Cm57 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Cm57 (Cardiac mass QTL 57) Rattus norvegicus

Symbol: Cm57
Name: Cardiac mass QTL 57
RGD ID: 1581509
Also known as: Lvm13
Trait: heart left ventricle mass   (VT:0007031)    
Measurement Type: heart left ventricle weight to body weight ratio   (CMO:0000530)    
LOD Score: 4.5
P Value: 0.05
Variance: 5.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21781,153,923 - 81,208,154RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01785,183,543 - 85,236,284RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01786,907,303 - 86,961,249RGDRnor5.0
RGSC_v3.41770,094,251 - 97,296,363RGDRGSC3.4
RGSC_v3.11770,105,085 - 97,307,196RGD
Cross Type: Not Available
Strains Crossed: WKY/Cfd WKHA/Cfd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Cacnb2 is a candidate Gene for Cm57

Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
WKHA/Cfd  (IEA)
WKY/Cfd  (IEA)

References

References - curated
1. Llamas B, etal., Mamm Genome. 2005 Sep;16(9):700-11. Epub 2005 Oct 20.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41056436LOC120097882uncharacterized LOC120097882178116188281166210Rat
41060155LOC120097767ATP-dependent RNA helicase DDX39A-like178114101381159511Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
35735D17Rat49163178120815481208315Ratregion
35827D17Rat52157178115374281153923Ratregion
Position Markers

Flank 1: (D17Rat49)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21781,208,154 - 81,208,315 (+)MAPPER
Rnor_6.01785,236,284 - 85,236,444NCBI
Rnor_5.01786,961,249 - 86,961,409UniSTS
Celera1780,489,408 - 80,489,568UniSTS
RH 3.4 Map17833.2RGD
RH 3.4 Map17833.2UniSTS
RH 2.0 Map17714.3RGD
SHRSP x BN Map1747.5399RGD
FHH x ACI Map1765.46RGD
Cytogenetic Map17q12.3UniSTS
Peak: (D17Rat52)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21781,153,742 - 81,153,923 (+)MAPPER
Rnor_6.01785,183,365 - 85,183,543NCBI
Rnor_5.01786,907,125 - 86,907,303UniSTS
RGSC_v3.41792,594,162 - 92,594,341RGD
RGSC_v3.41792,594,163 - 92,594,341UniSTS
RGSC_v3.11792,604,996 - 92,605,174RGD
Celera1780,435,759 - 80,435,937UniSTS
RH 3.4 Map17830.9RGD
RH 3.4 Map17830.9UniSTS
RH 2.0 Map17697.9RGD
SHRSP x BN Map1747.5999RGD
Cytogenetic Map17q12.3UniSTS
Flank 2: (D17Rat52)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21781,153,742 - 81,153,923 (+)MAPPER
Rnor_6.01785,183,365 - 85,183,543NCBI
Rnor_5.01786,907,125 - 86,907,303UniSTS
RGSC_v3.41792,594,162 - 92,594,341RGD
RGSC_v3.41792,594,163 - 92,594,341UniSTS
RGSC_v3.11792,604,996 - 92,605,174RGD
Celera1780,435,759 - 80,435,937UniSTS
RH 3.4 Map17830.9RGD
RH 3.4 Map17830.9UniSTS
RH 2.0 Map17697.9RGD
SHRSP x BN Map1747.5999RGD
Cytogenetic Map17q12.3UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)177100332581153923Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)177177462182479847Rat
1581509Cm57Cardiac mass QTL 574.50.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)178115392381208154Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details MapManager QTX used for linkage analysis; analysis was for male rats only 1578726