Bmd10 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bmd10 (Bone mineral density QTL 10) Rattus norvegicus

Symbol: Bmd10
Name: Bone mineral density QTL 10
RGD ID: 1578671
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: compact volumetric bone mineral density   (CMO:0001730)    
LOD Score: 5.4
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.029,444,679 - 68,866,454RGD_MAPPER_PIPELINERnor6.0
Rnor_5.029,324,722 - 88,595,515RGDRnor5.0
RGSC_v3.429,670,332 - 227,150,249RGDRGSC3.4
RGSC_v3.129,594,136 - 227,136,928RGD
Cross Type: Not Available
Strains Crossed: F344/NHsd LEW/NHsd 



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
F344/NHsd  (IEA)
LEW/NHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification of a quantitative trait locus on rat chromosome 4 that is strongly linked to femoral neck structure and strength. Alam I, etal., Bone. 2006 Feb 2;.
2. Epistatic effects contribute to variation in BMD in Fischer 344 x Lewis F2 rats. Koller DL, etal., J Bone Miner Res. 2008 Jan;23(1):41-7.
Related QTLs

Related QTL Description Reference
Bmd1 interacts with RGD:2293187


Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D2Rat1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2211,852,062 - 11,852,238 (+)MAPPER
Rnor_6.029,444,679 - 9,444,852NCBI
Rnor_5.029,324,722 - 9,324,895UniSTS
RGSC_v3.429,670,332 - 9,670,680RGD
RGSC_v3.429,670,413 - 9,670,586UniSTS
RGSC_v3.129,594,136 - 9,594,484RGD
Celera28,212,273 - 8,212,446UniSTS
RH 2.0 Map20.0RGD
SHRSP x BN Map20.0299RGD
FHH x ACI Map20.0899RGD
Cytogenetic Map2q11UniSTS
Flank 2: (D2Rat61)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21879,924,734 - 79,925,127 (+)MAPPER
Rnor_6.0268,865,414 - 68,866,454NCBI
Rnor_5.0288,594,475 - 88,595,515UniSTS
RGSC_v3.42227,150,052 - 227,150,249UniSTS
RGSC_v3.42227,150,051 - 227,150,248RGD
RGSC_v3.12227,136,731 - 227,136,928RGD
Celera2210,543,293 - 210,543,469UniSTS
RH 3.4 Map21546.8RGD
RH 3.4 Map21546.8UniSTS
RH 2.0 Map21129.9RGD
SHRSP x BN Map288.6498RGD
FHH x ACI Map2101.7399RGD
Cytogenetic Map2q42-q43UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference