Bvd4 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bvd4 (Brain ventricular dilatation QTL 4) Rattus norvegicus

Symbol: Bvd4
Name: Brain ventricular dilatation QTL 4
RGD ID: 1354588
Trait: brain ventricle morphology trait   (VT:0000822)    
Measurement Type: hydrocephalus severity score   (CMO:0001881)    
LOD Score: 5.31
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21753,498,828 - 82,479,847RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01756,224,296 - 86,731,080RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01754,261,257 - 88,435,496RGDRnor5.0
RGSC_v3.41762,026,925 - 93,930,006RGDRGSC3.4
RGSC_v3.11762,037,855 - 93,940,839RGD
Cross Type: backcrosstoH-Tx/Hcj
Strains Crossed: F344/NHsd HTX/Hcj 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
F344/NHsd  (IEA)
HTX/Hcj  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic analysis of inherited hydrocephalus in a rat model. Jones HC, etal., Exp Neurol 2004 Nov;190(1):79-90.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1564062Rpl27al1ribosomal protein L27A like 1175350348853504080Rat
1559869Lyzl1lysozyme-like 1175353043753543877Rat
41149856LOC120098025U2 spliceosomal RNA175366651953666669Rat
7742134LOC102552678uncharacterized LOC102552678175399708854016410Rat
621831BambiBMP and activin membrane-bound inhibitor175412125154125816Rat
15641294930596D02Rikl2RIKEN cDNA 4930596D02 gene like 2175415157254154198Rat
1310644Cul2cullin 2175416909354210197Rat
11403554LOC10834857760S ribosomal protein L29 pseudogene175418631254187090Rat
11359972LOC108348578uncharacterized LOC108348578175423139954239004Rat
2402CremcAMP responsive element modulator175423888954305989Rat
6498435Mki67-ps1marker of proliferation Ki-67, pseudogene 1175441415554415827Rat
1589712Hdac1-ps12Histone deacetylase 1, pseudogene 12175441745054419389Rat
2324280Epc1enhancer of polycomb homolog 1175450335854594444Rat
41373608LOC120097886ral guanine nucleotide dissociation stimulator-like175466487154667458Rat
9147085Fam95cfamily with sequence similarity 95 member C175468104054721106Rat
41319530LOC120097781ral guanine nucleotide dissociation stimulator-like175472078054728358Rat
41289469LOC120097863ral guanine nucleotide dissociation stimulator-like175474578054748331Rat
7544805LOC102553208ral guanine nucleotide dissociation stimulator-like175478059154783184Rat
1585457Ralgdsl8ral guanine nucleotide dissociation stimulator like 8175480056554808145Rat
15608604921524L21Rikl1RIKEN cDNA 4921524L21 gene like 1175480818454847675Rat
1589711Rps14-ps4ribosomal protein S14, pseudogene 4175490401954904610Rat
1308905Rab18RAB18, member RAS oncogene family175494409954976093Rat
1305652Mkxmohawk homeobox175507707355156877Rat
1306933Odad2outer dynein arm docking complex subunit 2175521687755409872Rat
41152666Ddx5-ps1DEAD-box helicase 5, pseudogene 1175524545455259642Rat
1593823Psme1l1proteasome activator subunit 1 like 1175529762755298808Rat
41151572LOC120098020U2 spliceosomal RNA175541452255414611Rat
1305675Mpp7MAGUK p55 scaffold protein 7175543993955706810Rat
41063315LOC120098009small Cajal body-specific RNA 20175582035855820490Rat
1562407WacWW domain containing adaptor with coiled-coil175592268655984286Rat
1586464Ddx5-ps3DEAD-box helicase 5, pseudogene 3175606927856070533Rat
1586445Hspa8-ps22heat shock protein family A (Hsp70) member 8, pseudogene 22175613329856135340Rat
1586431Rpl11-ps8ribosomal protein L11, pseudogene 8175617739356231616Rat
41139904LOC120097995small nucleolar RNA SNORA17175621668056216814Rat
1586418Snrpnl1small nuclear ribonucleoprotein polypeptide N like 1175637209656373049Rat
2323728Snurf-ps2SNRPN upstream open reading frame, pseudogene 2175637209656373411Rat
9098363LOC103694114DNA repair protein RAD51 homolog 1 pseudogene175669436556695323Rat
1589709Nsfl1c-ps1NSFL1 cofactor, pseudogene 1175705725957058451Rat
40985311Trnaa-agc37transfer RNA alanine (anticodon AGC) 37175719764257197722Rat
1560525Fzd8frizzled class receptor 8175731292457320551Rat
628621Gjd4gap junction protein, delta 4175734884457352601Rat
1565969Ccnycyclin Y175738500257512860Rat
6501948LOC100909729uncharacterized LOC100909729175751315957514759Rat
9152346LOC103690071interaptin-like175762154257900975Rat
9472036PotedPOTE ankyrin domain family member D175794212457975149Rat
1566097Anlnl1anillin, actin binding protein-like 1175798534057995824Rat
621272Lgals8galectin 8175802465258052764Rat
1564769Heatr1HEAT repeat containing 1175805328858093895Rat
1308097Actn2actinin alpha 2175814333458210622Rat
41054517Trnas-aga47transfer RNA serine (anticodon AGA) 47175819156958191644Rat
621283Mtr5-methyltetrahydrofolate-homocysteine methyltransferase175821999858308560Rat
41377181LOC120097915uncharacterized LOC120097915175824370458247835Rat
41125104LOC120097928SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like175827429558278695Rat
41267736Rps7-ps15ribosomal protein S7, pseudogene 15175832060758324029Rat
620314Ryr2ryanodine receptor 2175838992558975641Rat
41332867LOC120098026small nucleolar RNA U3175842230958422433Rat
628708Zp4zona pellucida glycoprotein 4175900564959012202Rat
41156892LOC120097906uncharacterized LOC120097906175913071959138035Rat
41243501LOC120097813uncharacterized LOC120097813175933758259355633Rat
1589973Nsa2-ps11NSA2 ribosome biogenesis factor, pseudogene 11175962502059625946Rat
2343Chrm3cholinergic receptor, muscarinic 3176000513760467250Rat
1303252Zmynd11zinc finger, MYND-type containing 11176054266960631913Rat
1560155Dip2cdisco-interacting protein 2 homolog C176064734661032467Rat
11470481LOC108348621uncharacterized LOC108348621176070470960733102Rat
41219403Adi1-ps1acireductone dioxygenase 1, pseudogene 1176098927360989828Rat
9362362LOC10369411660S ribosomal protein L22 pseudogene176108489261085261Rat
1310713Larp4bLa ribonucleoprotein 4B176113866361217423Rat
41242720LOC120097870uncharacterized LOC120097870176124753661263382Rat
620783Gtpbp4GTP binding protein 4176130803361328184Rat
1559783Idi2isopentenyl-diphosphate delta isomerase 2176133138561334987Rat
41339945LOC120097764isopentenyl-diphosphate delta-isomerase 2-like176133862261349795Rat
1564347Idi2l2isopentenyl-diphosphate delta isomerase 2 like 2176137285361386459Rat
7617990LOC102552003uncharacterized LOC102552003176138493861387088Rat
9378476LOC103690178nucleolar GTP-binding protein 1-like176140456161417990Rat
9352023Idi2-ps1isopentenyl-diphosphate delta isomerase 2, pseudogene 1176142035761423924Rat
7740538LOC102550988isopentenyl-diphosphate delta-isomerase 2-like176145192061457799Rat
2322079LOC100360477hypothetical protein LOC100360477176147703761483516Rat
1589708Eef1g-ps11eukaryotic translation elongation factor 1 gamma, pseudogene 11176149758161498918Rat
7541008LOC102551575isopentenyl-diphosphate delta-isomerase 2-like176150429461507015Rat
1564999Idi2l3isopentenyl-diphosphate delta isomerase 2 like 3176151813861535484Rat
40959177Eef1g-ps8eukaryotic translation elongation factor 1 gamma, pseudogene 8176155698761562152Rat
6489760LOC100911936uncharacterized LOC100911936176156873761578142Rat
621835Idi1isopentenyl-diphosphate delta isomerase 1176162959261637357Rat
1306189Wdr37WD repeat domain 37176163725861703677Rat
621519Adarb2adenosine deaminase RNA specific B2176175043762300984Rat
7646455LOC102552293uncharacterized LOC102552293176194057461982314Rat
2325073Elobl1elongin B like 1176220896662209274Rat
11485055LOC108348614uncharacterized LOC108348614176329355663296453Rat
1585155Moap1-ps1modulator of apoptosis 1, pseudogene 1176338020763381740Rat
6497110Atp5mg-ps7ATP synthase membrane subunit g, pseudogene 7176363638763636687Rat
1589707Mcm7-ps1minichromosome maintenance complex component 7, pseudogene 1176366263563666781Rat
61893Pfkpphosphofructokinase, platelet176372974363794026Rat
1310998Pitrm1pitrilysin metallopeptidase 1176379567063827317Rat
1589706Zzz3-ps1zinc finger, ZZ-type containing 3, pseudogene 1176387960163881399Rat
11406958LOC108348582uncharacterized LOC108348582176401660964037489Rat
1589705Smarce1-ps3SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 3176408583764087092Rat
1595871Hspa8-ps5heat shock protein family A (Hsp70) member 8, pseudogene 5176409395964095858Rat
62389Klf6KLF transcription factor 6176453945664548451Rat
41363710LOC120098005small nucleolar RNA SNORA17176467024664670368Rat
41220445LOC120097984small nucleolar RNA SNORA48176469517764695319Rat
7686967LOC102554523uncharacterized LOC102554523176483146264865907Rat
41200047LOC120097925uncharacterized LOC120097925176494795064970825Rat
41048340LOC120097919uncharacterized LOC120097919176555315765559311Rat
41044963LOC120098044U6 spliceosomal RNA176557634565576451Rat
11401537LOC108348616uncharacterized LOC108348616176571556665723420Rat
1309599Akr1e2aldo-keto reductase family 1, member E2176573590965750441Rat
41341161Srsf3-ps9serine and arginine rich splicing factor 3, pseudogene 9176575656765759644Rat
1311841Akr1c2aldo-keto reductase family 1, member C2176575977865808013Rat
1306847Akr1c1aldo-keto reductase family 1, member C1176581047465837385Rat
1564865AKR1C3l1aldo-keto reductase family 1 member C3-like 1176584758065881488Rat
1559604Akr1c12l1aldo-keto reductase family 1, member C12-like 1176593783465948344Rat
1589704Vdac1-ps6voltage-dependent anion channel 1, pseudogene 6176595464865959462Rat
1308232Akr1c13aldo-keto reductase family 1, member C13176596418665997598Rat
1562954Akr1c19aldo-keto reductase family 1, member C19176600135866027226Rat
1359406Akr1c12aldo-keto reductase family 1, member C12176604537666061496Rat
41218517Slc23a2-ps1solute carrier family 23 member 2, pseudogene 1176607559066082748Rat
708428Akr1c3aldo-keto reductase family 1, member C3176611097066127867Rat
708361Akr1c14aldo-keto reductase family 1, member C14176615628666173277Rat
1307514Akr1c15aldo-keto reductase family 1, member C15176618149366208090Rat
41155374LOC120097737uncharacterized LOC120097737176620708866215750Rat
1562213Ucn3urocortin 3176630974866315996Rat
1305289Tubal3tubulin, alpha-like 3176632373366332423Rat
1305034Net1neuroepithelial cell transforming 1176634125166370445Rat
9474191LOC103694125uncharacterized LOC103694125176639104866393245Rat
1310047Calml5calmodulin-like 5176639443366395352Rat
1305499Calml3calmodulin-like 3176641984466423083Rat
41186790LOC120097832uncharacterized LOC120097832176650409166507987Rat
1582824Nip7-ps15nucleolar pre-rRNA processing protein NIP7, pseudogene 15176652539566526387Rat
1564088Rpl29-ps3ribosomal protein L29, pseudogene 3176655246866553027Rat
1310387Asb13ankyrin repeat and SOCS box-containing 13176656465366583365Rat
1564456Tasor2transcription activation suppressor family member 2176658355466650127Rat
61802Gdi2GDP dissociation inhibitor 2176664961666676299Rat
41312831LOC120097798uncharacterized LOC120097798176668645566688084Rat
41298822LOC120097902uncharacterized LOC120097902176671331566716474Rat
41193472LOC120097862uncharacterized LOC120097862176672547766727913Rat
1311405Ankrd16ankyrin repeat domain 16176673532566748533Rat
1306298Fbh1F-box DNA helicase 1176674950666787590Rat
1305149Il15rainterleukin 15 receptor subunit alpha176680230066831973Rat
41401159Arpc5l-ps2actin related protein 2/3 complex, subunit 5-like, pseudogene 2176683672066837695Rat
2895Il2rainterleukin 2 receptor subunit alpha176684997466898665Rat
7519062Psmc6-ps1proteasome 26S subunit, ATPase 6, pseudogene 1176693180566937314Rat
1311208Rbm17RNA binding motif protein 17176693714066954034Rat
619776Pfkfb36-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3176698362967064702Rat
41387287LOC120098047U6 spliceosomal RNA176700865167008754Rat
41105207LOC120097756uncharacterized LOC120097756176714395667148274Rat
620968Prkcqprotein kinase C, theta176724639467379049Rat
7532113LOC102552793uncharacterized LOC102552793176742484467433157Rat
1564416Hnrnpa1-ps26heterogeneous nuclear ribonucleoprotein A1, pseudogene 26176744541467446386Rat
41134540LOC120097974small nucleolar RNA SNORA68176753442767534557Rat
6486636Atp5f1c-ps4ATP synthase F1 subunit gamma, pseudogene 4176758833167588976Rat
11517690LOC108348487nuclear cap-binding protein subunit 2 pseudogene176761583867621169Rat
2321948Prmt1-ps1protein arginine methyltransferase 1, pseudogene 1176762545467626376Rat
41360715LOC120097741uncharacterized LOC120097741176768061267766669Rat
7578249LOC102552867uncharacterized LOC102552867176768083067715001Rat
2321902Fth1-ps3ferritin heavy chain 1, pseudogene 3176785430467855385Rat
1305027Sfmbt2Scm-like with four mbt domains 2176793429668128905Rat
4888560Mir466dmicroRNA 466d176800326768003359Rat
9685628Mir466cmicroRNA 466c176801786468017942Rat
14398573Mir466b-2microRNA mir-466b-2176803272868032809Rat
14398587Mir466b-1microRNA mir-466b-1176803575868035843Rat
41260975LOC120097910uncharacterized LOC120097910176815475868158084Rat
40950915LOC120097951uncharacterized LOC120097951176823747168242527Rat
1591485Itih5inter-alpha-trypsin inhibitor heavy chain 5176824811568352216Rat
41060414LOC120097950uncharacterized LOC120097950176826388568273069Rat
41184525LOC120097849uncharacterized LOC120097849176835628368360010Rat
1565426Itih2inter-alpha-trypsin inhibitor heavy chain 2176837557468411849Rat
1596107KinKin17 DNA and RNA binding protein176841348368431392Rat
620011Atp5f1cATP synthase F1 subunit gamma176842392768446169Rat
41303092LOC120097988small nucleolar RNA SNORA17176842872368428851Rat
7541609LOC102546431uncharacterized LOC102546431176844292268457029Rat
2324594Taf3TATA-box binding protein associated factor 3176845538968608367Rat
41224909LOC120097843uncharacterized LOC120097843176863732268641249Rat
621250Gata3GATA binding protein 3176864376068666000Rat
7745365LOC102546657uncharacterized LOC102546657176895481068996252Rat
41264459LOC120097778uncharacterized LOC120097778176897314669007426Rat
7751577LOC102546763uncharacterized LOC102546763176926251069321716Rat
40997098LOC120097918uncharacterized LOC120097918176941217069418345Rat
41049176LOC120097994small nucleolar RNA SNORA17176968051769680648Rat
41205386LOC120098030U4 spliceosomal RNA176990167369901783Rat
41096094LOC120097900uncharacterized LOC120097900176996062769985753Rat
2319552Npm1-ps16nucleophosmin 1, pseudogene 16177078474070785697Rat
2319016Snrpe-ps2small nuclear ribonucleoprotein polypeptide E, pseudogene 2177089991670900190Rat
68347Celf2CUGBP, Elav-like family member 2177090446271729072Rat
41116272LOC120098055U6 spliceosomal RNA177095262870952728Rat
7656762LOC102547255uncharacterized LOC102547255177129575871309918Rat
11389928LOC108348587uncharacterized LOC108348587177174963471753741Rat
1311786Usp6nlUSP6 N-terminal like177182843371956878Rat
41014789LOC120098050U6 spliceosomal RNA177191544671915547Rat
9206913LOC103694128small EDRK-rich factor 2 pseudogene177198121171981386Rat
1589147Echdc3enoyl CoA hydratase domain containing 3177207069772093519Rat
1586830Proser2proline and serine rich 2177215196172187524Rat
1309178Upf2UPF2, regulator of nonsense mediated mRNA decay177222457572335896Rat
9084032LOC103694151cytochrome c oxidase subunit 6B1 pseudogene177235414272355238Rat
1308092Dhtkd1dehydrogenase E1 and transketolase domain containing 1177235520172406725Rat
1305948Sec61a2SEC61 translocon subunit alpha 2177240757472445630Rat
1359284Nudt5nudix hydrolase 5177243569072459008Rat
619766Cdc123cell division cycle 123177245927072503316Rat
7693725LOC102551026uncharacterized LOC102551026177252156572528731Rat
7666974LOC102551092uncharacterized LOC102551092177255979372562834Rat
1560691Camk1dcalcium/calmodulin-dependent protein kinase ID177258189972982704Rat
11471276LOC108348589uncharacterized LOC108348589177296402572998728Rat
1559473Ccdc3coiled-coil domain containing 3177303189173135173Rat
11502719LOC108348590uncharacterized LOC108348590177315579173158095Rat
628886Optnoptineurin177320957273260251Rat
1311330Mcm10minichromosome maintenance 10 replication initiation factor177326378873288346Rat
1308977Ucmaupper zone of growth plate and cartilage matrix associated177329397773303709Rat
620317Phyhphytanoyl-CoA 2-hydroxylase177332946173346359Rat
40936831LOC120097916uncharacterized LOC120097916177334795573356920Rat
1311182Sephs1selenophosphate synthetase 1177335443573382803Rat
1305898Bend7BEN domain containing 7177348321273566221Rat
9410960LOC103694152cyclin-dependent kinases regulatory subunit 2 pseudogene177357977273598021Rat
708550Prpf18pre-mRNA processing factor 18177363056073661210Rat
11478102Fbxl14-ps1F-box and leucine-rich repeat protein 14, pseudogene 1177365727373659619Rat
1309050Frmd4aFERM domain containing 4A177366778774258487Rat
41299169LOC120097893uncharacterized LOC120097893177372224873725978Rat
41380062LOC120097894uncharacterized LOC120097894177397490173981948Rat
41189467LOC120097896uncharacterized LOC120097896177407919274091043Rat
7723752LOC102554651uncharacterized LOC102554651177425872074261283Rat
1561482Fam107bfamily with sequence similarity 107, member B177447860874685027Rat
11474069LOC108348592uncharacterized LOC108348592177458147374586792Rat
41145682LOC120097880uncharacterized LOC120097880177460550974623485Rat
41239690LOC120097879uncharacterized LOC120097879177466319074672471Rat
1307600Cdnfcerebral dopamine neurotrophic factor177471456474728639Rat
7640129Msantd7Myb/SANT DNA binding domain containing 7177472892774735527Rat
1303296Hspa14heat shock protein family A (Hsp70) member 14177472894574749727Rat
40957286LOC120097881uncharacterized LOC120097881177474429974747340Rat
1306969Suv39h2SUV39H2 histone lysine methyltransferase177475629074775332Rat
708574Dclre1cDNA cross-link repair 1C177477582874810089Rat
1642516Mt1-ps3metallothionein 1, pseudogene 3177478665274787040Rat
1583655Meig1meiosis/spermiogenesis associated 1177481079174828433Rat
41389710LOC120097878uncharacterized LOC120097878177483554374849584Rat
1595454Rpl34-ps1ribosomal protein L34, pseudogene 1177487470674875132Rat
621115Olaholeoyl-ACP hydrolase177487765174902517Rat
1564164Acbd7acyl-CoA binding domain containing 7177490393674909977Rat
1307474Rpp38ribonuclease P/MRP subunit p38177491406674917742Rat
1303175Nmt2N-myristoyltransferase 2177491783374964788Rat
40981689LOC120098027U4 spliceosomal RNA177495361474953754Rat
1594172Fam171a1family with sequence similarity 171, member A1177502458275148348Rat
621634Itga8integrin subunit alpha 8177530400475501510Rat
40953259LOC120097958uncharacterized LOC120097958177539144475396471Rat
40940378LOC120097971U7 small nuclear RNA177551964375519707Rat
9187604LOC103694135uncharacterized LOC103694135177552647575557758Rat
1309605Mindy3MINDY lysine 48 deubiquitinase 3177554528675623884Rat
11394977Sec61gl2Sec61 translocon subunit gamma like 2177563844975638655Rat
41202623LOC120097970U7 small nuclear RNA177568080275680865Rat
7727712LOC102548534uncharacterized LOC102548534177586838275954711Rat
7746419LOC102555562uncharacterized LOC102555562177600056976003218Rat
11369392LOC108348618uncharacterized LOC108348618177604398076055239Rat
61313Pterphosphotriesterase related177605838876119633Rat
1591795C1ql3complement C1q like 3177611934476129170Rat
1591781Rsu1Ras suppressor protein 1177612877476377515Rat
68355Cubncubilin177638504676593133Rat
7525245LOC102550536uncharacterized LOC102550536177658271976584183Rat
1306292Trdmt1tRNA aspartic acid methyltransferase 1177660196676646104Rat
621646Vimvimentin177666870176677186Rat
1303161St8sia6ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6177674075576884178Rat
1595507Hacd13-hydroxyacyl-CoA dehydratase 1177708150877106114Rat
1564499Stamsignal transducing adaptor molecule177712023577166173Rat
1590637Tmem236transmembrane protein 236177718091977241258Rat
1309353Mrc1mannose receptor, C type 1177724918777330857Rat
2325483Mir511microRNA 511177727941577279493Rat
1309305Slc39a12solute carrier family 39 member 12177735376177440384Rat
67385Cacnb2calcium voltage-gated channel auxiliary subunit beta 2177756463077910000Rat
41143387LOC120098018U2 spliceosomal RNA177774839777748583Rat
41353002Trnaa-cgc5transfer RNA alanine (anticodon CGC) 5177782179777821869Rat
1309535Nsun6NOP2/Sun RNA methyltransferase 6177791237477955694Rat
1305569Arl5bARF like GTPase 5B177795586477979895Rat
2320914Csnk1a1-ps1casein kinase 1, alpha 1, pseudogene 1177826727878267954Rat
2320868Malrd1MAM and LDL receptor class A domain containing 1177841881979131015Rat
41399030LOC120097989small nucleolar RNA SNORA17177845383778453970Rat
41009648LOC120098039U6 spliceosomal RNA177882737578827481Rat
1305962Plxdc2plexin domain containing 2177916923879594279Rat
1308315Neblnebulette178011389180466331Rat
1589380Actb-ps3actin, beta, pseudogene 3178052668180527538Rat
7693888LOC102553115uncharacterized LOC102553115178061876480641022Rat
11360801LOC108353137uncharacterized LOC108353137178078547380803132Rat
1588196Skida1SKI/DACH domain containing 1178079824180809062Rat
1310874Mllt10MLLT10, histone lysine methyltransferase DOT1L cofactor178082187080949349Rat
2322144Dnajc1DnaJ heat shock protein family (Hsp40) member C1178095520981112025Rat
11375075LOC108348596uncharacterized LOC108348596178105294581056216Rat
41056436LOC120097882uncharacterized LOC120097882178116188281166210Rat
9155296LOC10369415560S ribosomal protein L29-like178124276381243083Rat
11483937Trnan-guu13transfer RNA asparagine (anticodon GUU) 13178124993081250003Rat
41161195LOC120097883uncharacterized LOC120097883178126725581268961Rat
735116Commd3COMM domain containing 3178132744481331191Rat
1307403Bmi1BMI1 proto-oncogene, polycomb ring finger178133217581341625Rat
1305616Spag6sperm associated antigen 6178135237281401504Rat
41291069LOC120097847uncharacterized LOC120097847178146377181468391Rat
621708Pip4k2aphosphatidylinositol-5-phosphate 4-kinase type 2 alpha178149666981668180Rat
2320114LOC100361451hypothetical LOC100361451178178888781839561Rat
2319961Armc3armadillo repeat containing 3178181408781917534Rat
9381442LOC103694139heterogeneous nuclear ribonucleoprotein A3 pseudogene178182550681826541Rat
6488061Pimregl1PICALM interacting mitotic regulator like 1178186420781868932Rat
7552804LOC102556079uncharacterized LOC102556079178195329481965306Rat
1306026Msrb2methionine sulfoxide reductase B2178197437882000044Rat
621709Ptf1apancreas associated transcription factor 1a178205128182053135Rat
1598031C17h10orf67similar to human chromosome 10 open reading frame 67178206246182174401Rat
1563344Otud1OTU deubiquitinase 1178225992082262770Rat
41020367G3bp1-ps3G3BP stress granule assembly factor 1, pseudogene 3178226792182282303Rat
41352910LOC120098007small nucleolar RNA SNORA17178229376182293861Rat
11407481LOC108348625uncharacterized LOC108348625178242284582430429Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10348D17Mit4231176046341260463643Ratregion
10349D17Arb7237176046340560463642Ratregion
10350D17Wox12137176046350060463637Ratregion
10351D17Wox13150176046348360463633Ratregion
10490D5Uwm5171177589418175894750Ratregion
33860D17Mit10231175523786855238103Ratregion
33939D17Mit11146177806876478068910Ratregion
34391D17Mgh9148176811706768117215Ratregion
33707D17Mit5281177085256570852846Ratregion
36211D17Rat34159176227078862270949Ratregion
36315D17Rat41175176883571268835887Ratregion
36329D17Rat32119175583607655836425Ratregion
36329D17Rat32119175583630655836425Ratregion
37234D17Rat97239176210933362109574Ratregion
37352D17Rat85201178107631681076517Ratregion
37404D17Rat82197176877890768779104Ratregion
35258D17Rat36173176364000963640182Ratregion
35274D17Rat45126177100332571003451Ratregion
35473D17Rat58143176959919769599340Ratregion
36844D17Rat48163177750219477502357Ratregion
36996D17Rat31162175683672856836890Ratregion
37068D17Rat42141177121497771215120Ratregion
37762D17Rat170176175949767959497857Ratregion
37926D17Rat62121177242009472420215Ratregion
36392D17Mgh12140177604425876044398Ratregion
36526D17Rat46131177254020672540337Ratregion
36783D17Rat172126176759541267595534Ratregion
34821D17Rat56122175648264756482769Ratregion
34989D17Rat39135176570358065703715Ratregion
35052D17Rat33135176011018860110323Ratregion
35062D17Rat30177175812456458124741Ratregion
35136D17Rat37167176475909664759263Ratregion
35585D17Rat151166176078142660781592Ratregion
35687D17Rat47126177395087173951021Ratregion
35687D17Rat47126177395089573951021Ratregion
35707D17Rat43147177106086271061009Ratregion
35735D17Rat49161178120815481208315Ratregion
35827D17Rat52179178115374281153923Ratregion
35883D17Rat44127177015677770156904Ratregion
35893D17Rat38158176355506163555219Ratregion
39692D17Rat139133176880741568807548Ratregion
39786D17Rat129167176869929768699464Ratregion
37998D17Rat96203176704777767047980Ratregion
40400D17Rat148141175803800658038147Ratregion
38464D17Rat79214175349882853499042Ratregion
38780D17Rat64130175558322555583355Ratregion
40114D17Rat122117176000088060000997Ratregion
40198D17Rat123171175876879458768965Ratregion
40316D17Rat124134176117751661177650Ratregion
38798D17Rat150220175801245258012678Ratregion
38894D17Rat60238177711288277113120Ratregion
39318D17Rat65386178247946182479847Ratregion
39432D17Rat130200177048107670481278Ratregion
39488D17Rat127245176455464964554895Ratregion
39566D17Rat126246176419468864194936Ratregion
42045D17Arb5127175869183558691962Ratregion
41510D17Rat128146176405521464055360Ratregion
42418D17Rat68171175863292958633100Ratregion
42419D17Rat180240177145068271450924Ratregion
41084D17Rat131201178190326481903471Ratregion
41762D17Rat154214178129271181292925Ratregion
43098D17Rat149135175816531158165446Ratregion
43101D17Rat152234176855090968551143Ratregion
43102D17Rat153228176961631469616542Ratregion
43103D17Rat176214178179470381794915Ratregion
43105D17Rat173493178025196780252477Ratregion
43106D17Rat175202178122939081229592Ratregion
43107D17Rat177214178208681382087027Ratregion
45480D17Got79108175881625858816366Ratregion
45481D17Got77108175854148258541590Ratregion
45482D17Got75218175996373459963952Ratregion
45484D17Got74191176001893760019130Ratregion
45485D17Wox9108175724672357246843Ratregion
45487D17Hmgc2200176108840561088605Ratregion
45488D17Got80171176348992063490091Ratregion
45489D17Got124153176437868564378838Ratregion
45491D17Got87124176691767666917800Ratregion
45494D17Got82290176794876467949054Ratregion
45495D17Got88150176761546867615619Ratregion
45496D17Wox6154176881769968817853Ratregion
45497D17Got84218176769069667690914Ratregion
45498D17Got89218176838026868380486Ratregion
45499D17Wox21179176881769168817870Ratregion
45500D17Got91177177100332971003506Ratregion
45502D17Got92164177289639872896562Ratregion
45504D17Got94146177444277374442921Ratregion
45505D17Got93205177491345174913656Ratregion
45506D17Got96229177598330875983537Ratregion
45507D17Got95152177627942076279572Ratregion
45508D17Got100196177620105576201249Ratregion
45509D17Wox7185177784891177849094Ratregion
45511D17Got111124178099355180993675Ratregion
45513D17Got112195178091093480911129Ratregion
45514D17Wox8113178204612782046240Ratregion
45515D17Got109167178215649682156663Ratregion
60772D17Wox4162175813056958130741Ratregion
60135D17Got105209178246804482468250Ratregion
60137D17Got110125178192852981928654Ratregion
60138D17Got113112178091052380910635Ratregion
60145D17Got122181177839959878399781Ratregion
60152D17Got66179175403232454032503Ratregion
60153D17Got67225175409256754092794Ratregion
60154D17Got69196175473390454734092Ratregion
60156D17Got71144175793532457935468Ratregion
60156D17Got71144175793532457935468Ratregion
60157D17Got72269175648264756482916Ratregion
60158D17Got73269175623448356234752Ratregion
60161D17Got97279177891584078916119Ratregion
60162D17Got98105177597687575976982Ratregion
60163D17Got99174177777866877778842Ratregion
67819D17Uwm2284177236590772366191Ratregion
625788D17Got85145176748978267489927Ratregion
625794D17Got12598175442144154421539Ratregion
629582D17Got83206176683600366836209Ratregion
61300D17Mco3274175955501359555289Ratregion
67260D17Arb12297177790769977907996Ratregion
1556754D17Chm14199176878393768784138Ratregion
1556756D17Chm9196177177462171774817Ratregion
1556757D17Chm26237175589768755897924Ratregion
1556758D17Chm2221177097378470974005Ratregion
1631795D17Got216106176103579161035895Ratregion
1628173D17Got209176177058758770587763Ratregion
1628173D17Got209176177058758770588182Ratregion
1628173D17Got209176177058771070587763Ratregion
1635830D17Uwm3166175692621756926383Ratregion
1635873D17Wox31196176617551566175711Ratregion
1636106D17Got218140177954594379546083Ratregion
1637583D17Got22688176836697968367067Ratregion
1633898D17Got213169177096213170962300Ratregion
7192418VIM250177667280576673055Ratregion
7394839rs107058737175381318553813185Ratregion
7394840rs105019230175454246454542464Ratregion
7394842rs65978719175639647756396477Ratregion
7394844rs106534785176114994661149946Ratregion
7205844Ddx50175524549555246484Ratregion
7206732MARC_4455-4456:966894277:1115176370976963709885Ratregion
5036037Ptf1a422178205225982052681Ratregion
5038724AA93023279175427528154275360Ratregion
5038726AW04837697175738158457381681Ratregion
5038868RH127379220176667669266676912Ratregion
5039274RH127612211176379369263793903Ratregion
5039010RH127461180175598408255984262Ratregion
5036763AU049126171177712704277127213Ratregion
5035614SGC32110131178095527080955401Ratregion
5028629RH124435278175805806058058338Ratregion
7206236Fzd882175731770057317782Ratregion
5028723D5S2467176177298252272982698Ratregion
5031508AU048093284176215714862157432Ratregion
5031510AU048087123177433692874337051Ratregion
5034073RH141259197177709555377095750Ratregion
5026162RH131151191177708170377081894Ratregion
5026168RH131175202177530411075304312Ratregion
5028769RH142262199176453980364540002Ratregion
5031690AU047474241175760185857602099Ratregion
5034482BF41563097176054527560545372Ratregion
5034484BF415683149177195763071957779Ratregion
5034494BF41597395178042618880426283Ratregion
5026498RH132443219177797959477979813Ratregion
5029107RH143550231177402080574021036Ratregion
5029145RH143686101178149732481497425Ratregion
5031906AU046752267176827789368278160Ratregion
5034754AI009647198176664861366648811Ratregion
5026788RH133530194177477348374773677Ratregion
5029510AI556320201175430366954303870Ratregion
5032339AV23163481177958514179585223Ratregion
5035158AW532891155177514501075145165Ratregion
5027119RH70526130175944187759442007Ratregion
5027213AI79031887177611889476118981Ratregion
5029791BE102654176176680861266808788Ratregion
5029987AI072301216177477703174777247Ratregion
5035272AI704007203177335728273357485Ratregion
5030213BG379597109177366790573668014Ratregion
5032961RH137116182177491788274918064Ratregion
5025108C86813234176453956564539798Ratregion
5030345BF402956144177151835671518500Ratregion
5033159RH137808176175512602155126197Ratregion
502787519.MMHAP16FRG7.seq183175691302956913212Ratregion
5030427BF397554157177260647472606631Ratregion
5033191RH137920240177493867174938910Ratregion
5025354RH127990192177491752974917721Ratregion
5025368RH128044190177661278076612970Ratregion
5030567BE113290543178093805180938594Ratregion
5030617BE113707158176656501366565171Ratregion
5030623BI301335218177511063975110857Ratregion
5033465RH138936137177172813271728269Ratregion
5033507RH139079145176837557368375718Ratregion
5028129D11Mit209114177189982371899938Ratregion
5028318D10S1559125175598164855981773Ratregion
5028318D10S1559125175598164855981773Ratregion
5033703RH139807218177256256572562783Ratregion
5028499AI503754101175434517154345273Ratregion
5028567C76891232175789663457896866Ratregion
5028567C76891232175789663457896866Ratregion
5054877RH143476127177759880177598928Ratregion
5055083RH143596165175834096158341126Ratregion
5053671RH142783108176064869960648807Ratregion
5055971RH144108157175595779755957954Ratregion
5056007RH144129238178132840581328643Ratregion
5056407RH144360167177112539771125564Ratregion
5053843RH142882118177635368876353806Ratregion
5056751RH144559173175536049955360672Ratregion
5056847RH144615181177776698477767165Ratregion
5057390AA893351152177612085176121003Ratregion
5057512AA819637210177172895171729161Ratregion
5055191RH143658209177612992976130138Ratregion
5055355RH143754261178226091082261171Ratregion
5055361RH143757157176615702466157181Ratregion
5054587RH143310241176163101761631258Ratregion
5059514BE097150166177770870277708868Ratregion
5057574BE095613153177169591771696070Ratregion
5054953RH143521210177612887276129082Ratregion
5058020BF386478158177716624277166400Ratregion
5056709RH144534289177418086174181150Ratregion
5056465RH144394241175751447757514718Ratregion
5058090BE101931150178022609780226247Ratregion
5058874BI278109189177230025172300440Ratregion
5058878BI278113177177368294773683124Ratregion
5055215RH143672144177798188877982032Ratregion
5059028BE102708185178046198380462168Ratregion
5059932BI279148181177958999379590174Ratregion
5059962BF388238162177151911371519275Ratregion
5049876RH133733199177767327577673474Ratregion
5049968RH133786201177243425272434453Ratregion
5050130RH133879218177243388472434102Ratregion
5052271M64279180178134118181341361Ratregion
5053201RH142512143178160583581605978Ratregion
5050500RH134092185175415401354154198Ratregion
5050586RH134141164175821329858213462Ratregion
5053703RH142802124177613092376131047Ratregion
5049820RH133700185176667549866675683Ratregion
5051052RH134411220176724657967246799Ratregion
5054061RH143008120176685005766850177Ratregion
5050252RH133949206176898922568989431Ratregion
5051318AI25616180177332930873329389Ratregion
5051423AW214366123176762553267625655Ratregion
5053361RH142604161176133161861331779Ratregion
5053361RH142604161176133161861331779Ratregion
5051711RH94613100175430301654303116Ratregion
5040790RH128485184176454238964542573Ratregion
5044366RH130561208176162966161629869Ratregion
5044822RH130823211177182845471828665Ratregion
5041356RH128810194176637012266370316Ratregion
5044046RH130379215177183164271831857Ratregion
5044072RH130394219177366092673661145Ratregion
5045974RH131486217175897533058975547Ratregion
5048780RH133101187175544014855440335Ratregion
5044462RH130616214176642277466422988Ratregion
5044942RH130892198176881994968820147Ratregion
5044916RH130877218177218713472187352Ratregion
5047426RH132321190175521923955219429Ratregion
5045006RH130929182177477599774776179Ratregion
5045114RH130992183177240621372406396Ratregion
5048952RH133201184177303350873033692Ratregion
5048992RH133224405177233642672336832Ratregion
5045870RH131426188177335801073358198Ratregion
5047888RH132586192176866504468665236Ratregion
5047900RH132593201177328707473287275Ratregion
5047994RH132647216177303507073035286Ratregion
5049240RH133366183176678731066787493Ratregion
5046914RH132027200177328749073287690Ratregion
5049684RH133622219178186528781865506Ratregion
5047152RH132163205178199975081999955Ratregion
5042152RH129270203176113881661139019Ratregion
5047382RH132295204177661077276610976Ratregion
5042584RH129523210175503230855032525Ratregion
5048538RH132961180176170344061703620Ratregion
5048610RH133003339176788537467885713Ratregion
5048644RH133022204177389025273890456Ratregion
5049640RH133597189176379581663796005Ratregion
5039398RH127683215176063156860631783Ratregion
5039572RH127782200175497580154976001Ratregion
5040538RH128341206175738139057381596Ratregion
5043004RH129774213176714642867146641Ratregion
5043012RH129778162178011498680115148Ratregion
5043168RH129871194177332914973329343Ratregion
5039842RH127938189176575009965750288Ratregion
5042274RH129340185177790837977908564Ratregion
5043340RH129970182177554536875545550Ratregion
7192213Ptf1a431178205226882052699Ratregion
5041112RH128669163177217541272175575Ratregion
5040310RH128210187177638518976385376Ratregion
5042898RH129710218176860699968607217Ratregion
5043054RH129805153177209334072093493Ratregion
5074908RH138288129175521572455215853Ratregion
5074912RH138290129177493795474938083Ratregion
5072132RH136669160178134090581341065Ratregion
5073854RH137677170177502473975024909Ratregion
5074104RH137824139175496197054962109Ratregion
5075346RH138541150177666793376668083Ratregion
5075406RH138575153177784640077846553Ratregion
5072284RH136760143177325997073260113Ratregion
5072340RH136792228176860810368608331Ratregion
5075926RH138877152177241878772418939Ratregion
5076230RH139055130178149877481498904Ratregion
5076346RH139122143176873649568736638Ratregion
5072750RH137031213176132859461328807Ratregion
5072750RH137031213176132859461328807Ratregion
5072750RH137031213176141788961418102Ratregion
5072750RH137031213176141788961418102Ratregion
5075336RH138536164175430424154304405Ratregion
5076080RH138967152176064864860648800Ratregion
5075592RH138683166177448508574485251Ratregion
5077668RH139889198176163748061637678Ratregion
5075740RH138769212176695436666954578Ratregion
5076264RH139075168177172848371728651Ratregion
5077324RH139691186178191726681917452Ratregion
5077882RH140014197177371757473717771Ratregion
5076518RH139222135177329424473294379Ratregion
5077842RH139991196176860810368608299Ratregion
5077952RH140056192176103023461030426Ratregion
5078564RH140417219177116013771160356Ratregion
5080010RH141331183177366981973670002Ratregion
5079126RH140750121178080246580802586Ratregion
5079136RH140756175176594808965948264Ratregion
5079136RH140756175176599734465997519Ratregion
5070600RH134595155178094883780948992Ratregion
5070740RH134677191177958838679588577Ratregion
5070886RH134762188176639463566394823Ratregion
5080262RH141478150177716574077165890Ratregion
5078810RH140565180178081565580815835Ratregion
5071338RH135024203178226238282262585Ratregion
5073724RH137602140178035836380358503Ratregion
5070568RH134576184177965512479655308Ratregion
5073916RH137713132177171821571718347Ratregion
5073222RH137311180175738484357385023Ratregion
5071912RH135357181177268207972682260Ratregion
5074268RH137918182177284054172840723Ratregion
5074446RH138021203177790743377907636Ratregion
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5073628RH137546156178080725680807412Ratregion
5073710RH137593154176175060561750759Ratregion
5072334RH136789120178191733281917452Ratregion
5072448RH136855214176825227968252493Ratregion
5061716BF40256699177265993272660031Ratregion
5064966BE108794160176656245166562611Ratregion
5066928AU048067297175536897755369274Ratregion
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5067250AU047870271175394697153947242Ratregion
5067416AU047762134175558319555583329Ratregion
5067566AU047668132177900483379004936Ratregion
5067892AU047473254176894229368942771Ratregion
5067892AU047473254176894251768942771Ratregion
5068324AU047214148175373503953735187Ratregion
5068744AU046959107177946832079468427Ratregion
5068832AU046899269176157905261579322Ratregion
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5069444AU046494216175473390254734105Ratregion
5069730AU046308122176272080462720926Ratregion
5069846AU046913256178246816182468417Ratregion
5070432AU022916111177958554879585659Ratregion
5061874AW533955180176598174665981926Ratregion
5061922BI294222117177284133972841456Ratregion
5062088BI294994156177325987373260029Ratregion
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5064322BE114408171175497844954978620Ratregion
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5065822BE109990175177790815777908332Ratregion
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5065730BE109742154177716564377165797Ratregion
5062532BI288939132177348490373485035Ratregion
5064330BE114414191176841351868413709Ratregion
5064402BI302100160176619636666196526Ratregion
5063064BI28925597178141995481420051Ratregion
5061460BE105222189177717230277172491Ratregion
5061476BE111848159175731299857313157Ratregion
5084388AI233834243177611958976119832Ratregion
5086995BE106817172176658207166582243Ratregion
5086062AW529448166177757967277579838Ratregion
5086240BM386226187177606710776067294Ratregion
5086327BM386345154175505407455054228Ratregion
5087070BM387785215177322902673229241Ratregion
5082465BE119488188175497620654976394Ratregion
5082573BE119757166177951256879512734Ratregion
5086555BE114437173176908521669085389Ratregion
5086558BM385825155177258539972585554Ratregion
5087283AW531528186175817987458180060Ratregion
5082683BF416571213176182705361827266Ratregion
5082877BF390310209177170388471704093Ratregion
5089153AU048986107177474167774741716Ratregion
5089939AU049454268176099615560996421Ratregion
5089965AU049469201177924858379248784Ratregion
5083071BF390754200177151223771512437Ratregion
5089281AU049062188175979416959794357Ratregion
5083459BE100107199178011388280114081Ratregion
5090669AU049890291176437563064375921Ratregion
5083759AI412881204178062382780624031Ratregion
5088605AU048669185176743504567435230Ratregion
5088635AU048686263177889246078892723Ratregion
5089685AU049302280176140062661400896Ratregion
5083998AA894002207177328808573288292Ratregion
5081593BF420658123175359258753593619Ratregion
5084618AI41058294177791244877912542Ratregion
5084406AI40898296176167090961671005Ratregion
5084862AI008532182177151375871513940Ratregion
5084866AI17222297178134119381341290Ratregion
5080998RH141904210176639017766390387Ratregion
5085671AW535579181176863918268639363Ratregion
5090103AU049552248175876877858769026Ratregion
5081382AI385205182176695243966953772Ratregion
5084484AI013758154176793430967934463Ratregion
5082875BF390305174178107653981076713Ratregion
5086106AI233437160176822796468228124Ratregion
5086203BE111954215177480204074802255Ratregion
5086315BM387042810177658301876583828Ratregion
5081230RH142039166175731804557318211Ratregion
5083087BF390786156177242944372429599Ratregion
5083187BF390950154177368501073685164Ratregion
5083227BI275488109175427568654275795Ratregion
5086592BE114499170177333435673334526Ratregion
5086634BQ205792172176455217764552349Ratregion
5081727AI577465102178149674081496842Ratregion
5081811BE118396161178149947581499636Ratregion
5085713AA849380155176118296261183117Ratregion
5083767AI598891105175416915254169257Ratregion
5083936AA893268250177709116377091413Ratregion
5503076Actn2121175817097158172160Ratregion
5503174ksks283325177476681774767142Ratregion
5507549G06312245176063161260631858Ratregion
5503821MARC_33810-33811:1053549243:1283175451715454517437Ratregion
5503716SEPHS1_9288834177335712773357961Ratregion
5507699GDB:131819860175428260354282663Ratregion
5507709UniSTS:25682101176063174660631847Ratregion
5504718PMC84149P1396175439776454398162Ratregion
5504308D10S1340E111176063174660631857Ratregion
5504338D11S3020208177399021473990422Ratregion
5504887ha30461560175742191857423478Ratregion
5504999Fzd8155175731681457316969Ratregion
5504472PMC21940P1246175897512058975366Ratregion
5504805Hrmt1l2212176762614767626358Ratregion
5505774UniSTS:4930721679176674681366748492Ratregion
5506334MARC_50801-50802:1130354928:1218177550049775500715Ratregion
5506833G46301184176368764763687831Ratregion
5507041fb22g09.x1919176685866666859585Ratregion
5507129UniSTS:224716174175430307754303251Ratregion
5507271fc41h02.x1817175992373059924675Ratregion
5507287fb54b04.x10176000564260006974Ratregion
5507287fb54b04.x10176000564260006996Ratregion
5500951MARC_9759-9760:996688576:1309175490413854904449Ratregion
5502080MARC_31619-31620:1062167711:1572177667459876675170Ratregion
5500741G26357217176062989760630114Ratregion
5500793stSG625620867175930361859304485Ratregion
5500360GDB:315925159178122333381224185Ratregion
5500725RH69943185178173980481739989Ratregion
5503394VIM208177667281476673022Ratregion
5501365G15938233177790774577907978Ratregion
5501436Snrpn358175637213156372489Ratregion
5501568RH3672477177335720673357283Ratregion
5505530A005N471694175787883057880524Ratregion
5502120MARC_5003-5004:996690032:1176176844133968442557Ratregion
5502385RH124704380177638514376385523Ratregion
5506907G47699239176249047262490711Ratregion
5502529RH125200125176454212064542245Ratregion
11528632rs198863294177821235678212356Ratregion
11528635rs1978618040177860378878603788Ratregion
11528634rs197277061177783006477830064Ratregion
12903254rs19919411186177272433972724339Ratregion
12903258rs105876746113177952418879524188Ratregion
152023625rs1072979910175706780557067805Ratregion
152025237rs1057390160175992909559929095Ratregion
Position Markers

Flank 1: (D17Rat79)
Rat AssemblyChrPosition (strand)Source
GRCr81758,194,064 - 58,194,278 (+)Marker Load Pipeline
mRatBN7.21753,498,828 - 53,499,042 (+)MAPPER
Rnor_6.01756,224,296 - 56,224,509NCBI
Rnor_5.01754,261,257 - 54,261,470UniSTS
RGSC_v3.41762,026,925 - 62,027,296RGD
RGSC_v3.41762,027,022 - 62,027,235UniSTS
RGSC_v3.11762,037,855 - 62,038,068RGD
Celera1749,492,241 - 49,492,454UniSTS
RH 3.4 Map17539.3UniSTS
RH 3.4 Map17539.3RGD
SHRSP x BN Map1731.5399UniSTS
SHRSP x BN Map1731.5399RGD
FHH x ACI Map1739.9599RGD
Peak: (D17Mit4)
Rat AssemblyChrPosition (strand)Source
GRCr81765,154,784 - 65,155,015 (+)Marker Load Pipeline
mRatBN7.21760,463,412 - 60,463,643 (-)MAPPER
Rnor_6.01763,994,205 - 63,994,435NCBI
Rnor_5.01765,757,271 - 65,757,501UniSTS
RGSC_v3.41771,214,626 - 71,214,857RGD
RGSC_v3.41771,214,627 - 71,214,857UniSTS
RGSC_v3.11771,225,459 - 71,225,690RGD
Celera1760,112,962 - 60,113,192UniSTS
RH 3.4 Map17559.3UniSTS
RH 3.4 Map17559.3RGD
RH 2.0 Map17498.3RGD
Cytogenetic Map17q12.1UniSTS
Flank 2: (D17Rat65)
Rat AssemblyChrPosition (strand)Source
GRCr81787,387,778 - 87,388,164 (+)Marker Load Pipeline
mRatBN7.21782,479,461 - 82,479,847 (+)MAPPER
Rnor_6.01786,730,695 - 86,731,080NCBI
Rnor_5.01788,435,111 - 88,435,496UniSTS
RGSC_v3.41793,929,621 - 93,930,006UniSTS
RGSC_v3.11793,940,453 - 93,940,839RGD
Celera1781,749,932 - 81,750,317UniSTS
RH 3.4 Map17835.8RGD
RH 3.4 Map17835.8UniSTS
RH 2.0 Map17694.9RGD
SHRSP x BN Map1747.5399RGD
FHH x ACI Map1765.42RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
11528636Bss120Bone structure and strength QTL 1208.553e-09femur morphology trait (VT:0000559)femoral neck width (CMO:0001695)177783006478603788Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)175724672370852846Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)175402992960463637Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176364000973951021Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)175900564977910000Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)177100332581153923Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
1581509Cm57Cardiac mass QTL 574.50.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)178115392381208154Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)177177462182479847Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)175639647763640182Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Bvd4

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcrosstoH-Tx/Hcj  
qtl_gene Homology mapping to human shows that three potential candidate genes for this QTL in human are FZD8 (frizzled 8 precursor), MTR (5-methyltetrahydrofolate-homocysteine methyltransferase; methionine synthase, vitamin B12 dependent), and CHRM3 (muscarinic acetylcholine receptor M3). 1302890
qtl_general Majority of animals with hydrocephalus were homozygous genotype. 1302890
qtl_statistics_details Peak LOD score is less than 1 cM from D17mit4 marker. Confidence interval for this QTL is 19.2 cM. 1302890