359,980RGDRGSC3.4
RGSC_v3.1356,256,444 - 101,256,444RGD
Cross Type: intercross
Strains Crossed: PD/Cub BN/Cub 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
colorimetry  (IDA)

Vertebrate Trait

Rat Strain
BN/Cub  (IEA)
PD/Cub  (IEA)

References

References - curated
1. Seda O, etal., Physiol Genomics. 2005 Apr 14;21(2):243-52. Epub 2005 Feb 22.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
620027Chrm5cholinergic receptor, muscarinic 539928484699337252Rat
68952Ryr3ryanodine receptor 339943175599979125Rat
3669Scg5secretogranin V3100544101100588558Rat
2694Gjd2gap junction protein, delta 23100771450100776134Rat
2026Actc1actin, alpha, cardiac muscle 13100811987100817523Rat
628615Lgr4leucine-rich repeat-containing G protein-coupled receptor 439644738596550006Rat
2202Bdnfbrain-derived neurotrophic factor39616504296215621Rat
619756Bbox1gamma-butyrobetaine hydroxylase 139682265496871786Rat
621164Lin7clin-7 homolog C, crumbs cell polarity complex component39640682596414137Rat
1305045Emc7ER membrane protein complex subunit 739926393399274365Rat
1306349Fmn1formin 13100101103100485652Rat
1310006Dph6diphthamine biosynthesis 63101307229101437463Rat
1333904Olr771olfactory receptor 77139825489098255834Rat
1332772Olr790olfactory receptor 79039880426898805206Rat
1333829Olr775olfactory receptor 77539843624298437180Rat
1333291Olr762-psolfactory receptor pseudogene 76239808702098087956Rat
1333641Olr795olfactory receptor 79539895608198957019Rat
1333499Olr779olfactory receptor 77939852074998521687Rat
1333654Olr763olfactory receptor 76339809690698101076Rat
1333335Olr776olfactory receptor 77639845888998459827Rat
1333521Olr760olfactory receptor 76039806802498068962Rat
1333491Olr792olfactory receptor 79239886885598869805Rat
1333867Olr782olfactory receptor 78239855666798566115Rat
1333067Olr788olfactory receptor 78839869389398694831Rat
1333136Olr749olfactory receptor 74939786790297868840Rat
1333925Olr764-psolfactory receptor pseudogene 76439810532598106262Rat
1334162Olr774olfactory receptor 77439838881598394276Rat
1309783Ankrd30aankyrin repeat domain 30A39764125897826965Rat
1333588Olr780olfactory receptor 78039853347698534414Rat
1333951Olr796olfactory receptor 79639897573098976665Rat
1332602Olr789olfactory receptor 78939873897898739910Rat
1334047Olr768olfactory receptor 76839819646698197404Rat
1333326Olr784olfactory receptor 78439861003198610969Rat
1333526Olr769olfactory receptor 76939822052098221458Rat
1332807Olr770olfactory receptor 77039823669298237630Rat
1333604Olr750olfactory receptor 75039788026197881172Rat
1332850Olr773olfactory receptor 77339834126098342198Rat
1332626Olr767olfactory receptor 76739816793598168873Rat
1332749Olr756olfactory receptor 75639801633898017255Rat
1311652Slc5a12solute carrier family 5 member 1239717932697228405Rat
1310905Emc4ER membrane protein complex subunit 439916971199174730Rat
1309928Avenapoptosis and caspase activation inhibitor39929900999431635Rat
1333980Olr753olfactory receptor 75339794998297950899Rat
1306223Aqraquarius intron-binding spliceosomal factor3100874987100945026Rat
1309107Arhgap11aRho GTPase activating protein 11A3100590865100607146Rat
1332860Olr772olfactory receptor 77239831899998319937Rat
1332868Olr785olfactory receptor 78539861710398618065Rat
1308873Ano3anoctamin 339723567197550090Rat
1334334Olr757olfactory receptor 75739802668798027622Rat
1333786Olr787-psolfactory receptor pseudogene 78739865753598658502Rat
1563711Fibinfin bud initiation factor homolog39694240596944676Rat
1560583Ccdc34coiled-coil domain containing 3439655299296588303Rat
1566059RGD1566059similar to olfactory receptor Olfr128939807644098080996Rat
1561276RGD1561276similar to olfactory receptor Olfr128939805806198061955Rat
1332734Olr783olfactory receptor 78339859580298596740Rat
1334249Olr786olfactory receptor 78639864183798642772Rat
1334032Olr765olfactory receptor 76539811874498121011Rat
1334011Olr777olfactory receptor 77739848289598483833Rat
1311177Lpcat4lysophosphatidylcholine acyltransferase 439904472999052963Rat
1333795Olr766olfactory receptor 76639813755298138490Rat
2359Grem1gremlin 1, DAN family BMP antagonist3100512317100524001Rat
1311335Slc12a6solute carrier family 12, member 639907157799170266Rat
1334118Olr755-psolfactory receptor pseudogene 75539798488997985362Rat
1334408Olr781olfactory receptor 78139854460298545564Rat
1332919Olr747olfactory receptor 74739782819497829132Rat
1333545Olr754olfactory receptor 75439797611097977027Rat
1334379Olr748olfactory receptor 74839785359197854529Rat
1334294Olr791olfactory receptor 79139883942998840367Rat
1333821Olr778olfactory receptor 77839850331798505239Rat
1333744Olr752olfactory receptor 75239792584997926781Rat
1332896Olr794-psolfactory receptor pseudogene 79439893305398933777Rat
1332964Olr758olfactory receptor 75839805524198056179Rat
1585049LOC691368similar to olfactory receptor 127839790652897908248Rat
1585105LOC691309similar to solute carrier family 25, member 539665614596657368Rat
1582771Katnbl1katanin regulatory subunit B1 like 139918374899225789Rat
1587382LOC296027similar to glyceraldehyde-3-phosphate dehydrogenase39834580998346810Rat
1562507RGD1562507similar to ribosomal protein S839799909497999712Rat
1582780Nop10NOP10 ribonucleoprotein39906685799067942Rat
1564529Nutm1NUT midline carcinoma, family member 139905351099064311Rat
1561237Tmco5btransmembrane and coiled-coil domains 5B3100055744100083303Rat
1588523LOC364803similar to sorbitol dehydrogenase 13100487786100491340Rat
1589864Muc15mucin 15, cell surface associated39729472897308641Rat
1597283Zfp770zinc finger protein 7703100963430100971215Rat
1588370LOC502660similar to olfactory receptor 131839891296298913924Rat
2322993LOC100363452ribosomal protein S8-like39858610998586784Rat
2323045LOC100363400hypothetical LOC10036340039849921098499603Rat
2323648Hmgn4high mobility group nucleosomal binding domain 439999074399991093Rat
2323669LOC100359525PRELI domain containing 1-like39901965499024330Rat
2323858LOC100359435cleavage stimulation factor, 3 pre-RNA, subunit 3 (predicted)-like39901004299010499Rat
6487743LOC10091232260S ribosomal protein L19-like39731648097318945Rat
6497450LOC100910676uncharacterized LOC1009106763100815275100828459Rat
7631560LOC102553315ribosome biogenesis protein WDR12-like3100073403100074186Rat
7578806LOC102551301proteasome subunit beta type-3-like39938989899390509Rat
7684934LOC10255119760S ribosomal protein L19-like39918359799198224Rat
7718425LOC102552721uncharacterized LOC1025527213101344132101516024Rat
9106594LOC103691857prohibitin-2 pseudogene39744309897444431Rat
9277103LOC103691860uncharacterized LOC1036918603100607628100667327Rat
11448890LOC10835060640S ribosomal protein S28 pseudogene39843050798430716Rat
11436885LOC108350585uncharacterized LOC10835058539968916699690876Rat
11378386LOC10835058460S ribosomal protein L30-like39940726199408870Rat
41380011LOC120101629uncharacterized LOC1201016293101212971101241464Rat
41355606LOC120102069small nucleolar RNA SNORA1739846812998468259Rat
41126259LOC120102095small nucleolar RNA SNORA1139930499799305125Rat
41229593LOC120101622uncharacterized LOC12010162239683402496859796Rat
41272986LOC120102042small nucleolar RNA SNORA173102077660102077791Rat
41274074LOC120101454uncharacterized LOC12010145439998760999989479Rat
41015933LOC120101626uncharacterized LOC1201016263100090853100100922Rat
40974503LOC120102033small nucleolar RNA SNORA4839995498199955113Rat
40976983LOC120101913uncharacterized LOC12010191339955234199560547Rat
40957643LOC120101621uncharacterized LOC12010162139655833696598221Rat
41003152LOC120101623uncharacterized LOC12010162339695430096963861Rat
40985119LOC120101624uncharacterized LOC12010162439907135499071841Rat
40934550LOC120101627uncharacterized LOC1201016273100617550100632222Rat
40935329LOC120101630uncharacterized LOC1201016303101358643101359777Rat
40960957LOC120101625mRNA turnover protein 4 homolog3100458801100476903Rat
41007664LOC12010168960S ribosomal protein L13-like3100799245100799880Rat
40939342LOC120102063small nucleolar RNA SNORA1739849302998493156Rat
40939791LOC120101688lys-63-specific deubiquitinase BRCC36-like39882057498821258Rat
41053904LOC120101628uncharacterized LOC1201016283100775166100787590Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10233D3Arb1119639621091396211109Ratregion
10234D3Mgh2813939621095996211098Ratregion
33826D3Mit69539613869996138794Ratregion
34228D3Mgh513139853525598535386Ratregion
37040D3Rat231763102019030102019204Ratregion
37156D3Rat7020039778296497783166Ratregion
35799D3Rat2414439755141797551561Ratregion
38328D3Rat8119439612781796128025Ratregion
38328D3Rat8119439612781796128013Ratregion
38868D3Rat7320839978391199784115Ratregion
42297D3Rat29012239641123496411356Ratregion
42298D3Rat28722239983681099837028Ratregion
42299D3Rat2842063100068197100068403Ratregion
41230D3Rat16716839853526098535427Ratregion
41296D3Rat1661743102200529102200699Ratregion
43656D3Got5415139768292297683370Ratregion
43656D3Got5415139768292297683077Ratregion
43657D3Got5213939693336196933500Ratregion
43658D3Got5115039967830699678454Ratregion
43663D3Got602323101856316101856548Ratregion
43669D3Got582083101588712101588920Ratregion
43671D3Got592263100790750100790976Ratregion
60397D3Got5317639856298198563157Ratregion
625804D3Got5520539930013999300344Ratregion
66510D3Mco3320039729816597298391Ratregion
728015D3Chm7823439641914596419368Ratregion
1628026D3Got24716039669877996698937Ratregion
2290563D3Tkyo71783100769917100770095Ratregion
7205946Bdnf22239621223696212458Ratregion
7206018Olfr127758139788031697880897Ratregion
7206020Olfr131061039859591198596521Ratregion
7206436Chrm591939928537599286294Ratregion
7206656Grem11033100515669100515772Ratregion
5039214RH12757720039916984799170047Ratregion
5039262RH12760518339722887297229055Ratregion
5039094RH127509039694251396942700Ratregion
5037223BB391717893100771612100771701Ratregion
5026224RH13139018039922545099225630Ratregion
5026310RH13172120539722656897226773Ratregion
5029369RH14453523839995053799950775Ratregion
5035358BE11442816939907349199073660Ratregion
5027227AI30369814739641739896417545Ratregion
5034994Bdnf41739621219196212608Ratregion
5030743BE1078751793100869709100869888Ratregion
5057790BE10154815439621383296213987Ratregion
5057974BE10179815839969098199691139Ratregion
5052243D3821815439943222299432376Ratregion
5059880BF4000601153100905748100905863Ratregion
5050082RH1338522093100804301100804510Ratregion
7193130BDNF61539621198996212604Ratregion
5051336AW4958461173100875213100875330Ratregion
5040760RH12846818039654935596549535Ratregion
5044312RH13053018239658732796587509Ratregion
5043762RH13021218939881597898816168Ratregion
5045204RH13104420439682267696822880Ratregion
5048942RH13319518139938650299386683Ratregion
5042884RH129702039907515999075368Ratregion
5041314RH12878618439641731196417497Ratregion
5075132RH1384171253100966525100966650Ratregion
5077628RH13986518939655174396551932Ratregion
5075732RH1387641253100828282100828407Ratregion
5078280RH1402482163101307416101307632Ratregion
5072880RH1371081513100875023100875174Ratregion
5074644RH13813515139955994699560097Ratregion
5068222AU04727619139851926798519460Ratregion
5070051RH944401583100544122100544280Ratregion
5062592BE10690019839641611996416317Ratregion
5060154AI07249618839943181499432002Ratregion
5063870BE12011915439943629999436452Ratregion
5062876BI2953471173100826368100826485Ratregion
5061210AW52678616539977181899771983Ratregion
5084372AI17003815739682292396823080Ratregion
5085309AI70954218139927399699274177Ratregion
5089085AU04894519139624342396243614Ratregion
5082721BG3739201703100811733100811903Ratregion
5081050RH14193619039723703197237221Ratregion
5503564UniSTS:4639618239621222396212305Ratregion
5503766STS_ADH22753100812851100813988Ratregion
5503913Ryr393539944033399441268Ratregion
5504708PMC61174P123039928576399285993Ratregion
5504971Aven146339943015099431613Ratregion
5505590UniSTS:48509793939865756398658502Ratregion
5499749UniSTS:23447918839658757296587760Ratregion
5500769stSG61295503100710273100711942Ratregion
5500653RH13648223339641739696417629Ratregion
5502847Arhgap11a03100592355100593105Ratregion
Position Markers

Flank 1: (D3Rat81)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2396,127,817 - 96,128,013 (+)MAPPER
mRatBN7.2396,127,817 - 96,128,025 (+)MAPPER
Rnor_6.03100,730,984 - 100,731,355NCBI
Rnor_6.03100,730,984 - 100,731,177NCBI
Rnor_5.03107,333,676 - 107,333,869UniSTS
Rnor_5.03107,333,676 - 107,334,047UniSTS
Celera395,154,099 - 95,154,292UniSTS
RH 3.4 Map3748.5RGD
RH 3.4 Map3748.5UniSTS
RH 2.0 Map3481.5RGD
SHRSP x BN Map348.4098RGD
FHH x ACI Map353.96RGD
Peak: (D3Rat81)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2396,127,817 - 96,128,013 (+)MAPPER
mRatBN7.2396,127,817 - 96,128,025 (+)MAPPER
Rnor_6.03100,730,984 - 100,731,355NCBI
Rnor_6.03100,730,984 - 100,731,177NCBI
Rnor_5.03107,333,676 - 107,333,869UniSTS
Rnor_5.03107,333,676 - 107,334,047UniSTS
Celera395,154,099 - 95,154,292UniSTS
RH 3.4 Map3748.5RGD
RH 3.4 Map3748.5UniSTS
RH 2.0 Map3481.5RGD
SHRSP x BN Map348.4098RGD
FHH x ACI Map353.96RGD
Flank 2: (D3Rat166)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23102,200,529 - 102,200,699 (+)MAPPER
Rnor_6.03106,900,427 - 106,900,596NCBI
Rnor_5.03113,470,189 - 113,470,358UniSTS
RGSC_v3.43101,359,810 - 101,359,980RGD
RGSC_v3.43101,359,811 - 101,359,980UniSTS
RGSC_v3.13101,256,089 - 101,256,444RGD
Celera3101,146,403 - 101,146,574UniSTS
SHRSP x BN Map350.6598RGD
SHRSP x BN Map350.6598UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1582252Sual1Serum uric acid level QTL 13.40.0123blood uric acid amount (VT:0010302)blood uric acid level (CMO:0000501)396127817102200699Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_statistics_details specific pairs of variables were compared by one or two way ANOVA with post hoc Tukey's honest significance difference test 1580752