Swd2 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Swd2 (Spike wave discharge measurement QTL 2) Rattus norvegicus

Symbol: Swd2
Name: Spike wave discharge measurement QTL 2
RGD ID: 1354631
Also known as: T2swd/wag
Trait: brain electrophysiology trait   (VT:0010557)    
Measurement Type: brain total spike-and-wave discharge duration   (CMO:0001740)    
LOD Score: 3.64
P Value: 2.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.05157,319,671 - 171,194,163RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05161,060,798 - 174,683,006RGDRnor5.0
RGSC_v3.45157,691,737 - 170,688,737RGDRGSC3.4
RGSC_v3.15157,701,777 - 170,699,258RGD
Cross Type: Intercross
Strains Crossed: ACI/N WAG/Rij 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/N  (IEA)
WAG/Rij  (IEA)

References

References - curated
1. Gauguier D, etal., Epilepsia 2004 Aug;45(8):908-15.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3288Padi2peptidyl arginine deiminase 25159428479159471113Rat
3289Padi3peptidyl arginine deiminase 35159309000159336429Rat
3290Padi4peptidyl arginine deiminase 45159260675159293906Rat
61819Pdpnpodoplanin5161947137161981441Rat
3930Uts2urotensin 25168078748168084133Rat
68435Clcnkachloride voltage-gated channel Ka5159931497159946483Rat
62021Hspb7heat shock protein family B (small) member 75159968077159971563Rat
3194Nppbnatriuretic peptide B5164796176164797538Rat
68328Slc2a5solute carrier family 2 member 55167142182167174203Rat
2553Eno1enolase 15167288223167299610Rat
61880Vamp3vesicle-associated membrane protein 35168126157168136628Rat
61894Tas1r2taste 1 receptor member 25158119894158135733Rat
70516Ca6carbonic anhydrase 65167226246167244786Rat
61867Casp9caspase 95160356211160373774Rat
3193Nppanatriuretic peptide A5164808407164809716Rat
2383Cortcortistatin5165942780165944221Rat
3879Tnfrsf8TNF receptor superfamily member 85163186349163231578Rat
62044Htr65-hydroxytryptamine receptor 65157501202157518870Rat
629475Rerearginine-glutamic acid dipeptide repeats5167330966167664506Rat
68336Pex14peroxisomal biogenesis factor 145165782895165918445Rat
621339Hes3hes family bHLH transcription factor 35169463196169469795Rat
620418Fbxo6F-box protein 65164956285164962075Rat
621238Tnfrsf1bTNF receptor superfamily member 1B5163136390163167299Rat
2548Cela2achymotrypsin like elastase 2A5160374031160383782Rat
620214Masp2mannan-binding lectin serine peptidase 25165415105165429857Rat
621618Icmtisoprenylcysteine carboxyl methyltransferase5169475270169482031Rat
3287Padi1peptidyl arginine deiminase 15159338850159371313Rat
621751Fbxo2F-box protein 25164972483164977912Rat
61891Tas1r1taste 1 receptor member 15169200389169212113Rat
628856Acot7acyl-CoA thioesterase 75169357582169450215Rat
62082Hes2hes family bHLH transcription factor 25169338097169339142Rat
621581Per3period circadian regulator 35168088126168123482Rat
621189Rpl22ribosomal protein L225169506150169512875Rat
620311Akr7a2aldo-keto reductase family 7, member A25157759448157768473Rat
68371Mtormechanistic target of rapamycin kinase5165263813165373967Rat
620652Espnespin5169293356169331338Rat
621382Plod1procollagen-lysine, 2-oxoglutarate 5-dioxygenase 15164720629164747071Rat
1303132Plekhg5pleckstrin homology and RhoGEF domain containing G55169244778169288310Rat
621520Kif1bkinesin family member 1B5165994803166133497Rat
628639Clcnkbchloride voltage-gated channel Kb5159950384159973576Rat
1302954Spata21spermatogenesis associated 215159612541159638073Rat
735063Necap2NECAP endocytosis associated 25159589856159602260Rat
620796Srmspermidine synthase5165405168165408325Rat
61828Kcnab2potassium voltage-gated channel subfamily A regulatory beta subunit 25169570327169658875Rat
620334DffaDNA fragmentation factor subunit alpha5165922893165935822Rat
1304738Ube4bubiquitination factor E4B5166156033166259069Rat
1305584Dhrs3dehydrogenase/reductase 35162809090162843385Rat
1307499Mad2l2mitotic arrest deficient 2 like 25164943183164956255Rat
1305863Klhl21kelch-like family member 215169181418169190073Rat
1305820Disp3dispatched RND transporter family member 35165051522165099826Rat
1307585Efhd2EF-hand domain family, member D25160407777160423811Rat
1307977Atp13a2ATPase cation transporting 13A25159512208159531631Rat
1307599Errfi1ERBB receptor feedback inhibitor 15167951564167966011Rat
1307005Plekhm2pleckstrin homology and RUN domain containing M25160182556160219770Rat
1306562H6pdhexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)5166994683167030441Rat
1304766Arhgef19Rho guanine nucleotide exchange factor 195159754954159773699Rat
1305364Croccciliary rootlet coiled-coil, rootletin5159540453159583194Rat
1307731Dnajc11DnaJ heat shock protein family (Hsp40) member C115169109907169154725Rat
3151Nbl1NBL1, DAN family BMP antagonist5157524569157535701Rat
1306458Clstn1calsyntenin 15166533262166601686Rat
708502Slc45a1solute carrier family 45, member 15167672134167696331Rat
1304787Fbxo42F-box protein 425159670662159729070Rat
1306031Mfap2microfibril associated protein 25159534202159539750Rat
1305350RGD1305350similar to RIKEN cDNA 2510039O185164751413164757680Rat
1307204Epha2Eph receptor A25159845773159874203Rat
1305379Clcn6chloride voltage-gated channel 65164811815164844554Rat
1311096Gpr157G protein-coupled receptor 1575167109691167125380Rat
1309439Klhdc7akelch domain containing 7A5158433394158440185Rat
1311709Mrto4MRT4 homolog, ribosome maturation factor5157814142157820889Rat
1309319Spsb1splA/ryanodine receptor domain and SOCS box containing 15166913734166978534Rat
1308403Vps13dvacuolar protein sorting 13 homolog D5162891451163119239Rat
1308379Ctrcchymotrypsin C5160394677160403373Rat
1559644RGD1559644similar to novel protein similar to esterases5162727638162751145Rat
1310427Emc1ER membrane protein complex subunit 15157820908157846226Rat
1310996Nmnat1nicotinamide nucleotide adenylyltransferase 15166409460166430291Rat
1311627Slc66a1solute carrier family 66 member 15157744945157759370Rat
1311581Zbtb48zinc finger and BTB domain containing 485169191771169200140Rat
1359395Dnajc16DnaJ heat shock protein family (Hsp40) member C165160325088160352874Rat
1359157Slc25a34solute carrier family 25, member 345160175206160179978Rat
1310906TardbpTAR DNA binding protein5165432089165442232Rat
1309253Lzicleucine zipper and CTNNBIP1 domain containing5166430305166443485Rat
1308598Sdhbsuccinate dehydrogenase complex iron sulfur subunit B5159484378159505063Rat
1311416Lrrc38leucine rich repeat containing 385162031722162053723Rat
1309611Pla2g2ephospholipase A2, group IIE5157327657157333039Rat
1309986Rcc2regulator of chromosome condensation 25159220531159236313Rat
1308145Phf13PHD finger protein 135169161412169167831Rat
1310117Igsf21immunoglobin superfamily, member 215158503090158735702Rat
1307143Zbtb17zinc finger and BTB domain containing 175159993799160014899Rat
1308878RGD1308878similar to arylacetamide deacetylase5162506652162516264Rat
1309952Mthfrmethylenetetrahydrofolate reductase5164844642164864360Rat
1309588Ubiad1UbiA prenyltransferase domain containing 15165247630165259228Rat
1562703Camta1calmodulin binding transcription activator 15168138207169017295Rat
1560468Otud3OTU deubiquitinase 35157346286157368450Rat
1564061Pramef8PRAME family member 85162183397162197119Rat
1560286Szrd1SUZ RNA binding domain containing 15159638259159662790Rat
1561813Pramef25PRAME family member 255162414706162416952Rat
1562749Ctnnbip1catenin, beta-interacting protein 15166464170166513030Rat
1563334RGD1563334similar to novel protein similar to esterases5162593460162602329Rat
1565761Aadacl4arylacetamide deacetylase-like 45162676109162688907Rat
1560424Padi6peptidyl arginine deiminase 65159241276159256749Rat
1560187Micos10mitochondrial contact site and cristae organizing system subunit 105157546855157573183Rat
1565680Oog1oogenesin 15162243154162249128Rat
1563257Aadacl3arylacetamide deacetylase-like 35162323373162332014Rat
1560231RGD1560231similar to 60S ribosomal protein L115161723868161724841Rat
1311815Ddi2DNA damage inducible 1 homolog 25160230958160282836Rat
1359346Agtrapangiotensin II receptor-associated protein5164888069164898387Rat
1359147Kaznkazrin, periplakin interacting protein5160637235161730513Rat
1561421Cplane2ciliogenesis and planar polarity effector 25159735008159735956Rat
628635Akr7a3aldo-keto reductase family 7 member A35157801120157813756Rat
628843Mfn2mitofusin 25164684244164715414Rat
1564170Gpr153G protein-coupled receptor 1535169450275169463878Rat
1560172Nphp4nephrocystin 45169647581169744662Rat
1308109Thap3THAP domain containing 35169155239169160987Rat
1359551Fblim1filamin binding LIM protein 15160122466160158921Rat
1310990Pik3cdphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta5166602053166628028Rat
1585054LOC691363hypothetical protein LOC6913635165573320165573677Rat
1565452Tmem51transmembrane protein 515160570510160620647Rat
1585098Draxindorsal inhibitory axon guidance protein5164913085164943012Rat
1587379LOC298611alpha-tubulin pseudogene and flanks5161924553161926288Rat
1359099Capzbcapping actin protein of muscle Z-line subunit beta5157642742157742487Rat
1582748LOC691566similar to mitochondrial carrier homolog 15169333975169334486Rat
1566357Tmco4transmembrane and coiled-coil domains 45157421738157501104Rat
1583785LOC366502hypothetical gene supported by NM_0229495165463273165464011Rat
1583832Pgdphosphogluconate dehydrogenase5165966128165982327Rat
1582725Chd5chromodomain helicase DNA binding protein 55169519212169572059Rat
1563533Casz1castor zinc finger 15165625119165777053Rat
1587396LOC691196similar to arylacetamide deacetylase5166293476166335979Rat
1562168Rbp7retinol binding protein 75166278214166282832Rat
1587376Miipmigration and invasion inhibitory protein5164672464164679503Rat
1585063LOC691354hypothetical protein LOC6913545165464832165491375Rat
1587426LOC691162hypothetical protein LOC6911625162351021162369987Rat
1587431Pramef12PRAME family member 125162378442162388786Rat
1587437Pramef20PRAME family member 205162406599162411066Rat
1563121Ubr4ubiquitin protein ligase E3 component n-recognin 45157848162157956137Rat
1566083Srarpsteroid receptor associated and regulated protein5159981267159985412Rat
1566167Nol9nucleolar protein 95169213076169233173Rat
1566169Tmem82transmembrane protein 825160170617160175118Rat
1562463Fbxo44F-box protein 445164962921164972273Rat
1565070LOC500594LRRGT001625169632527169637356Rat
1561413RGD1561413similar to BC021442 protein5164496684164547343Rat
1583902Slc2a7solute carrier family 2 member 75167195981167211613Rat
1564360Pax7paired box 75158211001158313510Rat
1584908LOC366497similar to pyruvate kinase 35162479317162484699Rat
1563444Fhad1forkhead associated phosphopeptide binding domain 15160438575160555103Rat
1565622RGD1565622RGD15656225164419299164425034Rat
1583942Slc25a33solute carrier family 25 member 335166701463166726794Rat
1583947Tmem201transmembrane protein 2015166672700166695288Rat
1591001LOC690831similar to chromosome 17 open reading frame 375159602275159605559Rat
1585585Arhgef10lRho guanine nucleotide exchange factor 10 like5159018373159089383Rat
1588644Pramef27PRAME family member 275162158000162165475Rat
1585610LOC683584similar to POU domain, class 5, transcription factor 1-like protein 35161374587161376388Rat
1589867Spenspen family transcriptional repressor5160015573160070915Rat
1586278LOC691228similar to reduced expression 25163547938163679841Rat
1590955Fam131cfamily with sequence similarity 131, member C5159914931159931089Rat
1583705LOC503006similar to 40S ribosomal protein S15 (RIG protein)5170224795170225226Rat
1586245LOC691266similar to casein kinase 1, gamma 15164213774164215378Rat
1586249Rex2reduced expression 25164222515164235267Rat
621808Park7Parkinsonism associated deglycase5167982438168004724Rat
1587447Pramef17PRAME family member 175162439717162443016Rat
1586256LOC691254hypothetical protein LOC6912545164031215164110413Rat
1586262Rnf207ring finger protein 2075169486253169500451Rat
1586231LOC691280similar to Zinc finger protein 180 (HHZ168)5164644438164665455Rat
1594531Prdm2PR/SET domain 25161769587161879150Rat
1596075Rnf186ring finger protein 1865157416897157418121Rat
1593248Exosc10exosome component 105165374964165398195Rat
1593379Rps4x-ps4ribosomal protein S4, X-linked, pseudogene 45162482855162483749Rat
1590138Ajap1adherens junctions associated protein 15170615885170679315Rat
1598206Tnfrsf25TNF receptor superfamily member 255169288419169293137Rat
1598208Tnfrsf9TNF receptor superfamily member 95168009245168035813Rat
1598209LOC500584similar to casein kinase 1, gamma 3 isoform 25164316029164361225Rat
1308424Agmatagmatinase5160306754160321951Rat
1625998Vom2r-ps78vomeronasal 2 receptor, pseudogene 785164282149164282352Rat
1624206Aldh4a1aldehyde dehydrogenase 4 family, member A15158090238158115725Rat
1624207Iffo2intermediate filament family orphan 25158042587158083311Rat
2319112LOC100361968Zfp758 protein-like5163735536163757167Rat
2318582LOC100362203Predicted gene, OTTMUSG00000010965-like5164391831164392507Rat
2318719LOC100362164casein kinase 1, gamma 3-like5164311466164314345Rat
2319953LOC100361514hypothetical LOC1003615145163310412163325960Rat
2319680LOC100361693zinc finger protein 53-like5163576463163596466Rat
2321550Rps27a-ps2ribosomal protein S27a, pseudogene 25159895060159895598Rat
2323583Rps21-ps1ribosomal protein S21, pseudogene 15159606647159606990Rat
2324274LOC100362684ribosomal protein S20-like5161889229161889746Rat
2324336LOC100362622sorting nexin 18-like5161402889161404861Rat
2323948LOC100362830ribosomal protein S7-like5169021517169022178Rat
2325584Mir34amicroRNA 34a5167092491167092592Rat
5128728Cenpscentromere protein S5165946106165955723Rat
6484979LOC100912971zinc finger protein 808-like5163826654163845675Rat
6492682LOC100911456migration and invasion-inhibitory protein-like5164548657164555842Rat
6492845LOC100911485mitofusin-2-like5164560437164586254Rat
6487785LOC100912329ubiquitin-conjugating enzyme E2 H-like5162254946162256688Rat
6499450LOC100910223zinc finger protein 761-like5163867920163901028Rat
6499833LOC100910191casein kinase I isoform gamma-3-like5163847881163849418Rat
6500161LOC100910117zinc finger protein 765-like5163701171163715234Rat
6500378LOC100910043casein kinase I isoform gamma-3-like5163692540163694644Rat
6500535LOC100910080casein kinase I isoform gamma-3-like5163697068163698479Rat
6501160LOC100909858zinc finger protein 845-like5163362475163367181Rat
7240728LOC101241876ubiquitin-conjugating enzyme E2H pseudogene5162358110162359852Rat
7489027Mir6332microRNA 63325167402968167403088Rat
7489030Mir6215microRNA 62155158060994158061060Rat
7515381LOC102556316uncharacterized LOC1025563165167965950167970127Rat
7540943LOC102548845uncharacterized LOC1025488455167268923167270719Rat
7530545LOC10255221240S ribosomal protein S2-like5165384632165385917Rat
7532802LOC102552821zinc finger protein 2 homolog5164419299164420518Rat
7497539LOC10255680460S ribosomal protein L36-like5163119247163124894Rat
7646732LOC102551534uncharacterized LOC1025515345164898531164902797Rat
7614436LOC102551478zinc finger protein 347-like5163901453163902875Rat
7615007LOC102547560uncharacterized LOC1025475605158987961158989663Rat
7665827LOC102548220uncharacterized LOC1025482205166731267166734162Rat
7635238LOC102551596uncharacterized LOC1025515965164907768164908206Rat
7558049LOC102547437uncharacterized LOC1025474375158543207158565112Rat
7637163LOC102546456uncharacterized LOC1025464565168478063168479859Rat
7559930LOC102549463uncharacterized LOC1025494635170052486170063858Rat
7623967LOC102551014zinc finger protein 624-like5163506732163530630Rat
7658417LOC102551309uncharacterized LOC1025513095164875558164885606Rat
7629259LOC102546708uncharacterized LOC1025467085159561418159563467Rat
7592969LOC102549399uncharacterized LOC1025493995169937602169949713Rat
7570163LOC102555587uncharacterized LOC1025555875162104142162109315Rat
7618904LOC102546752oocyte-expressed protein homolog5168843479168846802Rat
7556152LOC102555984uncharacterized LOC1025559845162133656162138397Rat
7556798LOC102556543uncharacterized LOC1025565435161436069161448069Rat
7547575LOC102550754uncharacterized LOC1025507545163558565163559387Rat
7562865LOC102556220uncharacterized LOC1025562205167927329167937374Rat
7603077LOC102550823casein kinase I isoform gamma-3-like5163543347163545451Rat
7585927LOC102546564uncharacterized LOC1025465645168536440168547815Rat
7553363Angptl7angiopoietin like 75165311794165318361Rat
7567711LOC102550429uncharacterized LOC1025504295170595691170606694Rat
7568401LOC102551951uncharacterized LOC1025519515165169281165192499Rat
7554176LOC102553488uncharacterized LOC1025534885160538464160541240Rat
7752004LOC102556501uncharacterized LOC1025565015168054654168060351Rat
7694630LOC102551209uncharacterized LOC1025512095163712051163712873Rat
7752676LOC102556126uncharacterized LOC1025561265158276224158281377Rat
7705579LOC102548844uncharacterized LOC1025488445160289499160292814Rat
7706312LOC102546642uncharacterized LOC1025466425159399199159404086Rat
7685779LOC102548366uncharacterized LOC1025483665166888814166891407Rat
7688236LOC102550246uncharacterized LOC1025502465162805112162808303Rat
7726360LOC102546563uncharacterized LOC1025465635159395365159396732Rat
7727057LOC102557514uncharacterized LOC1025575145157642078157642737Rat
7740098LOC102549990glyceraldehyde-3-phosphate dehydrogenase-like5169031829169042231Rat
7740951LOC102547502uncharacterized LOC1025475025166138681166142982Rat
7700793LOC102556185uncharacterized LOC1025561855158338141158345368Rat
7722251LOC102555983uncharacterized LOC1025559835158043208158044951Rat
7709749LOC102554076uncharacterized LOC1025540765161251174161257997Rat
7730210LOC102553292putative uncharacterized protein YIL169C-like5165944683165945663Rat
9133338LOC103692506uncharacterized LOC1036925065164076581164084113Rat
9136635LOC10369251740S ribosomal protein S8 pseudogene5158018047158019335Rat
9212267LOC103690344zinc finger protein 501-like5163352299163359795Rat
9101500LOC103692505uncharacterized LOC1036925055163933296163940524Rat
9140801LOC103692511uncharacterized LOC1036925115165731734165740119Rat
9103835LOC103692510uncharacterized LOC1036925105165559735165562108Rat
9106117LOC103692514uncharacterized LOC1036925145167056426167086851Rat
9153855LOC103692513uncharacterized LOC1036925135166514351166524490Rat
9121839LOC103692500uncharacterized LOC1036925005158584656158590455Rat
9203001LOC103692507uncharacterized LOC1036925075164238193164240357Rat
9210669LOC103692516uncharacterized LOC1036925165167340656167342934Rat
9214635LOC10369528260S ribosomal protein L9 pseudogene5163612540163613135Rat
9312074LOC103692509NHP2-like protein 1 pseudogene5164864885164866713Rat
9356913LOC103692501uncharacterized LOC1036925015159830233159835968Rat
9275519LOC103692503uncharacterized LOC1036925035161773906161788542Rat
9319280LOC103692518PRAME family member 18-like5162127625162130686Rat
9321252LOC103692508malate dehydrogenase, mitochondrial pseudogene5164502396164511863Rat
9284665LOC10369249940S ribosomal protein S25 pseudogene5158116146158117124Rat
9287277LOC103692521extensin-like5168522330168526484Rat
9378858LOC103690193uncharacterized LOC1036901935166141254166142982Rat
9341305LOC103692520uncharacterized LOC1036925205166430099166432027Rat
9263028LOC103692502uncharacterized LOC1036925025160843553160845775Rat
9461644LOC10369251960S ribosomal protein L9 pseudogene5163773531163774208Rat
9425811LOC103692504uncharacterized LOC1036925045163963076163990403Rat
9467056LOC103692515uncharacterized LOC1036925155167165003167169991Rat
9393794LOC103692512uncharacterized LOC1036925125166275112166276938Rat
9441276LOC103692523uncharacterized LOC1036925235168947715168951930Rat
9217812LOC103692522uncharacterized LOC1036925225168891275168896391Rat
9419525LOC103690216uncharacterized LOC1036902165170055130170063834Rat
11369953LOC108351061uncharacterized LOC1083510615166980913166984343Rat
11372222LOC108351054uncharacterized LOC1083510545159754295159761166Rat
11365268LOC108351050uncharacterized LOC1083510505157791676157799410Rat
11081182LOC10012536640S ribosomal protein S25166864178166872132Rat
11454675Trnai-aau2transfer RNA isoleucine (anticodon AAU) 25159754018159754091Rat
11463859LOC108351060uncharacterized LOC1083510605165122632165136171Rat
11436905LOC108351051uncharacterized LOC1083510515158126142158133634Rat
11437439LOC108351055uncharacterized LOC1083510555160555177160560940Rat
11357843LOC108351056uncharacterized LOC1083510565162029410162032327Rat
11370875LOC108351059uncharacterized LOC1083510595165022252165027934Rat
11425502LOC108351057uncharacterized LOC1083510575164393934164410220Rat
11399174LOC10835105860S ribosomal protein L35a pseudogene5164923228164923678Rat
11410862Trnas-aga3transfer RNA serine (anticodon AGA) 35167789003167789074Rat
11392000Trnaa-ggc1transfer RNA alanine (anticodon GGC) 15159367637159367708Rat
11403420LOC10835104960S ribosomal protein L21 pseudogene5157765280157766398Rat
11382308LOC108351072LYR motif-containing protein 1-like5167552301167557016Rat
11393480LOC108351065uncharacterized LOC1083510655167831382167840242Rat
11500964LOC108351053rho guanine nucleotide exchange factor 10-like protein5159093104159171870Rat
11477533LOC108351062uncharacterized LOC1083510625167037525167054705Rat
11477874LOC108351063uncharacterized LOC1083510635167267927167270543Rat
11510646Trnav-aac3transfer RNA valine (anticodon AAC) 35157898213157898284Rat
11484356LOC108351064small nuclear ribonucleoprotein G pseudogene5167373925167374737Rat
11516840LOC108351052uncharacterized LOC1083510525158392960158510310Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10517D5Arb142565160384322160384578Ratregion
11001D5Wox101615164807242164807402Ratregion
11002D5Mit151405164809772164809913Ratregion
34206D5Mgh151595167739539167739697Ratregion
34467D5Mgh161295167946000167946134Ratregion
33702D5Mit161985160338134160338325Ratregion
36207D5Rat471215162817289162817407Ratregion
35348D5Rat451535158854038158854190Ratregion
36396D5Mgh311345161050602161050735Ratregion
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36628D5Rat481515166237695166237826Ratregion
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39700D5Rat1851245171194040171194163Ratregion
38026D5Rat1092495170273699170273947Ratregion
40654D5Rat1772135160330044160330252Ratregion
40740D5Rat1812275165550783165550999Ratregion
38574D5Rat1112255170908981170909209Ratregion
38958D5Rat672085158596095158596302Ratregion
39168D5Rat992355157319671157319911Ratregion
42767D5Rat2431335166481145166481283Ratregion
42768D5Rat2602495164803790164804026Ratregion
42769D5Rat2442005169696938169697122Ratregion
41492D5Rat1781745161084664161084824Ratregion
42320D5Rat561525158585968158586120Ratregion
41044D8Rat1422145165654280165654483Ratregion
41070D5Rat1801495165718244165718386Ratregion
43873D5Got1141865165627541165627726Ratregion
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60473D5Got1003395159860901159861239Ratregion
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7206072Srm05165407456165408136Ratregion
7206480Mad2l21455164951723164951867Ratregion
7206498UniSTS:5466889235168140329168141251Ratregion
5035951PMC316718P14945164808537164809030Ratregion
5036075Afar1695157768277157768445Ratregion
7206402mMECIR6337715166964506166965276Ratregion
7206514UniSTS:5468138125167000648167001459Ratregion
7206686UniSTS:5475232175164808707164808923Ratregion
5036376Itga205157965849157966278Ratregion
5039142RH1275362045167664136167664339Ratregion
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505221342.MMHAP20FRF12.seq1745161847761161847934Ratregion
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5046830RH1319791935160235934160236126Ratregion
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5049552RH1335471805164811850164812029Ratregion
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5040236RH1281672025164685355164685556Ratregion
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5042860RH1296881815160673066160673246Ratregion
5039342RH1276512115164757391164757601Ratregion
5039430RH1277012185166601338166601555Ratregion
5042000RH1291801815159503458159505036Ratregion
5040514RH1283272205157742202157742421Ratregion
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5503031MARC_65458-65459:1186500885:31555164727842164728578Ratregion
5503164ksks1603095161796179161796487Ratregion
5504604PMC312773P31205161827987161828106Ratregion
5504841ha241905170812678170814131Ratregion
5505384Epha27145159873364159874077Ratregion
5505564UniSTS:4822669195167220026167220944Ratregion
5505978UniSTS:496742955169163339169163433Ratregion
5506376UniSTS:4790445425165432687165433228Ratregion
5506859G465972515160422768160423018Ratregion
5507063UniSTS:2243111625157525350157525511Ratregion
5506937RH1018472175169191772169191988Ratregion
5507317G481167935159175256159176048Ratregion
5502158MARC_7131-7132:996687522:105165365472165366221Ratregion
5502158MARC_7131-7132:996687522:105165365472165365933Ratregion
5499867UniSTS:2351021975168086036168086232Ratregion
5499865UniSTS:2350932815164811855164812135Ratregion
5501363RH1590705166585833166586234Ratregion
5501420Pax76455158310077158310721Ratregion
5501462D1S2335E1175169439820169439936Ratregion
5501578RH41831795159638298159638376Ratregion
5502152MARC_6491-6492:996689696:1775157816993157817663Ratregion
Position Markers

Flank 1: (D5Rat99)
Rat AssemblyChrPosition (strand)Source
Rnor_6.05157,319,671 - 157,319,911NCBI
Rnor_5.05161,060,798 - 161,061,038UniSTS
RGSC_v3.45157,691,737 - 157,691,978RGD
RGSC_v3.45157,691,738 - 157,691,978UniSTS
RGSC_v3.15157,701,777 - 157,702,017RGD
Celera5149,499,210 - 149,499,450UniSTS
RH 3.4 Map51033.5UniSTS
RH 3.4 Map51033.5RGD
RH 2.0 Map51026.6RGD
SHRSP x BN Map589.7999RGD
Peak: (D5Mgh15)
Rat AssemblyChrPosition (strand)Source
Rnor_6.05167,739,539 - 167,739,697NCBI
Rnor_5.05171,364,494 - 171,364,652UniSTS
RGSC_v3.45167,844,579 - 167,844,737RGD
RGSC_v3.45167,844,579 - 167,844,737UniSTS
RGSC_v3.15167,854,767 - 167,854,925RGD
Cytogenetic Map5 RGD
RH 3.4 Map51122.3UniSTS
RH 3.4 Map51122.3RGD
RH 2.0 Map51103.8RGD
Flank 2: (D5Rat185)
Rat AssemblyChrPosition (strand)Source
Rnor_6.05171,194,040 - 171,194,163NCBI
Rnor_5.05174,682,883 - 174,683,006UniSTS
RGSC_v3.45170,688,613 - 170,688,737RGD
RGSC_v3.45170,688,614 - 170,688,737UniSTS
RGSC_v3.15170,698,877 - 170,699,258RGD
Celera5162,679,245 - 162,679,368UniSTS
FHH x ACI Map5101.9UniSTS
FHH x ACI Map5101.9RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5149568588167739697Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5149832180164807402Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5142309061173707219Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132551937173707219Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149029982173687766Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114140832159140832Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5157212422167739539Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5142307322173707219Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5136354114173707219Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5157319671173707219Rat
631498Bp100Blood pressure QTL 1004.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5164797538164808407Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138154677172402610Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)584963058173504662Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5128687766173687766Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133943857173707219Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114140832159140832Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133943857173707219Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5134197905173707219Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)547745646167946134Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5150340838164298744Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5157319671171194163Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5161084664173707219Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5150360936167946134Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)561612600168109659Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116767924161767924Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136640731173707219Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5134712342173707219Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116767924161767924Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116767924161767924Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116767924161767924Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5134712342173707219Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5131077716173707219Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Swd2

RGD Curation Notes
Note Type Note Reference
qtl_cross_type Intercross  
qtl_general Region covered by the QTL shows synteny with mouse chromosome 4 (58-79 cM) and human 1pter-p32. 1302436