Am10 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Am10 (Aortic mass QTL 10) Rattus norvegicus

Symbol: Am10
Name: Aortic mass QTL 10
RGD ID: 12880050
Previously known as: BpamC10QTL3; BpcakmC10QTL3
Trait: aorta mass   (VT:0002845)    
Measurement Type: aorta weight to aorta length to body weight ratio   (CMO:0002722)    
LOD Score: Not Available
P Value: 0.016
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81039,503,487 - 84,503,487RGD_MAPPER_PIPELINE
mRatBN7.21074,372,084 - 84,007,272RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01077,055,741 - 86,962,563RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01076,919,480 - 86,759,484RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41077,956,239 - 87,834,315RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SS.LEW-(D10Rat27-Igfbp4)/Ayd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
hypertension  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait
aorta mass  (IDA)

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7736477Ankfn1ankyrin-repeat and fibronectin type III domain containing 1107421414374602825Rat
41039235LOC120095174uncharacterized LOC120095174107447460174484980Rat
3276Pctpphosphatidylcholine transfer protein107480888774856260Rat
1560541Tmem100transmembrane protein 100107485477974861147Rat
9277135LOC103693415uncharacterized LOC103693415107486760574896150Rat
1592079Mmdmonocyte to macrophage differentiation-associated107507327875101528Rat
1582828HlfHLF transcription factor, PAR bZIP family member107515424475211884Rat
1307903Stxbp4syntaxin binding protein 4107530186875458741Rat
9174727Cox11cytochrome c oxidase copper chaperone COX11107545873575465322Rat
1562626Tom1l1target of myb1 like 1 membrane trafficking protein107546457775508304Rat
2323022Tom1l3target of myb1 like 3 membrane trafficking protein107550835475514764Rat
41213596Trnaa-agc51transfer RNA alanine (anticodon AGC) 51107558624175586315Rat
41357294LOC120095456small nucleolar RNA SNORA17107560813475608254Rat
7629087Rpl35l5ribosomal protein L35 like 5107565667275707890Rat
1566089Gapdhl6glyceraldehyde-3-phosphate dehydrogenase like 6107596050775968953Rat
7691225LOC102548673uncharacterized LOC102548673107607484076093223Rat
2322976Rps24l7ribosomal protein S24 like 7107628936576289879Rat
1359248Kif2bkinesin family member 2B107639416076396379Rat
41295422LOC120095175uncharacterized LOC120095175107715506277216511Rat
1594586Gapdh-ps107Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 107107724356177246188Rat
41003664Ldha-ps29lactate dehydrogenase A, pseudogene 29107756372577564800Rat
41123949LOC120095176uncharacterized LOC120095176107776432977775450Rat
40981583LOC120095439small nucleolar RNA SNORA48107787377177873910Rat
2322930Car10carbonic anhydrase 10107805587578556490Rat
11413531LOC108352121uncharacterized LOC108352121107817849178189087Rat
6493616LOC100911361heterogeneous nuclear ribonucleoprotein A3-like107821773378219237Rat
11395747LOC108352122uncharacterized LOC108352122107844915678475943Rat
9384463LOC103693449ATP synthase-coupling factor 6, mitochondrial pseudogene107862542278625920Rat
9417566Tmsb10l2thymosin, beta 10 like 2107871166678711911Rat
40957969LOC120095281uncharacterized LOC120095281107878300378789419Rat
1309957Utp18UTP18 small subunit processome component107881187978839338Rat
1592427Mbtd1mbt domain containing 1107883914078895413Rat
619877Nme2NME/NM23 nucleoside diphosphate kinase 2107889809778903514Rat
70497Nme1NME/NM23 nucleoside diphosphate kinase 1107890703678929659Rat
41393922Ebln1endogenous Bornavirus like nucleoprotein 1107893864578940651Rat
1311289Spag9sperm associated antigen 9107894343979077797Rat
41098788LOC120095280uncharacterized LOC120095280107909155879095803Rat
7607460LOC102555690uncharacterized LOC102555690107910421779113309Rat
621126Tob1transducer of ErbB-2.1107916309379165131Rat
1305361Wfikkn2WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2107918556379191657Rat
41070601Ankrd40clANKRD40 C-terminal like107922779179236365Rat
1307981Luc7l3LUC7-like 3 pre-mRNA splicing factor107924005079276555Rat
1594678Ankrd40ankyrin repeat domain 40107928207579295322Rat
71101Abcc3ATP binding cassette subfamily C member 3107929668179342749Rat
68942Cacna1gcalcium voltage-gated channel subunit alpha1 G107935499879422960Rat
735087Spata20spermatogenesis associated 20107942752579435472Rat
1306416Epn3epsin 3107943897879449516Rat
1359123MycbpapMycbp associated protein107945031979470977Rat
11358390LOC108352211uncharacterized LOC108352211107946736679474311Rat
1592414Rsad1radical S-adenosyl methionine domain containing 1107948525379499616Rat
1562656Acsf2acyl-CoA synthetase family member 2107950451079546714Rat
2336Chadchondroadherin107951217079515941Rat
7497167LOC102555790uncharacterized LOC102555790107955293479561494Rat
1305092Lrrc59leucine rich repeat containing 59107957229579586953Rat
1309067Eme1essential meiotic structure-specific endonuclease 1107958671879595515Rat
1309090Mrpl27mitochondrial ribosomal protein L27107959545979601242Rat
619765Xylt2xylosyltransferase 2107960591079619482Rat
2321564LOC100364194transmembrane protein 92-like107970720379710867Rat
9447800LOC103693451transmembrane protein 92-like107973941479743041Rat
1593405Tmem92transmembrane protein 92107974924279760807Rat
9338508Tmem92-ps1transmembrane protein 92, pseudogene 1107976719279769848Rat
1563563Ppid-ps13peptidylprolyl isomerase D, pseudogene 13107980080779804238Rat
7694663LOC102556395uncharacterized LOC102556395107987220979881942Rat
61817Col1a1collagen type I alpha 1 chain107988362279900625Rat
1308062Sgcasarcoglycan, alpha107990469879922808Rat
1585185Hils1histone linker H1 domain, spermatid-specific 1107991352579914321Rat
7503661LOC102557019uncharacterized LOC102557019107991863579929063Rat
632281Ppp1r9bprotein phosphatase 1, regulatory subunit 9B107993805579954085Rat
1306138Samd14sterile alpha motif domain containing 14107995711179972347Rat
69428Pdk2pyruvate dehydrogenase kinase 2107997255079987074Rat
41049107LOC120095177uncharacterized LOC120095177107998469279986134Rat
1310333Itga3integrin subunit alpha 3107999016080022206Rat
7668130LOC102546327uncharacterized LOC102546327108002225980027875Rat
1304875Dlx3distal-less homeobox 3108006448980069891Rat
1308744Dlx4distal-less homeobox 4108008503780090434Rat
41396154LOC120095345uncharacterized LOC120095345108011400880148484Rat
628842Tac4tachykinin precursor 4108020782480216156Rat
727966Kat7lysine acetyltransferase 7108022151980255590Rat
7660262LOC102546598uncharacterized LOC102546598108025568080267072Rat
7735698LOC102546674uncharacterized LOC102546674108026445580281943Rat
1561062Fam117afamily with sequence similarity 117, member A108028141180325345Rat
727783Slc35b1solute carrier family 35, member B1108032792180335279Rat
41100182LOC120095178uncharacterized LOC120095178108035416680357816Rat
1311613Spopspeckle type BTB/POZ protein108035812180438983Rat
41236916LOC120095411small nucleolar RNA SNORA4108038067580380818Rat
620693Nxph3neurexophilin 3108045628380459949Rat
3177Ngfrnerve growth factor receptor108051528780533518Rat
3322Phb1prohibitin 1108060526880618043Rat
1566329Zfp652zinc finger protein 652108062655580706397Rat
41198723LOC120095179uncharacterized LOC120095179108063355380649436Rat
7503123LOC102547047uncharacterized LOC102547047108069506780762037Rat
1306182Phospho1phosphoethanolamine/phosphocholine phosphatase 1108076206280769596Rat
1311794Abi3ABI family, member 3108076981980780816Rat
1591007Gngt2G protein subunit gamma transducin 2108077600380784235Rat
11392345Trnaq-uug1transfer RNA glutamine (anticodon UUG) 1108079768580797756Rat
1592405B4galnt2beta-1,4-N-acetyl-galactosaminyl transferase 2108080159480828005Rat
1592404Rpl15-ps8ribosomal protein L15, pseudogene 8108083034580831058Rat
40954811LOC120095180uncharacterized LOC120095180108084565680859083Rat
708580Igf2bp1insulin-like growth factor 2 mRNA binding protein 1108090830080951097Rat
2709Gipgastric inhibitory polypeptide108096836080976506Rat
1310144Snf8SNF8 subunit of ESCRT-II108098433780996724Rat
2319914Psmg4-ps2proteasome assembly chaperone 4, pseudogene 2108098672680987180Rat
1308347Ube2zubiquitin-conjugating enzyme E2Z108099781681016936Rat
61933Atp5mc1ATP synthase membrane subunit c locus 1108102405681026780Rat
1559974Calcoco2calcium binding and coiled-coil domain 2108105546781069298Rat
1311922Ttll6tubulin tyrosine ligase like 6108108198581118009Rat
1309113Hoxb13homeo box B13108116049881162777Rat
41238789LOC120095283uncharacterized LOC120095283108121716181229312Rat
2325418Mir196a1microRNA 196a-1108123100681231085Rat
1306158Hoxb9homeo box B9108123731281240818Rat
1586211Hoxb8homeo box B8108124831381251261Rat
1559918Hoxb7homeo box B7108125261681256034Rat
10395317Hoxb5oshomeobox B5 and homeobox B6, opposite strand108125688081272747Rat
1562142Hoxb6homeo box B6108125872681267458Rat
1310780Hoxb3homeo box B3108125873981314134Rat
1562292Hoxb5homeo box B5108126937281271580Rat
2325601Mir10amicroRNA 10a108128317181283280Rat
1560113Hoxb4homeo box B4108128455281287134Rat
7568369LOC102550580uncharacterized LOC102550580108130931081317103Rat
2319509Hoxb2homeobox B2108131782881320220Rat
1310298Hoxb1homeo box B1108133150781332928Rat
41205404LOC120095284uncharacterized LOC120095284108135889981367940Rat
41353348LOC120095285uncharacterized LOC120095285108136191881367401Rat
708436Skap1src kinase associated phosphoprotein 1108142547281732651Rat
40987530LOC120095286uncharacterized LOC120095286108153147481538882Rat
7727790LOC102551165uncharacterized LOC102551165108153816281538800Rat
1307319Snx11sorting nexin 11108174202081752778Rat
1310714Cbx1chromobox 1108177030781789981Rat
1311972Nfe2l1NFE2 like bZIP transcription factor 1108179605581812926Rat
41013792LOC120095287uncharacterized LOC120095287108182181381824811Rat
1306948Copz2COPI coat complex subunit zeta 2108183244181845514Rat
2325564Mir152microRNA 152108183293681833020Rat
620002Cdk5rap3CDK5 regulatory subunit associated protein 3108189439381903581Rat
1592397Prr15lproline rich 15-like108191649181922454Rat
621456Pnpopyridoxamine 5'-phosphate oxidase108192458481930844Rat
7723636LOC102547955uncharacterized LOC102547955108193091281953864Rat
1592078Sp2Sp2 transcription factor108194058081970040Rat
11383214LOC108352124uncharacterized LOC108352124108197872381985346Rat
1306768Sp6Sp6 transcription factor108200551882009699Rat
1307741Scrn2secernin 2108201660482020676Rat
1303311Lrrc46leucine rich repeat containing 46108202131482033575Rat
1588626Mrpl10mitochondrial ribosomal protein L10108202603182034451Rat
1309141Osbpl7oxysterol binding protein-like 7108203599582053566Rat
1308264Tbx21T-box transcription factor 21108208232282098831Rat
631328Tbkbp1TBK1 binding protein 1108212055882135749Rat
2909Kpnb1karyopherin subunit beta 1108214566282174437Rat
619962Npeppsaminopeptidase puromycin sensitive108219145482273967Rat
1304913Mrpl45mitochondrial ribosomal protein L45108230865082320474Rat
1560033Gpr179G protein-coupled receptor 179108232456882340448Rat
11433460LOC108352126dual specificity protein phosphatase 26 pseudogene108234532582347303Rat
1307720Socs7suppressor of cytokine signaling 7108235215982388829Rat
1309742Arhgap23Rho GTPase activating protein 23108243757882496846Rat
708439Srcin1SRC kinase signaling inhibitor 1108250291182569882Rat
7703088LOC102548331uncharacterized LOC102548331108259315082599885Rat
1587434Epopelongin BC and polycomb repressive complex 2 associated protein108262439282625912Rat
1306689Mllt6MLLT6, PHD finger containing108265725882678899Rat
41163674LOC120095289uncharacterized LOC120095289108265989682662527Rat
1559720Cisd3CDGSH iron sulfur domain 3108267934582682376Rat
1305097Pcgf2polycomb group ring finger 2108268256382694563Rat
11466692Trnan-guu10transfer RNA asparagine (anticodon GUU) 10108269643082696503Rat
61875Psmb3proteasome 20S subunit beta 3108269742582704521Rat
41114130Trnat-agu11transfer RNA threonine (anticodon AGU) 11108270538282705462Rat
621710Pip4k2bphosphatidylinositol-5-phosphate 4-kinase type 2 beta108270601682734938Rat
1305258Cwc25CWC25 spliceosome-associated protein homolog108273569882760373Rat
11391314Trnac-gca33transfer RNA cysteine (anticodon GCA) 33108276266482762735Rat
1587402Spmap1sperm microtubule associated protein 1108276396982768587Rat
62067Rpl23ribosomal protein L23108277187882775840Rat
41325536Snora21small nucleolar RNA, H/ACA box 21108277511482775249Rat
11376555Trnac-gca34transfer RNA cysteine (anticodon GCA) 34108279267082792741Rat
11383644Trnac-gca35transfer RNA cysteine (anticodon GCA) 35108279438982794460Rat
68408Lasp1LIM and SH3 protein 1108279517782835659Rat
1559709Fbxo47F-box protein 47108284951482880337Rat
41197673LOC120095381U7 small nuclear RNA108286421882864279Rat
1307496Plxdc1plexin domain containing 1108292249982982124Rat
11443179Trnac-gca36transfer RNA cysteine (anticodon GCA) 36108298388482983955Rat
11411023Trnac-gca37transfer RNA cysteine (anticodon GCA) 37108298455682984627Rat
1563128Arl5cARF like GTPase 5C108298521382993425Rat
68382Cacnb1calcium voltage-gated channel auxiliary subunit beta 1108299818283018838Rat
621183Rpl19ribosomal protein L19108302250383026030Rat
1305548Stac2SH3 and cysteine rich domain 2108303241883048260Rat
7722794LOC102548674uncharacterized LOC102548674108306620983076178Rat
621722Fbxl20F-box and leucine-rich repeat protein 20108308056883143680Rat
1559552Med1mediator complex subunit 1108314553883189260Rat
621111Cdk12cyclin-dependent kinase 12108320117783256906Rat
3166Neurod2neuronal differentiation 2108332380183327986Rat
621859Ppp1r1bprotein phosphatase 1, regulatory (inhibitor) subunit 1B108334773183356775Rat
1549768Stard3StAR-related lipid transfer domain containing 3108335732983379873Rat
1592387Tcaptitin-cap108338171983382887Rat
3361Pnmtphenylethanolamine-N-methyltransferase108338301983386557Rat
1592386Pgap3post-GPI attachment to proteins phospholipase 3108338711383399357Rat
2561Erbb2erb-b2 receptor tyrosine kinase 2108341119783435078Rat
41100961LOC120095358U6 spliceosomal RNA108342161083421716Rat
1306682Mien1migration and invasion enhancer 1108343519883436491Rat
619759Grb7growth factor receptor bound protein 7108344338783453057Rat
1307024Ikzf3IKAROS family zinc finger 3108346056483553591Rat
40975049LOC120095482U2 spliceosomal RNA108347428283474471Rat
41161284LOC120095504U6 spliceosomal RNA108355069483550800Rat
1549726Zpbp2zona pellucida binding protein 2108355877283567511Rat
1560577Ormdl3ORMDL sphingolipid biosynthesis regulator 3108359005283596035Rat
1563281Lrrc3cleucine rich repeat containing 3C108360879783610128Rat
1592062Gsdmagasdermin A108361433683639543Rat
1311470Psmd3proteasome 26S subunit, non-ATPase 3108364347383655620Rat
2426Csf3colony stimulating factor 3108366078783664569Rat
1564565Med24mediator complex subunit 24108366460983702315Rat
41094310Snord124small nucleolar RNA, C/D box 124108367118183671284Rat
3857Thrathyroid hormone receptor alpha108370188583729408Rat
628827Nr1d1nuclear receptor subfamily 1, group D, member 1108372834883735562Rat
11485617LOC108352130uncharacterized LOC108352130108374739783750366Rat
1564778Msl1MSL complex subunit 1108375538083767147Rat
628766Casc3CASC3 exon junction complex subunit108376901483788966Rat
1563269Rapgefl1Rap guanine nucleotide exchange factor like 1108379371183810373Rat
1561080Wipf2WAS/WASL interacting protein family, member 2108382106783861634Rat
41279133LOC120095376U6 spliceosomal RNA108382678483826885Rat
1309157Cdc6cell division cycle 6108386418983878011Rat
3534Rararetinoic acid receptor, alpha108388349083928932Rat
41087529LOC120095181uncharacterized LOC120095181108390560383914133Rat
1308942Gjd3gap junction protein, delta 3108393369483935759Rat
62048Top2aDNA topoisomerase II alpha108394573183976874Rat
2875Igfbp4insulin-like growth factor binding protein 4108399525384007272Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10662D10Wox23258108097644580976703Ratregion
10980D10Wox16125108051612580516250Ratregion
10981D10Arb21199108051614780516346Ratregion
10982D10Mit13165108051613480516299Ratregion
34274D10Mgh5223108256485682565079Ratregion
34695D10Mgh15103108340002583400128Ratregion
34718D10Mgh23231107889965578899805Ratregion
34718D10Mgh23231107889965578899894Ratregion
36073D10Rat22185108065573780655922Ratregion
36131D10Rat269144107555456175554705Ratregion
36364D10Mit20247108129073481290981Ratregion
37460D10Rat93223107821039978210622Ratregion
35503D10Rat20123108067600080676123Ratregion
35513D10Rat24166107563188775632053Ratregion
35563D10Rat21133107981378979813922Ratregion
36878D10Rat219137107830688078307017Ratregion
37894D10Rat114156107895264378952799Ratregion
37900D10Rat124205108170978881709989Ratregion
37996D10Rat127220108346311483463334Ratregion
36749D10Rat19135108346785383467988Ratregion
39800D10Rat150202107839038778390589Ratregion
38314D10Rat128182108118946381189735Ratregion
38314D10Rat128182108118955381189735Ratregion
38342D10Rat92178107458584674586024Ratregion
38516D10Rat106235108171463081714865Ratregion
39976D10Rat151219107481482074815039Ratregion
40038D10Rat147125107958411979584264Ratregion
39166D10Rat107122107917290779173029Ratregion
39226D10Rat86165107877551678775681Ratregion
39538D10Rat191215108175463781754852Ratregion
41170D10Rat146263108007639080076653Ratregion
41328D10Rat148133108095664180956774Ratregion
40952D10Rat144148108253879082538938Ratregion
43612D3Got12221107843056678430787Ratregion
44775D10Got101211107467640974676620Ratregion
44776D10Got92148107437208474372232Ratregion
44778D10Got103248107539047475390722Ratregion
44779D10Got10798107512111775121215Ratregion
44781D10Got112127107624608576246212Ratregion
44782D10Got102115107581287375812988Ratregion
44783D10Got105227107857959778579824Ratregion
44784D10Got108171107908615679086329Ratregion
44785D10Got106122107838392478384046Ratregion
44787D10Got109198107924695279247150Ratregion
44790D10Got111260108030554780305807Ratregion
44792D10Got115225108068111980681344Ratregion
44794D10Got114204108146083181461035Ratregion
44795D10Got113221108097643980976660Ratregion
44797D10Got116154108067597180676125Ratregion
44798D10Got120169108212949482129663Ratregion
44799D10Got119223108191835181918574Ratregion
44802D10Got128244108300442583004668Ratregion
44803D10Got126167108333719983337366Ratregion
44804D10Got125250108321282883213078Ratregion
44805D10Got129151108307164383071794Ratregion
44806D10Got130134108372358783723721Ratregion
629588D10Hmgc1187108051612480516311Ratregion
59968D10Got122222108301691483017138Ratregion
66396D10Mco31254108053697480537228Ratregion
66397D10Mco32191108256305882563249Ratregion
66398D10Mco34141108339968383399824Ratregion
66399D10Mco35390108205789882058275Ratregion
66400D10Mco36341108205377782054118Ratregion
66401D10Mco37204108205572182055925Ratregion
66404D10Mco41271108205724482057515Ratregion
66499D10Mco66208107846298478463164Ratregion
67317D10Arb10200108341096483411164Ratregion
67339D10Arb31314108051602180516335Ratregion
1578817D10Chm112177107507480175074978Ratregion
1578820D10Chm117272107764676577647037Ratregion
1578854D10Chm104184107473665174736835Ratregion
1578863D10Chm111243107528932275289559Ratregion
1630261D10Got228266108349251683492782Ratregion
1630856D10Got246299107730248177302780Ratregion
1578912D10Chm108235107507474375074978Ratregion
1578926D10Chm101245107498657474986819Ratregion
1578938D10Chm92228107525918875259416Ratregion
1578952D10Chm103250107513389675134148Ratregion
1578957D10Chm110226107525078975251017Ratregion
1578979D10Chm98219107484085874841077Ratregion
1579001D10Chm102183107508277875082963Ratregion
1579005D10Chm97196107481378074813976Ratregion
1579028D10Chm119235107669796776698202Ratregion
1579037D10Chm93249107527648775276736Ratregion
1579040D10Chm107250107478513774785387Ratregion
1579058D10Chm114159107510283075102989Ratregion
1579060D10Chm52235108128653081286765Ratregion
1579074D10Chm99236107488118374881419Ratregion
1579078D10Chm106211107477293874773149Ratregion
1579098D10Chm96250107475628574756535Ratregion
1579117D10Chm113246107509467675094922Ratregion
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1579132D10Chm143233107804156678041799Ratregion
1579152D10Chm95250107516361875163868Ratregion
1579153D10Chm105215107475877274758987Ratregion
1579187D10Chm53249108129073281290981Ratregion
1627416D10Mco33189108256580082565989Ratregion
1627430Pdk2261107997280779973068Ratregion
1639543D10Got408163107611837876118541Ratregion
1641025D10Got215147107687498976875136Ratregion
1635258D10Wox38291108399132783991618Ratregion
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1634171D10Wox29190108341097283411162Ratregion
1634227D10Wox53165107936154379361708Ratregion
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5036101Cbx1176108178546181785638Ratregion
5036282Erbb2100108343350283433602Ratregion
5036320Gngt2555108078352280784077Ratregion
5036348Hoxb11337108133203681333373Ratregion
5039042RH127479192108268214282682334Ratregion
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5033929RH140651619107904488179045500Ratregion
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5026240RH131452211107515437075154581Ratregion
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5026416RH132128183108328054483280727Ratregion
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5034375WI-7705334107515670775157041Ratregion
5029109RH143556286108269392182694207Ratregion
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5032551D17S2026171108277193582772195Ratregion
5032647RH134777194108201070282010896Ratregion
5027435AW212678115108180051781800632Ratregion
5027437AW547152221108366498183665203Ratregion
5027439AI64652886108325419183254277Ratregion
5025092AW55414296107889460278894698Ratregion
502787318.MMHAP86FRF9.seq156107812137078121526Ratregion
5033239RH138099223108178066381780886Ratregion
5030611BF398302198107888554378885741Ratregion
5033393RH138674240108194039281940632Ratregion
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5058050BE101888181108063359180633772Ratregion
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7193136THRA243108372150983722496Ratregion
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5047058RH132110161108250451182504672Ratregion
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7192198Hoxb6105108126716481267269Ratregion
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5063012BI295735185108315088583151070Ratregion
5063070BI289288173108376483483765007Ratregion
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5066286PMC137013P2203108002891180029114Ratregion
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5086977BQ193432185108329714983297334Ratregion
5087030AA818722196108032502780325223Ratregion
5087072BM387797150108363793183638081Ratregion
5087096BQ208348162107910179679101958Ratregion
5087510PMC213492P1303108208355582083858Ratregion
5086477AA955814151108268364382683794Ratregion
5082723BG373921142107909558179095723Ratregion
5087494PMC207566P6215108397676783976982Ratregion
5087528PMC275467P3261107988305779883318Ratregion
5087885PMC26408P2763108097434080975103Ratregion
5087939Hoxb6128108126716781267295Ratregion
5088014PMC26408P1160108052396880524128Ratregion
5083451BI282209199108102411281024585Ratregion
5083595BI27637090108090811780908207Ratregion
5081671BE117971166108131289481313060Ratregion
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5087554PMC312758P3120107890332478903444Ratregion
5084968AI10444690107907506679075156Ratregion
5087937Hoxb3404108131051281310916Ratregion
5082231BI280897168108363863383638801Ratregion
5081000RH141906200108070609880706298Ratregion
5090523AU049802200107460808474608284Ratregion
5081338UniSTS:225862162108126720481267366Ratregion
5085651BQ203205171108116306981163240Ratregion
5090057AU049524187108221657482216763Ratregion
5084532AI013877174108007304780073221Ratregion
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5083751AI231151198107530581875306016Ratregion
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5502866Dlx3621108006806980068691Ratregion
5503101CACNB1492108300195783002450Ratregion
5503390SSO4H11183108102416081024617Ratregion
5503587UniSTS:464682121108051730680517427Ratregion
5503682EME1__7583666107958669979587365Ratregion
5504612PMC316377P9213108390567283905885Ratregion
5504710PMC64989P2255108372473883724993Ratregion
5504764PMC87157P2830108372397983724810Ratregion
5504778PMC99823P1341108006795580068296Ratregion
5504632PMC316809P1674108366249283663166Ratregion
5505724UniSTS:490630837108393413483934971Ratregion
5506459GDB:3755021419107584471375845132Ratregion
5506559NEUROD2_1374819108332480083325619Ratregion
5506616NR1D1_2626691108372816383728854Ratregion
5506706G38056199108128265581282854Ratregion
5506626THRA_2263757108372858283729339Ratregion
5507205UniSTS:225255178108214633082146508Ratregion
5499571AI987680494108077025680770750Ratregion
5499681G73122763108300647583007239Ratregion
5500949MARC_9787-9788:996688611:1683108041697280417655Ratregion
5501009PMC117285P1922108133179081332712Ratregion
5501630UniSTS:265259350108127155081271900Ratregion
5502182MARC_7915-7916:996688163:1687107997350079974187Ratregion
5502748COL1A1265107989533679895601Ratregion
5500573RH136041193108181204481812237Ratregion
5500743RH65642710108189858981899299Ratregion
5500853GDB:45852791406108231961482321020Ratregion
5501015PMC122806P1618108208571182086329Ratregion
5503486GRB7_4323464108345255883453022Ratregion
5501468D17S1644E71108372925383729324Ratregion
5504434PMC20354P1597108008600680086603Ratregion
5504791UniSTS:2741841463108180281981804282Ratregion
5501369STS-H47054129108214755282148946Ratregion
5501880MARC_16741-16742:1020435796:1690107946199379462683Ratregion
5502046MARC_26124-26125:1030369359:1101108372418983724774Ratregion
5506187UniSTS:498743790108091239080913180Ratregion
5502144MARC_5497-5498:996690469:1740108372879983729539Ratregion
5502523RH125185171108372837783728548Ratregion
5502851Car10724107855521878555942Ratregion
152025223rs1072349410107508566475085664Ratregion
Position Markers

Flank 1: (D10Got92)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21074,372,084 - 74,372,232 (+)MAPPER
Rnor_6.01077,055,741 - 77,055,888NCBI
Rnor_5.01076,919,480 - 76,919,627UniSTS
RGSC_v3.41077,956,240 - 77,956,387UniSTS
RGSC_v3.41077,956,239 - 77,956,387RGD
RGSC_v3.11077,970,610 - 77,970,757RGD
Celera1073,270,689 - 73,270,836UniSTS
RH 3.4 Map10682.49UniSTS
RH 3.4 Map10682.49RGD
RH 2.0 Map10787.2RGD
Flank 2: (Igfbp4)
Rat AssemblyChrPosition (strand)Source
GRCr81084,491,471 - 84,503,487 (+)NCBI
mRatBN7.21083,995,253 - 84,007,272 (+)NCBI
mRatBN7.2 Ensembl1083,989,591 - 84,007,225 (+)Ensembl
UTH_Rnor_SHR_Utx1088,939,170 - 88,951,179 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01088,437,283 - 88,449,292 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01083,829,446 - 83,841,461 (+)NCBI
Rnor_6.01086,950,555 - 86,962,563 (+)NCBI
Rnor_6.0 Ensembl1086,950,557 - 86,962,578 (+)Ensembl
Rnor_5.01086,747,476 - 86,759,484 (+)NCBI
RGSC_v3.41087,822,429 - 87,834,315 (+)NCBI
RGSC_v3.11087,836,798 - 87,848,684 (+)NCBI
Celera1082,736,335 - 82,748,330 (+)NCBI
RH 3.4 Map10860.1RGD
Cytogenetic Map10q31NCBI


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2289982Bp303Blood pressure QTL 303arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)107345299275632053Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
724516Uae17Urinary albumin excretion QTL 173.6urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)107821062285220348Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
724555Bp150Blood pressure QTL 1500.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107345299278210622Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106592723382565079Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
2325836Bp346Blood pressure QTL 3460.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608584007272Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
12880053Cm104Cardiac mass QTL 1040.009heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107345299283463334Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108400727295933025Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)107437208484007272Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1064890616107211142Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108400727295933025Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)107981378985160854Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 7 gender: male 1599557
qtl_general also affects heart right ventricle mass and blood pressure, but not heart left ventricle mass, body mass or kidney mass 1599557
qtl_statistics_details software package used: ANOVA followed by Dunnett test in the SYSTAT 9 program 1599557
qtl_trait_method measurement method: selected males were weaned at 21 days of age then fed 2% NaCl diet starting from 35 days of age, at 14 weeks animals were decapitated, organs removed, blotted and weighed 1599557
qtl_trait_method aorta section was from the diaphragm to the first intercostal artery 1599557