Bp272 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: Bp272 (Blood pressure QTL 272) Rattus norvegicus

Symbol: Bp272
Name: Blood pressure QTL 272
RGD ID: 1359023
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: 2.5
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8622,288,257 - 32,981,219RGD_MAPPER_PIPELINE
mRatBN7.2616,536,140 - 27,261,739RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.061,120,393 - 28,706,721RGD_MAPPER_PIPELINERnor6.0
Rnor_5.061,111,498 - 38,512,233RGDRnor5.0
RGSC_v3.461,301,952 - 27,253,998RGDRGSC3.4
RGSC_v3.161,301,953 - 27,256,951RGD
Cross Type: recombinantinbred
Strains Crossed: BXH/Ipcv HXB/Ipcv 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
hypertension  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BXH/Ipcv  (IEA)
HXB/Ipcv  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Heart rate and blood pressure quantitative trait loci for the airpuff startle reaction. Jaworski RL, etal., Hypertension 2002 Feb;39(2 Pt 2):348-52.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1564128Vitvitrin61644596616565644Rat
619709Fez2fasciculation and elongation protein zeta 261665457216694628Rat
40956779LOC120093475U2 spliceosomal RNA61667808216678256Rat
1308710Crim1cysteine rich transmembrane BMP regulator 161669586416870264Rat
41357253LOC120103478uncharacterized LOC12010347861681892116820617Rat
2323142Nsa2-ps2NSA2 ribosome biogenesis factor, pseudogene 261688941016892523Rat
1587169H3f3a-ps1H3.3 histone A, pseudogene 161697392316974753Rat
7711568LOC102553200uncharacterized LOC10255320061759201217596460Rat
1592088Hsp90ab1-ps3heat shock protein 90 alpha family class B member 1, pseudogene 361782661217828822Rat
41384706Ndufa12-ps1NADH:ubiquinone oxidoreductase subunit A12, pseudogene 161816135018161849Rat
11495481LOC108351326peptidyl-prolyl cis-trans isomerase D pseudogene61881549218816893Rat
41222005LOC120093295U6 spliceosomal RNA61904531919045424Rat
1583780Hspd1-ps11heat shock protein family D (Hsp60) member 1, pseudogene 1161927385119276050Rat
41200534LOC120093234uncharacterized LOC12009323461959860619614675Rat
1583779St13-ps3ST13, Hsp70 interacting protein, pseudogene 361973853019740177Rat
1583702Ldha-ps13lactate dehydrogenase A, pseudogene 1361977230219773267Rat
1305486Fam98afamily with sequence similarity 98, member A61987408219888744Rat
1304612Rasgrp3RAS guanyl releasing protein 361989536119993945Rat
7676249Rpl32-ps18ribosomal protein L32, pseudogene 1861994876019958584Rat
68379Ltbp1latent transforming growth factor beta binding protein 162002962920425339Rat
41098799LOC120103479uncharacterized LOC12010347962008854420109208Rat
11470604LOC10835135640S ribosomal protein S18 pseudogene62045050520450948Rat
41211263LOC120093429small nucleolar RNA SNORA4862053064520530788Rat
1305264Ttc27tetratricopeptide repeat domain 2762055875620702126Rat
11419109LOC108351178uncharacterized LOC10835117862061936220624156Rat
41392415LOC120093282U6 spliceosomal RNA62063098220631088Rat
1307247Birc6baculoviral IAP repeat-containing 662072292220916396Rat
1310157Yipf4Yip1 domain family, member 462095077420962195Rat
1309831Nlrc4NLR family, CARD domain containing 462099178521018254Rat
1309250Slc30a6solute carrier family 30 member 662102093121050785Rat
9086644LOC103692563uncharacterized LOC10369256362105087021070583Rat
1308494Spastspastin62105534921106586Rat
1591362Rpl18a-ps5ribosomal protein L18A, pseudogene 562110843121109299Rat
41372126LOC120103480uncharacterized LOC12010348062111770921120267Rat
708575Dpy30dpy-30 histone methyltransferase complex regulatory subunit62112094721141720Rat
1309929Memo1mediator of cell motility 162114452521234363Rat
41157183Hmgb2-ps4high mobility group box 2, pseudogene 462135447221356273Rat
1586183Pym1-ps1PYM homolog 1, exon junction complex associated factor, pseudogene 162139209421394047Rat
621480Srd5a2steroid 5 alpha-reductase 262142622521465727Rat
41120104LOC120093428small nucleolar RNA SNORA4862148057021480717Rat
2323407Sf3b4-ps1splicing factor 3B subunit 4, pseudogene 162151423021515489Rat
62043Xdhxanthine dehydrogenase62153046321592172Rat
621762Ehd3EH-domain containing 362164086121665601Rat
40933028LOC120103483uncharacterized LOC12010348362167718321701385Rat
1310068Galnt14polypeptide N-acetylgalactosaminyltransferase 1462175603921977533Rat
1562682Capn13calpain 1362207184522166864Rat
1589005Fam241b-ps1family with sequence similarity 241 member B, pseudogene 162218320122184227Rat
7531265LOC102547438uncharacterized LOC10254743862221412822219472Rat
1565906Lclat1lysocardiolipin acyltransferase 162222893322373246Rat
41195560LOC120093473small nucleolar RNA SNORA1762229186222291977Rat
6488952LOC100912066uncharacterized LOC10091206662237331622421143Rat
11440644LOC108351184uncharacterized LOC10835118462253829522551745Rat
1584525LbhLBH regulator of WNT signaling pathway62256923822593056Rat
1309657Ypel5yippee-like 562265628422671741Rat
9094701LOC103692567uncharacterized LOC10369256762278448722840562Rat
628622AlkALK receptor tyrosine kinase62287965323599636Rat
11422410LOC108351183uncharacterized LOC10835118362289723523002084Rat
1359510Sfnl1stratifin like 162296515122966436Rat
11394189LOC108351180uncharacterized LOC10835118062338229823394542Rat
1311049Clip4CAP-GLY domain containing linker protein family, member 462359772923601000Rat
1311049Clip4CAP-GLY domain containing linker protein family, member 462361628023697625Rat
1311049Clip4CAP-GLY domain containing linker protein family, member 462371858023729231Rat
1304963Pcarephotoreceptor cilium actin regulator62374970023758424Rat
1310677Togaram2TOG array regulator of axonemal microtubules 262377097923828884Rat
1565005Wdr43WD repeat domain 4362384549923884846Rat
41351625Snord53bsmall nucleolar RNA, C/D box 53B62386066023860735Rat
40956032Snord53small nucleolar RNA, C/D box 5362386137723861454Rat
41332489Snord92small nucleolar RNA, C/D box 9262387062723870715Rat
11359993Trnac-gca30transfer RNA cysteine (anticodon GCA) 3062389874323898814Rat
621730Spdyaspeedy/RINGO cell cycle regulator family member A62390557423954926Rat
3376Ppp1cbprotein phosphatase 1 catalytic subunit beta62395881323992841Rat
621565Plb1phospholipase B162408705124227167Rat
41338793LOC120103485uncharacterized LOC12010348562409263424098070Rat
1597860Pym1-ps2PYM homolog 1, exon junction complex associated factor, pseudogene 262426322324276159Rat
2628Fosl2FOS like 2, AP-1 transcription factor subunit62429789824319219Rat
735111Babam2BRISC and BRCA1 A complex member 262436902124788416Rat
1310064Rbksribokinase62474765124824290Rat
2322809Mrpl33mitochondrial ribosomal protein L3362482580024833994Rat
7699142LOC102548914uncharacterized LOC10254891462489341324897027Rat
1307080Slc4a1apsolute carrier family 4 member 1 adaptor protein62490594124933651Rat
1562206Supt7lSPT7 like, STAGA complex subunit gamma62493394124944656Rat
1589985Gpn1GPN-loop GTPase 162494735024965025Rat
1560110Ccdc121coiled-coil domain containing 12162497084524973451Rat
1561526Zfp512zinc finger protein 51262497690325007913Rat
7513610Spata31h1SPATA31 subfamily H member 162502371825040928Rat
2671Gckrglucokinase regulator62504459225075834Rat
6496095Fndc4fibronectin type III domain containing 462507715525080812Rat
620744Ift172intraflagellar transport 17262508193325121271Rat
1596516Krtcap3keratinocyte associated protein 362512093825122522Rat
1589575Nrbp1nuclear receptor binding protein 162512263525133209Rat
628676Ppm1gprotein phosphatase, Mg2+/Mn2+ dependent, 1G62515355625173763Rat
1310456Zfp513zinc finger protein 51362517418125177442Rat
1306424Snx17sorting nexin 1762517752825183001Rat
620208Eif2b4eukaryotic translation initiation factor 2B subunit delta62518317725188832Rat
1560392Gtf3c2general transcription factor IIIC subunit 262519643925221338Rat
1310512Mpv17mitochondrial inner membrane protein MPV1762522166825236241Rat
3929Ucnurocortin62523812025238950Rat
1306453Trim54tripartite motif-containing 5462523934025258511Rat
1307426Dnajc5gDnaJ heat shock protein family (Hsp40) member C5 gamma62526008725264251Rat
1359689Slc30a3solute carrier family 30 member 362526431025284720Rat
1588606Cadcarbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase62529213325315078Rat
1311605Atraidall-trans retinoic acid-induced differentiation factor62531523625319821Rat
69648Slc5a6solute carrier family 5 member 662531918725331713Rat
1586500Tcf23transcription factor 2362539788925406639Rat
2315526Prr30proline rich 3062541506925417582Rat
61929Prebprolactin regulatory element binding62541880525422594Rat
1310988Abhd1abhydrolase domain containing 162542252625427514Rat
620801Cgref1cell growth regulator with EF hand domain 162543184625443853Rat
2966Khkketohexokinase62544529825455834Rat
1311209Emilin1elastin microfibril interfacer 162545597425463713Rat
2300150Ost4oligosaccharyltransferase complex subunit 4, non-catalytic62547125425472478Rat
1598311Agbl5AGBL carboxypeptidase 562547233325492173Rat
11476312Trnay-gua3transfer RNA tyrosine (anticodon GUA) 362549153925491627Rat
1311324Tmem214transmembrane protein 21462550157525510444Rat
1359297Mapre3microtubule-associated protein, RP/EB family, member 362551380025558876Rat
11517696LOC108351190uncharacterized LOC10835119062552514825527188Rat
11363564LOC108351187uncharacterized LOC10835118762555868925575141Rat
11489826LOC10835118660S ribosomal protein L37 pseudogene62556729625572674Rat
620467Dpysl5dihydropyrimidinase-like 562557510425659422Rat
40940627LOC120103488uncharacterized LOC12010348862559277325597636Rat
41105934LOC120093431small nucleolar RNA SNORA4862569824225698386Rat
1563607Cenpacentromere protein A62570014225711767Rat
1309228Slc35f6solute carrier family 35, member F662572582225737720Rat
61997Kcnk3potassium two pore domain channel subfamily K member 362576148725799153Rat
1584147Cib4calcium and integrin binding family member 462584260525903509Rat
1559683Cimip2cciliary microtubule inner protein 2C62590529425923615Rat
620646Otofotoferlin62592801826024631Rat
1359318Drc1dynein regulatory complex subunit 162602500426059438Rat
1560938Selenoiselenoprotein I62607312726111326Rat
41352920LOC120103489uncharacterized LOC12010348962611151226117344Rat
1305868Adgrf3adhesion G protein-coupled receptor F362613317626144601Rat
620513Hadhbhydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta62615357226187668Rat
620512Hadhahydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha62618796926227605Rat
1597138Garem2GRB2 associated regulator of MAPK1 subtype 262622896526255576Rat
40992611Rbbp4-ps4RB binding protein 4, chromatin remodeling factor, pseudogene 462624756526254076Rat
620879Rab10RAB10, member RAS oncogene family62626708126319739Rat
41285196LOC120103491uncharacterized LOC12010349162635020226357723Rat
621538Kif3ckinesin family member 3C62636709226406033Rat
41378379LOC120103492uncharacterized LOC12010349262640656226425702Rat
1304710Asxl2ASXL transcriptional regulator 262642501726514899Rat
9083598Rpusd4-ps1RNA pseudouridine synthase D4, pseudogene 162646679426470463Rat
1309579Dtnbdystrobrevin, beta62656641826763467Rat
41082100Btf3-ps5basic transcription factor 3, pseudogene 562661607626616536Rat
1303336Dnmt3aDNA methyltransferase 3 alpha62679151726902161Rat
41024468LOC120103494uncharacterized LOC12010349462683790626842773Rat
1565766Yipf4l1Yip1 domain family, member 4 like 162692360526924789Rat
3366Pomcproopiomelanocortin62693984426945666Rat
1310845Efr3bEFR3 homolog B62694743627021113Rat
41181501LOC120103495uncharacterized LOC12010349562697743626981215Rat
1564414Dnajc27DnaJ heat shock protein family (Hsp40) member C2762706871327098449Rat
41044806Cox7b-ps3cytochrome c oxidase subunit 7B, pseudogene 362709286427093103Rat
71009Adcy3adenylate cyclase 362710008927203686Rat
41355253LOC120103497general transcription factor IIH subunit 5-like62710920927114478Rat
1590328Cenpocentromere protein O62720364227218394Rat
1561792Ptrhd1peptidyl-tRNA hydrolase domain containing 162721841727221805Rat
1309046Ncoa1nuclear receptor coactivator 162723260927507992Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
37298D6Rat10521961872366018723879Ratregion
37410D6Rat10717361952217919522352Ratregion
37562D6Rat7715262266434522664497Ratregion
35507D6Rat4317761995589919956076Ratregion
37000D6Rat18015561749359817493753Ratregion
37142D6Rat8025261653614016536392Ratregion
34843D6Rat4014961653624316536392Ratregion
35134D6Rat4125962086642220866681Ratregion
35579D6Rat5415562295900922959164Ratregion
35653D6Rat4213961998791119988050Ratregion
35683D6Rat3913862033877720338915Ratregion
40624D6Rat14824662089406520894315Ratregion
38724D6Rat8623461952513319525367Ratregion
40004D6Rat15720762437076624370973Ratregion
40220D6Rat15614162694691626947057Ratregion
39342D6Rat7423262142019621420428Ratregion
39342D6Rat7423262142019621420428Ratregion
42776D6Rat20917362091964020919815Ratregion
42777D6Rat17247762095268420953163Ratregion
42778D6Rat17113062726160927261739Ratregion
41702D6Rat17924561667266516672914Ratregion
41726D6Rat17824362473073724730980Ratregion
44024D6Got715961700986017010021Ratregion
44025D6Got20418862092140320921591Ratregion
44027D6Got918561998301119983196Ratregion
44029D6Got1516362368006023680221Ratregion
44030D6Got1428562355769923557984Ratregion
44031D6Got1214862315328223153430Ratregion
44032D6Got138862379738623797474Ratregion
44035D6Got1720562587351625873721Ratregion
44041D6Got1915562598850625988661Ratregion
60525D6Got2025962618228926182548Ratregion
60530D6Got2515562712070527120860Ratregion
60516D6Got1613762671126926711406Ratregion
62493D6Uia216462674166526741829Ratregion
1631998D6Wox3022362640509226405315Ratregion
1627594D6Got30217962635170026351879Ratregion
1627875D6Got31710762012853020128637Ratregion
1629641D6Got30011062025811520258220Ratregion
1641053D6Got30110162466795424668055Ratregion
1641537D6Wox3311862576342425763544Ratregion
7206054Kcmf146362436873124369194Ratregion
5038808RH12734421462265636622656580Ratregion
5036302Ppm1g13362517358225173715Ratregion
5039018RH12746518262517701625177198Ratregion
5036845AU04939424961966319419663443Ratregion
5037201RH9203426362512054125120804Ratregion
5028597MHAa84f4.seq17262255033222550504Ratregion
5031408PMC16288P112462576438825764512Ratregion
5031418AU04838817562092139420921569Ratregion
5031572AU04788014562261203222612177Ratregion
5026362RH13191318062545609325456273Ratregion
5028921RH14282721362483912624839339Ratregion
5034388D2S284024662521979825220044Ratregion
5034452BE11844419562681926626819461Ratregion
5026528RH13255920262396028623960488Ratregion
5034640BI28155222062523593725236157Ratregion
5034808AI23317720562479272424792929Ratregion
5035156AI17610416962681923126819400Ratregion
5026978RH13425918362572585225726035Ratregion
5029667BI27777717462709813627098310Ratregion
5029715AW52393515662640610926406265Ratregion
5034882AA85055615162548027325480424Ratregion
5027593AW99038614162517710925177250Ratregion
5032893RH13687219862159219421592392Ratregion
5030465BF39782720562494504624945251Ratregion
8693417rs6488695762130198221301982Ratregion
5025760RH12955518062114141621141596Ratregion
5030891BI30212422062642161726421837Ratregion
5025900RH13013119862218390622184110Ratregion
5031123BF40656413062548369125483821Ratregion
5051995RH9477910662504512725045233Ratregion
5051154RH13447020161669440716694608Ratregion
5054199RH14308711762508413325084250Ratregion
5057372AA80024556262523945925240021Ratregion
5059502BE09710720062480080524801005Ratregion
5058784BF39367210962368714723687256Ratregion
5058784BF39367210962371866723718776Ratregion
5056127RH14419810261689541916895521Ratregion
5056581RH14446126662378171423781980Ratregion
5056477RH14440126762084540020845667Ratregion
5055333RH14374117462112603421126208Ratregion
5059032BF39395416762628538626285553Ratregion
5055681RH14394110062690052726900627Ratregion
5059124BE10288716162622904126229202Ratregion
5050148RH13388918261989565119895833Ratregion
5053259RH14254510162240607722406178Ratregion
5059358BG37763524062690183726902077Ratregion
5057644BI28335620562626720026267405Ratregion
5053849RH14288621362495056024950773Ratregion
5050074RH13384721562360850623608721Ratregion
5050256RH13395119962429862224298821Ratregion
5050388RH13402821961669592816696147Ratregion
5054589RH14331110662570467125704777Ratregion
5054645RH14334366162619880926199470Ratregion
5043474RH13004618262490596124906143Ratregion
5044708RH13075820762694532726945534Ratregion
5044870RH13085119162413317124133362Ratregion
5043828RH13025120762533145025331657Ratregion
5045054RH13095618062171190821712088Ratregion
5045440RH13117918462522029525220479Ratregion
5043858RH13026820062436912424369324Ratregion
5041760RH12904320762384554423845751Ratregion
5046566RH13182728562512097025121255Ratregion
5047752RH13250820862489670524896913Ratregion
5046694RH13190121662359289023593106Ratregion
5049452RH13348918362507995925080142Ratregion
5049466RH13349718262392169023921872Ratregion
5049806RH13369221462375806423758278Ratregion
5042102RH12924119462482582824826022Ratregion
5048586RH13298919862105493621055134Ratregion
5039546RH12776720362123962321239826Ratregion
5042132RH12925818562482582824826013Ratregion
5042398RH12941118062606869626068876Ratregion
5042434RH12943218262504512725045309Ratregion
5040814RH12849818562622750826227692Ratregion
5041124RH12867618162722127027221451Ratregion
5043852RH13026519062055879120558981Ratregion
5072656RH13697615162542240325422554Ratregion
5071984RH13539818362492106124921245Ratregion
5076452RH13918416062607262626072786Ratregion
5075248RH13848417362547493825475111Ratregion
5076820RH1393979362105565321055746Ratregion
5075542RH13865419362497794224978135Ratregion
5074750RH13819714362319809523198238Ratregion
5080678RH14171820262494757524947777Ratregion
5077232RH13963819262399156923991761Ratregion
5079514RH14104218762395942123959608Ratregion
5076738RH13935018062395883023959010Ratregion
5077642RH13987420362549982325500026Ratregion
5079904RH14127019262164051021640702Ratregion
5079990RH14131918262163951321639695Ratregion
5080042RH14134918462002985420030038Ratregion
5080188RH14143615062570488025705030Ratregion
5079120RH14074714662642607626426222Ratregion
5070604RH13459719562720376927203964Ratregion
5070662RH13463218562615371226153897Ratregion
5070682RH13464349262512027125120763Ratregion
5070860RH13474721262518859425188806Ratregion
5072944RH13714418462528452125284705Ratregion
5078710RH1405059162399166123991752Ratregion
5071548RH13514619962527047825270677Ratregion
5071612RH13518321062689611826896328Ratregion
5070866RH13475018362488069024880873Ratregion
5072222RH13672413362359741323597546Ratregion
5072292RH1367646462240610822406172Ratregion
5072454RH13685918462522058025220764Ratregion
5074830RH13824313462391028623910420Ratregion
5071704RH13523619562430747024307665Ratregion
5065066BF40560810062669681226696912Ratregion
5066716AU04819315062313782023137970Ratregion
8693335rs10743921461753252117532521Ratregion
8693336rs10759243562401195224011952Ratregion
5067848AU04749923361932995619330189Ratregion
5068346AU04720213162202377222023903Ratregion
5068434AU04714715261810055618100708Ratregion
5070141RH9449616262693938926939551Ratregion
5069568AU04640916962726159727261766Ratregion
5070356AW04520113462544346225443596Ratregion
5069268AU04660824862232259422322670Ratregion
5063516BF40430610262122176221221864Ratregion
5063678BE10795916762700765727007824Ratregion
5063742BF4049579862700839627008494Ratregion
5065302AI5351369262619149526191587Ratregion
5065728BE10972915362521956625219719Ratregion
5062734AW53413617062390006123900231Ratregion
5065832AI04525214962570459725704746Ratregion
5065950AA92506415762123407121234228Ratregion
5061956BI29444418062534875825348938Ratregion
5062048BE11269316962570341525703584Ratregion
5063536BF40432319062642574526425935Ratregion
5060576BE11042320662522400125224207Ratregion
5064106BE12061618462145645121456635Ratregion
5060708BE10434315662681283826812994Ratregion
5064358BI30208617162449305824493229Ratregion
5064428BI30219017961815036618150545Ratregion
5061052BG37903713562548471625484851Ratregion
5066112BE11686722562694769826947923Ratregion
5066156BF41366019462517626625176460Ratregion
5061292BE11148315962570022025700379Ratregion
5063048BE11364116162687059826870759Ratregion
5064666BF39953816962642559926425768Ratregion
5066354PMC16288P236962576414325764512Ratregion
5061438BE11176115162222899422229145Ratregion
5063304BF39871716962688090926881078Ratregion
5061574BF39672319162690129126901482Ratregion
5082395BE11930315762609273826092895Ratregion
5087386BM38968015062498268124982831Ratregion
5083185BF39094819862640851026408708Ratregion
5083477AI5473939162541941325419504Ratregion
5083493BE10025521462618726826187482Ratregion
5083593BE10078211162002978220029893Ratregion
5083635BE10094315162438919524389346Ratregion
5088615AU04867520062631399026314190Ratregion
5081713BF40848723362416210124162334Ratregion
5080954RH14187915062640746826407618Ratregion
5085756BQ19873120362542596425426167Ratregion
5082563BE11971015062494387324944023Ratregion
5086040Cgr1119262544348025443672Ratregion
5082789BF39011520262359939823599600Ratregion
5082985BF39057416962700469127004860Ratregion
5081214RH14203019762408926124089458Ratregion
5086671AI41257815962436339324363552Ratregion
5503274UniSTS:23769822561988832719888552Ratregion
5503835PPM1G_785753362517319725173730Ratregion
5504312D12S1229E12362622417626224299Ratregion
5505492PCU64649100661791096217911968Ratregion
5505905UniSTS:49603872162718620427186925Ratregion
5505907UniSTS:4960359162517209725172188Ratregion
5506336MARC_49992-49993:1124119588:235962542128425421642Ratregion
5506344UniSTS:47890414262566010825660250Ratregion
5506519ADCY3_103481962720279627203615Ratregion
5506927G5411416462517343825173602Ratregion
5506569RAB10_104588262626683826267720Ratregion
5507249AI6395808462709809327098176Ratregion
5500505RH12659020162128221821282416Ratregion
5500695RH8059223162723462727234858Ratregion
5500459MARC4015-401643562529339225293827Ratregion
5500509RH12691424962114139521141644Ratregion
5501736MARC_10279-10280:998924900:1100462675511826756122Ratregion
5501878MARC_16687-16688:1017861800:176562523163725232402Ratregion
5502002MARC_23457-23458:1027109061:146862547283525473303Ratregion
5502026MARC_24055-24056:1030023107:135862512425125124609Ratregion
5502694Emilin1131262546011125461423Ratregion
Position Markers

Flank 1: (D6Rat80)
Rat AssemblyChrPosition (strand)Source
GRCr8622,288,257 - 22,288,509 (+)Marker Load Pipeline
mRatBN7.2616,536,140 - 16,536,392 (-)MAPPER
Rnor_6.061,120,393 - 1,120,644NCBI
Rnor_5.061,111,498 - 1,111,749UniSTS
RGSC_v3.461,301,952 - 1,302,204RGD
RGSC_v3.461,301,953 - 1,302,204UniSTS
RGSC_v3.161,301,953 - 1,302,204RGD
Celera616,183,547 - 16,183,798UniSTS
RH 3.4 Map623.9UniSTS
RH 3.4 Map623.9RGD
RH 2.0 Map6122.3RGD
SHRSP x BN Map618.3999RGD
Cytogenetic Map6q11UniSTS
Cytogenetic Map6q14UniSTS
Peak: (D6Rat80)
Rat AssemblyChrPosition (strand)Source
GRCr8622,288,257 - 22,288,509 (+)Marker Load Pipeline
mRatBN7.2616,536,140 - 16,536,392 (-)MAPPER
Rnor_6.061,120,393 - 1,120,644NCBI
Rnor_5.061,111,498 - 1,111,749UniSTS
RGSC_v3.461,301,952 - 1,302,204RGD
RGSC_v3.461,301,953 - 1,302,204UniSTS
RGSC_v3.161,301,953 - 1,302,204RGD
Celera616,183,547 - 16,183,798UniSTS
RH 3.4 Map623.9UniSTS
RH 3.4 Map623.9RGD
RH 2.0 Map6122.3RGD
SHRSP x BN Map618.3999RGD
Cytogenetic Map6q11UniSTS
Cytogenetic Map6q14UniSTS
Flank 2: (D6Rat171)
Rat AssemblyChrPosition (strand)Source
GRCr8632,981,089 - 32,981,219 (+)Marker Load Pipeline
mRatBN7.2627,261,609 - 27,261,739 (+)MAPPER
Rnor_6.0628,706,592 - 28,706,721NCBI
Rnor_5.0638,512,104 - 38,512,233UniSTS
RGSC_v3.4627,253,868 - 27,253,998RGD
RGSC_v3.4627,253,869 - 27,253,998UniSTS
RGSC_v3.1627,256,821 - 27,256,951RGD
Celera626,732,958 - 26,733,087UniSTS
SHRSP x BN Map625.1499UniSTS
SHRSP x BN Map625.1499RGD
Cytogenetic Map6q14UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)6796416721301982Rat
8693645Alc31Alcohol consumption QTL 313.70.038drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61753252124011952Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)6796416721301982Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type recombinantinbred