Bvd3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bvd3 (Brain ventricular dilatation QTL 3) Rattus norvegicus

Symbol: Bvd3
Name: Brain ventricular dilatation QTL 3
RGD ID: 1354656
Trait: brain ventricle morphology trait   (VT:0000822)    
Measurement Type: hydrocephalus severity score   (CMO:0001881)    
LOD Score: 3.64
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21169,446,070 - 82,846,715RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01172,720,029 - 86,994,795RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01175,797,786 - 90,087,579RGDRnor5.0
RGSC_v3.41177,341,660 - 84,841,212RGDRGSC3.4
RGSC_v3.11177,416,241 - 84,881,809RGD
Cross Type: backcrosstoH-Tx/Hcj
Strains Crossed: F344/NHsd HTX/Hcj 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
F344/NHsd  (IEA)
HTX/Hcj  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic analysis of inherited hydrocephalus in a rat model. Jones HC, etal., Exp Neurol 2004 Nov;190(1):79-90.
2. Genome-wide linkage analysis of inherited hydrocephalus in the H-Tx rat. Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
Related QTLs

Related QTL Description Reference
Bvd6 sub_region RGD:68196


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2499Dgkgdiacylglycerol kinase, gamma117838421278579158Rat
68422Cldn1claudin 1117442156974436728Rat
68431Cldn5claudin 5118221282282214248Rat
2724Gp5glycoprotein V (platelet)117044361370446705Rat
70551Lrrc15leucine rich repeat containing 15117046977570484268Rat
619886Tra2btransformer 2 beta117878888078807252Rat
69293Fetubfetuin B117808215878093022Rat
2137Apodapolipoprotein D116943126169452306Rat
3761Sstsomatostatin117695689676958173Rat
2361Clcn2chloride voltage-gated channel 2118019774180211657Rat
2379Comtcatechol-O-methyltransferase118256805282587642Rat
2980Kng2kininogen 2117791387677936247Rat
727841Ccdc50coiled-coil domain containing 50117333279873395333Rat
620322Cldn16claudin 16117429029874309588Rat
2893Il1rapinterleukin 1 receptor accessory protein117406299974199530Rat
620213Masp1MBL associated serine protease 1117733479477405271Rat
727971Klhl24kelch-like family member 24118084362180877693Rat
727977Uts2burotensin 2B117342438573439429Rat
619822Ufd1ubiquitin recognition factor in ER associated degradation 1118216161882185107Rat
61960Txnrd2thioredoxin reductase 2118251999682568156Rat
620135Ap2m1adaptor related protein complex 2 subunit mu 1118035530780364218Rat
62081Hes1hes family bHLH transcription factor 1117070576370708176Rat
621099Ppp1r2protein phosphatase 1, regulatory (inhibitor) subunit 2116947267669494468Rat
621763Septin5septin 5118237360182379393Rat
619808Hrghistidine-rich glycoprotein117805448878069402Rat
621441Ehhadhenoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase117924192779275173Rat
708411Camk2n2calcium/calmodulin-dependent protein kinase II inhibitor 2118028970280290829Rat
1305170Cpn2carboxypeptidase N subunit 2117048608070495937Rat
628748Adipoqadiponectin, C1Q and collagen domain containing117772191277735644Rat
708380Eif2b5eukaryotic translation initiation factor 2B subunit epsilon118039443380404468Rat
620810Rtn4rreticulon 4 receptor118284458582869012Rat
620863Tp63tumor protein p63117483885875049764Rat
621050Gp1bbglycoprotein Ib platelet subunit beta118237821682379393Rat
1304568P3h2prolyl 3-hydroxylase 2117463426774775422Rat
620181Chrdchordin118017199480181166Rat
1307521Klhl6kelch-like family member 6118097091781010593Rat
70913Abcc5ATP binding cassette subfamily C member 5118047380980567257Rat
1306365Dgcr8DGCR8 microprocessor complex subunit118270467382737251Rat
708378Senp2SUMO specific peptidase 2117898142979018274Rat
1305752Psmd2proteasome 26S subunit ubiquitin receptor, non-ATPase 2118024836480258991Rat
1307373Dnajb11DnaJ heat shock protein family (Hsp40) member B11117815175078168259Rat
1307734Tbx1T-box transcription factor 1118240927582419058Rat
620163Fgf12fibroblast growth factor 12117199704972564965Rat
1306655ArvcfARVCF, delta catenin family member118258813782645805Rat
1306004Alg3ALG3, alpha-1,3- mannosyltransferase118030048780306014Rat
1304790Fam43afamily with sequence similarity 43, member A117012825370131401Rat
1305602Ephb3Eph receptor B3117984066879859467Rat
1309089Lsg1large 60S subunit nuclear export GTPase 1117013291970168526Rat
1310521Ranbp1RAN binding protein 1118274260382750836Rat
1560559RGD1560559similar to RIKEN cDNA 2310042E22117998898479990143Rat
1309443Vps8VPS8 subunit of CORVET complex117940223679634234Rat
1359376Kng1kininogen 1117781275777835555Rat
1310468Abcf3ATP binding cassette subfamily F member 3118034047680352211Rat
1333751Olr1565olfactory receptor 1565118124605081246994Rat
1559643Mb21d2Mab-21 domain containing 2117182574871924770Rat
1310418Trmt2atRNA methyltransferase 2 homolog A118273768982742423Rat
1333712Olr1567olfactory receptor 1567118135126881352206Rat
1333622Olr1566olfactory receptor 1566118127860581279546Rat
1333362Olr1569olfactory receptor 1569118140019781401135Rat
1309225Eif4a2eukaryotic translation initiation factor 4A2117776412677770810Rat
1306226Tprg1tumor protein p63 regulated 1117532247075449907Rat
1309485Plaat1phospholipase A and acyltransferase 1117151749271537142Rat
1308154Xxylt1xyloside xylosyltransferase 1116965848169790938Rat
1306927Atp13a4ATPase 13A4117122219671359933Rat
1306974Rtp4receptor (chemosensory) transporter protein 4117723734177249194Rat
1306792Atp13a5ATPase 13A5117137638871515789Rat
1309345Bcl6BCL6, transcription repressor117685409076877389Rat
1308834Dvl3dishevelled segment polarity protein 3118036544680382641Rat
1306191Parlpresenilin associated, rhomboid-like118059405980620506Rat
1309604Tbccd1TBCC domain containing 1117816838678205314Rat
2075Ahsgalpha-2-HS-glycoprotein117811790378145956Rat
1310535LppLIM domain containing preferred translocation partner in lipoma117578732676426646Rat
1308875Zdhhc8zinc finger DHHC-type palmitoyltransferase 8118275511082769280Rat
1307928Lamp3lysosomal-associated membrane protein 3118115349181224643Rat
1310348Tango2transport and golgi organization 2 homolog118264597882692574Rat
1309590Etv5ETS variant transcription factor 5117860861878666221Rat
1305614Igf2bp2insulin-like growth factor 2 mRNA binding protein 2117887440278974392Rat
1306144Eif4g1eukaryotic translation initiation factor 4 gamma 1118022191980241958Rat
1310142Rfc4replication factor C subunit 4117774964277764123Rat
1333258Olr1570olfactory receptor 1570118148697881487919Rat
1563782Ccdc188coiled-coil domain containing 188118276973582772062Rat
1562939Acap2ArfGAP with coiled-coil, ankyrin repeat and PH domains 2116953848769654156Rat
1303039Ece2endothelin-converting enzyme 2118025913080299685Rat
1303110Ostnosteocrin117344216773478577Rat
1562415RGD1562415similar to 40S ribosomal protein S26117035922770359796Rat
1563535Myl6-ps5myosin light chain 6, pseudogene 5117644843876448787Rat
1564585Ctdsp1-ps1CTD small phosphatase 1, pseudogene 1117713290877133863Rat
1563956RGD1563956similar to 60S ribosomal protein L12118016920580169831Rat
1561203Polr2hRNA polymerase II, I and III subunit H118019201780197468Rat
1563170Gmncgeminin coiled-coil domain containing117383625573847698Rat
1562339RGD1562339RGD1562339117934579279396140Rat
1560980Rtp1receptor (chemosensory) transporter protein 1117742298277425498Rat
708423Opa1OPA1, mitochondrial dynamin like GTPase117110810071185170Rat
70955B3gnt5UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5118114110281153206Rat
1561227Map3k13mitogen-activated protein kinase kinase kinase 13117909408779235181Rat
1559972RGD1559972similar to ribosomal protein L27a117878105878781581Rat
1334380Olr1568olfactory receptor 1568118137588681376824Rat
1565444Mrpl40mitochondrial ribosomal protein L40118213339882139234Rat
1586963Cyp2ab1cytochrome P450, family 2, subfamily ab, polypeptide 1118058263380591217Rat
3676St6gal1ST6 beta-galactoside alpha-2,6-sialyltransferase 1117752683777653474Rat
1564491Vwa5b2von Willebrand factor A domain containing 5B2118030606780323220Rat
1584950Hirahistone cell cycle regulator118202446982133212Rat
1560102Map6d1MAP6 domain containing 1118073414880740377Rat
1565541Elob-ps6elongin B, pseduogene 6117061778170618341Rat
1584953Hspa8-ps7heat shock protein family A (Hsp70) member 8, pseudogene 7118125631581258243Rat
1584955Prkaa1-ps2protein kinase AMP-activated catalytic subunit alpha 1, pseudogene 2117788197177883466Rat
1563737Tmem44transmembrane protein 44117018112070216958Rat
1565722Rtp2receptor (chemosensory) transporter protein 2117691790476930760Rat
1566176Yeats2YEATS domain containing 2118074313480829253Rat
1585930Tiprl-ps1TOR signaling pathway regulator, pseudogene 1118013607080137293Rat
1589781Eef1a1-ps11eukaryotic translation elongation factor 1 alpha 1, pseudogene 11117363323773634788Rat
1590881Atp13a3ATPase 13A3117036499870442005Rat
1590533Snw1-ps3SNW domain containing 1, pseudogene 3117974307079744816Rat
1583711Ccnb1ip1-ps2cyclin B1 interacting protein 1, pseudogene 2117794408177945086Rat
1590724Hnrnph1-ps4heterogeneous nuclear ribonucleoprotein H1, pseudogene 4117528348675307166Rat
1561572Sf3a2-ps1splicing factor 3A subunit 2, pseudogene 1117576854875769907Rat
1587483Crygscrystallin, gamma S117820717078212273Rat
1590928Cdc45cell division cycle 45118218542782210630Rat
1596124Chchd2l2-ps3coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 3116948069869481154Rat
1592849Liphlipase H117903222979081625Rat
1595717LOC498122similar to CG15908-PA118215599282160235Rat
1594590Kng2l1kininogen 2-like 1117797879578002976Rat
1596034Cyld-ps2CYLD lysine 63 deubiquitinase, pseudogene 2117170499271713933Rat
1591692Tmem41atransmembrane protein 41a117908400579090613Rat
1594165Gnb1lG protein subunit beta 1 like118242530182507836Rat
1594108Ldha-ps15lactate dehydrogenase A, pseudogene 15117802245478023501Rat
1588683Psme3-ps4proteasome activator subunit 3, pseudogene 4117877350878774583Rat
1594092LOC681544similar to histidine-rich glycoprotein117803937178049353Rat
1598124Rps7-ps3ribosomal protein S7, pseudogene 3118043776080438362Rat
1594670Pabpc4-ps2poly(A) binding protein, cytoplasmic 4, pseudogene 2117439745074399183Rat
2319156Mast2-ps1microtubule associated serine/threonine kinase 2, pseudogene 1117749966677502443Rat
2318135LOC100362453serine/threonine-protein phosphatase 2A catalytic subunit alpha-like118227828882280159Rat
2318744Rps15al2ribosomal protein S15A-like 2118040865680409118Rat
2318248LOC10036583940S ribosomal protein S3a-like117614280076143706Rat
2318335Hmgn2-ps1high mobility group nucleosomal binding domain 2, pseudogene 1117832119978321970Rat
2319568LOC100361706lambda-chain C1-region-like118194796681949822Rat
2322069Fam131afamily with sequence similarity 131, member A118021157780221527Rat
2322856Tmem207transmembrane protein 207117425104274270180Rat
2322462Rtraf-ps1RNA transcription, translation and transport factor, pseudogene 1117506032475216590Rat
2321725Nudt2-ps1nudix hydrolase 2, pseudogene 1117979752679798400Rat
2322514Abt1-ps1activator of basal transcription 1, pseudogene 1117456872274569685Rat
2322532Il13ra1-ps1interleukin 13 receptor subunit alpha 1, pseudogene 1117125502371258710Rat
2325380Mir185microRNA 185118266471682664795Rat
2325461Mir28microRNA 28117597552375975608Rat
2325484Mir1224microRNA 1224118030690280306986Rat
6489863LOC100911962uncharacterized LOC100911962117824763278249722Rat
6484481LOC680329immunoglobulin lambda-like polypeptide 5-like118155468081911935Rat
6499341LOC100910319uncharacterized LOC100910319117581962075823992Rat
7489022Mir1306microRNA 1306118270965182709723Rat
7489032Mir6323microRNA 6323118105206581052169Rat
7525828LOC102555338uncharacterized LOC102555338118277201982781088Rat
7542563LOC102548576uncharacterized LOC102548576117339851173403897Rat
7542669LOC102554403uncharacterized LOC102554403117064419670656791Rat
7508589LOC102552083uncharacterized LOC102552083117126345071269923Rat
7503836Ewsr1-ps3EWS RNA-binding protein 3118099500380997069Rat
7646081LOC102552752uncharacterized LOC102552752117731201777335762Rat
7654032LOC102547398uncharacterized LOC102547398118046153480468553Rat
7656435LOC102553356uncharacterized LOC102553356117671128176721105Rat
7595638LOC102553680uncharacterized LOC102553680116980454269837672Rat
7642671LOC102554451uncharacterized LOC102554451117569607875714051Rat
7644981LOC102549362uncharacterized LOC102549362117765253077658971Rat
7555728LOC102548792uncharacterized LOC102548792117018599870189950Rat
7568858LOC102553750uncharacterized LOC102553750117659112176596688Rat
7569107LOC102547306uncharacterized LOC102547306117065946470675176Rat
7573197LOC102551589uncharacterized LOC102551589118025909080266788Rat
7546617LOC102550088uncharacterized LOC102550088118005471980078477Rat
7585592LOC102547530uncharacterized LOC102547530117082178270842973Rat
7735872LOC102557186uncharacterized LOC102557186117340667873420224Rat
7750754LOC102549085uncharacterized LOC102549085117006936870115798Rat
7732114Eef1akmt4EEF1A lysine methyltransferase 4118029211380299686Rat
7737779LOC102551795uncharacterized LOC102551795118035226380355743Rat
7738503LOC102552590uncharacterized LOC102552590117837728378402994Rat
7741708LOC102551647uncharacterized LOC102551647118032248680342460Rat
9097663LOC103690765extensin-like117060818570608934Rat
9082951Ahcy-ps11adenosylhomocysteinase, pseudogene 11117748342577484973Rat
9251123LOC103690608uncharacterized LOC103690608117664822476657835Rat
9338791LOC10369065860S ribosomal protein L15 pseudogene118043419480434834Rat
9432497LOC103690757macrophage-capping protein pseudogene117464701374710453Rat
10395319LpposLIM domain containing preferred translocation partner in lipoma, opposite strand117642541576426512Rat
11373170LOC108352383uncharacterized LOC108352383117618324776193533Rat
11449348LOC108352384uncharacterized LOC108352384117934144479345742Rat
11433872LOC10835239960S ribosomal protein L26-like 1 pseudogene117196655971967694Rat
11471078LOC108352357uncharacterized LOC108352357117800522178012389Rat
11427810LOC10835236160S ribosomal protein L21 pseudogene118206510682068274Rat
11453386LOC108352352uncharacterized LOC108352352117088685470910339Rat
11426389LOC108352376glyceraldehyde-3-phosphate dehydrogenase pseudogene117170032471701564Rat
11407001Trnam-cau3transfer RNA methionine (anticodon CAU) 3117867870078678771Rat
11402614LOC108352385uncharacterized LOC108352385117942761479433062Rat
11382779LOC10835235160S ribosomal protein L17 pseudogene117015399470155281Rat
11486221LOC108352401uncharacterized LOC108352401118072351080725908Rat
41203638LOC120095698uncharacterized LOC120095698118008421180089447Rat
41248894LOC120095725U7 small nuclear RNA117641296876413034Rat
41281933LOC120095727small nucleolar RNA SNORA63117776800277768126Rat
41323858LOC120095572uncharacterized LOC120095572117362044073629726Rat
41169533LOC120095684uncharacterized LOC120095684117074016670743401Rat
41286369LOC120095685uncharacterized LOC120095685117363323773654430Rat
41287362LOC120095689uncharacterized LOC120095689117683813476853989Rat
41386553LOC120095813U6 spliceosomal RNA118146047781460584Rat
41091877LOC120095680uncharacterized LOC120095680116998141070023987Rat
41116675LOC120095734small nucleolar RNA SNORA13118062492380625057Rat
41118012LOC120095687uncharacterized LOC120095687117661705876630585Rat
41145464Snord2small nucleolar RNA, C/D box 2117776947577769543Rat
41209682LOC120095700uncharacterized LOC120095700118102557781058687Rat
41259569Snora81small nucleolar RNA, H/ACA box 81117776757977767756Rat
41260492NEWGENE_6576114transfer RNA threonine (anticodon AGU)118091804980918121Rat
41261524LOC120095676uncharacterized LOC120095676116954411469561971Rat
41177202LOC120095570uncharacterized LOC120095570117024327670245083Rat
41178581LOC120095678uncharacterized LOC120095678116975363169759747Rat
41213514LOC120095699uncharacterized LOC120095699118041571780454559Rat
41123245Rpl10-ps11ribosomal protein L10, pseudogene 11117446751274475789Rat
41192302LOC120095726small nucleolar RNA SNORA63117776665477766782Rat
41216067LOC120095733small nucleolar RNA SNORA4117776632577766464Rat
41267227LOC120095702uncharacterized LOC120095702118236127882369783Rat
41183084LOC120095792U2 spliceosomal RNA117248655372486710Rat
41291360H3f3a-ps2H3.3 histone A, pseudogene 2117780108777801454Rat
41291498LOC120095775small nucleolar RNA SNORA77118274996782750091Rat
41162418LOC120095818U6 spliceosomal RNA117997194179972044Rat
41107307LOC120095683uncharacterized LOC120095683117035450370358842Rat
41197952LOC120095747small nucleolar RNA SNORA17117749744877497579Rat
41376596Snw1-ps4SNW domain containing 1, pseudogene 4117974481679745444Rat
41275152LOC120095761small nucleolar RNA SNORA17118148185781481980Rat
41352856LOC120095751U1 spliceosomal RNA118016192980162092Rat
40947157Rpl13a-ps5ribosomal protein L13A, pseudogene 5117708077777081566Rat
40973363Snord66small nucleolar RNA, C/D box 66118023015280230226Rat
40973835LOC120095688uncharacterized LOC120095688117674451576746777Rat
41341100Or2l13l-ps2olfactory receptor family 2 subfamily L member 13 like, pseudogene 2118130916281310272Rat
40953398LOC120095703uncharacterized LOC120095703118249327482494166Rat
40955254Ccnb1ip1-ps4cyclin B1 interacting protein 1, pseudogene 4117780357577804448Rat
40999098LOC120095692uncharacterized LOC120095692117869188878709582Rat
40960446LOC120095677uncharacterized LOC120095677116977949969782866Rat
40962148LOC120095675uncharacterized LOC120095675116946633369470131Rat
40991205LOC120095682uncharacterized LOC120095682117032832870335873Rat
40943335LOC120095770small nucleolar RNA SNORA17118203589182035985Rat
40995627LOC120095681uncharacterized LOC120095681117023491270238937Rat
41024616LOC120095686uncharacterized LOC120095686117406563674081511Rat
41048357LOC120095690uncharacterized LOC120095690117765910477672704Rat
41048783LOC120095774small Cajal body-specific RNA 14118261297182613105Rat
41315717LOC120095697uncharacterized LOC120095697118003073880054940Rat
41257003LOC120095695uncharacterized LOC120095695117967834779683252Rat
41152260LOC120095783U1 spliceosomal RNA118016823680168390Rat
41335939LOC120095694uncharacterized LOC120095694117936213779377264Rat
41297945Prkaa1-ps1protein kinase AMP-activated catalytic subunit alpha 1, pseudogene 1117788807377897420Rat
41336808LOC120095679uncharacterized LOC120095679116993900569958053Rat
41035465LOC120095763small nucleolar RNA SNORA17117591194175912071Rat
41061597LOC120095691uncharacterized LOC120095691117849171778496661Rat
41301821LOC120095571uncharacterized LOC120095571117034029270344905Rat
41235885LOC120095555uncharacterized LOC120095555117217775072185954Rat
41042846Ewsr1-ps5EWS RNA-binding protein 5118099316280996036Rat
41239643LOC120095704uncharacterized LOC120095704118277388782783904Rat
41241227LOC120095693small ubiquitin-related modifier 2-like117916345779164088Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10375D11Mgh1148118256655382566702Ratregion
10376D11Wox6173118256654582566718Ratregion
11291D11Mgh7161117757016877570330Ratregion
11292D11Got72144117757022577570369Ratregion
11343D11Wox2156117695623676956380Ratregion
11344D11Arb1223117695623576956458Ratregion
37512D11Rat50236118284646682846715Ratregion
37096D11Rat92149117410677274106899Ratregion
37942D11Rat46178117885132978851519Ratregion
34912D11Rat30167117449920974499378Ratregion
35859D11Rat1166118245082582450994Ratregion
35953D11Rat37164117211751372117673Ratregion
38284D11Rat47211117063319470633407Ratregion
38382D11Rat45224118118429181184507Ratregion
40550D11Rat60171117161796871618130Ratregion
40678D11Rat59213117130873871308949Ratregion
38672D11Rat51239117026245170262681Ratregion
40048D11Rat58164117687881276878990Ratregion
40082D11Rat82173117847461278474785Ratregion
38964D11Rat42102117688121076881304Ratregion
41952D11Arb2199117747324577473444Ratregion
41256D11Rat61165116944607069446234Ratregion
41482D11Rat57170117420421074204382Ratregion
42956D11Rat105205117113489671135104Ratregion
42957D11Rat104237117429126074291612Ratregion
42958D11Rat103225117937185779372066Ratregion
42959D11Rat90207117973014479730349Ratregion
42376D11Rat117115117648357876483653Ratregion
40870D11Rat55231117946973379469960Ratregion
40938D11Rat56195117571807775718276Ratregion
41612D11Rat54138118219674082196868Ratregion
41692D11Rat89219118216900182169223Ratregion
41756D11Rat91234118097033780970606Ratregion
44847D11Got73300117885134078851641Ratregion
44849D11Got78198117873113978731336Ratregion
44851D11Wox7266117406199274062268Ratregion
44852D11Got70247117684170876841952Ratregion
44855D11Got66169117444867174448840Ratregion
44857D11Got62162117211205372112215Ratregion
44858D11Got63206117171787371718079Ratregion
59998D11Got61149117208094572081090Ratregion
59999D11Got65117117471376974713884Ratregion
60000D11Got67118117449688874497006Ratregion
60001D11Got6988117591732075917412Ratregion
60002D11Got71170117684175576841925Ratregion
60003D11Got74359117838573978386094Ratregion
60004D11Got75210117826250378262713Ratregion
60005D11Got7994118003914180039232Ratregion
60006D11Got80202118097522980975431Ratregion
60007D11Got81218118212658482126804Ratregion
66624D11Mco1240117237393272374168Ratregion
67350D11Arb13183117245397172454154Ratregion
1630206D11Wox15117483978074839933Ratregion
1627941D11Got112206117246224372462449Ratregion
1628497D11Uwm1174118062455880624732Ratregion
1636528D2Got332131117651632676516356Ratregion
1634138D11Cebr1265117842454578424810Ratregion
1634385D11Wox16236118020845080208686Ratregion
2325914D6Hmgc2188117623806776238098Ratregion
7206710UniSTS:4804741173118028968480290857Ratregion
7205898UniSTS:4856331148118028970880290856Ratregion
7193135Ephb3179117984124279841421Ratregion
7192369Ephb31434117984976679851200Ratregion
7206438Cldn11090117443540074436490Ratregion
5035859PMC24644P1786117695715076957936Ratregion
5038870RH127380185118227988482280069Ratregion
5038870RH127380185118227988482280069Ratregion
5039000RH127455193117752706577527258Ratregion
5036591AU048531123117471376474713885Ratregion
5035512EST9C6137118275064182750778Ratregion
5035540Dgcr8439118270963882710077Ratregion
5035604T03659221118024858880248950Ratregion
5033949RH140729212117737396077374172Ratregion
5026100RH130910201117805462178054822Ratregion
5028579AA959454242117578732775787569Ratregion
7206152UniSTS:532277491118036780880368299Ratregion
5031486AU048165253117781902377819275Ratregion
5034071RH141250180118013447080134650Ratregion
5031544AU047979278117685607876856356Ratregion
5031818AU047052153116990252769902675Ratregion
5034390RH118405153118030575380305906Ratregion
5026572RH132726204118074337580743579Ratregion
5029359RH144497206118268436482684570Ratregion
5034752AI599309166117110858671108752Ratregion
5034766AI104888250118087377180874021Ratregion
5026808RH133611150117972528779725437Ratregion
5027077RH70256194117984074079840934Ratregion
5032477RH126681213117879516678795379Ratregion
5035334AW529860192117208500272085194Ratregion
5035380BE115254164118209172882091892Ratregion
5035190AW528025186118039529280395595Ratregion
5035202AW535442151117897410778974258Ratregion
5035228BM390883154118066368080663834Ratregion
5027501X5146895117695803876958134Ratregion
5032977RH137176204118034057680340780Ratregion
5027647BB16507674117820047878200552Ratregion
5025142RH126722203117578743175787634Ratregion
5025292RH127760186117845908878459274Ratregion
5025602RH128953187116945210969452296Ratregion
5028077U4146586117687636376876449Ratregion
5028111Z49086200117984074079840940Ratregion
5028179D16Mit101157117710697677107133Ratregion
5028187D16Mit229105116948368369483788Ratregion
5025616RH129005211117738553777385748Ratregion
5025800RH129723220117752691377527133Ratregion
5051901RH94723169118258739382587563Ratregion
5051917RH94733144117857675978576903Ratregion
5056437RH144378161118026329180263452Ratregion
5054021RH142985194118250344982503643Ratregion
5054059RH143007164117339870173398865Ratregion
5057470AA858773207116949426669494473Ratregion
5052163RH94876259117695750776957766Ratregion
5055459RH143813175118073462380734798Ratregion
5054785RH143424108118021801280218120Ratregion
5057894BI277248166118024850080248666Ratregion
5058540AI555746203118056696880567171Ratregion
5058572BI290823177117578948475789661Ratregion
5058624AA899041180116965385369654033Ratregion
5056829RH144604181118238087682381057Ratregion
5055453RH143810265118050603180506296Ratregion
5059044BE102735203118266236682662570Ratregion
5049818RH133699185117021660570216908Ratregion
5058510AW523989170117921945979219629Ratregion
5059086BF387449156117943083079430986Ratregion
5050156RH133894187117408102774082650Ratregion
5059248BF387879153118018877280188925Ratregion
5059324BG377348150117747731677477466Ratregion
5057786BI277102184117333291873333102Ratregion
5050664RH134187202117122643971227134Ratregion
5053861RH142893109117230265372302765Ratregion
5050990RH134374203117808220378082406Ratregion
5051094RH134436181117776420977764390Ratregion
5051302RH134555185118216191782162102Ratregion
5054211RH143094142118021220380212345Ratregion
5051655AW554757134117898316878983302Ratregion
5044120RH130421208117642695876427166Ratregion
5044170RH130450206118191511681915322Ratregion
5044170RH130450206118194952381949729Ratregion
5043282RH129936220117774659577746815Ratregion
5041146RH128689187118035531480355501Ratregion
5045800RH131386193117642629676426489Ratregion
5044674RH130739188118030608680306274Ratregion
5044682RH130743198118084370480843902Ratregion
5044688RH130747197117578754475787741Ratregion
5046370RH131714217117032848670328703Ratregion
5044344RH130549206118243289582433101Ratregion
5044360RH130558219117824787978248098Ratregion
5047452RH132336216116964864669648862Ratregion
5045822RH131398184118122160381221787Ratregion
5049088RH133279213117723821277238425Ratregion
5046598RH131845188118105834781058536Ratregion
5048034RH132670206117939570979395915Ratregion
5048092RH132703195118074337580743570Ratregion
5049372RH133443184118162352881623712Ratregion
5049382RH133449152118237923482379386Ratregion
5047066RH132114181117813234278132523Ratregion
5048210RH132771213117135966671359879Ratregion
5049660RH133608209117611264376112852Ratregion
5041962RH129159215118019370880193923Ratregion
5041978RH129168192117898282378983015Ratregion
5047310RH132254186117940225179402437Ratregion
5047412RH132313210118046156780461777Ratregion
5039898RH127971220117695784676958066Ratregion
5042436RH129433193117151754071517733Ratregion
5042542RH129497217117909035679090573Ratregion
5042708RH129598165118101006181010226Ratregion
5039896RH127970186118036554780365733Ratregion
5040022RH128045194118258717982587373Ratregion
5040938RH128570188118213745282137640Ratregion
5041058RH128639194118074204880742242Ratregion
5041544RH128918182118252001582520197Ratregion
5074948RH138311158118237997882380136Ratregion
5071946RH135376200117888801078888210Ratregion
5072126RH136666203117866444678664649Ratregion
5074072RH137804129117202536972025498Ratregion
5075310RH138521153117635083576350988Ratregion
5075786RH138796242117073033170730573Ratregion
5072460RH136862189118273778382737972Ratregion
5076052RH138951155118270422082704375Ratregion
5080616RH141682184116979059569790779Ratregion
5080708RH141735198117897367478973872Ratregion
5077298RH139676217117857879978579016Ratregion
5078158RH140177204117927461779274821Ratregion
5078122RH140156201117256254772562748Ratregion
5080100RH141383187117579022275790409Ratregion
5080124RH141397151118029211280292263Ratregion
5070870RH134753190117939452379394713Ratregion
5072930RH137136181118243478082434961Ratregion
5080276RH141486185117898148478981669Ratregion
5080312RH141507205117998891979989119Ratregion
5080350RH141529196118221288882213084Ratregion
5070902RH134772208118114138581141593Ratregion
5078750RH140530159117256250572562664Ratregion
5073568RH137511187117815187378152060Ratregion
5070742RH134678201117939391579394116Ratregion
5074634RH138129128117406303874063166Ratregion
5061776AI715998132118213903182139163Ratregion
5066784AU048153192117637727476377466Ratregion
5067202AU047899177117816282478163001Ratregion
5067466AU047727168116954049069540658Ratregion
5067592AU047653186117570973075709916Ratregion
5068534AU047088174118062441280624584Ratregion
5070177RH94517147118018799480188141Ratregion
5069316AU046579104118239659382396697Ratregion
5060040BF388375121117599367575993796Ratregion
5060958AA874911196118035558380355779Ratregion
5062640BF40363895117091009670910191Ratregion
5064442AI501553145117939243579392580Ratregion
5060254BG378170179117907616879076347Ratregion
5063828AW535588167116965185369652022Ratregion
5065202BE121163157117921844179218598Ratregion
5062196BE106303201118215382182154022Ratregion
5062404BF397888151117241392372414074Ratregion
5062524BF403357192118274050582740697Ratregion
5062720AI71656491118039467280394763Ratregion
5064338AI763447140118269221682692357Ratregion
5061062BG379202160117219148572191645Ratregion
5061096AW532277150118017065880170808Ratregion
5064498BI296803173116953814669538319Ratregion
5064576BF399377165117943114279431307Ratregion
5066232PMC123023P2187117695780176957988Ratregion
5063136BI295978183117758173577581918Ratregion
5064672BF399547104117841043478410538Ratregion
5066294PMC139890P1132117776665177766783Ratregion
5082311BE119158159118268701582687174Ratregion
5086289AI535225202117443514174435343Ratregion
5086355AA850138185118191157681911761Ratregion
5086355AA850138185118194598481946169Ratregion
5087422Ephb3695117984072579841420Ratregion
5086417AA965213202117044095770441159Ratregion
5087838Eif4a2188117776652777766952Ratregion
5087922Hira157118213247082132627Ratregion
5089163AU048993275117585389775854172Ratregion
5089961AU049467185117785623477856419Ratregion
5083055BF390716153118276904282769195Ratregion
5089365AU049112256117178172871781984Ratregion
5083747AI599402207117812150878121715Ratregion
5083883AI010659172117333249873332670Ratregion
5090435AU049748216117723367177233887Ratregion
5090635AU049871121117873121678731337Ratregion
5081517BE117128163117888628178886444Ratregion
5081703BF40829795117892842978928524Ratregion
5084416AI17673696117772202877722124Ratregion
5084482AA850488149117384689073847039Ratregion
5090159AU049586167118272397282724139Ratregion
5081869BI273900216118036460580364821Ratregion
5081989BE118996191118021429180214482Ratregion
5090253AU049641295117493039674930693Ratregion
5083175BF390931198118034009780340295Ratregion
5085629BM383343199117097463470974833Ratregion
5086789BE114628168117021771270217880Ratregion
5083799AI599574178118236141482361592Ratregion
5084044AI40823894117820537078205464Ratregion
5502589RH12546195117815197378152068Ratregion
5507557D18S1297114118216748082168493Ratregion
5503240UniSTS:237454224118273693782737161Ratregion
5503244UniSTS:237455213118275049682750709Ratregion
5507707SST-112F84117695713176957836Ratregion
5503615UniSTS:465379640118221346682214106Ratregion
5503933UniSTS:256695853117695697476957827Ratregion
5504488PMC22838P1107118227846382278570Ratregion
5504488PMC22838P1107118227846382278570Ratregion
5505298Ppp2ca468118227860482279072Ratregion
5505300Ppp2ca51118227903982279090Ratregion
5506469G35720169117856980678569975Ratregion
5500272D22S1095E102118202458182024683Ratregion
5500298D20S100580117776452777764607Ratregion
5503246UniSTS:237474226117776898477769210Ratregion
5503248UniSTS:237479202117048400870484210Ratregion
5504183UniSTS:259614377117070651770707894Ratregion
5504508PMC25851P285117486563574865720Ratregion
5501681Hes1401117070583470706235Ratregion
5505390Ewsr10118099472480995517Ratregion
5502981Ccnb1ip1500117780377777804277Ratregion
Position Markers

Flank 1: (D11Rat61)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21169,446,070 - 69,446,234 (+)MAPPER
Rnor_6.01172,720,029 - 72,720,192NCBI
Rnor_5.01175,797,786 - 75,797,949UniSTS
Celera1168,866,233 - 68,866,396UniSTS
SHRSP x BN Map1133.2098RGD
SHRSP x BN Map1133.2098UniSTS
Cytogenetic Map11q11UniSTS
Peak: (D11Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21178,851,329 - 78,851,519 (+)MAPPER
Rnor_6.01182,442,929 - 82,443,118NCBI
Rnor_5.01185,534,123 - 85,534,312UniSTS
RGSC_v3.41181,091,341 - 81,091,531RGD
RGSC_v3.41181,091,342 - 81,091,531UniSTS
RGSC_v3.11181,148,931 - 81,149,120RGD
Celera1177,714,115 - 77,714,304UniSTS
RH 3.4 Map11650.2UniSTS
RH 3.4 Map11650.2RGD
RH 2.0 Map1160.2RGD
SHRSP x BN Map1135.7599RGD
FHH x ACI Map1156.1999RGD
Flank 2: (D11Rat50)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,846,466 - 82,846,715 (+)MAPPER
Rnor_6.01186,994,547 - 86,994,795NCBI
Rnor_5.01190,087,331 - 90,087,579UniSTS
RGSC_v3.41184,840,963 - 84,841,212RGD
RGSC_v3.41184,840,964 - 84,841,212UniSTS
RGSC_v3.11184,881,561 - 84,881,809RGD
Celera1181,622,447 - 81,622,695UniSTS
RH 3.4 Map11699.5UniSTS
RH 3.4 Map11699.5RGD
SHRSP x BN Map1139.3498UniSTS
SHRSP x BN Map1139.3498RGD
Cytogenetic Map11q23UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
2302043Pia27Pristane induced arthritis QTL 2718.60.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)118256654583440803Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Bvd3

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcrosstoH-Tx/Hcj  
qtl_gene Homology mapping to human shows that five potential candidate genes for this QTL in human are FGF12 (fibroblast growth factor 12), SST (somatostatin precursor), COMT (catchol o-methyltransferase, membrane bound form), ARVCF (armadillo repeat protein deleted in velo-cardio-facial syndrome), SPAG6 (sperm associated antigen 6 isoform, sperm flagellar protein, axonemal central apparatus protein). 1302890
qtl_general Majority of animals with hydrocephalus were heterozygous HF genotype. 1302890
qtl_map QTL is located near the telomeric end of chromosome 11. 1302890
qtl_statistics_details The confidence interval for this QTL is 15.5 cM with the fully significant linkage at 3.0 cM. 1302890