Srn3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Srn3 (Serum renin concentration QTL 3) Rattus norvegicus

Symbol: Srn3
Name: Serum renin concentration QTL 3
RGD ID: 1300140
Previously known as: Specialized Center of Research QTL 112; SCOR112
Trait: blood renin amount   (VT:0003349)    
Measurement Type: plasma renin activity level   (CMO:0000116)    
LOD Score: 3.19
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,875,168 - 30,883,947RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01416,336,988 - 33,163,485RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01416,262,980 - 32,957,654RGDRnor5.0
RGSC_v3.41416,432,517 - 33,157,602RGDRGSC3.4
RGSC_v3.11416,432,792 - 33,157,602RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
kidney disease  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/SsNHsd  (IEA)
SS/JrHsdMcwi  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genomic map of cardiovascular phenotypes of hypertension in female Dahl S rats. Moreno C, etal., Physiol Genomics 2003 Nov 11;15(3):243-57. Epub 2003 Oct 07.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69432Ugt2a1UDP glucuronosyltransferase family 2 member A1142052101820545934Rat
70069Cxcl2C-X-C motif chemokine ligand 2141718103017183075Rat
2065Afpalpha-fetoprotein141757341217591476Rat
3936Ugt2bUDP glycosyltransferase 2 family, polypeptide B142063057220665062Rat
70548Ppbppro-platelet basic protein141730232617303130Rat
3305Pf4platelet factor 4141729830417299220Rat
2085Albalbumin141760739717622814Rat
2149Aregamphiregulin141697218516981443Rat
61981Csn2casein beta142032258120329818Rat
2101Ambnameloblastin141960176119614382Rat
3937Ugt2b37UDP-glucuronosyltransferase 2 family, member 37142081728520833917Rat
70513Gnrhrgonadotropin releasing hormone receptor142185687121874861Rat
619926Nup54nucleoporin 54141561763015636029Rat
3953Smr3bsubmaxillary gland androgen regulated protein 3B141978381519788557Rat
61990Csn3casein kappa142015403220160585Rat
628798Cxcl9C-X-C motif chemokine ligand 9141572286815727779Rat
628614Afmafamin141753102217563868Rat
620667Dckdeoxycytidine kinase141930521819326247Rat
619869Cxcl1C-X-C motif chemokine ligand 1141719336417195143Rat
628833Art3ADP-ribosyltransferase 3141563723015719442Rat
620831Epha5EPH receptor A5142365339324020129Rat
620209Cxcl10C-X-C motif chemokine ligand 10141570477215706969Rat
620299Eregepiregulin141702728717041062Rat
2667GcGC, vitamin D binding protein141863214618667563Rat
708342Parm1prostate androgen-regulated mucin-like protein 1141646830916577339Rat
708417Ugt2b7UDP glucuronosyltransferase family 2 member B7142089668220919604Rat
620168Npffr2neuropeptide FF receptor 2141851312018558074Rat
621604Uso1USO1 vesicle transport factor141586663815932185Rat
621706Ythdc1YTH N6-methyladenosine RNA binding protein C1142118543821215934Rat
708534Sult1b1sulfotransferase family 1B member 1142049276320505491Rat
620983Oprpnopiorphin prepropeptide141970253519717550Rat
621152Csn1s2acasein alpha s2-like A142028116720295232Rat
620491Sult1d1sulfotransferase family 1D, member 1142044113520476341Rat
621069RestRE1-silencing transcription factor143085910930879828Rat
620275Btcbetacellulin141670844716746961Rat
68936Slc4a4solute carrier family 4 member 4141884128919293297Rat
621812Cxcl3C-X-C motif chemokine ligand 3141728772717289451Rat
3954Vcsa2variable coding sequence A2141985123219857697Rat
1302967Tmprss11ctransmembrane protease, serine 11C142178207621840517Rat
1304608Tecrltrans-2,3-enoyl-CoA reductase-like142473224124805272Rat
727827Cxcl11C-X-C motif chemokine ligand 11141568943215692207Rat
628623Ugt2b15UDP glucuronosyltransferase family 2 member B15142076801520783599Rat
708540Cxcl6C-X-C motif chemokine ligand 6141731079017312250Rat
1303278Tmprss11btransmembrane serine protease 11B142138393621407283Rat
620895Ugt2b35UDP glucuronosyltransferase 2 family, polypeptide B35142085344120891039Rat
620836Adgrl3adhesion G protein-coupled receptor L3142633632027104060Rat
621882Scarb2scavenger receptor class B, member 2141555827115609813Rat
620592Cabs1calcium binding protein, spermatid associated 1142009696220099024Rat
708541Ugt2b1UDP glucuronosyltransferase 2 family, polypeptide B1142102403521035784Rat
1305114Mob1bMOB kinase activator 1B141933305819365845Rat
2430Csn1s1casein alpha s1142034362020359614Rat
1308540Utp3UTP3, small subunit processome component141951571619517370Rat
1306446Tmprss11gtransmembrane protease, serine 11G142154608721587258Rat
1308523Ccdc158coiled-coil domain containing 158141541117815468579Rat
1307405Septin11septin 11141484475914990856Rat
3776Sult1e1sulfotransferase family 1E member 1142042232420439562Rat
1308324Uba6ubiquitin-like modifier activating enzyme 6142188403921947857Rat
1310879Mthfd2lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like141708994717170036Rat
1311994Sowahbsosondowah ankyrin repeat domain family member B141502920315033038Rat
1308444Ugt2a3UDP glucuronosyltransferase family 2 member A3142057279320590795Rat
1310750Adamts3ADAM metallopeptidase with thrombospondin type 1, motif 3141823112818437771Rat
1310858Grsf1G-rich RNA sequence binding factor 1141941294419429364Rat
1311584Stap1signal transducing adaptor family member 1142195046621981395Rat
1310470Shroom3shroom family member 3141509941515396832Rat
1307267NaaaN-acylethanolamine acid amidase141577730615796411Rat
1306201Igfbp7insulin-like growth factor binding protein 7143073741430797317Rat
1309477Polr2bRNA polymerase II subunit B143079722830834916Rat
1310094Thap6THAP domain containing 6141609291916113528Rat
1309209Ccnicyclin I141487969814902510Rat
1309571G3bp2G3BP stress granule assembly factor 2141593240316020555Rat
1310155Jchainjoining chain of multimeric IgA and IgM141953892719547023Rat
1309625Cdkl2cyclin dependent kinase like 2141602738116063257Rat
1306796Enamenamelin141955672919581433Rat
1307093Ppef2protein phosphatase with EF-hand domain 2141579741415831620Rat
1309989Ugt2b10UDP glucuronosyltransferase 2 family, polypeptide B10142110799621128648Rat
1310384Prr27proline rich 27142023275720248617Rat
620654Tmprss11dtransmembrane serine protease 11D142170733621769398Rat
1561381RGD1561381similar to microsomal glutathione S-transferase 3141952550919526128Rat
1561929Albfm1albumin superfamily member 1141747815917525047Rat
1561698Tmprss11etransmembrane serine protease 11E142128358721328203Rat
1563299Smr3asubmaxillary gland androgen regulated protein 3A142005377920059568Rat
1560084Epgnepithelial mitogen141707677417084806Rat
1561589RGD1561589similar to RIKEN cDNA 5730434I03 gene143000513830006045Rat
1565664RGD1565664similar to UDP-glucuronosyltransferase 2B1 precursor, microsomal (UDPGTR-2)142105672621082314Rat
1565048RGD1565048similar to 60S ribosomal protein L9142364807023648731Rat
1561883Odamodontogenic, ameloblast associated142019328620202517Rat
1559459RGD1559459similar to Expressed sequence AI788959142114614021167706Rat
1303061Cenpccentromere protein C142198806722046732Rat
1359468Fdcspfollicular dendritic cell secreted protein142016969120173983Rat
1562348Ankrd17ankyrin repeat domain 17141772323917861841Rat
628794Csn1s2bcasein alpha s2-like B142025025720266377Rat
1309071Dzip1-ps1DAZ interacting protein 1, pseudogene 1142022723420229292Rat
1562394Rpl30-ps7ribosomal protein L30, pseudogene 7142038186220382205Rat
1311800Stbd1starch binding domain 1141547045215473857Rat
1566082Rassf6Ras association domain family member 6141743332817473565Rat
1560675Tmprss11ftransmembrane serine protease 11F142149289621534792Rat
1359112Sdad1SDA1 domain containing 1141574148915768271Rat
1559547Cox18cytochrome c oxidase assembly factor COX18141786458117877483Rat
1565242Rufy3RUN and FYVE domain containing 3141943153019506476Rat
1359460Noa1nitric oxide associated 1143083526430851294Rat
1589974Stathstatherin142030732420311182Rat
1587531Hsp90aa1-ps3heat shock protein 90 alpha family class A member 1, pseudogene 3142110398421106561Rat
1585182Pgk1-ps10phosphoglycerate kinase 1, pseudogene 10142321415023215412Rat
1359180Rchy1ring finger and CHY zinc finger domain containing 1141611326316129017Rat
1585459Fam47efamily with sequence similarity 47, member E141548553715521599Rat
1587539LOC689841similar to Rho GTPase activating protein 11A142108834521089685Rat
1587481Rpl23a-ps20ribosomal protein L23a, pseudogene 20142137904921379588Rat
1587388Eno1-ps24enolase 1, pseudogene 24141723383917238216Rat
1595834Kbtbd8-ps2kelch repeat and BTB domain containing 8, pseudogene 2142068833320695396Rat
1592356Amtnamelotin141964862419661181Rat
1588690LOC689798similar to UDP-glucuronosyltransferase142094444920955564Rat
1597019Ipo7-ps2importin 7, pseudogene 2142948016729483689Rat
1597129Ppid-ps14peptidylprolyl isomerase D, pseudogene 14142009065620093812Rat
1597130Rpl8-ps4ribosomal protein L8, pseudogene 4141769362617694361Rat
1596322Tmprss11atransmembrane serine protease 11A142162488121665284Rat
2318302Smokl-ps6sperm motility kinase like, pseudogene 6142267773222682199Rat
2321603Ugt2b-ps1UDP glycosyltransferase 2 family, polypeptide B, pseudogene 1142071753520739142Rat
2321083Ppial4dpeptidylprolyl isomerase A (cyclophilin A)-like 4D142100652221007284Rat
2321178Atp5mc2-ps2ATP synthase membrane subunit c locus 2, pseudogene 2142146267421463166Rat
2324284Acer3-ps1alkaline ceramidase 3, pseudogene 1142572905125729730Rat
2324321Mobp-ps1myelin-associated oligodendrocyte basic protein, pseudogene 1142350234823502821Rat
2324510Dus4l-ps1dihydrouridine synthase 4-like, pseudogene 1142327997423280735Rat
6489816Odaphodontogenesis associated phosphoprotein141607183516080151Rat
6496885Hnrnpa1-ps40heterogeneous nuclear ribonucleoprotein A1, pseudogene 40142096235220965420Rat
7489037Mir6321microRNA 6321141945931719459457Rat
7496786LOC102546535uncharacterized LOC102546535141613716416153244Rat
7513863LOC102546751uncharacterized LOC102546751142601753826019528Rat
7623930LOC102549397zinc finger protein 120-like142569958225701112Rat
7618949LOC102549742uncharacterized LOC102549742141729471617295743Rat
7690127LOC102551339uncharacterized LOC102551339143049803330624872Rat
9195730Ugt2b4l-ps1UDP glucuronosyltransferase family 2 member B4 like, pseudogene 1142103826621042369Rat
9201561Rpl39-ps12ribosomal protein L39, pseudogene 12143075806730758425Rat
9371121Ybx1-ps3Y box binding protein 1, pseudogene 3141550416115505736Rat
9399075LOC103692776uncharacterized LOC103692776142180985621825718Rat
11434380LOC108352824SMR1 protein-like141990080819909091Rat
11456987LOC108352849small nuclear ribonucleoprotein G pseudogene142763159327632651Rat
11446409LOC108352727uncharacterized LOC108352727142019566120214723Rat
11438225LOC108352732uncharacterized LOC108352732142621490926225971Rat
11438234Trnac-gca38transfer RNA cysteine (anticodon GCA) 38143075871030758781Rat
11361880LOC108352720uncharacterized LOC108352720141525594615263468Rat
11432687LOC108352729uncharacterized LOC108352729142121603021241866Rat
11405419LOC108352841uncharacterized LOC108352841142647842326487525Rat
11375289LOC108352723uncharacterized LOC108352723141730476017307239Rat
11375302LOC108352734uncharacterized LOC108352734143039064930402623Rat
11377841LOC10835271960S ribosomal protein L12 pseudogene141521672215217306Rat
11380862LOC108352728uncharacterized LOC108352728142039739320404391Rat
11503027LOC108352825protein transport protein Sec61 subunit gamma pseudogene142556696925655719Rat
11497443Acta1-ps1actin, alpha 1, skeletal muscle, pseudogene 1142211410422114971Rat
41322366LOC120096527uncharacterized LOC120096527142300644523041321Rat
41281688LOC120096803small nucleolar RNA SNORA17141816018618160317Rat
41382898LOC120096589uncharacterized LOC120096589142066552120675111Rat
41325492LOC120096723ferritin light chain 1-like142605035526050863Rat
41091691LOC120096812small nucleolar RNA SNORA17143047591730476044Rat
41115972LOC120093066uncharacterized LOC120093066141733898417370314Rat
41280434Rangrf-ps3RAN guanine nucleotide release factor, pseudogene 3143075131230753398Rat
41360123LOC120096590uncharacterized LOC120096590142067519020682835Rat
41092069Trnap-ggg10transfer RNA proline (anticodon GGG) 10142989397029894044Rat
41119499LOC120096819small nucleolar RNA SNORA17142437744624377574Rat
41363359LOC120096750U6 spliceosomal RNA142532491125325017Rat
41094695LOC120096581oogenesin-3-like141630545616306013Rat
41094989LOC120096729uncharacterized LOC120096729143077506730780888Rat
41120328LOC120096794small Cajal body-specific RNA 23141601655616016682Rat
41097334Cwf19l1-ps1CWF19 like cell cycle control factor 1, pseudogene 1141568179415689181Rat
41151227LOC120096857U4 spliceosomal RNA142925528129255363Rat
41189227LOC120096526UDP-glucuronosyltransferase 2B17-like142080250220807337Rat
41098044LOC120096575uncharacterized LOC120096575141543651015439033Rat
41154061LOC120096593uncharacterized LOC120096593142792582727940488Rat
41155403Ugt2b17-ps1UDP glucuronosyltransferase family 2 member B17, pseudogene 1142074059920745728Rat
41179800LOC120096787small nucleolar RNA SNORA13142831380228313928Rat
41265197LOC120096791small Cajal body-specific RNA 4141562251715622646Rat
41288113LOC120096834U6atac minor spliceosomal RNA141575059415750708Rat
41395196LOC120096806U1 spliceosomal RNA142197358221973761Rat
41155602Sec61g-ps2Sec61 translocon subunit gamma, pseudogene 2141604012616042214Rat
41180782Mrpl30-ps1mitochondrial ribosomal protein L30, pseudogene 1141534458915345964Rat
41102643LOC120096799small nucleolar RNA SNORA48141667595116676080Rat
41126636LOC120096747U6 spliceosomal RNA141742200317422114Rat
41182668LOC120096852U2 spliceosomal RNA142163718321637302Rat
41398362LOC120096810small nucleolar RNA SNORA17142942757529427704Rat
41271520LOC120096582uncharacterized LOC120096582141748290017529510Rat
41374531LOC120096730uncharacterized LOC120096730143075052230755635Rat
41375215LOC120096779small nucleolar RNA SNORA70141500957415009708Rat
41273802LOC120096585uncharacterized LOC120096585142040441720406946Rat
41296642LOC120096828U1 spliceosomal RNA142357271223572874Rat
41378079LOC120096837small nucleolar RNA U13141596638315966493Rat
41404100LOC120096579uncharacterized LOC120096579141651140116643441Rat
41134169LOC120096591uncharacterized LOC120096591142226463822347467Rat
40949163LOC120096576uncharacterized LOC120096576141581014015814669Rat
40949335Srp19-ps1signal recognition particle 19, pseudogene 1141876858218769192Rat
40949944LOC120096866U6 spliceosomal RNA142139165121391757Rat
40974171LOC120096782small nucleolar RNA SNORA57141587592315876063Rat
40950797LOC120096528uncharacterized LOC120096528142765058027663108Rat
40975998LOC120096832small nucleolar RNA SNORA76141963029219630423Rat
41015304LOC120096809small nucleolar RNA SNORA17141839961018399737Rat
40986009LOC120096830small nucleolar RNA SNORA17142445330224453395Rat
40988626LOC120096592uncharacterized LOC120096592142430608824337634Rat
41008131Lamtor2-ps1late endosomal/lysosomal adaptor, MAPK and MTOR activator 2, pseudogene 1141596783615968234Rat
40992817LOC120096583uncharacterized LOC120096583141846781518488097Rat
41256287LOC120096584uncharacterized LOC120096584142013075920172275Rat
41335342LOC120096578uncharacterized LOC120096578141600897916028574Rat
41057074LOC120096753U1 spliceosomal RNA142224747522247636Rat
41057597LOC120096580uncharacterized LOC120096580141665340216669293Rat
41221305LOC120096588uncharacterized LOC120096588142059933820650775Rat
41062143LOC120096755U6 spliceosomal RNA142809365428093760Rat
41227516LOC120096802small nucleolar RNA SNORA17141828413118284262Rat
41038991LOC120096781small nucleolar RNA SNORD113/SNORD114 family142836562528365700Rat
41041616LOC120096859U4 spliceosomal RNA141985066119850849Rat
41043845Kbtbd8-ps1kelch repeat and BTB domain containing 8, pseudogene 1142061325720620826Rat
41074429LOC120096874U6 spliceosomal RNA143054888330548989Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10113D14Mit2194141759357517593761Ratregion
10135D14Wox11135141762256217622685Ratregion
10622D14Mgh3120141863134518631470Ratregion
10623D14Wox12194141864404318644232Ratregion
11077D14Wox18147141730012517300272Ratregion
11078D14Mgh10235141730006917300296Ratregion
11482D14Wox13194141984803919848270Ratregion
11482D14Wox13194141985881119859012Ratregion
11483D14Wox17141985879219859003Ratregion
33551D14Mit6191141827449818274691Ratregion
35342D14Rat8132143032009230320216Ratregion
36520D14Rat7168142283307822833252Ratregion
34890D14Rat9130142803506828035204Ratregion
34965D14Rat10176143088377730883947Ratregion
35965D14Rat6174141487516814875342Ratregion
39598D14Rat81202142119949321199724Ratregion
38486D14Rat41140142658520526585343Ratregion
40104D14Rat99237142453123024531477Ratregion
38932D14Rat36145143076702530767156Ratregion
39138D14Rat50232142541088525411143Ratregion
39174D14Rat55219142565635625656577Ratregion
41990D14Arb16120142121750821217635Ratregion
41992D14Arb17190141864401218644233Ratregion
41996D14Arb3277141729924417299529Ratregion
41998D14Arb4246141762249617622741Ratregion
42002D14Arb6300142043920720439526Ratregion
43015D14Rat116146142766793827668085Ratregion
42390D14Rat143119141821258418212709Ratregion
40834D14Rat78104141599509915995211Ratregion
40930D14Rat82211142820319428203397Ratregion
41690D14Rat102200141817462718174822Ratregion
45155D14Got19197141555212315552320Ratregion
45156D14Got22299141542937215429671Ratregion
45158D14Got18171141555998715560158Ratregion
45159D14Got20178141558915315589333Ratregion
45160D14Wox2186141668310216683292Ratregion
45162D14Got23198141749136017491558Ratregion
45163D14Got25175141797429517974470Ratregion
45164D14Got26138141815274618152886Ratregion
45165D14Got29133142034430420344439Ratregion
45166D14Got33254142565639825656652Ratregion
45167D14Got32197142443885524439049Ratregion
45169D14Got38253142772958727729840Ratregion
45170D14Got36122142820683028206952Ratregion
45171D14Got37176142798495727985134Ratregion
45172D14Got39139143038862130388760Ratregion
45173D14Got89263143051866230518925Ratregion
45187D14Got35119142746395527464076Ratregion
60762D14Wox10100141762256117622640Ratregion
60763D14Wox3191142137954621379735Ratregion
60058D14Got24150141756528517565435Ratregion
60059D14Got2791141880112418801217Ratregion
60060D14Got28169141880108718801258Ratregion
60061D14Got30283141964900219649280Ratregion
738055D14Hmgc4247141984801919848266Ratregion
738057D14Hmgc5198142177574021775938Ratregion
738059D14Hmgc3144141773143117731575Ratregion
738061D14Hmgc6155142368553923685694Ratregion
738061D14Hmgc6155142368553923685855Ratregion
738061D14Hmgc6155142368557123685694Ratregion
66577D14Mco8210142128638821286593Ratregion
66697D14Uia4227142250750422507731Ratregion
67231D14Arb18128142036015820360286Ratregion
1630530D14Wox31290142042160720421896Ratregion
1630716D14Got134162141740246517402624Ratregion
1627952D14Got142215141570245515702672Ratregion
1633391D14Got130171141797433417974505Ratregion
1634893D14Got129185141732957717329764Ratregion
1635397D14Wox19142043937820439524Ratregion
1637138D14Ulb1304141562902915629335Ratregion
1634245D14Got132266141515146815151734Ratregion
4145308D14Hmgc11293141592753015927824Ratregion
4145310D14Hmgc10247141588074515880993Ratregion
4145312D14Hmgc12163141594176015941924Ratregion
4145314D14Hmgc9229141587577815876008Ratregion
4145316D14Hmgc13233141599212815992362Ratregion
7205986Ppia150142100663421006784Ratregion
7193050U27267123141731111917311242Ratregion
7206728stSG6070150141579705515798143Ratregion
5035881PMC275467P5941141757579717576738Ratregion
5038634BB23255183141942923919429322Ratregion
5036007PMC84675P1646143086409030864736Ratregion
5038904RH127399220142294759422947813Ratregion
5039006RH127459183141786069517860878Ratregion
5039034RH127475150141612868016128830Ratregion
5033979RH140889183141586682415867007Ratregion
7206204Afp165141757449317575848Ratregion
5029231RH144013126141561096515611091Ratregion
5029309RH144308200141564605015646250Ratregion
5035130BE096355184141934132219341506Ratregion
5032369C87704114141951584719515961Ratregion
5027147WI-17713156142130128821301444Ratregion
5027295C80280115141942893519429050Ratregion
5027297AW557551132141951594119516073Ratregion
5032815RH135403185143079371230793897Ratregion
5032909RH136935183142195577521955958Ratregion
5025000AU022345228143085095930851187Ratregion
5025002BB446153103142194468521944788Ratregion
5030321BE105744151142047497320475124Ratregion
502794338.MMHAP88FLE5.seq158142229442622294584Ratregion
5033467RH138942129142706719327067322Ratregion
5033653RH139612191141646865216468843Ratregion
5025620RH129019188141563726015637448Ratregion
5028253D4Mit35368142416042724160495Ratregion
5030903BF399292192141489982814900020Ratregion
5028446U27267125141731069517310820Ratregion
5051392AI118071132142083348420833616Ratregion
5051395AW548875104141490937314909477Ratregion
5055895RH144064138142637447926374617Ratregion
5056659RH144506104141850554418505648Ratregion
5059482BI291183150141780692017807070Ratregion
5052446RH118291195141646350016463695Ratregion
5055291RH143716108141607185716071965Ratregion
5052863RH142317154142185529221855446Ratregion
5052931RH142357199141490201414902213Ratregion
5059996BI285802182141757344517574505Ratregion
5058266BI277889158141586813815868296Ratregion
5058372BG376722142141943274319432885Ratregion
5050370RH134017193141508981515090008Ratregion
5052444X53798109141718166117181770Ratregion
5052597RH125852248141601789216018140Ratregion
5052849RH142310181141570642515706606Ratregion
5053017RH142406182141719361617193797Ratregion
5051260RH134531183141944156919441752Ratregion
5054207RH143092126142688107626881202Ratregion
5041868RH129105152141729830817298460Ratregion
5044308RH130528218141570665415706872Ratregion
5044388RH1305740142187680321876981Ratregion
5041440RH128858220141569198815692208Ratregion
5046174RH131601187142663297726633164Ratregion
5046266RH131654202141943190719432110Ratregion
5046504RH131791209141602161116021820Ratregion
5047872RH132577182141787728617877468Ratregion
5049022RH133241198141933259419332792Ratregion
5046618RH131857220142365497323655193Ratregion
5049072RH133270180141954605019546230Ratregion
5049354RH133432196143085094730851143Ratregion
5047124RH132147209141942884419429053Ratregion
5048378RH132869186141932924219329428Ratregion
5048406RH132885212141944121219441424Ratregion
5039938RH127994183141561208015612263Ratregion
5042652RH129562210142032860420329657Ratregion
5039814RH127922217142065173020651948Ratregion
7192214Pf40141729870017299140Ratregion
5041078RH128650180141610158116101761Ratregion
5041152RH128692220141509950615099726Ratregion
5072726RH137017185141490229914902484Ratregion
5072436RH136848203141490896114909164Ratregion
5072524RH136899192141606304416063236Ratregion
5074204RH137881177142194461921944796Ratregion
5076386RH139145167141490937814909545Ratregion
5076506RH139215174143080232330803044Ratregion
5075520RH138641144142050521120505355Ratregion
5075572RH138671177141490715614907333Ratregion
5079754RH141183197141601871016018907Ratregion
5079956RH141300203141572941515729825Ratregion
5080098RH141381185141930666019306840Ratregion
5080268RH141482211141572812715728338Ratregion
5073362RH137392151141729498217295667Ratregion
5071212RH134952189141674848316748672Ratregion
5071242RH134969216142112829721128513Ratregion
5070640RH134619193142116727821167471Ratregion
5074812RH138232158141709002217090184Ratregion
5061766AW533278157141978385619784013Ratregion
5061802AW52704392141902398119024073Ratregion
5065078AI044222137141572643615727691Ratregion
5067258AU047865130141648255116482681Ratregion
5067360AU047801278141647008616470364Ratregion
5067752AU047557163141597216215972326Ratregion
5068144AU047322140142925392429254064Ratregion
5068512AU047101207141729198917292196Ratregion
5068594AU047051192143062556730625759Ratregion
5068612AU047039231142860733028607561Ratregion
5068754AU046952108142569577425695884Ratregion
5068852AU046886238142766790127668139Ratregion
5070205RH94533106141757342917573535Ratregion
5069716AU046317118141525666815256786Ratregion
5069748AU029143134142124033421240463Ratregion
5060098BF388492135142120298421203119Ratregion
5060344AW531504177142394885223949029Ratregion
5062022BF397208109141603362816033737Ratregion
5060436BE110064167142401834524018512Ratregion
5065806AI045017171141727039617270567Ratregion
5062074BF397398134142658280026582934Ratregion
5063608BE107836151142657432826574479Ratregion
5062318BE106508190141951573519515925Ratregion
5062780AW534411150141488590614886056Ratregion
5064422BI302173206141990277019902977Ratregion
5062824BI295036136141948864119488777Ratregion
5064708BE108365173143086088730861060Ratregion
5061502BE105338153142636484226364995Ratregion
5063246BI301575193143028753430287727Ratregion
5066546AU048293120142294107822941198Ratregion
5086935AA801220210141646878416468994Ratregion
5087526PMC275467P2208141762278117622989Ratregion
5086425AW529895205141943559819435803Ratregion
5082813BF390183163141712783117127994Ratregion
5088951AU048866176141747783617478012Ratregion
5089153AU048986107141543133715431372Ratregion
5089301AU049074121141520273615204218Ratregion
5089689AU049304225141545089715451122Ratregion
5084394AI233864231141726929917269530Ratregion
5082441BI274763218141503260915032827Ratregion
5090713AU049919211143027977830279989Ratregion
5085850AI231703161141932426119324422Ratregion
5086078AA891207188141561187815612066Ratregion
5084530AI176955135141884474318844878Ratregion
5085228AI598408157141775846017758617Ratregion
5085274AI176044198141930715719307352Ratregion
5085569BM390590214141559784515598059Ratregion
5507587Alb1128141762198717622819Ratregion
5503611UniSTS:465369103141761092417611027Ratregion
5504799UniSTS:275850174141757456717575931Ratregion
5504885ha3026130142314500623145136Ratregion
5505022Pf484141729849317298715Ratregion
5505835UniSTS:495883239142365344823653687Ratregion
5506869G46840210141906187019062080Ratregion
5507037fa55h08.s10141723926417239510Ratregion
5507037fa55h08.s10141723926417239611Ratregion
5507253AI0609080141563178515633459Ratregion
5499889UniSTS:235209266141951580719516073Ratregion
5499887UniSTS:235223175141491009514910270Ratregion
5502361RH124614257141786153317861790Ratregion
5503412G34499109141784556517845674Ratregion
5504734PMC86057P4438141762292017623358Ratregion
5501679UniSTS:265677293142100676521007058Ratregion
5501720UniSTS:266988152142400776024007912Ratregion
5502627RH125924233141876873218768964Ratregion
5502847Arhgap11a0142108931021090044Ratregion
6484684D14Uwm13214142811832128118535Ratregion
Position Markers

Flank 1: (D14Rat6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,875,168 - 14,875,342 (+)MAPPER
Rnor_6.01416,336,988 - 16,337,161NCBI
Rnor_5.01416,262,980 - 16,263,153UniSTS
RGSC_v3.41416,432,792 - 16,432,965UniSTS
RGSC_v3.41416,432,517 - 16,433,064RGD
RGSC_v3.11416,432,792 - 16,432,965RGD
Celera1414,277,653 - 14,277,826UniSTS
RH 3.4 Map14170.7RGD
RH 3.4 Map14170.7UniSTS
RH 2.0 Map14196.2RGD
SHRSP x BN Map146.9RGD
Peak: (D14Rat7)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21422,833,078 - 22,833,252 (+)MAPPER
Rnor_6.01424,668,854 - 24,669,027NCBI
Rnor_5.01424,500,018 - 24,500,191UniSTS
RGSC_v3.41424,684,070 - 24,684,244RGD
RGSC_v3.41424,684,071 - 24,684,244UniSTS
RGSC_v3.11424,684,071 - 24,684,244RGD
Celera1422,250,625 - 22,250,798UniSTS
RH 3.4 Map14244.5UniSTS
RH 3.4 Map14244.5RGD
RH 2.0 Map14267.7RGD
SHRSP x BN Map1414.58RGD
FHH x ACI Map1426.1799RGD
Flank 2: (D14Rat10)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21430,883,777 - 30,883,947 (+)MAPPER
Rnor_6.01433,163,316 - 33,163,485NCBI
Rnor_5.01432,957,485 - 32,957,654UniSTS
RGSC_v3.41433,157,432 - 33,157,602RGD
RGSC_v3.41433,157,433 - 33,157,602UniSTS
RGSC_v3.11433,157,433 - 33,157,602RGD
RH 3.4 Map14396.7UniSTS
RH 3.4 Map14396.7RGD
RH 2.0 Map14358.0RGD
SHRSP x BN Map1420.42RGD
FHH x ACI Map1427.2299RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141757341219726296Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
61413Eae10Experimental allergic encephalomyelitis QTL 103.5nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)141762268518274498Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Srn3

RGD Curation Notes
Note Type Note Reference
qtl_general plasma renin, low salt diet following Lasix 727992
qtl_general additional information, including phenotype and mapping information, can be found at Genomic Map of Cardiovascular Phenotypes 727992