Swd1 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Swd1 (Spike wave discharge measurement QTL 1) Rattus norvegicus

Symbol: Swd1
Name: Spike wave discharge measurement QTL 1
RGD ID: 1354645
Also known as: T1swd/wag
Trait: brain electrophysiology trait   (VT:0010557)    
Measurement Type: mean duration of a single type I spike-and-wave discharge train   (CMO:0002064)    
LOD Score: 3.91
P Value: 1.2E-4
Variance: Not Available
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.09107,198,926 - 110,038,814RGD_MAPPER_PIPELINERnor6.0
Rnor_5.09106,780,549 - 109,609,577RGDRnor5.0
RGSC_v3.49100,495,066 - 101,209,445RGDRGSC3.4
RGSC_v3.19100,704,225 - 101,418,923RGD
Cross Type: Intercross
Strains Crossed: ACI/N WAG/Rij 
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
WAG/Rij  (IEA)


References - curated
1. Gauguier D, etal., Epilepsia 2004 Aug;45(8):908-15.


Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1585470LOC686129similar to bone morphogenetic protein receptor, type 1A9108269461108272467Rat
7728635LOC102556490uncharacterized LOC1025564909110015968110031163Rat
9321687LOC103693247uncharacterized LOC1036932479109407093109408111Rat
11462787LOC108352036uncharacterized LOC1083520369109028943109079053Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D9Rat109)
Rat AssemblyChrPosition (strand)Source
Rnor_6.09107,198,926 - 107,199,079NCBI
Rnor_5.09106,780,549 - 106,780,702UniSTS
RGSC_v3.49100,495,067 - 100,495,220UniSTS
RGSC_v3.49100,495,066 - 100,495,220RGD
RGSC_v3.19100,704,225 - 100,704,716RGD
Celera999,018,894 - 99,019,047UniSTS
SHRSP x BN Map970.4499UniSTS
SHRSP x BN Map970.4499RGD
FHH x ACI Map981.3RGD
Peak: (D9Rat103)
Rat AssemblyChrPosition (strand)Source
Rnor_6.09116,140,301 - 116,140,502NCBI
Rnor_5.09115,629,810 - 115,630,011UniSTS
RGSC_v3.49107,079,208 - 107,079,410RGD
RGSC_v3.49107,079,209 - 107,079,410UniSTS
RGSC_v3.19107,288,688 - 107,288,890RGD
Celera9105,074,876 - 105,075,077UniSTS
Cytogenetic Map9q37UniSTS
FHH x ACI Map985.77UniSTS
FHH x ACI Map985.77RGD
Flank 2: (D9Rat163)
Rat AssemblyChrPosition (strand)Source
Rnor_6.09110,038,581 - 110,038,814NCBI
Rnor_5.09109,609,344 - 109,609,577UniSTS
RGSC_v3.49101,209,211 - 101,209,443RGD
RGSC_v3.49101,209,212 - 101,209,445UniSTS
RGSC_v3.19101,418,691 - 101,418,923RGD
FHH x ACI Map981.3UniSTS
FHH x ACI Map981.3RGD

QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)963270073107878387Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)966757444112943287Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)970241351115241351Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)970942881115942881Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)981411073119983851Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)983686153111609081Rat
4889852Pur26Proteinuria QTL 26150.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)990024661107199079Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)990024661119983851Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)999041068107878528Rat
1354645Swd1Spike wave discharge measurement QTL 13.910.00012brain electrophysiology trait (VT:0010557)mean duration of a single type I spike-and-wave discharge train (CMO:0002064)9107198926110038814Rat

Additional Information

Database Acc Id Source(s)
NCBI Gene Swd1

RGD Curation Notes
Note Type Note Reference
qtl_cross_type Intercross  
qtl_general The region covered by the QTL shows synteny with mouse chromosome 1 (40-60cM) and human 2q33-q37. 1302436