Swd1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Swd1 (Spike wave discharge measurement QTL 1) Rattus norvegicus

Symbol: Swd1
Name: Spike wave discharge measurement QTL 1
RGD ID: 1354645
Previously known as: T1swd/wag
Trait: brain electrophysiology trait   (VT:0010557)    
Measurement Type: mean duration of a single type I spike-and-wave discharge train   (CMO:0002064)    
LOD Score: 3.91
P Value: 1.2E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr89109,044,573 - 109,749,900RGD_MAPPER_PIPELINE
mRatBN7.29101,597,509 - 102,302,863RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.09107,198,926 - 110,038,814RGD_MAPPER_PIPELINERnor6.0
Rnor_5.09106,780,549 - 109,609,577RGDRnor5.0
RGSC_v3.49100,495,066 - 101,209,445RGDRGSC3.4
RGSC_v3.19100,704,225 - 101,418,923RGD
Cross Type: Intercross
Strains Crossed: ACI/N WAG/Rij 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
WAG/Rij  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Chromosomal mapping of genetic loci controlling absence epilepsy phenotypes in the WAG/Rij rat. Gauguier D, etal., Epilepsia 2004 Aug;45(8):908-15.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41334814LOC120094758uncharacterized LOC1200947589101690445101717311Rat
7728635LOC102556490uncharacterized LOC1025564909102279478102295083Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
40510D9Rat1091549101597509101597663Ratregion
41672D9Rat1632349102302629102302863Ratregion
Position Markers

Flank 1: (D9Rat109)
Rat AssemblyChrPosition (strand)Source
GRCr89109,044,573 - 109,044,727 (+)Marker Load Pipeline
mRatBN7.29101,597,509 - 101,597,663 (-)MAPPER
Rnor_6.09107,198,926 - 107,199,079NCBI
Rnor_5.09106,780,549 - 106,780,702UniSTS
RGSC_v3.49100,495,066 - 100,495,220RGD
RGSC_v3.49100,495,067 - 100,495,220UniSTS
RGSC_v3.19100,704,225 - 100,704,716RGD
Celera999,018,894 - 99,019,047UniSTS
SHRSP x BN Map970.4499UniSTS
SHRSP x BN Map970.4499RGD
FHH x ACI Map981.3RGD
Peak: (D9Rat103)
Rat AssemblyChrPosition (strand)Source
GRCr89115,362,306 - 115,362,508 (+)Marker Load Pipeline
mRatBN7.29107,915,537 - 107,915,739 (+)MAPPER
Rnor_6.09116,140,301 - 116,140,502NCBI
Rnor_5.09115,629,810 - 115,630,011UniSTS
RGSC_v3.49107,079,208 - 107,079,410RGD
RGSC_v3.49107,079,209 - 107,079,410UniSTS
RGSC_v3.19107,288,688 - 107,288,890RGD
Celera9105,074,876 - 105,075,077UniSTS
FHH x ACI Map985.77UniSTS
FHH x ACI Map985.77RGD
Cytogenetic Map9q37UniSTS
Flank 2: (D9Rat163)
Rat AssemblyChrPosition (strand)Source
GRCr89109,749,666 - 109,749,900 (+)Marker Load Pipeline
mRatBN7.29102,302,629 - 102,302,863 (+)MAPPER
Rnor_6.09110,038,581 - 110,038,814NCBI
Rnor_5.09109,609,344 - 109,609,577UniSTS
RGSC_v3.49101,209,211 - 101,209,443RGD
RGSC_v3.49101,209,212 - 101,209,445UniSTS
RGSC_v3.19101,418,691 - 101,418,923RGD
FHH x ACI Map981.3RGD
FHH x ACI Map981.3UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1354645Swd1Spike wave discharge measurement QTL 13.910.00012brain electrophysiology trait (VT:0010557)mean duration of a single type I spike-and-wave discharge train (CMO:0002064)9101597509102302863Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Swd1

RGD Curation Notes
Note Type Note Reference
qtl_cross_type Intercross  
qtl_general The region covered by the QTL shows synteny with mouse chromosome 1 (40-60cM) and human 2q33-q37. 1302436