Pur15 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Pur15 (Proteinuria QTL 15) Rattus norvegicus

Symbol: Pur15
Name: Proteinuria QTL 15
RGD ID: 1581577
Previously known as: SUP20
Trait: urine total protein amount   (VT:0000032)    
Measurement Type: urine protein excretion rate   (CMO:0000759)    
LOD Score: 4.38
P Value: 2.0E-4
Variance: 23.6
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2208,042,410 - 17,617,956RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0208,654,341 - 18,872,273RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02010,844,023 - 21,025,734RGDRnor5.0
RGSC_v3.4208,286,533 - 18,411,969RGDRGSC3.4
RGSC_v3.1208,286,761 - 18,426,179RGD
Cross Type: Not Available
Strains Crossed: SBH/Ygl SBN/Ygl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
urine protein excretion rate  IDA 1578625 RGD 

Experimental Condition
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
right nephrectomy  IDA 1578625 RGD 

Measurement Method
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
protein analysis by liquid phase colorimetry with spectrophotometric readout  IDA 1578625 RGD 

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SBH/Ygl  IEA 1578625 RGD 
SBN/Ygl  IEA 1578625 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
urine total protein amount  IDA 1578625 RGD 

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
SBH/Ygl  (IEA)
SBN/Ygl  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic dissection of proteinuria in the Sabra rat. Yagil C, etal., Physiol Genomics. 2006 Mar 13;25(1):121-33. Epub 2006 Jan 3.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3695Slc19a1solute carrier family 19 member 1201158441011602429Rat
619986Dnah8dynein, axonemal, heavy chain 82086929398946780Rat
2765Gstt1glutathione S-transferase theta 1201285661312873586Rat
3311Pfklphosphofructokinase, liver type201066428510686324Rat
70915Ftcdformimidoyltransferase cyclodeaminase201205520312068717Rat
2413Cryaacrystallin, alpha A2097836059787351Rat
3099Mmp11matrix metallopeptidase 11201273084612739629Rat
2683Ggt1gamma-glutamyltransferase 1201307469513104095Rat
2684Ggt5gamma-glutamyltransferase 5201304325513071523Rat
2702Glo1glyoxalase 12086636178681661Rat
2033Adarb1adenosine deaminase, RNA-specific, B1201122256911350854Rat
3847Tff3trefoil factor 32091932599197969Rat
621020Ndufv3NADH:ubiquinone oxidoreductase subunit V32096124629621622Rat
2703Glp1rglucagon-like peptide 1 receptor2089720049010241Rat
621163Mifmacrophage migration inhibitory factor201279091912791784Rat
2435Cstbcystatin B201024546210247505Rat
620709Tff2trefoil factor 22092157509219619Rat
61923DdtD-dopachrome tautomerase201288421612886687Rat
628861Lrrc3leucine rich repeat containing 3201075891910763736Rat
628671ZwintZW10 interacting kinetochore protein201593815715953997Rat
620954Ipmkinositol polyphosphate multikinase201721698817251675Rat
620955Lsslanosterol synthase201209113812118858Rat
69407Sik1salt-inducible kinase 12099494079959036Rat
621324Pdxkpyridoxal kinase201021039310231937Rat
1303239Dnmt3lDNA methyltransferase 3 like201061493310629516Rat
1304860Ube2g2ubiquitin-conjugating enzyme E2G 2201098373411005468Rat
620091Upb1beta-ureidopropionase 1201321725213243590Rat
3615S100bS100 calcium binding protein B201237286612381619Rat
620707Tff1trefoil factor 12092357369239597Rat
621035Pde9aphosphodiesterase 9A2094698099562949Rat
1306834Mcm3apminichromosome maintenance complex component 3 associated protein201212757012165165Rat
620263Cabin1calcineurin binding protein 1201289331413015357Rat
69362Gstt2glutathione S-transferase theta 2201281961712823288Rat
70936Col18a1collagen type XVIII alpha 1 chain201147410411582593Rat
620294Abcg1ATP binding cassette subfamily G member 12091266879182948Rat
1305003Pknox1PBX/knotted 1 homeobox 12096628669705030Rat
2717GnazG protein subunit alpha z201364347313694240Rat
1305581Itgb2integrin subunit beta 2201106139411097656Rat
1307459Bicc1BicC family RNA binding protein 1201744964417686775Rat
1305633Rrp1bribosomal RNA processing 1B201012311110148704Rat
1305585Col6a2collagen type VI alpha 2 chain201202167612049425Rat
1306923Slc5a4solute carrier family 5 member 4201247564412518738Rat
2287Cbscystathionine beta synthase2097080899732623Rat
1307334Pofut2protein O-fucosyltransferase 2201136707311377788Rat
2049Adora2aadenosine A2a receptor201331584813333386Rat
620682Tfamtranscription factor A, mitochondrial201735624317368293Rat
1306807Vpreb3V-set pre-B cell surrogate light chain 3201271747512718785Rat
1307430Pcbp3poly(rC) binding protein 3201167821811878210Rat
1305601Rsph14radial spoke head 14 homolog201362747513703447Rat
1307286Rrp1ribosomal RNA processing 1201026089210272141Rat
1311139Aireautoimmune regulator201063605810651060Rat
1311889Trpm2transient receptor potential cation channel, subfamily M, member 2201070356810753189Rat
1308595Susd2sushi domain containing 2201301746813024903Rat
1308722YbeyybeY metalloendoribonuclease201216519212174713Rat
1307886Ube2d1ubiquitin-conjugating enzyme E2D 1201730931517343770Rat
1305787Agpat31-acylglycerol-3-phosphate O-acyltransferase 3201033096010415358Rat
1307993BcrBCR activator of RhoGEF and GTPase201347167913596497Rat
1308587Slc37a1solute carrier family 37 member 12093605019433895Rat
1308761Smarcb1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1201274116412763616Rat
1306975Btbd9BTB domain containing 92082863378645567Rat
1310305Ubash3aubiquitin associated and SH3 domain containing, A2092914719334685Rat
1309867Slc5a4bsolute carrier family 5 (neutral amino acid transporters, system A), member 4b201255954512609133Rat
1307712Rsph1radial spoke head component 12093419109360640Rat
1309570Specc1lsperm antigen with calponin homology and coiled-coil domains 1-like201333798313443665Rat
1307113Zfand3zinc finger AN1-type containing 32080834078279617Rat
1305983Pttg1ipPTTG1 interacting protein201103001311047742Rat
1309594Cfap410cilia and flagella associated protein 410201068786310694736Rat
1309529Cisd1CDGSH iron sulfur domain 1201725530217268688Rat
1310135Tmprss3transmembrane serine protease 32092541029273808Rat
1565398Col6a1collagen type VI alpha 1 chain201190610511924599Rat
1561557RGD1561557similar to chromosome 21 open reading frame 29201082417710825590Rat
1566039Umodl1uromodulin-like 12090277519087133Rat
1562732Gstt3glutathione S-transferase, theta 3201287485412882640Rat
1566085RGD1566085similar to pyridoxal (pyridoxine, vitamin B6) kinase201016293410192610Rat
1303003Gatd3aglutamine amidotransferase class 1 domain containing 3A201051479310522894Rat
1561022Sumo3small ubiquitin-like modifier 3201101014011020850Rat
1564162RGD1564162similar to Homo sapiens fetal lung specific expression unknown201272173812725864Rat
1311263Trappc10trafficking protein particle complex subunit 10201043873710499074Rat
1311257Slx9SLX9 ribosome biogenesis factor201111463211147532Rat
1563815RGD1563815similar to sodium-glucose cotransporter-like 1201266438812713968Rat
1564149RGD1564149similar to Protein C21orf58201216727912188665Rat
1359417Chchd10coiled-coil-helix-coiled-coil-helix domain containing 10201272583912727638Rat
1560350Psma6-ps1proteasome 20S subunit alpha 6, pseudogene 1201682368416824632Rat
1565519Prmt2protein arginine methyltransferase 2201239474812420643Rat
1582897Dip2adisco-interacting protein 2 homolog A201228456612371068Rat
1583076Krtap10-1keratin associated protein 10-1201088052410881445Rat
1559903RGD1559903similar to RIKEN cDNA 1700049L16201662535416626151Rat
1562578Spatc1lspermatogenesis and centriole associated 1-like201207404012083873Rat
1562791Icoslginducible T-cell co-stimulator ligand201060042010610718Rat
1582817Pwp2PWP2, small subunit processome component201049933210512965Rat
1565879Hsf2bpheat shock transcription factor 2 binding protein201003556210123059Rat
1563108Tspearthrombospondin-type laminin G domain and EAR repeats201077180610837419Rat
1584190U2af1U2 small nuclear RNA auxiliary factor 12097429049753840Rat
1593740LOC686720similar to keratin associated protein 10-10201087199110872927Rat
1586373LOC689927similar to keratin associated protein 10-10201080719210808250Rat
1590969Pcdh15protocadherin related 15201399709415496446Rat
1561987Rpl9-ps20ribosomal protein L9, pseudogene 20201375129413753402Rat
1585179Wdr4WD repeat domain 42095872059611434Rat
1589811Nqo2-ps1N-ribosyldihydronicotinamide:quinone reductase 2, pseudogene 1201697436816975074Rat
1565460Zfp280bzinc finger protein 280B201262710112641943Rat
1590986Polr3d-ps1polymerase (RNA) III (DNA directed) polypeptide D, pseudogene 1201386247613864567Rat
1597373Derl3derlin 3201275449012768454Rat
1596076LOC690431similar to keratin associated protein 10-7201085495110864402Rat
1596091LOC690415hypothetical protein LOC690415201084511010846261Rat
1596098Rab36RAB36, member RAS oncogene family201360670013624304Rat
1591294Gstt4glutathione S-transferase, theta 4201283517812842306Rat
1596048LOC690460similar to keratin associated protein 10-7201088858810896525Rat
1594734Nme2-ps1NME/NM23 nucleoside diphosphate kinase 2, pseudogene 1201117937211179973Rat
1597573Snrpd3small nuclear ribonucleoprotein D3 polypeptide201313011213145947Rat
1597571Gucd1guanylyl cyclase domain containing 1201314561713156330Rat
1596032Krtap10-9keratin associated protein 10-9201093960910940526Rat
1597306Krtap10-3lkeratin associated protein 10-3 like201081476510815298Rat
1595865Pcntpericentrin201219059712278723Rat
2319709Krtap12-4keratin associated protein 12-4201091020310911281Rat
2319746Krtap12-2keratin associated protein 12-2201090425710904751Rat
2318639LOC100365646hypothetical protein LOC100365646201079935510800354Rat
2319481Krtap12-1keratin associated protein 12-1201091757810917910Rat
2319535LOC100361739keratin associated protein 12-1-like201092761010928572Rat
2319572LOC100361702keratin associated protein 12-1-like201092099610923851Rat
2318441Lrrc75bleucine rich repeat containing 75B201310030213106503Rat
2322906Mtfr1-ps2mitochondrial fission regulator 1, pseudogene 2201692643216929929Rat
2321795Pkm-ps20pyruvate kinase M1/2, pseudogene 20201687865516880885Rat
2325469Mir678microRNA 678201242045812420540Rat
6488401LOC100912209uncharacterized LOC100912209201160921911615721Rat
6501785Eif3i-ps4eukaryotic translation initiation factor 3, subunit I, pseudogene 42088488258851018Rat
7489019Mir327microRNA 327201316164013161733Rat
7615076LOC102556116uncharacterized LOC102556116201299073212994638Rat
7570468LOC102548069uncharacterized LOC1025480692086443108649170Rat
7572815LOC102548205uncharacterized LOC102548205201740525817408569Rat
7600967LOC102546553uncharacterized LOC102546553201163062511642277Rat
7579095LOC102556392uncharacterized LOC102556392201316913813215233Rat
7549651LOC102556333uncharacterized LOC102556333201321043213225548Rat
7583376LOC102552984uncharacterized LOC102552984201271512212720114Rat
7587909LOC102547881uncharacterized LOC102547881201717178817178143Rat
7752662Ahcy-ps1adenosylhomocysteinase, pseudogene 1201166914311670833Rat
7685928LOC102556115uncharacterized LOC102556115201138351811389211Rat
9151994LOC103694394uncharacterized LOC1036943942095843189587414Rat
9108964LOC103694428single-stranded DNA-binding protein, mitochondrial pseudogene201710992017113186Rat
9200139LOC10369033160S ribosomal protein L13 pseudogene201264836512652576Rat
9200697LOC10369440460S ribosomal protein L39201725386217254227Rat
9307255LOC103694398keratin-associated protein 10-1-like201093355810934430Rat
9279284LOC103694395uncharacterized LOC1036943952098420979846059Rat
9264061LOC10369439340S ribosomal protein S12 pseudogene2087673058768818Rat
11360274LOC108353238translation initiation factor IF-2-like201033067610331422Rat
11442616LOC108349009uncharacterized LOC108349009201456775514586143Rat
11465285LOC108349052uncharacterized LOC108349052201707343617078563Rat
11451238LOC108349051uncharacterized LOC108349051201595283115978666Rat
11371075LOC108349047uncharacterized LOC1083490472099591549968781Rat
11419125LOC10835342440S ribosomal protein S28 pseudogene201282545512825905Rat
11485860LOC108353250uncharacterized LOC108353250201393765413963003Rat
41087994LOC120099070small nucleolar RNA SNORA442092480429248157Rat
41140301LOC120098853uncharacterized LOC120098853201031509410315845Rat
41249362Atp5mf-ps5ATP synthase membrane subunit f, pseudogene 5201336675513366987Rat
41283369LOC120099063Z6 small nucleolar RNA201074839010748486Rat
41283550Trnap-agg81transfer RNA proline (anticodon AGG) 81201104797111048051Rat
41114369LOC120099032U2 spliceosomal RNA201260852512608723Rat
41206442LOC120099053U6 spliceosomal RNA201304479413044892Rat
41279118LOC120099045U6 spliceosomal RNA201238856412388669Rat
41142660LOC120099012uncharacterized LOC120099012201108759411091193Rat
41172408Trnas-aga15transfer RNA serine (anticodon AGA) 15201733335317333433Rat
41360668LOC120099044U6 spliceosomal RNA201090206910902172Rat
41118814LOC120098982uncharacterized LOC1200989822088138188815102Rat
41174939LOC120098845uncharacterized LOC120098845201429165414303622Rat
41260590Trnaa-agc95transfer RNA alanine (anticodon AGC) 95201443993414440006Rat
41364196LOC120098888uncharacterized LOC120098888201379149813819942Rat
41190272LOC120098894uncharacterized LOC120098894201141248411430593Rat
41264805Snrpg-ps3small nuclear ribonucleoprotein polypeptide G, pseudogene 3201099038410993840Rat
41343373LOC120098854keratin-associated protein 10-1-like201083507910835882Rat
41366610LOC120099065Z6 small nucleolar RNA201074955410749629Rat
41154350LOC120098983uncharacterized LOC1200989832088289418832801Rat
41191257Trnat-agu26transfer RNA threonine (anticodon AGU) 26201144553011445610Rat
41345822LOC120098916uncharacterized LOC1200989162094601449466526Rat
41395705LOC120099019small nucleolar RNA SNORA17201609633516096464Rat
41182832Trnap-agg62transfer RNA proline (anticodon AGG) 62201468853814688620Rat
41127234LOC120099069small nucleolar RNA SNORA44201118508211185194Rat
41270226LOC120098851uncharacterized LOC1200988512099740729987401Rat
41197327LOC120099024small nucleolar RNA SNORA17201671870216718825Rat
41080828LOC120098922uncharacterized LOC120098922201195121711954976Rat
41131172LOC120098852uncharacterized LOC120098852201000515610006928Rat
41164042LOC120098952uncharacterized LOC1200989522080822068083106Rat
40953122LOC12009899128S ribosomal protein S36, mitochondrial-like201094918110949634Rat
40978725LOC120098869uncharacterized LOC120098869201337142113374594Rat
40982220LOC120098951uncharacterized LOC1200989512084279888432988Rat
40931161LOC120098980uncharacterized LOC1200989802093712639373758Rat
40933832LOC120099076small nucleolar RNA SNORA482090993829099524Rat
41004807Trnaa-agc36transfer RNA alanine (anticodon AGC) 36201135915111359231Rat
40937272LOC120098976uncharacterized LOC120098976201309450713097110Rat
40963043LOC120098862uncharacterized LOC120098862201667101116764388Rat
41010448Micos10-ps1mitochondrial contact site and cristae organizing system subunit 10, pseudogene 1201727782717278310Rat
40965924LOC120098899uncharacterized LOC120098899201325881313266311Rat
41244384LOC120098958uncharacterized LOC120098958201147453511482506Rat
41029094LOC120098844uncharacterized LOC120098844201404711514064186Rat
41054945Pin4-ps5peptidylprolyl cis/trans isomerase, NIMA-interacting 4, pseudogene 5201150081111501472Rat
41220558LOC120098915uncharacterized LOC1200989152090929849096813Rat
41223599LOC120098835uncharacterized LOC1200988352092888149292762Rat
41225578LOC120098855keratin-associated protein 10-11-like201084091410841681Rat
41301513LOC120098928uncharacterized LOC120098928201118200411186697Rat
41067580LOC120099051U6 spliceosomal RNA2088506188850719Rat
41074342LOC120099066small nucleolar RNA SNORA36 family2096282379628367Rat
41074407LOC120098846uncharacterized LOC120098846201406762614092195Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10654D20Wox72692090086529008921Ratregion
34260D20Mgh51182090397199039825Ratregion
33563D20Mit5247201748945817489705Ratregion
36382D20Mgh7146201078849410788640Ratregion
35477D20Rat4168201173083011731000Ratregion
37632D20Rat491282080424108042534Ratregion
37872D20Rat31225201007869610078919Ratregion
34908D20Rat21482092434299243559Ratregion
35657D20Rat5124201761783217617956Ratregion
38436D20Rat33200201355203613552235Ratregion
40318D20Rat60158201410089414101050Ratregion
39522D20Rat59105201068941210689517Ratregion
43144D20Rat67233201065039610650628Ratregion
43145D20Rat75200201623329916233511Ratregion
45672D20Got62432090009049001147Ratregion
45673D20Rat74219201007869610078911Ratregion
45675D20Got10181201065014410650325Ratregion
45676D20Got13183201346159213461775Ratregion
45677D20Got12258201278430712784565Ratregion
45678D20Got15264201411410214114361Ratregion
45679D20Got14226201404151714041743Ratregion
45680D20Got7208201584200315842211Ratregion
45681D20Got19288201677176816772053Ratregion
45682D20Got11133201722419417224327Ratregion
66649D20Mco1145201267622812676372Ratregion
1576380D20Ztm3300201095274010953040Ratregion
1630813D20Got112282201678152616781809Ratregion
1630863D20Wox22166201369806313698229Ratregion
1632408D20Wox21237201281900412819241Ratregion
1628805D20Got122106201199811211998218Ratregion
1629946D20Wox6145201237404612374191Ratregion
1630026D20Got8213201677176816771981Ratregion
1633063D20Uwm4198201226708612267284Ratregion
1633902D20Wox9223201309282013093043Ratregion
7205992UniSTS:531308139201190632211907228Ratregion
7206296Gtf2h5652095159399516043Ratregion
5038638BE553943122201373696813737090Ratregion
5036318Glp1r1972090086249008821Ratregion
5039310RH127633200201593843215938632Ratregion
5031550AU0479602592080607018060960Ratregion
5034652BF390741166201298402712984193Ratregion
5029267RH144147152201271749612717648Ratregion
5032295AW061257117201041445210414569Ratregion
5034858AI1694702032095626739562876Ratregion
5034930AI4115111002091932789193378Ratregion
5027403AI19502390201321731713217407Ratregion
5027405AI267078203201272587012726219Ratregion
5032741RH135130197201014291310143110Ratregion
5025076AW742733256201094443010944686Ratregion
5027751RH9459890201068616010686250Ratregion
5030509BF403456160201717405217174212Ratregion
5030685BF398822182201217119212171374Ratregion
5028073U32469192201158477311584965Ratregion
5030777AW535227193201288734212887535Ratregion
5030823BE1204191832086592568659439Ratregion
5025744RH129493191201192437711924568Ratregion
5028368D10Jhu60271201143239311432664Ratregion
5025790RH129672199201158237611582575Ratregion
5025918RH1301992012086628338663034Ratregion
5031049BE115058157201204723712047394Ratregion
5051871RH94706180201237332412373504Ratregion
5055963RH144104176201399722013997396Ratregion
5056265RH144278184201426565314265837Ratregion
5051585AW5506431382086630208663158Ratregion
5051721RH94619972097871949787291Ratregion
5056583RH144462137201364358513643722Ratregion
5051997RH947802322090089069009139Ratregion
5059412AW530645183201216538312165566Ratregion
5054955RH143522128201037613710376265Ratregion
5057910BI283857150201103048811030638Ratregion
5058634BE102216179201353858113538760Ratregion
5058638BE102222181201726924617269427Ratregion
5058066BF386530183201614325216143435Ratregion
5058950BF387291167201090565410905821Ratregion
5058960BE102618159201096897110969130Ratregion
5059004BF387311159201234515212345311Ratregion
5059966BF388249168201134746811347636Ratregion
5052285MDB0447102201135066511350767Ratregion
5059060BE102779156201350620813506364Ratregion
5050390RH134029192201027194610272138Ratregion
5053271RH142552281201461046614610747Ratregion
5059238BI278745131201002318510023316Ratregion
7192158Gabrb1438201050282010503258Ratregion
5050088RH1338551852086639158664100Ratregion
5052869RH142321157201288643112886588Ratregion
5051258RH134530212201136717311367572Ratregion
5053127RH142469107201101282911012936Ratregion
5043942RH130319180201060495710605137Ratregion
5044126RH130425203201068603610686240Ratregion
5044154RH130441204201736791217368116Ratregion
5040680RH128422181201023718610237367Ratregion
5044748RH130781216201060054310600761Ratregion
5044758RH130787217201734350517343721Ratregion
5043766RH130215207201282305912823266Ratregion
5045542RH131237217201321728113217498Ratregion
5045744RH131354205201135059911350804Ratregion
5045886RH131435193201721752717217720Ratregion
5041768RH1290472112094335999433810Ratregion
5041774RH129051201201192431111924512Ratregion
5041866RH129104184201187800311878187Ratregion
5044692RH130749186201287337812873564Ratregion
5044824RH130824197201041449710414694Ratregion
5046316RH131682181201346934213469523Ratregion
5047764RH132515218201333995013340167Ratregion
5047778RH132523188201310975213109940Ratregion
5047914RH132601189201100942011009609Ratregion
5048144RH132733152201400079314000945Ratregion
5039464RH127720181201014844310148624Ratregion
5042252RH129327199201052261910522818Ratregion
5039812RH127921207201098376410983969Ratregion
5039934RH127992195201204919612049391Ratregion
5042580RH129520201201593837615938577Ratregion
5040214RH128155193201288232212882515Ratregion
5042124RH129254170201331586013316030Ratregion
5043234RH129909215201721717917217394Ratregion
5042524RH1294861842096214209621604Ratregion
5042524RH1294861842096214209621604Ratregion
5040068RH128071203201301504413015247Ratregion
5042856RH129685178201137611911376297Ratregion
5043116RH129841163201158444211584605Ratregion
5043198RH1298881972096213939621570Ratregion
5075798RH138803164201024116710241331Ratregion
5075828RH1388201922086784638678655Ratregion
5072310RH1367752292082863818286610Ratregion
5075548RH1386571672090099519010118Ratregion
5075904RH138864120201272127412721394Ratregion
5072582RH136932182201239582112396234Ratregion
5076770RH139368118201068855910688677Ratregion
5080620RH141685217201323047413230691Ratregion
5077124RH139575197201734200317342200Ratregion
5075934RH138882147201216314212163289Ratregion
5079476RH1410201832091827539182936Ratregion
5076800RH139385111201740531417405425Ratregion
5078044RH140110180201237041612370596Ratregion
5076406RH1391571202096181679618287Ratregion
5077880RH140013218201028031510280533Ratregion
5078712RH140507173201734192317342096Ratregion
5078268RH140241168201204924912049417Ratregion
5080134RH141403202201727161917271821Ratregion
5078384RH140311186201333829813338484Ratregion
5070768RH1346932032099475869947792Ratregion
5070794RH134709185201075296310753149Ratregion
5070810RH134718193201209133912091532Ratregion
5073234RH137318182201227843912278621Ratregion
5078706RH140502126201209291412093040Ratregion
5073032RH1371952172095874429587654Ratregion
5071620RH135187195201157523711575432Ratregion
5074066RH137799135201075526510755581Ratregion
5073236RH137319163201302763413027797Ratregion
5073544RH137498214201157408811574302Ratregion
5074522RH138065173201362135013621523Ratregion
5061758AW533203134201041273810412872Ratregion
5063388BF398844174201161170711611881Ratregion
5067038AU048002209201484819114848400Ratregion
5068348AU047200122201388744513887567Ratregion
5070039RH94432197201364478413644981Ratregion
5070145RH944981792097082619708440Ratregion
5070466AW047545117201360689713607014Ratregion
5063756AW5350841612096619899662150Ratregion
5062324BE1065321622090869029087064Ratregion
5063944BE120297171201532113415321305Ratregion
5064040BE120517155201047248910472644Ratregion
5062572BE106868184201359409213594276Ratregion
5065798BE109889201201319248613192687Ratregion
5061942AI029839182201058548710585706Ratregion
5063532BE107756194201707832517078519Ratregion
5063718BF404641224201104119711041420Ratregion
5065642BF406112173201662579316625966Ratregion
5066136BF413564912086474018647492Ratregion
5061244BI2935612002083390218339221Ratregion
5064718BE114994182201114644811146630Ratregion
5084112AI1755441742097045179704691Ratregion
5082251BE1190231612091384779138638Ratregion
5087034AI0085332022086483548648597Ratregion
5087757D10Bwg0447e173201135067711350850Ratregion
5088937AU04885894201410088914100983Ratregion
5089447AU049161131201362496013625093Ratregion
5083887AA892528237201273925512739492Ratregion
5081549AW4338361522093419539342105Ratregion
5084508AI409737148201000669310006841Ratregion
5084590AA94575396201242033912420435Ratregion
5084332AI176591952091849869185081Ratregion
5081951BF415458123201282013412820257Ratregion
5085062Lrrc3251201076028810760539Ratregion
5087968Itgb2108201106174511061853Ratregion
5081188RH142015195201051332010513515Ratregion
5082507BF416192241201078569410785935Ratregion
5080880RH141836192201049711610497308Ratregion
5086141AI102469154201016699110167145Ratregion
5081567BE1174011982086368768637074Ratregion
5085187Trpm2-predicted159201072953010730493Ratregion
5502649RH1262880201016846910168922Ratregion
5502649RH1262880201023157510232021Ratregion
5504125UniSTS:259034246201132403511325235Ratregion
5504129UniSTS:2590351122201040028910401411Ratregion
5504137ORF661487201216570212167189Ratregion
5504143UniSTS:2591684722090772909077762Ratregion
5504133UniSTS:2590800201205739712058397Ratregion
5504185UniSTS:259631287201076035510760642Ratregion
5504192UniSTS:259664489201049692210497411Ratregion
5504194Rsph16412093503979351038Ratregion
5507243AW539211922082792038279295Ratregion
5500941MARC_9679-9680:996688523:1241201276513712765917Ratregion
5502481RH1250590201334525913346323Ratregion
5502729BCR88201359539713595485Ratregion
5501954MARC_20758-20759:1025103834:102095568539557699Ratregion
Position Markers

Flank 1: (D20Rat49)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2208,042,410 - 8,042,534 (+)MAPPER
Rnor_6.0208,654,341 - 8,654,464NCBI
Rnor_5.02010,844,023 - 10,844,146UniSTS
RGSC_v3.4208,286,534 - 8,286,657UniSTS
RGSC_v3.4208,286,533 - 8,286,657RGD
RGSC_v3.1208,286,761 - 8,286,884RGD
Celera209,573,432 - 9,573,555UniSTS
RH 3.4 Map20105.9RGD
RH 3.4 Map20105.9UniSTS
RH 2.0 Map20112.8RGD
SHRSP x BN Map206.84RGD
Peak: (D20Rat3)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02012,317,154 - 12,317,307NCBI
Rnor_5.02014,479,656 - 14,479,835UniSTS
RH 3.4 Map20165.8RGD
RH 3.4 Map20165.8UniSTS
RH 2.0 Map20166.7RGD
SHRSP x BN Map2011.54RGD
FHH x ACI Map204.6798RGD
Cytogenetic Map20p12UniSTS
Flank 2: (D20Rat5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22017,617,832 - 17,617,956 (+)MAPPER
Rnor_6.02018,872,150 - 18,872,273NCBI
Rnor_5.02021,025,611 - 21,025,734UniSTS
RGSC_v3.42018,411,846 - 18,411,969UniSTS
RGSC_v3.42018,411,845 - 18,411,969RGD
RGSC_v3.12018,425,634 - 18,426,179RGD
Celera2019,015,307 - 19,015,430UniSTS
RH 2.0 Map20258.6RGD
SHRSP x BN Map2016.6599RGD
FHH x ACI Map209.1099RGD
Cytogenetic Map20p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804241017617956Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
631265Iresp1Immunoglobin response QTL18.3blood anti-double stranded DNA antibody amount (VT:0004762)serum anti-DNA antibody level (CMO:0001533)20903971913461775Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_map QTL associated with salt sensitivity alleles from SBH/Ygl 1578625
qtl_statistics_details MultiQTL software package used for linkage analysis; analysis was for month 7 single-trait analysis after unlateral nephrectomy 1578625