Salc2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Salc2 (Saline consumption QTL 2) Rattus norvegicus

Symbol: Salc2
Name: Saline consumption QTL 2
RGD ID: 1354600
Previously known as: Sit2; Saline intake QTL 2
Trait: drinking behavior trait   (VT:0001422)    
Measurement Type: saline drink intake rate   (CMO:0001627)    
LOD Score: 9.91
P Value: 0.001
Variance: 29.8
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21927,530,207 - 37,947,399RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01931,194,301 - 41,686,140RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01942,098,191 - 52,509,704RGDRnor5.0
RGSC_v3.41925,548,711 - 39,854,409RGDRGSC3.4
RGSC_v3.11925,553,592 - 39,859,290RGD
Cross Type: Not Available
Strains Crossed: BN/OrlIcoCrlf F344/IcoCrlf 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Nr3c2 is a candidate Gene for Salc2

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Gain of function mutation in the mineralocorticoid receptor of the Brown Norway rat. Marissal-Arvy N, etal., J Biol Chem 2004 Sep 17;279(38):39232-9. Epub 2004 Jul 12.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
9151310LOC103694973uncharacterized LOC103694973192761240027629804Rat
1564108HhipHedgehog-interacting protein192786368427952528Rat
7578796LOC102549584uncharacterized LOC102549584192805103528075585Rat
1308936Anapc10anaphase promoting complex subunit 10192815229928205552Rat
1305301Abce1ATP binding cassette subfamily E member 1192820556628230489Rat
11468429LOC108348925small nuclear ribonucleoprotein G pseudogene192821034428212718Rat
1305606Otud4OTU deubiquitinase 4192823671328279815Rat
7549007LOC102549652uncharacterized LOC102549652192837776228385051Rat
6495903Nt5c2-ps15'-nucleotidase, cytosolic II, pseudogene 1192841423828424767Rat
2322909Mrps36-ps3mitochondrial ribosomal protein S36, pseudogene 3192849490828495203Rat
3030Smad1SMAD family member 1192851313028573665Rat
1305035Mmaametabolism of cobalamin associated A192861906028649319Rat
7707469LOC102550010uncharacterized LOC102550010192865588228704532Rat
1561806C19h4orf51similar to human chromosome 4 open reading frame 51192866904428704512Rat
1560620Zfp827zinc finger protein 827192872056828887381Rat
41322043LOC120098577uncharacterized LOC120098577192892691528940920Rat
1561937Lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated192909825429112858Rat
41160673Reeld1reeler domain containing 1192914189829159970Rat
41167744LOC120098738U4 spliceosomal RNA192914193029142070Rat
1564388Slc10a7solute carrier family 10, member 7192918314329407470Rat
1306751Rbmxl1Rbmx like 1192940790229411519Rat
7700714LOC10255066860S ribosomal protein L21-like192945683829457305Rat
620075Pou4f2POU class 4 homeobox 2192948668629490327Rat
1589777Ttc29tetratricopeptide repeat domain 29192953170729750635Rat
11402022LOC10834888140S ribosomal protein S25 pseudogene192976874529769406Rat
1592274Ap3s1-ps2adaptor related protein complex 3 subunit sigma 1, pseudogene 2192981927629820542Rat
1587348Nsa2-ps15NSA2 ribosome biogenesis factor, pseudogene 15193003515830035929Rat
41237132LOC120098673U7 small nuclear RNA193004933630049401Rat
41343011LOC120098687small nucleolar RNA SNORA17193016270530162832Rat
40966524LOC120098594uncharacterized LOC120098594193019709130198483Rat
2535Ednraendothelin receptor type A193023354030303727Rat
727852Tmem184ctransmembrane protein 184C193034518330361275Rat
1306157Prmt9protein arginine methyltransferase 9193037634230414491Rat
1588859Arhgap10Rho GTPase activating protein 10193044857230710315Rat
11366551LOC108348983membrane-associated progesterone receptor component 1 pseudogene193051171630512578Rat
3094Nr3c2nuclear receptor subfamily 3, group C, member 2193071563431059885Rat
41072776LOC120098703small nucleolar RNA SNORA17193082363230823744Rat
1588826Rps27a-ps6ribosomal protein S27a, pseudogene 6193091627930916833Rat
7610401LOC102553276uncharacterized LOC102553276193145524731487135Rat
41403740LOC120098694small nucleolar RNA SNORA17193192771031927841Rat
11442314Trnah-gug11transfer RNA histidine (anticodon GUG) 11193198233331982404Rat
1589916Cdh7l1cadherin 7 like 1193199233732204030Rat
2322604Npm1-ps15nucleophosmin 1, pseudogene 15193212209332123262Rat
11435694LOC108353192uncharacterized LOC108353192193231488632561842Rat
1590923Hsp90ab1-ps2heat shock protein 90 alpha family class B member 1, pseudogene 2193243005232433227Rat
41022843LOC120098735small nucleolar RNA U3193255065132550858Rat
40928770Dynlt1-ps2dynein light chain Tctex-type 1, pseudogene 2193264733832647777Rat
1589885Myl6b-ps1myosin light chain 6B, pseudogene 1193282713532827751Rat
41394269LOC120098734small nucleolar RNA U3193288980032889874Rat
11450965H3f3al2H3.3 histone A like 2193291050832922382Rat
1564100Rasd2-ps1RASD family, member 2, pseudogene 1193292245832923087Rat
1561851Slc25a36l1solute carrier family 25 (pyrimidine nucleotide carrier ), member 36-like 1193294152332943368Rat
1308358Ces2gcarboxylesterase 2G193294674832954337Rat
7614959LOC102548129acylcarnitine hydrolase-like193296512332970188Rat
1560889Ces2hcarboxylesterase 2H193297424232988842Rat
1588734Ces3acarboxylesterase 3a193299238633000562Rat
1307418Ces4acarboxylesterase 4A193301173133030119Rat
40959505LOC120098688small nucleolar RNA SNORA17193303843133038569Rat
41194492LOC120098746U6 spliceosomal RNA193303935833039455Rat
620493Cbfbcore-binding factor subunit beta193304916233092752Rat
40987892Rpl27-ps10ribosomal protein L27, pseudogene 10193307557633076637Rat
621098Phaf1phagosome assembly factor 1193310145333138920Rat
1310170B3gnt9UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9193312974033134048Rat
621313TraddTNFRSF1A-associated via death domain193313614833142714Rat
1566420Fbxl8F-box and leucine-rich repeat protein 8193314270533147266Rat
1310808Hsf4heat shock transcription factor 4193314775533153479Rat
708558Nol3nucleolar protein 3193315406133158250Rat
1585272Matcap1microtubule associated tyrosine carboxypeptidase 1193315805333166784Rat
1311132Exoc3l1exocyst complex component 3-like 1193316683633174371Rat
2322129E2f4E2F transcription factor 4193317439633181806Rat
1593150Lrrc29leucine rich repeat containing 29193318171333203583Rat
1304734Elmo3engulfment and cell motility 3193318195233186399Rat
7489044Mir6318microRNA 6318193318419233184300Rat
2325404Mir328microRNA 328193318476633184849Rat
1560953Tmem208transmembrane protein 208193320358733206287Rat
1589776Fhod1formin homology 2 domain containing 1193320649233225448Rat
620473Slc9a5solute carrier family 9 member A5193322548133246913Rat
1310790Plekhg4pleckstrin homology and RhoGEF domain containing G4193325178833266490Rat
1561326Kctd19potassium channel tetramerization domain containing 19193325986933292011Rat
1303118Lrrc36leucine rich repeat containing 36193329207433342426Rat
1305061Tppp3tubulin polymerization-promoting protein family member 3193334589733349610Rat
1589775Zdhhc1zinc finger, DHHC-type containing 1193335053333375717Rat
2835Hsd11b2hydroxysteroid 11-beta dehydrogenase 2193339765633402899Rat
1306159Atp6v0d1ATPase H+ transporting V0 subunit D1193340335233447357Rat
2068Agrpagouti related neuropeptide193344799233481602Rat
41281721LOC120098617small nuclear ribonucleoprotein E-like193345391033454760Rat
1307772Ripor1RHO family interacting cell polarization regulator 1193347775033506424Rat
6493594Ctcfl2CCCTC-binding factor like 2193350745433522763Rat
621344CtcfCCCTC-binding factor193352172633571124Rat
1562390Carmil2capping protein regulator and myosin 1 linker 2193357125533586783Rat
1565053AcdACD, shelterin complex subunit and telomerase recruitment factor193358673933589481Rat
1303273Pard6apar-6 family cell polarity regulator alpha193358953133591900Rat
1307357Enkd1enkurin domain containing 1193359207433596552Rat
1561415C19h16orf86similar to human chromosome 16 open reading frame 86193359659133598703Rat
1311198Gfod2Gfo/Idh/MocA-like oxidoreductase domain containing 2193359968933647060Rat
41291857Snrpg-ps2small nuclear ribonucleoprotein polypeptide G, pseudogene 2193363696533637340Rat
1311587Ranbp10RAN binding protein 10193365604633716864Rat
11514155LOC108348930uncharacterized LOC108348930193368320033686829Rat
1565341Tsnaxip1translin-associated factor X interacting protein 1193371683433734824Rat
1309383Cenptcentromere protein T193373468433741159Rat
1310268Thap11THAP domain containing 11193374697733748794Rat
1359213Nutf2nuclear transport factor 2193375231933773595Rat
1562009Edc4enhancer of mRNA decapping 4193377406233786054Rat
2301010Nrn1lneuritin 1-like193378641933787879Rat
1304648Pskh1protein serine kinase H1193379491933827040Rat
621501Ctrlchymotrypsin-like193382727933829129Rat
1307428Psmb10proteasome 20S subunit beta 10193383095833833442Rat
2993Lcatlecithin cholesterol acyltransferase193383474833838214Rat
3687Slc12a4solute carrier family 12 member 4193383841833860369Rat
41130166LOC120098640uncharacterized LOC120098640193384514433848140Rat
1305484Dpep3dipeptidase 3193386822933876609Rat
1305746Dpep2dipeptidase 2193388355733896487Rat
1305612Dus2dihydrouridine synthase 2193390651733954922Rat
1311976Ddx28DEAD-box helicase 28193390979933911729Rat
1308692Nfatc3nuclear factor of activated T-cells 3193396064334035150Rat
1310855Esrp2epithelial splicing regulatory protein 2193403455934041726Rat
1302982Pla2g15phospholipase A2, group XV193405068534068070Rat
1309193Slc7a6solute carrier family 7 member 6193407347234100268Rat
708394Slc7a6ossolute carrier family 7, member 6 opposite strand193410197834110666Rat
1304869Prmt7protein arginine methyltransferase 7193411072434161531Rat
619754Smpd3sphingomyelin phosphodiesterase 3193416233734245786Rat
1563077Zfp90zinc finger protein 90193432198034333195Rat
2321884Rps12l1ribosomal protein S12 like 1193434393034344569Rat
2321738Rpl28l1ribosomal protein L28 like 1193436655434367671Rat
621089Cdh3cadherin 3193439359634444084Rat
69279Cdh1cadherin 1193449237134561775Rat
1559841Tango6transport and golgi organization 6 homolog193456958834757362Rat
628656Has3hyaluronan synthase 3193476842134782170Rat
1306894Chtf8chromosome transmission fidelity factor 8193478200534792306Rat
21079726DerpcDERPC proline and glycine rich nuclear protein193478223434792306Rat
1311341Utp4UTP4 small subunit processome component193479096234820558Rat
1592340Sntb2syntrophin, beta 2193483165734922325Rat
40927555LOC120098669U6 spliceosomal RNA193491212134912222Rat
628810Vps4avacuolar protein sorting 4 homolog A193493499934948888Rat
1582894Pdfpeptide deformylase (mitochondrial)193494940834951621Rat
1307074Cog8component of oligomeric golgi complex 8193495162534962377Rat
620069Nip7nucleolar pre-rRNA processing protein NIP7193496255734964700Rat
1305260Tmed6transmembrane p24 trafficking protein 6193496681334972900Rat
1310881Terf2telomeric repeat binding factor 2193497696335005813Rat
621551Cyb5bcytochrome b5 type B193506287135096741Rat
1587305Rpl10a-ps12ribosomal protein L10A, pseudogene 12193512961135130307Rat
1309142Nfat5nuclear factor of activated T-cells 5193519973735286675Rat
2503Nqo1NAD(P)H quinone dehydrogenase 1193529563335310528Rat
735222Nob1NIN1 (RPN12) binding protein 1 homolog193532280335335354Rat
1310091Wwp2WW domain containing E3 ubiquitin protein ligase 2193534682635471251Rat
1591046Eif5b-ps1eukaryotic translation initiation factor 5B, pseudogene 1193538789935392006Rat
2325351Mir140microRNA 140193546557735465675Rat
41314690LOC120098575RNA-binding protein 8A-like193547283735479346Rat
1306902Psmd7proteasome 26S subunit, non-ATPase 7193549431735501605Rat
1583591Rps20l3ribosomal protein S20 like 3193551099135511375Rat
41139013Btf3-ps6basic transcription factor 3, pseudogene 6193568002035680809Rat
41334234LOC120098516uncharacterized LOC120098516193599280135996408Rat
1560268Zfhx3zinc finger homeobox 3193625719636886104Rat
9101037LOC103694327uncharacterized LOC103694327193646357736465740Rat
41224249Trnat-agu21transfer RNA threonine (anticodon AGU) 21193657448536574557Rat
7709399Zfhx3lzinc finger homeobox 3 like193662425736632119Rat
11444644LOC108353195uncharacterized LOC108353195193669622336701645Rat
41303783LOC120098527uncharacterized LOC120098527193691368636926337Rat
41298336LOC120098483uncharacterized LOC120098483193707533937206890Rat
621677Pmfbp1polyamine modulated factor 1 binding protein 1193745812637507880Rat
1310345Dhx38DEAH-box helicase 38193751289337530135Rat
1305127Txnl4bthioredoxin-like 4B193753015737539827Rat
2825Hphaptoglobin193753962637544178Rat
68352Dhodhdihydroorotate dehydrogenase (quinone)193755185837573327Rat
2324490Pkd1l3polycystin 1 like 3, transient receptor potential channel interacting193758556437650083Rat
1307799Ist1IST1 factor associated with ESCRT-III193764884037671019Rat
1306674Zfp821zinc finger protein 821193767993737698831Rat
9319286Atxn1lataxin 1 like193770034137711529Rat
7719249LOC102554624uncharacterized LOC102554624193771150537725107Rat
619785Ap1g1adaptor related protein complex 1 subunit gamma 1193774463337831134Rat
41345086Trnas-aga26transfer RNA serine (anticodon AGA) 26193778142737781501Rat
41012179Snord71small nucleolar RNA, C/D box 71193780686937806952Rat
40972128LOC120098498uncharacterized LOC120098498193782042037835029Rat
1562857Phlpp2PH domain and leucine rich repeat protein phosphatase 2193783512537901804Rat
1562056Marveld3MARVEL domain containing 3193790872737923420Rat
3820Tattyrosine aminotransferase193794715337957717Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10726D19Arb2352193754440137544765Ratregion
10727D19Wox9157193754064437540803Ratregion
34033D19Mit5109193306179233061905Ratregion
11390D19Wox4194193794720737947399Ratregion
33602D19Mit10183193108194131082124Ratregion
36384D19Mgh11111193673968236739793Ratregion
35415D19Rat22129193467442834674557Ratregion
37758D19Rat33207193536868135368908Ratregion
34904D19Rat23172193445536834455540Ratregion
35128D19Rat24166193651145036511619Ratregion
35881D19Rat11128192968965629689776Ratregion
39670D19Rat9184193601893136019027Ratregion
38394D19Rat53121193297346832973603Ratregion
39018D19Rat29206192932249029322676Ratregion
39212D19Rat46143193452169434521833Ratregion
39300D19Rat40200193010343730103633Ratregion
39394D19Rat92201193281101932811220Ratregion
41280D19Rat72147193701207837012217Ratregion
42428D19Rat124210192905967329059881Ratregion
42429D19Rat118243193458415834584401Ratregion
41714D19Rat109126193006321930063337Ratregion
45606D19Got14168192843871428438882Ratregion
45607D19Got16158192849407628494234Ratregion
45609D19Got17157192849407628494234Ratregion
45610D19Got15156193046225130462407Ratregion
45611D19Got18132193177567731775809Ratregion
45615D19Got25136193330652933306665Ratregion
45618D19Got26146193459370834593854Ratregion
45619D19Got23158193464690334647061Ratregion
45620D19Got24249193420535934205608Ratregion
45621D19Got27238193513534735135584Ratregion
45622D19Got29164193568315235683316Ratregion
45623D19Got57225193420543634205661Ratregion
45624D19Got30152193640615636406310Ratregion
45625D19Got32259193714986237150121Ratregion
45626D19Got28255193627446536274720Ratregion
45627D19Wox6324193793716837937490Ratregion
45628D19Got31196193775666937756863Ratregion
60781D19Wox3124192753020727530329Ratregion
60186D19Got22142193353396733534109Ratregion
67286D19Arb5193794711237947409Ratregion
1632230D19Got110144193522793135228070Ratregion
1632230D19Got110144193522793135228070Ratregion
1632379D19Got109117193360599033606107Ratregion
1627722D19Ulb1158193106348431063642Ratregion
1638597D19Got108199193068246030682659Ratregion
1632729D19Got116141192940606029406201Ratregion
1635840D19Got122210193108193031082139Ratregion
1637592D19Mco3258193592129935921557Ratregion
7205964Ctrl74193382780933827883Ratregion
7206032Pou4f291192948771529487806Ratregion
7205916D2S21540193752593437527508Ratregion
5035743NIB1158102193770039937700501Ratregion
5036129Ctcf123193357097033571093Ratregion
7206558UniSTS:5470520193294218932943209Ratregion
5039194RH127566180193318150433181684Ratregion
5036512Tat0193794722237947402Ratregion
5035554NR3C2248193105040631050654Ratregion
5031278PMC124545P1320193105071331051033Ratregion
5033863RH140402136193718387337184009Ratregion
5033899RH140541121192815306228153183Ratregion
5031568AU047895161192805742128057582Ratregion
5029063RH143375191192815363028153836Ratregion
5031746AU047289204193660168036601882Ratregion
5034442BE118125177192872106928721246Ratregion
5026488RH132403214192911201229112226Ratregion
5026578RH132749198193753828237538480Ratregion
5029193RH143869235193545006235450297Ratregion
5031914AU046725147193768148737681634Ratregion
5034630BF390435152193409526534095417Ratregion
5026618RH132896209193790576937905978Ratregion
5029303RH144285137193432473834324875Ratregion
5034764AI105420110193112965431129764Ratregion
5032507D8Ertd281e249193403478434035033Ratregion
5032509D8Ertd587e237193770038837700625Ratregion
5032533WI-21064285193357033033570615Ratregion
5032639RH134752208193790503537905243Ratregion
5034920AI17923891193308107133081162Ratregion
5029989BF388462223193680118236801405Ratregion
5032857RH136743152193785182137851973Ratregion
5030161BF389186187193662601836626205Ratregion
5024962Smad1351192853969628540047Ratregion
5027631AW553189115193494853534948650Ratregion
5025200RH127400184193456155434561738Ratregion
5025232RH127522200193315789333158093Ratregion
5033327RH138429139192857303728573176Ratregion
5025330RH127903215193029675530296970Ratregion
5028081U51037173193356990533570078Ratregion
5028293D8Mit162146192949547129495617Ratregion
5028346SHGC-74292266193378563933785905Ratregion
5030909BI302228156192790026027900416Ratregion
5028494AI325971176193494863034948806Ratregion
5055053RH143578189193538529735385486Ratregion
5055123RH143619256193669287836693134Ratregion
5051256RH134529188193314703733147225Ratregion
5053723RH142814107193528015935280266Ratregion
5051457AW53996487193382649433826581Ratregion
5053775RH142844144192795235327952497Ratregion
5053925RH142930232192856948828569719Ratregion
5056949RH144673184193358497633585160Ratregion
5051957RH94757160192853952128539681Ratregion
5051965RH94762103193344867833448781Ratregion
5054365RH143182161193506487535065036Ratregion
5054753RH143405172193549494735495119Ratregion
5059616BE097451162193315888233159044Ratregion
5059706BF39423193193372264033722733Ratregion
5056979RH144691153193397467933974832Ratregion
5052412AI449692229192823682128237050Ratregion
5052482AU041323136193783079737830933Ratregion
5059750BE103144150192785984027859990Ratregion
5055725RH143966144193315807133158215Ratregion
5050064RH1338410193769307637693285Ratregion
5058490AI555481208193782835337828561Ratregion
5053813RH142865164193534728135347445Ratregion
5053879RH142903199193433295234333151Ratregion
5049936RH133767195193433141934331614Ratregion
5054527RH143276119193770307737703196Ratregion
5050570RH134132204193383847233838676Ratregion
5053379RH142614105193293952032939625Ratregion
5054779RH143420147193478210634782252Ratregion
5044044RH130378170193340267233402842Ratregion
5044146RH130436200193769857937698779Ratregion
5044506RH130642220193410213934102358Ratregion
5043552RH130090180193112700831127188Ratregion
5043850RH130264212193788665337886865Ratregion
5043866RH130273184193112700431127188Ratregion
5044144RH130435220192857322028573440Ratregion
5044160RH130444197193071581430716011Ratregion
5045864RH131423152193496681534966967Ratregion
5046000RH131501194193475437134754565Ratregion
5041898RH129122190192815234328152533Ratregion
5048762RH133091215193549438335494598Ratregion
5044404RH130583211193313618633136397Ratregion
5047430RH132323186192872073928720925Ratregion
5046040RH131523201193318616533186366Ratregion
5046134RH131578159193318837833188537Ratregion
5047706RH132482212193497717234977384Ratregion
5046230RH131633193193410001234100205Ratregion
5047794RH1325320193358648433586757Ratregion
5049250RH133372204193527166735271873Ratregion
5049334RH133421182193366759933667781Ratregion
5049374RH133444194193395449533954689Ratregion
5048256RH132798196193782787637828072Ratregion
5049692RH133626209192922616629226374Ratregion
5048402RH132883217193348521833485435Ratregion
5049526RH133532181193496447334964654Ratregion
5049592RH133569203192795896927959172Ratregion
5040224RH128161186193071007830710264Ratregion
5042904RH129713182193494865234948834Ratregion
5040438RH128283203192823009128230294Ratregion
5040648RH128404204193358677433587057Ratregion
5043430RH130021182193509652435096706Ratregion
5042810RH129659152193478224234782394Ratregion
5043614RH130126198193406778934067987Ratregion
5040498RH128318194193529562235295816Ratregion
5040612RH128383211193378570833785919Ratregion
5040630RH128393180193532284835323028Ratregion
5043098RH129831189193509796935098158Ratregion
5043148RH129859167193383476133834928Ratregion
5073848RH137673215192921749829217713Ratregion
5072258RH136745141193477791234778053Ratregion
5076596RH139267128193051196130512089Ratregion
5077008RH139506189193377337133773560Ratregion
5075396RH138570131193663724636637377Ratregion
5074960RH138318176193360899333609169Ratregion
5075618RH138698145192795235127952496Ratregion
5079548RH141061220192911315529113375Ratregion
5079592RH141089215193029567630295891Ratregion
5077114RH139569211193718398537184196Ratregion
5077852RH139997184192876547828765662Ratregion
5079694RH141149195193350816833508363Ratregion
5078206RH140205209193509442335094632Ratregion
5080078RH141370197193416218434162381Ratregion
5079110RH140741220193391131833911538Ratregion
5079350RH140943199193751300937513208Ratregion
5080550RH141644181193388559733885778Ratregion
5071196RH134943212193359221533592427Ratregion
5073188RH137291183192956333429563517Ratregion
5073298RH137355208193309188333092091Ratregion
5071240RH134968208192953183929532047Ratregion
5073596RH137527196193506485535065051Ratregion
5067200AU047900184193476246234762646Ratregion
5067234AU047879194193676199936762193Ratregion
5067650AU047618214193590937335909587Ratregion
5067676AU047602235192936232229362552Ratregion
5067846AU047500227193493246634932688Ratregion
5067862AU047491215193561701735617227Ratregion
5069522AU046442124193372223933722356Ratregion
5069268AU046608248193377045833770534Ratregion
5069318AU046578188193445535034455538Ratregion
5063538BF404326218193679712936797347Ratregion
5065174BE121076187192865674528656932Ratregion
5065254BE121290178193677372436773902Ratregion
5060620BI292813163193318667833186842Ratregion
5060806BF389170130193356450633565103Ratregion
5062782AW534417161193498358034983741Ratregion
5064118BE120629155193038017030380325Ratregion
5060230BF400842199193373771433737913Ratregion
5063644BE107893174193347776433477938Ratregion
5064072BI296164151193048923330489384Ratregion
5065518AA957928189193782829537828484Ratregion
5065660BE109595151193318177333181924Ratregion
5062748AW534219206192933479729335003Ratregion
5064706BE108359186193491762434917810Ratregion
5064790BE108510159193750764937507808Ratregion
5064898BE108697160193317856233178722Ratregion
5086939AA800507170193044679230446962Ratregion
5086955AI008492187193478240134782588Ratregion
5082055BF409224136193673077236730908Ratregion
5082121BF409761212193315325033153462Ratregion
5086076AA998249140193318155233181692Ratregion
5086373Smpd3260193416511734165442Ratregion
5087092AI009319122193509472435094846Ratregion
5087350BQ193997161193071370030713861Ratregion
5082557BF416271151193731263137312781Ratregion
5087735Cdh1106193449236634492472Ratregion
5082949BF390465177193350149333501670Ratregion
5088106Sntb2187193491408834914275Ratregion
5088287AU048480288193437962534379913Ratregion
5090789AU049964272193518821835188492Ratregion
5089591AU049246214193438574934385963Ratregion
5082119AW251896200193480982534810025Ratregion
5087708Atp6e172193340346633403638Ratregion
5082245BI280983153193403509034035243Ratregion
5085619BQ199208160193478139234781552Ratregion
5082567BE119743163193334221233342375Ratregion
5085890BQ203573183193475667434756857Ratregion
5080768RH141770185192789037327890558Ratregion
5082735AW520830188193349879233499092Ratregion
5082863BI281208158193383101133831323Ratregion
5086539BE115145168193359999533600163Ratregion
5086612AA850397238193403474634034984Ratregion
5086628AI535550206193478999634790202Ratregion
5085141BQ209616161193769553137695692Ratregion
5083723AI010270146193444373534443881Ratregion
5086825AA956531175193532283935323014Ratregion
5503456CTCF_3772725193357039633571121Ratregion
5503722NUTF2_9060500193377202333772523Ratregion
5504566PMC305633P30193313659333137120Ratregion
5506092UniSTS:498356539193416451134165050Ratregion
5506068UniSTS:4982971521192821650528218026Ratregion
5506427UniSTS:479241540192941071229411252Ratregion
5506529E2F4_601796193318103033181826Ratregion
5506995fi15f09.x1323193553136035531683Ratregion
5507167UniSTS:224902153193528646435286617Ratregion
5499987UniSTS:236001131193770136337701494Ratregion
5499993UniSTS:235986204193377254633772750Ratregion
5499983UniSTS:235937211192911245329112664Ratregion
5499975UniSTS:235940201192823601928236220Ratregion
5500829STS-Z407031034192765877827659812Ratregion
5503532ATBF1_4388923193688098936881912Ratregion
5501251PMC166143P297192982035729820454Ratregion
5501429Psmb10132193383134233832044Ratregion
5501480D16S667E190193374742233747612Ratregion
5501546WI-11812143192981938629819529Ratregion
5501934MARC_17823-17824:1024943874:1491193687074236871233Ratregion
5501928MARC_17527-17528:1016478546:11350193546679135468141Ratregion
5501956MARC_20750-20751:1025022208:1515193356965833570173Ratregion
5502425RH124805270193782803637828306Ratregion
Position Markers

Flank 1: (D19Wox3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21927,530,207 - 27,530,329 (+)MAPPER
Rnor_6.01931,194,301 - 31,194,424NCBI
Rnor_5.01942,098,191 - 42,098,314UniSTS
Celera1927,038,980 - 27,039,103UniSTS
Cytogenetic Map19 RGD
Peak: (Nr3c2)
Rat AssemblyChrPosition (strand)Source
GRCr81947,619,853 - 47,964,089 (-)NCBI
mRatBN7.21930,715,634 - 31,059,885 (-)NCBI
mRatBN7.2 Ensembl1930,715,648 - 31,059,885 (-)Ensembl
UTH_Rnor_SHR_Utx1937,554,315 - 37,898,523 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01938,208,168 - 38,552,393 (-)NCBI
UTH_Rnor_WKY_Bbb_1.01940,460,411 - 40,809,228 (-)NCBI
Rnor_6.01934,408,275 - 34,761,003 (-)NCBI
Rnor_6.0 Ensembl1934,448,289 - 34,752,695 (-)Ensembl
Rnor_5.01945,287,442 - 45,639,834 (-)NCBI
RGSC_v3.41932,527,752 - 32,875,369 (-)NCBI
RGSC_v3.11932,532,632 - 32,880,250 (-)NCBI
Celera1930,192,512 - 30,534,995 (-)NCBI
Cytogenetic Map19q11NCBI
Flank 2: (D19Wox4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21937,947,207 - 37,947,399 (-)MAPPER
Rnor_6.01941,685,949 - 41,686,140NCBI
Rnor_5.01952,509,513 - 52,509,704UniSTS
RGSC_v3.41939,854,217 - 39,854,409RGD
RGSC_v3.41939,854,218 - 39,854,409UniSTS
RGSC_v3.11939,859,098 - 39,859,290RGD
Celera1937,350,737 - 37,350,926UniSTS
RH 3.4 Map19441.8UniSTS
RH 3.4 Map19441.8RGD
RH 2.0 Map19482.6RGD
Cytogenetic Map19q11-q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)192481604133061905Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Salc2


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Salc2  Saline consumption QTL 2  Sit2  Saline intake QTL 2  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details LOD scores for this QTL was 9.91 (VE 29.8%) in males; in females LOD for this QTL was 7.74 (VE 31.6%). 1302889
qtl_statistics_details This QTL was also associated with saline intake following adrenalectomy and treatment with DOC (deoxycorticosterone, a mineralocorticoid receptor ligand) with an LOD of 15.56 (VE 45.6%) in males and and LOD of 3.56 (VE 16.1%) in females. 1302889