Scl26 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl26 (Serum cholesterol level QTL 26) Rattus norvegicus

Symbol: Scl26
Name: Serum cholesterol level QTL 26
RGD ID: 1331773
Previously known as: BW_TOTAL_CHOLESTEROL_VALUE
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 3.065
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8548,523,123 - 91,770,353RGD_MAPPER_PIPELINE
mRatBN7.2543,726,656 - 86,724,018RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0544,404,276 - 89,432,042RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0549,028,773 - 93,491,357RGDRnor5.0
RGSC_v3.4545,499,364 - 90,620,456RGDRGSC3.4
RGSC_v3.1545,499,544 - 90,625,569RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/SsNHsd  (IEA)
SS/JrHsdMcwi  (IEA)

References

References - curated
# Reference Title Reference Citation
1. A genomic-systems biology map for cardiovascular function. Stoll M, etal., Science 2001 Nov 23;294(5547):1723-6.
Related QTLs

Related QTL Description Reference
Rf36 maps to same region RGD:70849
Rf34 maps to same region RGD:70849
Rf33 maps to same region RGD:70849
Rf35 maps to same region RGD:70849
Rf32 maps to same region RGD:70849


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41151486LOC120103355U2 spliceosomal RNA54409051344090680Rat
41394701LOC120102847uncharacterized LOC12010284754485879044922780Rat
1309438Map3k7mitogen activated protein kinase kinase kinase 754635697346415597Rat
41352216LOC120102849uncharacterized LOC12010284954659689946619460Rat
1562865Bach2BTB domain and CNC homolog 254663233846982676Rat
41044339LOC120102851uncharacterized LOC12010285154699298847009537Rat
9283972LOC103692326uncharacterized LOC10369232654599237845995040Rat
41149442LOC120102848uncharacterized LOC12010284854604083146066269Rat
11388087LOC108350944uncharacterized LOC10835094454631252546332473Rat
41237335LOC120103146uncharacterized LOC12010314654643085646432860Rat
1309630Gja10gap junction protein, alpha 1054699105147002902Rat
1305771Casp8ap2caspase 8 associated protein 254701450147052276Rat
1306394Mdn1midasin AAA ATPase 154705543547190426Rat
1583731Ankrd6ankyrin repeat domain 654719798147343183Rat
1597334Lyrm2LYR motif containing 254719819247200470Rat
9434881Ggact-ps3gamma-glutamylamine cyclotransferase, pseudogene 354734324847355132Rat
1310007RragdRas-related GTP binding D54737390247409369Rat
1305067Ube2j1ubiquitin-conjugating enzyme E2, J154742247647441476Rat
7504318Rpp38-ps1ribonuclease P/MRP subunit p38, pseudogene 154744411947445294Rat
61902Gabrr2gamma-aminobutyric acid type A receptor subunit rho 254744528047489929Rat
41016461LOC120102852uncharacterized LOC12010285254746852847472049Rat
61900Gabrr1gamma-aminobutyric acid type A receptor subunit rho 154752415147561228Rat
1307853Pm20d2peptidase M20 domain containing 254756605947586334Rat
1561162Srsf12serine and arginine rich splicing factor 1254760652647631509Rat
628753Pnrc1proline-rich nuclear receptor coactivator 154764707047657832Rat
1311410RngttRNA guanylyltransferase and 5'-phosphatase54770692947913297Rat
1586082Bnip2-ps1BCL2 interacting protein 2, pseudogene 154827942748281466Rat
2369Cnr1cannabinoid receptor 154840854348436099Rat
1560284Spaca1sperm acrosome associated 154852540648540676Rat
1594697Set-ps17Set nuclear proto-oncogene, pseudogene 1754889456548895728Rat
6499463Rps27a-ps32ribosomal protein S27a, pseudogene 3254891664348917100Rat
1594682Csgalnact2-ps1chondroitin sulfate N-acetylgalactosaminyltransferase 2, pseudogene 154892507248927897Rat
11505979LOC108350952uncharacterized LOC10835095254906238049063472Rat
40976841Trnav-aac27transfer RNA valine (anticodon AAC) 2754908089349080965Rat
40933816Trnav-aactransfer RNA valine (anticodon AAC)54908089349080965Rat
1307791Akirin2akirin 254910823149122566Rat
1308457Orc3origin recognition complex, subunit 354912375849181552Rat
1305419Rars2arginyl-tRNA synthetase 2, mitochondrial54918151749238664Rat
1311359Slc35a1solute carrier family 35 member A154922559949248382Rat
1310641Cfap206cilia and flagella associated protein 20654925439949299145Rat
1563056C5h6orf163similar to human chromosome 6 open reading frame 16354931678449329164Rat
1305158Smim8small integral membrane protein 854933661749345625Rat
41271580LOC120103296small nucleolar RNA SNORA1754935856049358689Rat
61931Zfp292zinc finger protein 29254938417749468177Rat
11452394LOC108350953small ubiquitin-related modifier 2 pseudogene54948279049483777Rat
620436Cgaglycoprotein hormones, alpha polypeptide54948691549499192Rat
1586081Rpl23a-ps17ribosomal protein L23a, pseudogene 1754950771649508319Rat
1560696Mob3bMOB kinase activator 3B54954625449737934Rat
7657583LOC102549876uncharacterized LOC10254987654958355049587920Rat
1584099Luc7l3-ps2LUC7-like 3 pre-mRNA splicing factor, pseudogene 254965348749655419Rat
1309045Ifnkinterferon kappa54973207349734281Rat
1359108RGD1359108similar to RIKEN cDNA 3110043O2154976634049791434Rat
1310773Lingo2leucine rich repeat and Ig domain containing 255037074451687252Rat
41316018LOC120103215U6 spliceosomal RNA55046074850460853Rat
2325412Mir876microRNA 87655133719151337269Rat
1592194Hnrnpk-ps6heterogeneous nuclear ribonucleoprotein K, pseudogene 655181298851817585Rat
2322670Rbsn5l-ps1rabenosyn-5 like, pseudogene 155279522552797778Rat
1586080Ldha-ps4lactate dehydrogenase A, pseudogene 455313501053136103Rat
1591027Hspa8-ps13heat shock protein family A (Hsp70) member 8, pseudogene 1355316325753165307Rat
11457499Hnrnpa1-ps31heterogeneous nuclear ribonucleoprotein A1, pseudogene 3155365434253655308Rat
13061951700009N14RiklRIKEN cDNA 1700009N14 gene like55445600554457381Rat
41257904Rnu6-48RNA, U6 small nuclear 4855460119254601298Rat
41330287Rnu7-97RNA, U7 small nuclear 9755508991255089976Rat
2019Aco1aconitase 155525984155315872Rat
1309460Rig1RNA sensor RIG-155532135155369947Rat
1305270ToporsTOP1 binding arginine/serine rich protein, E3 ubiquitin ligase55538803355399937Rat
7573721Smim27small integral membrane protein 2755539963755400304Rat
1311354Ndufb6NADH:ubiquinone oxidoreductase subunit B655540054355410110Rat
1590957Ptma-ps2prothymosin alpha, pseudogene 255545244255453652Rat
2301013Sec61g-ps8Sec61 translocon subunit gamma, pseudogene 855558521355585625Rat
1589861Tmem215transmembrane protein 21555561256855615828Rat
1589840Rpl24-ps4ribosomal protein L24, pseudogene 455578299955783468Rat
628740Aptxaprataxin55579889655822963Rat
620942Dnaja1DnaJ heat shock protein family (Hsp40) member A155584241455853326Rat
2325370Mir207microRNA 20755584280655842883Rat
620694Smu1SMU1, DNA replication regulator and spliceosomal factor55585669155875262Rat
620900B4galt1beta-1,4-galactosyltransferase 155593561455982461Rat
1303188Spink4serine peptidase inhibitor, Kazal type 455604393656064841Rat
1305203Bag1BAG cochaperone 155606849456081075Rat
1305968Chmp5charged multivesicular body protein 555608138556098529Rat
1310277Nfx1nuclear transcription factor, X-box binding 155610494556162912Rat
2145Aqp7aquaporin 755617164956186642Rat
40940830LOC120103220U6 spliceosomal RNA55618933456189452Rat
68428Aqp3aquaporin 3 (Gill blood group)55623920056244718Rat
1308033Nol6nucleolar protein 655625991956270540Rat
1594826Ube2r2ubiquitin-conjugating enzyme E2R 255628660456345160Rat
41327246LOC120103060uncharacterized LOC12010306055628697356300346Rat
1311717Ubap2ubiquitin-associated protein 255634824356437403Rat
11389431LOC108350947uncharacterized LOC10835094754741423947422384Rat
7651324LOC102555980uncharacterized LOC10255598054749277147502403Rat
41069886LOC120103194U6 spliceosomal RNA54755397647554081Rat
11360528LOC108350948uncharacterized LOC10835094854769506447706817Rat
9435428LOC103692329eukaryotic initiation factor 4A-I pseudogene54775341147754665Rat
11398296LOC108350949uncharacterized LOC10835094954783364147845926Rat
11439912LOC108350950uncharacterized LOC10835095054827279048371017Rat
41248460LOC120102853uncharacterized LOC12010285354837353548403687Rat
41192036LOC120103344U2 spliceosomal RNA54842749848427636Rat
9082336LOC103692331uncharacterized LOC10369233154845049948520234Rat
41313046LOC120103226U6 spliceosomal RNA54858804548588141Rat
11436894LOC108350951uncharacterized LOC10835095154906192649094913Rat
41078263LOC120103367small nucleolar RNA U354937190549372024Rat
41270715Ubr7-ps1ubiquitin protein ligase E3 component n-recognin 7, pseudogene 154951026449512757Rat
7641478Rpl10a-ps2ribosomal protein L10A, pseudogene 254973891149739989Rat
41194781LOC120103371U4 spliceosomal RNA54974815649748295Rat
41389895Tuba1a-ps5tubulin, alpha 1A, pseudogene 555290789152911653Rat
41373051LOC120102855uncharacterized LOC12010285555536968155370818Rat
41185977LOC120102856uncharacterized LOC12010285655551486355520852Rat
41246143LOC120103221U6 spliceosomal RNA55554495855545064Rat
2325356Mir873microRNA 87355135691951356995Rat
41194899LOC120103068SUMO-conjugating enzyme UBC9-like55567970855692106Rat
41162930Snord121bsmall nucleolar RNA, C/D box 121B55635624356356319Rat
41193020Snord121asmall nucleolar RNA, C/D box 121A55636700956367089Rat
41227498LOC120103358small nucleolar RNA SNORD121A55636927856369356Rat
1596535Rps13l1ribosomal protein S13 like 155645712156457669Rat
1594034Dcaf12DDB1 and CUL4 associated factor 1255646041856482171Rat
40965561LOC120103061uncharacterized LOC12010306155648534456491627Rat
1305186Ubap1ubiquitin-associated protein 155652072256561153Rat
1307723Kif24kinesin family member 2455656101956628040Rat
1303023Nudt2nudix hydrolase 255662826556643104Rat
1309821Myorgmyogenesis regulating glycosidase55665425756664467Rat
1561916Spmip6sperm microtubule inner protein 655666616056678865Rat
1588668Fam219afamily with sequence similarity 219, member A55667927256729959Rat
1565671Dnai1dynein, axonemal, intermediate chain 155673017956800926Rat
6487582Enhoenergy homeostasis associated55680098056802777Rat
1303100Cntfrciliary neurotrophic factor receptor55682344856861049Rat
1306576Rpp25lribonuclease P/MRP subunit p25 like55687842056879956Rat
1309547Dctn3dynactin subunit 355688108556889041Rat
1560943Arid3cAT-rich interaction domain 3C55688964956896959Rat
68364Sigmar1sigma non-opioid intracellular receptor 155690415556907012Rat
1306483Galtgalactose-1-phosphate uridylyltransferase55692703956930284Rat
621332Il11ra1interleukin 11 receptor subunit alpha 155693182456941408Rat
1304660Ccl27C-C motif chemokine ligand 2755694140256948511Rat
1310336Ccl19C-C motif chemokine ligand 1955696336456965308Rat
1592281Rps12l7ribosomal protein S12-like 755696719256987008Rat
1311996Ccl21C-C motif chemokine ligand 2155698055756981661Rat
2320471Spata31f1SPATA31 subfamily F member 155706574357071880Rat
1561387Spata31f3SPATA31 subfamily F member 355708730557093191Rat
1559864Phf24PHD finger protein 2455714342857171054Rat
1307453Dnajb5DnaJ heat shock protein family (Hsp40) member B555717684057186067Rat
2321337Spata31g1SPATA31 subfamily G member 155719998057204069Rat
621595Vcpvalosin-containing protein55721016757229571Rat
1587477FancgFA complementation group G55723028757240067Rat
1309498Pigophosphatidylinositol glycan anchor biosynthesis, class O55724472157256252Rat
1308285Stoml2stomatin like 255725622757259824Rat
1311249Atosbatos homolog B55726083957274524Rat
619723Unc13bunc-13 homolog B55728899957504110Rat
7551556LOC102553821uncharacterized LOC10255382155667907056684701Rat
7670634LOC102547621uncharacterized LOC10254762155695297756960366Rat
41092501Rpl39-ps2ribosomal protein L39, pseudogene 255731859057318749Rat
41007842LOC120103346small nucleolar RNA SNORA1755737819257378303Rat
1587460Atp8b5ATPase, class I, type 8B, member 555750589757620065Rat
9297465Tmsb4xl2thymosin beta 4, X-linked like 255731945957319811Rat
41164079LOC120102860uncharacterized LOC12010286055753872457568537Rat
1592688Rusc2RUN and SH3 domain containing 255762839757675524Rat
2318060Cimip2bciliary microtubule inner protein 2B55767553757680133Rat
62059Tesk1testis associated actin remodelling kinase 155769192257697698Rat
1309757Cd72Cd72 molecule55769736157704980Rat
1559919Sit1signaling threshold regulating transmembrane adaptor 155774021257741838Rat
1560252Ccdc107coiled-coil domain containing 10755774950257752920Rat
1310376Arhgef39Rho guanine nucleotide exchange factor 3955775250957756079Rat
1306426Car9carbonic anhydrase 955776323457769838Rat
1559479Tpm2tropomyosin 255777091957780278Rat
1306247Tln1talin 155778767057817900Rat
1308831Creb3cAMP responsive element binding protein 355781786557823233Rat
1305598Gba2glucosylceramidase beta 255782238957834522Rat
1311757Rgp1RGP1 homolog, RAB6A GEF complex partner 155783446757843087Rat
2323536Msmpmicroseminoprotein, prostate associated55783893557839985Rat
1562259Rps20l1ribosomal protein S20 like 155786762857868149Rat
620851Npr2natriuretic peptide receptor 255788317157901590Rat
1307079Spag8sperm associated antigen 855790168157903894Rat
1308910Hint2histidine triad nucleotide binding protein 255790461357906868Rat
1310425Fam221bfamily with sequence similarity 221, member B55791034657919562Rat
1310012Tmem8btransmembrane protein 8B55791947357948419Rat
1332684Or13e8olfactory receptor family 13 subfamily E member 855795197157952921Rat
1333724Or13j1olfactory receptor family 13 subfamily J member 155796139157962329Rat
2323278Hrct1histidine rich carboxyl terminus 155798234457983186Rat
41352849LOC120103380U6 spliceosomal RNA55798503557985141Rat
1333470Or13d31-ps1olfactory receptor family 13 subfamily D member 31, pseudogene 155801380858014421Rat
1332606Or13c7dolfactory receptor family 13 subfamily C member 7D55801960658020565Rat
1334264Or13c7eolfactory receptor family 13 subfamily C member 7E55803253558033482Rat
1334076Or13c7bolfactory receptor family 13 subfamily C member 7B55804633058047286Rat
1332747Or13c7colfactory receptor family 13 subfamily C member 7C55806707858068034Rat
1333374Or13c7olfactory receptor family 13 subfamily C member 755808115058082109Rat
1308845Reckreversion-inducing-cysteine-rich protein with kazal motifs55810296158169516Rat
1583669Glipr2GLI pathogenesis-related 255817041758202258Rat
1359369Ccincalicin55820667658208563Rat
70919Cltaclathrin, light chain A55824425358263480Rat
69239Gneglucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase55826718958307396Rat
621856Rnf38ring finger protein 3855835877158467424Rat
1308974Melkmaternal embryonic leucine zipper kinase55854039358600562Rat
2323128LOC100359916heterogeneous nuclear ribonucleoprotein K-like55866832658670222Rat
1565236Pax5paired box 555876333458945719Rat
41144673LOC120102862uncharacterized LOC12010286255889677158899409Rat
1310467Zcchc7zinc finger CCHC-type containing 755899255859173308Rat
1308851Grhprglyoxylate and hydroxypyruvate reductase55923417959243614Rat
1307367Zbtb5zinc finger and BTB domain containing 555924413259265461Rat
1565773Polr1eRNA polymerase I subunit E55927945659295346Rat
1305465Fbxo10F-box protein 1055929701659343429Rat
1596808Tomm5translocase of outer mitochondrial membrane 555936236059365191Rat
1305229Frmpd1FERM and PDZ domain containing 155944307659545125Rat
1310735Trmt10btRNA methyltransferase 10B55954884559572529Rat
1304739Exosc3exosome component 355957384959579065Rat
1586079Dcaf10lDDB1 and CUL4 associated factor 10 like55960217759607812Rat
1304730Dcaf10DDB1 and CUL4 associated factor 1055960779559647209Rat
1305190Slc25a51solute carrier family 25, member 5155964998059663454Rat
1565350ShbSH2 domain containing adaptor protein B55967806659785443Rat
1306737Aldh1b1aldehyde dehydrogenase 1 family, member B156006337060068378Rat
1305656Igfbpl1insulin-like growth factor binding protein-like 156007642860091833Rat
1305807Stra6lSTRA6-like56010694960147546Rat
6498132Ccdc180coiled-coil domain containing 18056015488360223508Rat
41363728LOC120102865uncharacterized LOC12010286556021582360222294Rat
619724Tdrd7tudor domain containing 756023874260312548Rat
41356641LOC120102866uncharacterized LOC12010286656025729860267598Rat
3874Tmod1tropomodulin 156031644560393957Rat
1310893Tstd2thiosulfate sulfurtransferase like domain containing 256037175160415916Rat
1308973Ncbp1nuclear cap binding protein subunit 156041602360449004Rat
1308769XpaXPA, DNA damage recognition and repair factor56043167360475726Rat
1584846Sord-ps4sorbitol dehydrogenase, pseudogene 456054795960551393Rat
621723Foxe1forkhead box E156063002760632835Rat
1305420TrmotRNA methyltransferase O56066310660676423Rat
621569Hemgnhemogen56067963360698597Rat
41030381LOC120102868uncharacterized LOC12010286856069396560699404Rat
621285Anp32bacidic nuclear phosphoprotein 32 family member B56074307760765726Rat
1311943NansN-acetylneuraminate synthase56078044160797583Rat
1311514Trim14tripartite motif-containing 1456080056860824858Rat
1309719Coro2acoronin 2A56082563060881917Rat
1306860Tbc1d2TBC1 domain family, member 256088411460931717Rat
619864Gabbr2gamma-aminobutyric acid type B receptor subunit 256094751761288104Rat
3334Anks6ankyrin repeat and sterile alpha motif domain containing 656130918361350596Rat
2320512Dppa3-ps4developmental pluripotency-associated 3, pseudogene 456136001661360478Rat
1562001Galnt12polypeptide N-acetylgalactosaminyltransferase 1256138457561413346Rat
1310820Col15a1collagen type XV alpha 1 chain56150196361607591Rat
41122460LOC120102870uncharacterized LOC12010287056155012661567214Rat
3852Tgfbr1transforming growth factor, beta receptor 156165377361710777Rat
1309940Alg2ALG2, alpha-1,3/1,6-mannosyltransferase56176873861773297Rat
1304997Sec61bSEC61 translocon subunit beta56177359461781804Rat
40932422LOC120102872uncharacterized LOC12010287256195026661963787Rat
41344927Psmb3-ps3proteasome 20S subunit beta 3, pseudogene 356213299462133594Rat
41286228LOC120102873uncharacterized LOC12010287356219883162234609Rat
61882Nr4a3nuclear receptor subfamily 4, group A, member 356236158862401489Rat
708499Stx17syntaxin 1756244613862506108Rat
7516529Exosc8-ps1exosome component 8, pseudogene 156249637662498494Rat
1309176Erp44endoplasmic reticulum protein 4456251655062610762Rat
1563359Invsinversin56261091662763813Rat
1312045Tex10testis expressed 1056276223062808373Rat
1308165Msantd3Myb/SANT DNA binding domain containing 356286602262892444Rat
62005Tmeff1transmembrane protein with EGF-like and two follistatin-like domains 156291074062996494Rat
1310395Cavin4caveolae associated protein 456299690663007677Rat
1303116Plppr1phospholipid phosphatase related 156343745763725286Rat
41002171Trnaa-agc32transfer RNA alanine (anticodon AGC) 3256368361763683691Rat
41367081LOC120103256small nucleolar RNA SNORD113/SNORD114 family56369844663698522Rat
1585791Cnppd1-ps1cyclin Pas1/PHO80 domain containing 1, pseudogene 156372743963729005Rat
1359532Acnat2acyl-coenzyme A amino acid N-acyltransferase 256375326963757521Rat
1584701Acnat1acyl-coenzyme A amino acid N-acyltransferase 156379665163801601Rat
2190Baatbile acid CoA:amino acid N-acyltransferase56385166863860641Rat
1308008Mrpl50mitochondrial ribosomal protein L5056386743763872591Rat
1306510Zfp189zinc finger protein 18956387259663884348Rat
2090Aldobaldolase, fructose-bisphosphate B56388904563902086Rat
1307218Pgap4post-GPI attachment to proteins GalNAc transferase 456393191663947004Rat
1311936Rnf20ring finger protein 2056397606364001754Rat
621704Grin3aglutamate ionotropic receptor NMDA type subunit 3A56400684764206408Rat
69232Ppp3r2protein phosphatase 3, regulatory subunit B, beta56402690364027898Rat
41052311Eif2s1-ps1eukaryotic translation initiation factor 2 subunit alpha, pseudogene 156403946064051932Rat
1584718Acnat2-ps1acyl-coenzyme A amino acid N-acyltransferase 2, pseudogene56376466663786264Rat
41374908Spaarsmall regulatory polypeptide of amino acid response55798542357987482Rat
41340812LOC120103315small nucleolar RNA SNORA1755864448858644614Rat
41206741LOC120102863uncharacterized LOC12010286355921362759226603Rat
9330186LOC10369234660S ribosomal protein L24 pseudogene55937347759374019Rat
41380328LOC120103148uncharacterized LOC12010314855939229559395154Rat
41200968LOC120102864uncharacterized LOC12010286455947188159475003Rat
9455316Pgam1-ps8phosphoglycerate mutase 1, pseudogene 855959321759593995Rat
9246609LOC103692348uncharacterized LOC10369234855991124059915448Rat
6497914Pfdn6-ps1prefoldin subunit 6, pseudogene 156071755360717974Rat
11466141LOC108350963uncharacterized LOC10835096356086071560864473Rat
11357613LOC108350962uncharacterized LOC10835096256088192860890626Rat
41122038LOC120102869uncharacterized LOC12010286956090395160904907Rat
7721743LOC102551073uncharacterized LOC10255107356148938761502617Rat
41084988LOC120102871uncharacterized LOC12010287156172824561741721Rat
40992078LOC120102874uncharacterized LOC12010287456223105162234747Rat
41124713LOC120103308small nucleolar RNA SNORA1756223163762231768Rat
7706450LOC102551711uncharacterized LOC10255171156269760362753262Rat
11499882LOC108350968uncharacterized LOC10835096856288035062910661Rat
41217704LOC120103339small nucleolar RNA SNORA1756324864463248766Rat
41303713LOC120103338small nucleolar RNA SNORA1756469761764697721Rat
1562799Cylc2cylicin 256555432065576251Rat
1598042Gemin8-ps9gem (nuclear organelle) associated protein 8, pseudogene 956573527265735956Rat
1597991Sod2-ps1superoxide dismutase 2, pseudogene 156625852666259065Rat
1586077Btbd10-ps2BTB domain containing 10, pseudogene 256651324066514662Rat
2324538Ola1-ps1Obg-like ATPase 1, pseudogene 156660184566602611Rat
1587377Hspa8-ps27heat shock protein family A (Hsp70) member 8, pseudogene 2756660632766608257Rat
1594316Rps6-ps10ribosomal protein S6, pseudogene 1056668085366681691Rat
1305227Smc2structural maintenance of chromosomes 256680688266853478Rat
40926645LOC120103314small nucleolar RNA SNORA1756688363866883766Rat
1309291Toporsltopoisomerase I binding, arginine/serine-rich like56699808367000642Rat
1332764Or13f5l1olfactory receptor family 13 subfamily F member 5 like 156722777467228733Rat
1583730Or13f5olfactory receptor family 13 subfamily F member 556724174967242708Rat
1333279Or8i8-ps1olfactory receptor family 8 subfamily I member 8, pseudogene 156726430467264919Rat
1333321Or13c3colfactory receptor family 13 subfamily C member 3C56727844467279397Rat
1333133Or13c3eolfactory receptor family 13 subfamily C member 3E56730562067306573Rat
6487777Or13c3bolfactory receptor family 13 subfamily C member 3B56737248967373466Rat
1333384Or13c3folfactory receptor family 13 subfamily C member 3F56740215767403110Rat
1332933Or13c3golfactory receptor family 13 subfamily C member 3G56742361867424571Rat
1332612Or13c3olfactory receptor family 13 subfamily C member 356745575167456701Rat
1333398Or13c25olfactory receptor family 13 subfamily C member 2556751869167519650Rat
1333551Or13c9olfactory receptor family 13 subfamily C member 956755571867556668Rat
1334138Or13d1olfactory receptor family 13 subfamily D member 156758930667590244Rat
41377042LOC120103354U6atac minor spliceosomal RNA56760131267601439Rat
1583223Nipsnap3anipsnap homolog 3A (C. elegans)56761399367625067Rat
1359688Nipsnap3bnipsnap homolog 3B56763764467669698Rat
631344Abca1ATP binding cassette subfamily A member 156767826767801162Rat
41272998LOC120103341small nucleolar RNA SNORA1756602623666026348Rat
41329014LOC120103196U6 spliceosomal RNA56712440067124500Rat
41361886LOC120102877uncharacterized LOC12010287756719190567195516Rat
1597744Rps23-ps8ribosomal protein S23, pseudogene 856800625968006756Rat
621426Slc44a1solute carrier family 44 member 156806194168241912Rat
7555191LOC102551474uncharacterized LOC10255147456811484168145983Rat
1564809Fsd1lfibronectin type III and SPRY domain containing 1-like56825887768334931Rat
2322103Cbx3l2chromobox 3 like 256828055868281429Rat
1310087Fktnfukutin56833980368396412Rat
402194917Olr846-ps1olfactory receptor pseudogene 846, pseudogene 156733715267340910Rat
9340681LOC103692353uncharacterized LOC10369235356784980867858913Rat
41259190Rpl36a-ps12ribosomal protein L36A, pseudogene 1256795430567958398Rat
7499527LOC102551410uncharacterized LOC10255141056802042068030171Rat
41336381LOC120102879uncharacterized LOC12010287956802166368030631Rat
1596467Tal2TAL bHLH transcription factor 256841101268417569Rat
1305703Tmem38btransmembrane protein 38B56846030468496026Rat
7525226Plet1-ps1placenta expressed transcript 1, pseudogene 156847472768477394Rat
1564956Chp1l1calcineurin-like EF-hand protein 1 like 156857089468571875Rat
1595137Hint1l1histidine triad nucleotide binding protein 1 like 156863483968635405Rat
41248950LOC120103343small nucleolar RNA SNORA1756865391268654044Rat
2324157Rpl18-ps2ribosomal protein L18, pseudogene 256937553669376103Rat
41122531LOC120102880uncharacterized LOC12010288056949405369506142Rat
1594562Crat-ps1carnitine O-acetyltransferase, pseudogene 156952910069531269Rat
1562123Zfp462zinc finger protein 46256967008569810729Rat
2321090Gpx8-ps1glutathione peroxidase 8, pseudogene 156984410869844745Rat
1562958Rad23bRAD23 homolog B, nucleotide excision repair protein57009023270128340Rat
41038197LOC120103299small nucleolar RNA SNORA1757020966370209794Rat
621445Klf4KLF transcription factor 457027884370283751Rat
40962879LOC12010306940S ribosomal protein S18-like57028434770316393Rat
40960952LOC120102882uncharacterized LOC12010288257046003770477599Rat
41155819LOC120103062uncharacterized LOC12010306257103473071037178Rat
41028138LOC120103269small nucleolar RNA SNORA557113206671132150Rat
1584966Sec24c-ps1SEC24 homolog C, COPII coat complex component, pseudogene 157139498671407245Rat
1305655Actl7bactin-like 7b57144553271446920Rat
1304697Actl7aactin-like 7a57144744771450440Rat
620072Elp1elongator acetyltransferase complex subunit 157145333871505833Rat
1594560Abitramactin binding transcription modulator57150584871524224Rat
1311434Ctnnal1catenin alpha-like 157151434071569431Rat
2325586Mir32microRNA 3257159608371596152Rat
41386911LOC120103361U2 spliceosomal RNA57030731870307431Rat
41253762LOC120103313small nucleolar RNA SNORA1756854841868548540Rat
41212488LOC120103151uncharacterized LOC12010315156914468869153641Rat
41215818LOC120103303small nucleolar RNA SNORA1756943219369432324Rat
40933017LOC120103152cytochrome c oxidase subunit 6B1-like56964624769646803Rat
40972487Trnal-aag10transfer RNA leucine (anticodon AAG) 1056986995869870038Rat
41309963LOC120103301small nucleolar RNA SNORA1757030955770309688Rat
7643335LOC102553326uncharacterized LOC10255332657084070370847771Rat
40929885Rpsa-ps3ribosomal protein SA, pseudogene 357112474671125687Rat
7589034LOC102553455uncharacterized LOC10255345557141076071414956Rat
1308958Tmem245transmembrane protein 24557157095271647915Rat
1309978Frrs1lferric-chelate reductase 1-like57165591171690132Rat
1562988Epb41l4berythrocyte membrane protein band 4.1 like 4B57169170671852583Rat
1311363Ptpn3protein tyrosine phosphatase, non-receptor type 357190852072027323Rat
11365609LOC108350978uncharacterized LOC10835097857195962271960619Rat
6497715LOC100910620uncharacterized LOC10091062057209458272101070Rat
41025292Smarce1-ps8SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 857218614672200555Rat
1305135Pakapparalemmin A kinase anchor protein57231364672450645Rat
1305135Pakapparalemmin A kinase anchor protein57253698672648524Rat
1589037C5h9orf152similar to human chromosome 9 open reading frame 15257266057372667941Rat
621157Txn1thioredoxin 157271233472724564Rat
1303121Txndc8thioredoxin domain containing 857274970872785858Rat
11464753LOC108351128uncharacterized LOC10835112857278598072792102Rat
1588987Svep1sushi, von Willebrand factor type A, EGF and pentraxin domain containing 157281120072988185Rat
3211Muskmuscle associated receptor tyrosine kinase57305842773169696Rat
7685874LOC102556038uncharacterized LOC10255603857205669372060103Rat
41205132LOC120102883uncharacterized LOC12010288357210115572115231Rat
40948141LOC120103234U6 spliceosomal RNA57250483872504938Rat
7523626LOC102556461uncharacterized LOC10255646157272487472742702Rat
7708637LOC102546532uncharacterized LOC10254653257281555872823891Rat
75506704930522L14RiklRIKEN cDNA 4930522L14 gene like57309120573091526Rat
620563Lpar1lysophosphatidic acid receptor 157322904773347874Rat
2323431Bex1-ps1brain expressed, X-linked 1, pseudogene 157350552773505906Rat
1332920Or2k2olfactory receptor family 2 subfamily K member 257358268673583627Rat
1306148EcpasEcm29 proteasome adaptor and scaffold57360174573714026Rat
1586696Hspd1-ps10heat shock protein family D (Hsp60) member 1, pseudogene 1057372826073730198Rat
1586075Cct6a-ps4chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 457373065473732638Rat
621195Ptgr1prostaglandin reductase 157378400073802624Rat
1561488Dnajc25DnaJ heat shock protein family (Hsp40) member C2557382556573847878Rat
621514Gng10G protein subunit gamma 1057385612473863017Rat
1586646Shoc1shortage in chiasmata 157386442373956487Rat
621870UgcgUDP-glucose ceramide glucosyltransferase57403297874065701Rat
7529433LOC102551074uncharacterized LOC10255107457407691374089728Rat
1306966Susd1sushi domain containing 157415765374281171Rat
621671Ptbp3polypyrimidine tract binding protein 357431336774399439Rat
2320086Hnrnpa1-ps39heterogeneous nuclear ribonucleoprotein A1, pseudogene 3957439202074393768Rat
1305387Hsdl2hydroxysteroid dehydrogenase like 257444393374479104Rat
1310951Kiaa1958KIAA1958 homolog57449176274637929Rat
1307983InipINTS3 and NABP interacting protein57464839274662628Rat
41190661Trnas-aga22transfer RNA serine (anticodon AGA) 2257467176274671843Rat
1311367Snx30sorting nexin family member 3057468390274813013Rat
1310485Slc46a2solute carrier family 46, member 257480022674808128Rat
708508Obp3alpha-2u globulin PGCL457484231674845858Rat
708501Mup4l4major urinary protein 4 like 457490946874912890Rat
41225436LOC120102889major urinary protein-like57491752475569763Rat
2323040Zfp37-ps1zinc finger protein 37, pseudogene 157493033574960075Rat
735211Mup4major urinary protein 457496114374964686Rat
7682781Zfp37-ps4zinc finger protein 37, pseudogene 457497845374985589Rat
1583727Mup18major urinary protein 1857498681374990071Rat
1588799Mup4-ps7major urinary protein 4, pseudogene 757505917075061471Rat
735107Mup5major urinary protein 557520132475204903Rat
41362570Zfp37-ps5zinc finger protein 37, pseudogene 557521304975221201Rat
1566134Mup4l1major urinary protein 4 like 157522134075224797Rat
6495515Zfp37-ps2zinc finger protein 37, pseudogene 257530189275311574Rat
1593272Mup4l3major urinary protein 4 like 357531171375316792Rat
40999109Mup4-ps4major urinary protein 4, pseudogene 457539412375397484Rat
41225041Mup4-ps2major urinary protein 4, pseudogene 257546285575472666Rat
41286760Mup4-ps5major urinary protein 4, pseudogene 557557956475581856Rat
620723Zfp37zinc finger protein 3757559873275638896Rat
410096513110040M04Rikl2RIKEN cDNA 3110040M04 gene like 257565420575664531Rat
1307963Slc31a2solute carrier family 31 member 257573800875748542Rat
1304816Fkbp15FKBP prolyl isomerase family member 1557575078675815038Rat
620059Slc31a1solute carrier family 31 member 157581474475844241Rat
1311342Cdc26cell division cycle 2657584485275859830Rat
1311303Prpf4pre-mRNA splicing tri-snRNP complex factor PRPF457585993475873924Rat
1564412Rnf183ring finger protein 18357587711175886253Rat
1309367Wdr31WD repeat domain 3157589707475917461Rat
708400BspryB-box and SPRY domain containing57592739775949585Rat
1585262Hdhd3haloacid dehalogenase-like hydrolase domain containing 357595130875954775Rat
2083Aladaminolevulinate dehydratase57596199375972334Rat
1359475Pole3DNA polymerase epsilon 3, accessory subunit57597394175977175Rat
6500827LOC10091001760S ribosomal protein L31-like57598578575986272Rat
3566Rgs3regulator of G-protein signaling 357602203876161895Rat
1561252Uchl3-ps2ubiquitin C-terminal hydrolase L3, pseudogene 257603749876038593Rat
41255465LOC120102895uncharacterized LOC12010289557616671976167330Rat
41334998Ndufa5-ps4NADH:ubiquinone oxidoreductase subunit A5, pseudogene 457365922373659587Rat
41404093LOC120103153uncharacterized LOC12010315357349116173494563Rat
41282557LOC120103300U2 spliceosomal RNA57384285573843025Rat
7540511LOC102550849uncharacterized LOC10255084957395654973963604Rat
41261574LOC120103353small nucleolar RNA SNORD7557448345274483511Rat
41108935LOC120103243U7 small nuclear RNA57448812374488181Rat
41076485LOC120102886uncharacterized LOC12010288657451184374515127Rat
41324317Trnaa-agc81transfer RNA alanine (anticodon AGC) 8157473727474737355Rat
41324074LOC120102896uncharacterized LOC12010289657618489376187189Rat
41369930Zfp37-ps6zinc finger protein 37, pseudogene 657486333974895596Rat
41225607Mup4-ps6major urinary protein 4, pseudogene 657501439375016663Rat
40994216Mup4-ps3major urinary protein 4, pseudogene 357542016175422438Rat
11403548Mup4-ps1major urinary protein 4, pseudogene 157546285575498898Rat
41209452Trnap-ggg4transfer RNA proline (anticodon GGG) 457558855575588628Rat
11514913LOC108350981uncharacterized LOC10835098157567230775691604Rat
7534874LOC102547534uncharacterized LOC10254753457591749175921199Rat
727958Zfp483zinc finger protein 48357376320173780511Rat
1563460C5h9orf43similar to human chromosome 9 open reading frame 4357597729676002179Rat
1310743Zfp618zinc finger protein 61857639851476564837Rat
2102Ambpalpha-1-microglobulin/bikunin precursor57656809476578416Rat
9267319Mup4-ps8major urinary protein 4, pseudogene 857514215675145524Rat
1308487Kif12kinesin family member 1257659620476603261Rat
735115Col27a1collagen type XXVII alpha 1 chain57664730276765989Rat
2325417Mir455microRNA 45557668931376689390Rat
67390Orm1orosomucoid 157676663776776149Rat
1308202AknaAT-hook transcription factor57677741576824380Rat
631330Whrnwhirlin57682830876911945Rat
7695413LOC102547858uncharacterized LOC10254785857680748576814704Rat
1310088Atp6v1g1ATPase H+ transporting V1 subunit G157696146276967642Rat
1304595Tmem268transmembrane protein 26857697482777001457Rat
1584073Tex48testis expressed 4857701716777033673Rat
41102148LOC120103204U6 spliceosomal RNA57704088277040985Rat
1586184Gapdh-ps110Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 11057709206177094437Rat
628735Tnfsf15TNF superfamily member 1557713488577156171Rat
11371333LOC108350984U6 snRNA-associated Sm-like protein LSm6 pseudogene57714581477155846Rat
1590403Tnfsf8TNF superfamily member 857725094277277364Rat
621057Tnctenascin C57737585177460712Rat
1593270tuba1c-ps3tubulin, alpha 1C, pseudogene 357767917177681447Rat
41206721LOC120103331small nucleolar RNA SNORA1757782081177820944Rat
40946078LOC120103154uncharacterized LOC12010315457816128078184113Rat
1560180Eno1-ps16enolase 1, pseudogene 1657823847878242959Rat
1307742Pappapappalysin57849766078735873Rat
2320342Astn2astrotactin 257875814279744021Rat
1305238Trim32tripartite motif-containing 3257900513979016615Rat
41199365Rnu6-1015RNA, U6 small nuclear 101557930709979307205Rat
41173321H2az2-ps2H2A.Z variant histone 2, pseudogene 257972162879721952Rat
3870Tlr4toll-like receptor 458014586780159501Rat
41095319LOC120103275small nucleolar RNA SNORA4458024866580248782Rat
1593269Rpl13-ps6ribosomal protein L13, pseudogene 658078316180783785Rat
1561195Rpl31-ps11ribosomal protein L31, pseudogene 1158108325981083651Rat
1597387Cyc1-ps1cytochrome c-1, pseudogene 158113645281138332Rat
2318318Tra2b-ps4transformer 2 beta, pseudogene 458161556381658762Rat
1583726Hspa8-ps11heat shock protein family A (Hsp70) member 8, pseudogene 1158201034882012966Rat
708519Brinp1BMP/retinoic acid inducible neural specific 158234850182550506Rat
40998207LOC120102898uncharacterized LOC12010289858261444582621071Rat
2318120Chac2-ps4ChaC glutathione specific gamma-glutamylcyclotransferase 2, pseudogene 458285086782862378Rat
708451Cdk5rap2CDK5 regulatory subunit associated protein 258379228283961129Rat
11400923LOC108351093H/ACA ribonucleoprotein complex subunit 3 pseudogene57693498976936468Rat
7697789LOC102553131uncharacterized LOC10255313157700793877011175Rat
9234855LOC103692377uncharacterized LOC10369237757750867977564182Rat
41251418LOC120103186U6 spliceosomal RNA58035941580359521Rat
11518618LOC108351129uncharacterized LOC10835112958218638382197382Rat
11361552LOC108350985uncharacterized LOC10835098558255050182595277Rat
41071177LOC120103201U6 spliceosomal RNA58269977582699881Rat
41330673LOC120102899uncharacterized LOC12010289958352735783609586Rat
41186256LOC120102900uncharacterized LOC12010290058396088483976651Rat
1308330Megf9multiple EGF-like-domains 958399356584105622Rat
9685074Mir3084cmicroRNA 3084c58417737584177443Rat
2324484Sppl3-ps1signal peptide peptidase like 3, pseudogene 158426997084278377Rat
1585621Rgccl1regulator of cell cycle like 158428089784281785Rat
413197023110040M04Rikl6RIKEN cDNA 3110040M04 gene like 658544663085448161Rat
412384113110040M04Rikl4RIKEN cDNA 3110040M04 gene like 458545995885461489Rat
11433168LOC108351130uncharacterized LOC10835113058546400885465546Rat
41193095LOC120103080uncharacterized LOC12010308058547212485473655Rat
1592335Smarca2-ps2SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, pseudogene 258551439885523157Rat
1309237Tle1TLE family member 1, transcriptional corepressor58585182785934806Rat
41325019LOC120103336small nucleolar RNA SNORA1758566586285665987Rat
9106595LOC103692379small ubiquitin-related modifier 3 pseudogene58527277285273104Rat
6491129Slc25a4-ps1solute carrier family 25 member 4, pseudogene 158540968985410315Rat
41169748LOC120103074uncharacterized LOC12010307458543843585440033Rat
11383413LOC108351095serine/arginine repetitive matrix protein 1-like58544262085444118Rat
409444813110040M04Rikl3RIKEN cDNA 3110040M04 gene like 358545186285453391Rat
41198326LOC120103077uncharacterized LOC12010307758545591285457437Rat
410207263110040M04Rikl5RIKEN cDNA 3110040M04 gene like 558546807885469609Rat
114872973110040M04Rikl1RIKEN cDNA 3110040M04 gene like 158547618585477725Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10931D5Wox1322657516579275166041Ratregion
33836D5Mit912156029343460293557Ratregion
33921D5Mit219456928513369285327Ratregion
33967D5Mit329658108229081082586Ratregion
33985D5Mit1113358361072983610862Ratregion
34047D5Mit113655596227855962414Ratregion
34057D5Mit1713557196353371963668Ratregion
34144D5Mgh1114457425132074251464Ratregion
34170D5Mgh2412657830912778309253Ratregion
34212D5Mgh517654372665643726832Ratregion
34216D5Mgh614056898430768984447Ratregion
34322D5Mgh1012955979339959793528Ratregion
34501D5Mgh2614255580560655805750Ratregion
33678D5Mit108655571562255715708Ratregion
36135D5Rat2017458463946784639641Ratregion
36177D5Rat913555882923658829371Ratregion
36279D5Rat415154786906247869213Ratregion
37440D5Rat8415256954029569540447Ratregion
36946D5Rat716155571562655715787Ratregion
37684D5Rat7620056558701265587212Ratregion
37992D5Rat10224055686914956869389Ratregion
36482D5Rat1215256785677667856928Ratregion
36558D5Rat1919158672382786724018Ratregion
36634D5Rat1714058145011481450254Ratregion
36689D5Rat1414157599664575996794Ratregion
36743D5Rat1115356281175862811911Ratregion
34837D5Rat5219054784548347845673Ratregion
34953D5Rat1515257710834477108498Ratregion
35042D5Rat817455866567858665852Ratregion
35076D5Rat614555045536850455513Ratregion
35144D5Rat1316357338076273380925Ratregion
35767D5Rat517654983094949831125Ratregion
35783D5Rat1014356151004461510180Ratregion
39644D5Rat14419657454650474546700Ratregion
39722D5Rat13421655032855150328767Ratregion
39738D5Rat18219057196353271963722Ratregion
40430D5Rat19418456222253762222721Ratregion
38546D5Rat6822458163002581630249Ratregion
38548D5Rat8224654404503444045280Ratregion
38700D5Rat8524358592266185922904Ratregion
38740D5Rat11321057348379673483994Ratregion
38746D5Rat11719655327483853275044Ratregion
38768D5Rat10014456617408066174226Ratregion
40272D5Rat13814756213209362132240Ratregion
40280D5Rat13616255873725558737417Ratregion
39150D5Rat10420056925722469257424Ratregion
39252D5Rat7523857405864074058878Ratregion
39344D5Rat14324957480875974809008Ratregion
39402D5Rat13924656856377068564008Ratregion
42316D5Rat25320654492654444926750Ratregion
42317D5Rat25220254406941944069621Ratregion
42318D5Rat25414154959378349593924Ratregion
42744D5Rat22523756291968262919913Ratregion
42745D5Rat22723856151334261513580Ratregion
42747D5Rat22820757136600871366215Ratregion
42748D5Rat22920257413420674134408Ratregion
42749D5Rat23024657944341179443657Ratregion
42765D5Rat25822658534999385350219Ratregion
41206D5Rat14614757733153277331679Ratregion
41250D5Rat14028556416853864168813Ratregion
41250D5Rat14028556416859964168813Ratregion
41314D5Rat14113556807141868071553Ratregion
41318D5Rat14713358239439282394565Ratregion
40790D5Rat13720556303981863040023Ratregion
41072D5Rat13320354779785647798053Ratregion
41104D5Rat13521455668076356680977Ratregion
41800D5Rat19513756260545262605589Ratregion
43232D1Got6813855274058152742270Ratregion
43730D3Got12414957127070771270856Ratregion
43895D5Got618556776813267768317Ratregion
43896D5Got13810456635427166354375Ratregion
43897D5Got12325056928512869285378Ratregion
43899D5Got717956397254563972724Ratregion
43901D5Wox515457464717274647338Ratregion
43906D5Got1023457645349476453730Ratregion
43907D5Got1221557747701677477231Ratregion
43908D5Got1125557749607877496333Ratregion
43909D5Got1427857780413377804411Ratregion
43910D5Got1527657821351378213789Ratregion
43911D5Got1917557793466977934844Ratregion
43913D5Got1715557895312778953282Ratregion
43914D5Got1816657903139279031558Ratregion
43915D5Got1613457961481279614946Ratregion
43917D5Got2017758183724581837422Ratregion
43918D5Got2222958247860682478831Ratregion
43919D5Got12417358253949782539670Ratregion
43920D5Got2319658376654383766739Ratregion
43921D5Got12622458499908584999311Ratregion
43922D5Got2112558528618185286306Ratregion
43923D5Got12516158592818985928350Ratregion
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5065928BE11617616556849325768493422Ratregion
5060320AW53137820457460790074608104Ratregion
5061862AI70995017657158036171580537Ratregion
5061976BF39703330856399519963995507Ratregion
5065204BE12117617757156234971562526Ratregion
5060412BE09806216155794661157946772Ratregion
5060456BE09813420855784428857844496Ratregion
5064002AA95600113857145552471455662Ratregion
5060776BF38911915956975430369754462Ratregion
5060886BI28681812257957986879579990Ratregion
5060924BI28698021255715539657155608Ratregion
5064248BE12087118554683645146836636Ratregion
5064292AW52991615456393812663938280Ratregion
5065932BE11619221354782634147826554Ratregion
5066094BE11680915257667077276670924Ratregion
5061094AW53223218255953275559532937Ratregion
5064470BF39928715756367816863678325Ratregion
5066236PMC123076P145754842940548429862Ratregion
5063022BI30115316054697698646977146Ratregion
5063040BF39828018357901890379019086Ratregion
5064654BI30249517557274248072742655Ratregion
5064704BE10835715656044811760448273Ratregion
5066408AU04837415856037196760372125Ratregion
5061464BE10523919954965420449654403Ratregion
5063282BI30163820156319848763198688Ratregion
5084230AA84882920856767853367678741Ratregion
5086042BE10377819056833001168330201Ratregion
5087086AA92446017356249813262498305Ratregion
5087100AW52324025356017250760172760Ratregion
5087354AI55527118557191136771911552Ratregion
5087500PMC20962P120756063021460630421Ratregion
5086481BM38649018157379969073799871Ratregion
5086551BM38581316357141457671414739Ratregion
5086604BF28494415555664290956643064Ratregion
5087743Cnr118354842993348430116Ratregion
5089805AU04937413555554634255546477Ratregion
5089807AU04937529356652837766528670Ratregion
5087484PMC207565P114156780109567801236Ratregion
5087873Fin1613756685302466853161Ratregion
5089973AU04947422057184437671844596Ratregion
5083129BF39082416656248033062480496Ratregion
5089289AU04906720856136478961364997Ratregion
5089381AU04912228055185349851853780Ratregion
5083585BF39192918256036465360364834Ratregion
5083605BI28298721956160712861607347Ratregion
5088349AU04851620157636775876367959Ratregion
5088517AU04861629854876595048766250Ratregion
5088573AU04865015055478903554789185Ratregion
5089451AU04916421855937693559377153Ratregion
5089535AU04921322756219378062194007Ratregion
5083729AI10538221656833188768332103Ratregion
5088757AU04875914357312353173123676Ratregion
5089575AU04923717157926627979266450Ratregion
5089585AU04924214157196357071963711Ratregion
5090391AU04972328858269905382699341Ratregion
5090091AU04954426855737239257372662Ratregion
5085028AI00898720756767986367680070Ratregion
5087712Bag121155606852756068738Ratregion
5085433BE09684617957696927876969457Ratregion
5088519AU04861727054755047347550743Ratregion
5085216BE09645715357245671472456867Ratregion
5085222Tlr417858015806080158238Ratregion
5085369BQ20134119357272625972726452Ratregion
5090299AU04966822456758368467583908Ratregion
5081276RH14206719756088413760884334Ratregion
5085421AI59878717357338110573381278Ratregion
5085728BQ20195021455964340359643617Ratregion
5085774BQ21140718657152808271528268Ratregion
5090297AU04966725254694954246949794Ratregion
5089019AU04890726554673557446735839Ratregion
5089159AU04899017256014247660142652Ratregion
5089217AU04902527156127103261271303Ratregion
5081408AI50195418057145638471456564Ratregion
5082477BI27480918754892811148928298Ratregion
5082477BI27480918754892811148928298Ratregion
5086012BM38381020556037835660378561Ratregion
5081290RH14207520655957228159572487Ratregion
5084832AI17218917756849559968495779Ratregion
5083073BF39075615157376644173766592Ratregion
5083079BF39077616756240251162402678Ratregion
5081551BE11731217255794817557948347Ratregion
5081577BE11747320554718805047188255Ratregion
5085677AW52687012257656466676564788Ratregion
5083487BF39148914656800775968007905Ratregion
5086813BE10736515557463759674637751Ratregion
5081711BF40846912457415792374158047Ratregion
5081767BE11811517054721382147213995Ratregion
5081895BE11868016658248456082484726Ratregion
5081903BE11871916956299916362999332Ratregion
5081911BE11874016155782107357821234Ratregion
5085808BF38741715157900872979008880Ratregion
5085958AI13709621856819073868190956Ratregion
5083757AI00976812657574935875749484Ratregion
5083867AI23085120257416374974163951Ratregion
5503156TESK1-138655769541657696422Ratregion
5503542PALM2__581972157244868372449552Ratregion
5503542PALM2__581972157244883172449552Ratregion
5503813CDW92_935072456819137468192098Ratregion
5503954Klf455257028191770283119Ratregion
5504222RH7997520756819085068191057Ratregion
5505134Ambp74957657284776573596Ratregion
5505251Ccl21a34055698069256981115Ratregion
5505568UniSTS:482606142254842873348430155Ratregion
5505352Atp6v1g114857696543276966960Ratregion
5505762UniSTS:492614130557144559671446901Ratregion
5506000UniSTS:496823055682913256829498Ratregion
5506240Sctt01136857463264374633011Ratregion
5500174D4Mit22945056147419161474641Ratregion
5500280D2S213811556194776161947876Ratregion
5499827UniSTS:23489145754912034149120798Ratregion
5499831UniSTS:23489626154938794649388207Ratregion
5499833UniSTS:23491823756068225960682496Ratregion
5499841UniSTS:23494015657901489779015053Ratregion
5500250AW55337636955692976356930133Ratregion
5500352GDB:28063017556006636660066541Ratregion
5500475Aqp3055624008156241431Ratregion
5500699RH7967727955826316458263443Ratregion
5500729D19S40990457379811873799022Ratregion
5503490ZNF618__471460257655853076559132Ratregion
5500947MARC_9753-9754:996688568:167756039741860398095Ratregion
5500961MARC_9998-9999:997196716:1128255780827057809552Ratregion
5500997PMC114562P441655781802457818440Ratregion
5501061PMC133552P235356236923462369588Ratregion
5501434Sod224156625852166258762Ratregion
5501470D9S187E7156973380869733879Ratregion
5501576RH7492923355826320158263434Ratregion
5501838MARC_15327-15328:1017321397:179856399472063995518Ratregion
5501906MARC_17336-17337:1021394418:162555749883257499457Ratregion
5501964MARC_21252-21253:1032892750:126457178090071781164Ratregion
5502241AF0049278955690449356904582Ratregion
6904171D5Uwm8127457771465477714928Ratregion
62505D5Uia535358224118482241537Ratregion
5048442RH13290618056079646660796646Ratregion
5048446RH13290820756141824961418457Ratregion
6904163D5Uwm7730057752186077522160Ratregion
6904165D5Uwm7826357754076277541025Ratregion
6904167D5Uwm7924757758593877586187Ratregion
6904169D5Uwm8028357763271877633001Ratregion
6904173D5Uwm8227457774323977743513Ratregion
6904175D5Uwm8329057778640477786694Ratregion
6904177D5Uwm8427657779107677791352Ratregion
6904177D5Uwm8427657779107677791604Ratregion
6904177D5Uwm8427657779124077791352Ratregion
6904179D5Uwm8525457781615577816409Ratregion
6904181D5Uwm8629357781946577819841Ratregion
6904181D5Uwm8629357781954877819841Ratregion
6904183D5Uwm8721157796053577960746Ratregion
6904185D5Uwm8825857798860477988860Ratregion
6904187D5Uwm8922057799815177998371Ratregion
6904189D5Uwm9022157800587678006099Ratregion
6904191D5Uwm9121557801870678018921Ratregion
6904193D5Uwm9224257803884078039084Ratregion
6904195D5Uwm9317857810195878102136Ratregion
6904197D5Uwm9414657819183078191978Ratregion
6904199D5Uwm9526257855420578554465Ratregion
6904201D5Uwm9628757866221078662497Ratregion
6904203D5Uwm9727557961821779618492Ratregion
6904205D5Uwm9822158014535980145576Ratregion
Position Markers

Flank 1: (D5Mgh5)
Rat AssemblyChrPosition (strand)Source
GRCr8548,523,123 - 48,523,299 (+)Marker Load Pipeline
mRatBN7.2543,726,656 - 43,726,832 (+)MAPPER
Rnor_6.0544,404,276 - 44,404,451NCBI
Rnor_5.0549,028,773 - 49,028,948UniSTS
RGSC_v3.4545,499,364 - 45,499,540RGD
RGSC_v3.4545,499,365 - 45,499,540UniSTS
RGSC_v3.1545,499,544 - 45,499,719RGD
Celera542,531,874 - 42,532,049UniSTS
RH 3.4 Map5230.1UniSTS
RH 3.4 Map5230.1RGD
RH 2.0 Map5264.8RGD
SHRSP x BN Map522.8299RGD
Cytogenetic Map5 RGD
Peak: (D5Mgh25) No map positions available.
Flank 2: (D5Rat19)
Rat AssemblyChrPosition (strand)Source
GRCr8591,770,162 - 91,770,353 (+)Marker Load Pipeline
mRatBN7.2586,723,827 - 86,724,018 (+)MAPPER
Rnor_6.0589,431,852 - 89,432,042NCBI
Rnor_5.0593,491,167 - 93,491,357UniSTS
RGSC_v3.4590,620,265 - 90,620,456RGD
RGSC_v3.4590,620,266 - 90,620,456UniSTS
RGSC_v3.1590,625,378 - 90,625,569RGD
Celera585,479,111 - 85,479,301UniSTS
FHH x ACI Map544.62RGD
FHH x ACI Map544.62UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57781615577988860Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
1598868Mcs12Mammary carcinoma susceptibility QTL 120.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)55897344960051321Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
6907110Mcs28Mammary carcinoma susceptibility QTL 28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57774323978039084Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1598814Mcs13Mammary carcinoma susceptibility QTL 130.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)56319089069927503Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)58384059897059958Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1598845Mcs14Mammary carcinoma susceptibility QTL 140.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57636977680813390Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl26


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-24 Scl26  Serum cholesterol level QTL 26  Scl26  Serum cholesterol QTL 26  Name updated 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general serum total cholesterol value, low salt diet following Lasix injection 70849
qtl_general additional information, including phenotype and mapping information, can be found at A genomics-systems biology map for cardiovascular function 70849