Schws5 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: Schws5 (Schwannoma susceptibility QTL 5) Rattus norvegicus

Symbol: Schws5
Name: Schwannoma susceptibility QTL 5
RGD ID: 1576318
Previously known as: Mediating schwannoma susceptibility QTL 5; Mss5
Trait: nervous system integrity trait   (VT:0010566)    
Measurement Type: post-insult time to trigeminal nerve neurilemmoma formation   (CMO:0002019)    
LOD Score: Not Available
P Value: 0.0351
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01372,405,088 - 117,405,088RGDRnor5.0
RGSC_v3.41365,464,406 - 110,464,406RGDRGSC3.4
RGSC_v3.11365,653,194 - 110,653,194RGD
Cross Type: Not Available
Strains Crossed: BDIV/Zte BDIX/Zte 



Disease Annotations     Click to see Annotation Detail View
neurilemmoma  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BDIV/Zte  (IEA)
BDIX/Zte  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Gender-specific polygenic control of ethylnitrosourea-induced oncogenesis in the rat peripheral nervous system. Koelsch BU, etal., Int J Cancer. 2006 Jan 1;118(1):108-14.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D13Rat191)
Rat AssemblyChrPosition (strand)Source
Rnor_5.01394,904,980 - 94,905,196NCBI
RGSC_v3.41387,964,299 - 87,964,514RGD
RGSC_v3.11388,152,875 - 88,153,513RGD
FHH x ACI Map1340.53RGD
FHH x ACI Map1340.53UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details logistic regression model for analysis of schwannoma incidence (dichotomous), Cox regression model for analysis of survival times (quantitative); significant for males only, both for schwannoma incidence (p=0.0381) and length of survival time (p=0.0351) 1559300