Eae20 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Eae20 (Experimental allergic encephalomyelitis QTL 20) Rattus norvegicus

Symbol: Eae20
Name: Experimental allergic encephalomyelitis QTL 20
RGD ID: 1581574
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: percentage of study population developing experimental autoimmune encephalomyelitis during a period of time   (CMO:0001047)    
LOD Score: 7.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24153,031,106 - 158,841,762RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.04152,482,121 - 158,564,471RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04219,525,801 - 225,566,369RGDRnor5.0
RGSC_v3.44155,974,180 - 162,362,144RGDRGSC3.4
RGSC_v3.14156,219,116 - 162,607,080RGD
Cross Type: Not Available
Strains Crossed: DA PVG.1AV1 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
percentage of study population developing experimental autoimmune encephalomyelitis during a period of time  IDA 1547849 RGD 

Experimental Condition
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Freund's incomplete adjuvant  IDA 1547849 RGD 
myelin oligodendrocyte glycoprotein  IDA 1547849intradermal injection 20ug/ratRGD 

Measurement Method
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
in vivo visual assessment  IDA 1547849 RGD 

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
DA  IEA 1547849 RGD 
PVG.1AV1  IEA 1547849 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
nervous system integrity trait  IDA 1547849 RGD 

Disease Annotations     Click to see Annotation Detail View

Experimental Data Annotations     Click to see Annotation Detail View

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
PVG.1AV1  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Resolution of a 16.8-Mb autoimmunity-regulating rat chromosome 4 region into multiple encephalomyelitis quantitative trait loci and evidence for epistasis. Jagodic M, etal., J Immunol 2005 Jan 15;174(2):918-24.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3639Scnn1asodium channel epithelial 1 subunit alpha4158122962158146184Rat
3706Slc2a3solute carrier family 2 member 34155960944156026000Rat
619983C1scomplement C1s4157430249157442438Rat
2554Eno2enolase 24157572085157580971Rat
2318Cd9CD9 molecule4158256328158289136Rat
61978Klrg1killer cell lectin like receptor G14155455465155467301Rat
620064Chd4chromodomain helicase DNA binding protein 44157898503157931632Rat
3896Tpi1triosephosphate isomerase 14157615283157618813Rat
2661Gapdhglyceraldehyde-3-phosphate dehydrogenase4157962312157967158Rat
621237Tnfrsf1aTNF receptor superfamily member 1A4158150815158163592Rat
620660Ptpn6protein tyrosine phosphatase, non-receptor type 64157526034157550783Rat
708344Gnb3G protein subunit beta 34157639468157645171Rat
708346Zfp384zinc finger protein 3844157810263157840052Rat
620160BidBH3 interacting domain death agonist4154113198154136353Rat
620552Ninj2ninjurin 24153306439153408618Rat
621366Mug1murinoglobulin 14155076270155130051Rat
735022Vom2r52vomeronasal 2 receptor, 524156918262156956543Rat
628733Erc1ELKS/RAB6-interacting/CAST family member 14152763664153055706Rat
621153Clstn3calsyntenin 34157331494157364769Rat
61832Atn1atrophin 14157554287157568092Rat
620537C3ar1complement C3a receptor 14156074747156084680Rat
621759Vwfvon Willebrand factor4158360152158491539Rat
620788Slc6a13solute carrier family 6 member 134154539246154577784Rat
2306Cd4Cd4 molecule4157668878157695366Rat
620255Slc6a12solute carrier family 6 member 124154585386154603750Rat
621529Ptmsparathymosin4157722384157726575Rat
2133Apobec1apolipoprotein B mRNA editing enzyme catalytic subunit 14155800030155828515Rat
1302962Mug2murinoglobulin 24155164061155236765Rat
1304952PianpPILR alpha associated neural protein4157796425157804842Rat
2004A2malpha-2-macroglobulin4154897770154947787Rat
1302936C1rlcomplement C1r subcomponent like4157394183157410771Rat
1303339Clec4dC-type lectin domain family 4, member D4156589591156598969Rat
621141Wnk1WNK lysine deficient protein kinase 14153128334153253905Rat
1304616Nop2NOP2 nucleolar protein4157932731157944462Rat
3948Vamp1vesicle-associated membrane protein 14158012634158019350Rat
1305699P3h3prolyl 3-hydroxylase 34157646238157662035Rat
1306053Necap1NECAP endocytosis associated 14156103935156119068Rat
1306985Bcl2l13Bcl2-like 134154056116154112890Rat
1302990Lag3lymphocyte activating 34157712665157722229Rat
1306294Mlf2myeloid leukemia factor 24157739651157744325Rat
1306557Hdhd5haloacid dehalogenase like hydrolase domain containing 54153701026153753303Rat
1306559Il17rainterleukin 17 receptor A4153667534153690174Rat
1304779Lrrc23leucine rich repeat containing 234157581285157592188Rat
1307612Pex5peroxisomal biogenesis factor 54157270671157296432Rat
735157Atp6v1e1ATPase H+ transporting V1 subunit E14154022360154044486Rat
1307437Gpr162G protein-coupled receptor 1624157662200157668341Rat
1303178NanogNanog homeobox4155943737155951116Rat
1308438Usp5ubiquitin specific peptidase 54157619643157634711Rat
1303222Aicdaactivation-induced cytidine deaminase4155774132155783972Rat
1359153Usp18ubiquitin specific peptidase 184154471634154499154Rat
1310710Ccdc77coiled-coil domain containing 774153534184153566059Rat
1560499Cd27CD27 molecule4158030700158035862Rat
1310854Spsb2splA/ryanodine receptor domain and SOCS box containing 24157612921157615293Rat
1310932Dppa3developmental pluripotency-associated 34155851461155854845Rat
1359354Clec4b2C-type lectin domain family 4, member B24156462742156486240Rat
1359355M6prmannose-6-phosphate receptor, cation dependent4155501080155510219Rat
1359163Clec4a2C-type lectin domain family 4, member A24156262438156321695Rat
13079161700013D24RikRIKEN cDNA 1700013D24 gene4157157264157241805Rat
1310070Cops7aCOP9 signalosome subunit 7A4157766626157792632Rat
1304975Rad52RAD52 homolog, DNA repair protein4153106062153128598Rat
1309407Ing4inhibitor of growth family, member 44157841882157850519Rat
1309091C1rcomplement C1r4157412718157423483Rat
1309203Phc1polyhomeotic homolog 14155510274155532636Rat
1310223Lpcat3lysophosphatidylcholine acyltransferase 34157468397157509889Rat
1308257Iffo1intermediate filament family orphan 14157945075157962302Rat
1306686Mrpl51mitochondrial ribosomal protein L514157991756157994715Rat
1307893TapbplTAP binding protein-like4158021454158028905Rat
1305429Kdm5alysine demethylase 5A4153565909153643912Rat
1307665Emg1EMG1 N1-specific pseudouridine methyltransferase4157509258157517540Rat
1309448Ltbrlymphotoxin beta receptor4158108884158115339Rat
1307919Mfap5microfibril associated protein 54155727925155750458Rat
1310382Cd163CD163 molecule4157085080157118470Rat
1564880Acrbpacrosin binding protein4157851149157864211Rat
1564178Gdf3growth differentiation factor 34155831572155835953Rat
1562580Lpar5lysophosphatidic acid receptor 54157870493157883970Rat
1564159Eef1e1-ps2eukaryotic translation elongation factor 1 epsilon 1, pseudogene 24154775536154776601Rat
1560851Rimklbribosomal modification protein rimK-like family member B4155664392155706888Rat
1565719Tuba3atubulin, alpha 3A4158075083158083972Rat
1561056B4galnt3beta-1,4-N-acetyl-galactosaminyl transferase 34153410907153509019Rat
1359504Mical3microtubule associated monooxygenase, calponin and LIM domain containing 34154152776154353274Rat
1359505Clec6a-ps1C-type lectin domain family 6, member A, pseudogene 14156539408156559032Rat
1359109Clec4a1C-type lectin domain family 4, member A14156173894156186009Rat
1359093Cdca3cell division cycle associated 34157634775157638799Rat
1359298Clec4eC-type lectin domain family 4, member E4156606927156612911Rat
1564182Cecr2CECR2, histone acetyl-lysine reader4153890310153998078Rat
1559669Slbp-ps1stem-loop binding protein, pseudogene 14156563058156563967Rat
1359528Clec4a3C-type lectin domain family 4, member A34156214030156224818Rat
1359662Clec4aC-type lectin domain family 4, member A4156340439156434212Rat
1563551RGD1563551similar to ribosomal protein L314156096896156097888Rat
1584727Rpl4-ps7ribosomal protein L4, pseudogene 74153376053153378932Rat
1561712Vom2r51vomeronasal 2 receptor, 514156834644156884468Rat
1566313Cpamd8C3 and PZP-like, alpha-2-macroglobulin domain containing 84155332827155413098Rat
1566165Vom2r50vomeronasal 2 receptor, 504156801318156823561Rat
1566041Tuba8tubulin, alpha 84154440045154456918Rat
1561715C1s-ps1complement C1s, pseudogene 14157059237157061211Rat
1562596Ncapd2non-SMC condensin I complex, subunit D24157968814157992314Rat
1565101Foxj2forkhead box J24156047043156073540Rat
1565302Tmem121btransmembrane protein 121B4153695193153700497Rat
1589986Vom2r49vomeronasal 2 receptor, 494156733978156781086Rat
1590470Slc25a18solute carrier family 25 member 184154000808154021373Rat
1584998Pex26peroxisomal biogenesis factor 264154414332154426954Rat
1584999LOC297568alpha-1-inhibitor III4154980279155036688Rat
1584878Sav1-ps1salvador family WW domain containing protein 1, pseudogene 14155048501155049735Rat
1585454Vom2r48vomeronasal 2 receptor, 484156661971156702951Rat
1593191Iqsec3IQ motif and Sec7 domain ArfGEF 34154610933154707310Rat
1588989Tomm20-ps1translocase of outer mitochondrial membrane 20, pseudogene 14155881523155882431Rat
1591606Ano2anoctamin 24158514200158855639Rat
620203Phb2prohibitin 24157517662157522268Rat
2318544Plekhg6pleckstrin homology and RhoGEF domain containing G64158163443158182628Rat
2319177Zfp42lZinc finger protein 42-like4157344350157345416Rat
2318975Grcc10gene rich cluster, C10 gene4157551276157552924Rat
4888590Mir3575microRNA 35754157523652157523766Rat
2325407Mir141microRNA 1414157523239157523332Rat
2325553Mir200cmicroRNA 200c4157523679157523747Rat
6490793Vdac2-ps4voltage-dependent anion channel 2, pseudogene 44154880345154881160Rat
7507389LOC102554095uncharacterized LOC1025540954157831204157851015Rat
7621965LOC102553072uncharacterized LOC1025530724154499466154500917Rat
7639415LOC102553847uncharacterized LOC1025538474157410200157417093Rat
7594196LOC102549865uncharacterized LOC1025498654157561359157563262Rat
7566034LOC102553981uncharacterized LOC1025539814157727912157734774Rat
7708239LOC102555545uncharacterized LOC1025555454158058337158075209Rat
7702915LOC102553636uncharacterized LOC1025536364157375080157391503Rat
9230431LOC10369222160S ribosomal protein L17 pseudogene4157313085157313947Rat
9472652LOC10369221040S ribosomal protein S12 pseudogene4153219586153220023Rat
9455361LOC103694898COMM domain-containing protein 6 pseudogene4153087395153094324Rat
11370866LOC108350753uncharacterized LOC1083507534153846873153873689Rat
11450202LOC108350756uncharacterized LOC1083507564155137257155149163Rat
11453896LOC108350755thymosin beta-10 pseudogene4155001910155003394Rat
11516150Eif4e-ps1eukaryotic translation initiation factor 4E, pseudogene 14156653571156657665Rat
11488957Trnaa-agc5transfer RNA alanine (anticodon AGC) 54155610386155610452Rat
41205097Trnaa-agc80transfer RNA alanine (anticodon AGC) 804153468859153468931Rat
41287307LOC120102385uncharacterized LOC1201023854157663064157665454Rat
41146352LOC120102380small ubiquitin-related modifier 1-like4155619960155620555Rat
41120875Cox7c-ps3Cytochrome c oxidase subunit 7C, pseudogene 34155783930155785243Rat
41187910LOC120102382uncharacterized LOC1201023824156027337156039551Rat
41366642Scarna10small Cajal body-specific RNA 104157986558157986885Rat
41213572LOC120102610U7 small nuclear RNA4157552861157552922Rat
41268541Rnu6-212RNA, U6 small nuclear 2124158206300158206401Rat
41370877LOC120102391uncharacterized LOC1201023914158182694158185265Rat
41371508LOC120102389uncharacterized LOC1201023894157913815157921519Rat
41292079Tmsb10-ps4thymosin, beta 10, pseudogene 44155392522155394525Rat
41105292Trnal-aag13transfer RNA leucine (anticodon AAG) 134153529208153529282Rat
41271751LOC120102378uncharacterized LOC1201023784153689331153692583Rat
41081789LOC120102747small nucleolar RNA U894157520539157520799Rat
41163406LOC120102386uncharacterized LOC1201023864157660415157662419Rat
41401725LOC120102735small nucleolar RNA SNORA174156772988156773105Rat
41200147LOC120102584U6 spliceosomal RNA4157772787157772892Rat
40978413LOC120102509uncharacterized LOC1201025094154458546154471554Rat
40933824LOC120102387uncharacterized LOC1201023874157788553157793531Rat
40984833Trnap-agg37transfer RNA proline (anticodon AGG) 374157888872157888946Rat
41005265LOC120102550uncharacterized LOC1201025504158115475158123311Rat
40988507LOC120102549killer cell lectin-like receptor subfamily G member 14155426357155433041Rat
41008723LOC120102388uncharacterized LOC1201023884157783186157787376Rat
40989992Rpl7-ps25ribosomal protein L7, pseudogene 254156171212156172467Rat
40942840LOC120102738small Cajal body-specific RNA 114157923016157923151Rat
41024371LOC120102557U4 spliceosomal RNA4155771670155771782Rat
41078896LOC120102377uncharacterized LOC1201023774153055775153064184Rat
41030033LOC120102587U6 spliceosomal RNA4158700406158700512Rat
41257034LOC120102390uncharacterized LOC1201023904158028943158032695Rat
41299711LOC120102384uncharacterized LOC1201023844157572998157576719Rat
41227954LOC120102684small nucleolar RNA SNORA174157084756157084883Rat
41237120LOC120102383uncharacterized LOC1201023834157404793157408561Rat
41066520LOC120102683small nucleolar RNA SNORA174156849122156849249Rat
41018919LOC120102626small nucleolar RNA SNORA704158053924158054052Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10048D4Mit202394154902669154902892Ratregion
10049D4Wox161894154896195154896338Ratregion
10522D4Wox141204157578205157578332Ratregion
10522D4Wox141204157578205157578332Ratregion
10523D4Wox151804157578615157578785Ratregion
10523D4Wox151804157578615157578785Ratregion
10524D4Mit31194157573398157573521Ratregion
10524D4Mit31194157573398157573521Ratregion
10526D4Got1341474157573397157573546Ratregion
10526D4Got1341474157573397157573546Ratregion
11146D1Mgh301184157578663157578781Ratregion
11146D1Mgh301184157578663157578781Ratregion
34473D4Mgh101464155936364155936504Ratregion
11377D4Mit11184157578182157578333Ratregion
11377D4Mit11184157578182157578333Ratregion
36231D4Rat641504153173847153173999Ratregion
35344D4Rat631514153274175153274330Ratregion
35533D4Rat651314155022860155022988Ratregion
36926D4Rat661234157704599157704722Ratregion
37922D4Rat902014156653369156653578Ratregion
36440D4Rat621644154716992154717160Ratregion
35879D4Rat671404157710145157710285Ratregion
40660D4Rat2031484158112655158112799Ratregion
38612D4Rat1131124153826368153826492Ratregion
40156D4Rat2011744153075903153076071Ratregion
40322D4Rat2021254155883600155883716Ratregion
42147D4Arb152154154896113154896328Ratregion
42154D4Arb232404157578142157578385Ratregion
42154D4Arb232404157578142157578385Ratregion
42180D4Arb402344154894516154894752Ratregion
41710D4Rat2412254153799628153799860Ratregion
60422D4Got1361424157232171157232313Ratregion
60413D4Got1262644156050654156050920Ratregion
60414D4Got1271604157778202157778362Ratregion
60415D4Got1281464156085418156085563Ratregion
60416D4Got1291834158075992158076173Ratregion
60418D4Got1312134158260855158261065Ratregion
60419D4Got1322524158841508158841762Ratregion
625810D4Got1372044154379905154380109Ratregion
629592D4Hmgc21964158133085158133293Ratregion
66659D2Mco171434154786975154787045Ratregion
1630250D4Got2941634156226387156226550Ratregion
1630250D4Got2941634156226387156226550Ratregion
1630596D4Wox361764158447303158447479Ratregion
1631981D4Cebr11394157347999157348138Ratregion
1629447D4Got2453814153074019153074281Ratregion
1640609D4Got2372294155771570155771799Ratregion
1634879D4Wox502644157583043157583307Ratregion
1634879D4Wox502644157583043157583307Ratregion
1637883D4Wox491544155828194155828348Ratregion
1634254D4Got2382984157406229157406527Ratregion
5036041D4Won452614155097857155098120Ratregion
5036273EC218RR1204157571116157571236Ratregion
5036273EC218RR1204157571116157571236Ratregion
5036400Ltbr1664158109432158109598Ratregion
5036494UniSTS:1444261624155963096155963258Ratregion
5036535Vamp12264158019065158019291Ratregion
5036537Vwf2024158447823158448025Ratregion
5035725RH648271394157931463157931602Ratregion
5033859RH1403861214157503947157504068Ratregion
5032022AU0463343444155584120155584481Ratregion
5032022AU0463343444155584140155584481Ratregion
5032323C1s1374157436555157437461Ratregion
5029657BI2776321514153994021153994172Ratregion
5032501D6Ertd380e1954157931232157931427Ratregion
5027129WI-80133334157766990157767323Ratregion
5027323AI3259481074155673580155673688Ratregion
5032861RH1367571204157855052157855172Ratregion
5025022BE2926151134158019003158019116Ratregion
5025250RH1275931974157850174157850371Ratregion
5025410RH1282092044157521941157522145Ratregion
5030621AA9559671344155510343155510477Ratregion
5025634RH1290711504154108761154108911Ratregion
5028271D6Mit2171634158120313158120476Ratregion
5030947BE1084421564154220036154220192Ratregion
5028464C862532184156606828156607046Ratregion
5051415AI5287791084158075128158075236Ratregion
5053657RH1427751344153639189153639323Ratregion
5051633BB16399304157839470157839584Ratregion
5051745RH946341604158017434158017594Ratregion
5052077RH948261134158163236158163349Ratregion
5054107RH1430342514157613045157613296Ratregion
5054107RH1430342514157613045157613296Ratregion
5054361RH1431801014153164435153164536Ratregion
5057406AA9637931824157931325157931507Ratregion
5054655RH1433491634155961710155961873Ratregion
5059464BI2910131184156075544156075662Ratregion
5059524AW5246861794153642083153642262Ratregion
5055535RH1438571104155529803155529913Ratregion
5054987RH1435402204157929005157929225Ratregion
5057968BE1017681644157361438157361602Ratregion
5058532BI2907151674154610380154610636Ratregion
5058626BF3934401364154220920154221056Ratregion
5055819RH1440211464157662493157662639Ratregion
5058810BI2780542134157722393157722606Ratregion
5056545RH1444402564153756342153756598Ratregion
5056917RH1446551534154479755154479909Ratregion
5056773RH1445722074154452488154452695Ratregion
5052795RH1422781744157804459157804633Ratregion
5059762BE1031871784157581316157581494Ratregion
5059762BE1031871784157581316157581494Ratregion
5052851RH1423111504154603611154603761Ratregion
5052871RH1423221984157422678157422876Ratregion
5058222BF3868351804154006116154006296Ratregion
5052873RH1423231674157522041157522208Ratregion
5054449RH1432301854157486494157486679Ratregion
5051737RH94629694158145273158145342Ratregion
5041596RH1289481584157744053157744211Ratregion
5041414RH1288432044153126853153127057Ratregion
5041780RH1290541704157995206157995376Ratregion
5044706RH1307571904158213865158214054Ratregion
5044320RH1305352134156224520156224733Ratregion
5045216RH1310511884157721378157721566Ratregion
5045644RH1312962054158108974158109179Ratregion
5047766RH1325161804153063941153064121Ratregion
5046664RH1318841994154334295154334939Ratregion
5046864RH1319991884157639507157639695Ratregion
5048220RH1327771934158491246158491439Ratregion
5049734RH1336511994153408321153408520Ratregion
5041926RH1291392034157638556157638759Ratregion
5042456RH1294441924154112526154112718Ratregion
5042490RH1294651814155673629155673810Ratregion
5048542RH1329632154156188901156189116Ratregion
5039444RH1277092074157767314157767521Ratregion
5043142RH1298562164157572122157572338Ratregion
5043142RH1298562164157572122157572338Ratregion
5040844RH1285162064157422894157423098Ratregion
5042842RH1296771804157968931157969114Ratregion
5041066RH1286432084155961050155961258Ratregion
5043844RH1302601824154498940154499122Ratregion
5072478RH1368731894157646252157646441Ratregion
5076360RH1391301294158258995158259124Ratregion
5080552RH1416451884157668945157669133Ratregion
5075198RH1384551894154236687154236876Ratregion
5075210RH1384621294156077849156077978Ratregion
5077532RH1398101964157992767157993468Ratregion
5076714RH1393362324158741748158741980Ratregion
7240487D4Kiru901874156124880156125067Ratregion
7240489D4Kiru1512404156191879156192119Ratregion
7240491D4Kiru122054156207922156208127Ratregion
7240493D4Kiru961934156260547156260744Ratregion
7240495D4Kiru551644156684359156684523Ratregion
7240497D4Kiru592494156704822156705071Ratregion
7240499D4Kiru772474156879824156880073Ratregion
7240501D4Kiru802524156955988156956242Ratregion
7240503D4Kiru1112124157431808157432020Ratregion
7240505D4Kiru1121294157444420157444549Ratregion
5077988RH1400772034157839189157839392Ratregion
5079820RH1412221914156118668156118859Ratregion
5078668RH140480904157513016157513106Ratregion
5079900RH1412672094157944179157944388Ratregion
5079900RH1412672094157944179157944388Ratregion
5078244RH1402271944157961933157962127Ratregion
5078304RH1402631804157423226157423406Ratregion
5078950RH1406462054153253583153253788Ratregion
5080140RH1414072164157059101157059317Ratregion
5080140RH1414072164157430433157430649Ratregion
5078326RH1402761554157117692157117847Ratregion
5078490RH1403731394154187043154187182Ratregion
5073052RH1372072104157270840157271050Ratregion
5070898RH1347691964154577444154577640Ratregion
5078720RH1405121584157994729157994887Ratregion
5071638RH1351981854153137553153137755Ratregion
5074074RH1378052104157330724157330934Ratregion
5074106RH1378252034157587179157587382Ratregion
5074106RH1378252034157587179157587382Ratregion
5071188RH1349381814156073235156073416Ratregion
5071864RH1353292034153409493153410013Ratregion
5061732BF4027582434157564318157564561Ratregion
5061732BF4027582434157564318157564561Ratregion
5066970AU0480421874158112657158112846Ratregion
5067538AU0476851634154993866154994029Ratregion
5068322AU0472152094153134671153134880Ratregion
5068708AU046982924157854700157855312Ratregion
5068868AU0468761364158694785158694918Ratregion
5070107RH944771744157670088157670262Ratregion
5063604BE1078321964157977269157977465Ratregion
5060614BI2862272054156027504156027709Ratregion
5063834BE1200141534158599853158600006Ratregion
5065592BE1094141774154153877154154054Ratregion
5065626BF4126622424154266535154266777Ratregion
5060820BF3957791244153373363153373487Ratregion
5066104BF4134081664155982736155982902Ratregion
5066202AA9980171444156113085156113229Ratregion
5063008BI2957141304154606198154606328Ratregion
5061420BE1051331574157993998157994155Ratregion
5087668D4Won472954155577738155578033Ratregion
5087672D4Won563484157663658157664006Ratregion
5088100Slc2a31224155962997155963119Ratregion
5087390AA9263151894153575145153575334Ratregion
5083207BI2753381194153405832153405951Ratregion
5088179AU0484141844155938174155938360Ratregion
5089421AU0491462004154066032154066232Ratregion
5089505AU0491952554158822360158822615Ratregion
5084724AI4113872134157619843157620056Ratregion
5084724AI4113872134157619843157620056Ratregion
5087670D4Won522184156684151156684369Ratregion
5087842UniSTS:1429921834157575427157575610Ratregion
5087842UniSTS:1429921834157575427157575610Ratregion
5081312RH1420871984158163215158163413Ratregion
5082479BI2748231744153410542153410716Ratregion
5086086BM3853282074153324416153324623Ratregion
5084650AI4112731524157526457157526963Ratregion
5083359AA8184831924154022513154022705Ratregion
5504436PMC20520P12834155962974155963257Ratregion
5504324D16S2601E1324156135401156135533Ratregion
5506507RH790891304154034951154035792Ratregion
5507161UniSTS:2248901114155800828155800939Ratregion
5507195UniSTS:2251091094155673578155673688Ratregion
5502160MARC_7181-7182:996687603:13874157622121157622508Ratregion
5502160MARC_7181-7182:996687603:13874157622121157622508Ratregion
5499919UniSTS:2355402764154111853154112129Ratregion
5499921UniSTS:2355561044157970683157970787Ratregion
5502439RH124853904153629839153629929Ratregion
5500657RH1365192054157743973157744178Ratregion
5500675RH1366161924155619936155620127Ratregion
5503698MARC_34374-34375:1062687298:14574157931029157931486Ratregion
5501303D8S2817074153162583153162986Ratregion
5501744MARC_10541-10542:1000149110:104157642135157642688Ratregion
5502096MARC_4161-4162:996679469:12274157519411157520248Ratregion
5502643RH1261382214157744080157744301Ratregion
Position Markers

Flank 1: (D14Rat113)
Rat AssemblyChrPosition (strand)Source
RH 2.0 Map14174.1RGD
SHRSP x BN Map146.9RGD
Peak: (D4Mgh10)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,936,364 - 155,936,504 (+)MAPPER
Rnor_6.04155,523,227 - 155,523,366NCBI
Rnor_5.04222,546,016 - 222,546,155UniSTS
RGSC_v3.44159,168,092 - 159,168,232RGD
RGSC_v3.44159,168,093 - 159,168,232UniSTS
RGSC_v3.14159,413,028 - 159,413,168RGD
Celera4144,755,177 - 144,755,316UniSTS
Cytogenetic Map4 RGD
Flank 2: (D4Got132)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24158,841,508 - 158,841,762 (+)MAPPER
Rnor_6.04158,564,220 - 158,564,471NCBI
Rnor_5.04225,566,118 - 225,566,369UniSTS
RGSC_v3.44162,361,892 - 162,362,144RGD
RGSC_v3.44162,361,893 - 162,362,144UniSTS
RGSC_v3.14162,606,829 - 162,607,080RGD
Celera4147,567,471 - 147,567,722UniSTS
RH 3.4 Map41002.1RGD
RH 3.4 Map41002.1UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
1581574Eae20Experimental allergic encephalomyelitis QTL 207.8nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4153031106158841762Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
731178Oia7Oil induced arthritis QTL 70.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4156050654157232313Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4157680158158841762Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details QTL also linked to onset of disease, change in body weight, and severity of disease 1547849