Bp399 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: Bp399 (Blood pressure QTL 399) Rattus norvegicus

Symbol: Bp399
Name: Blood pressure QTL 399
RGD ID: 12879472
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,228,358 - 47,841,255RGD_MAPPER_PIPELINE
Rnor_6.01350,609,228 - 53,264,877RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01355,662,705 - 58,314,767RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41346,721,037 - 49,428,577RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SS.BN-(D13Rat124-D13Rat101)/Mcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3862Timm17atranslocase of inner mitochondrial membrane 17A135212464152136127Rat
70983Cacna1scalcium voltage-gated channel subunit alpha1 S135288957052964558Rat
620055Ppfia4PTPRF interacting protein alpha 4135113483151183321Rat
3882Tnnt2troponin T2, cardiac type135266297452680992Rat
2048Adora1adenosine A1 receptor135104211151076913Rat
62053Csrp1cysteine and glycine-rich protein 1135255384352575054Rat
620287Mybphmyosin binding protein H135103422851041903Rat
621123Ptprvprotein tyrosine phosphatase, receptor type, V135193523951956262Rat
628835Gpr37l1G protein-coupled receptor 37-like 1135198569851992547Rat
3804Syt2synaptotagmin 2135156924851577824Rat
708516Ptpn7protein tyrosine phosphatase, non-receptor type 7135195802351971431Rat
628717Klhl12kelch-like family member 12135128093351314753Rat
621137Rnpeparginyl aminopeptidase135209286352124006Rat
620432Myogmyogenin135112645951129048Rat
621765Tnni1troponin I1, slow skeletal type135262485652637297Rat
1304916Optcopticin135073550950748908Rat
620874Chi3l1chitinase 3 like 1135102284451030797Rat
620226Prelpproline and arginine rich end leucine rich repeat protein135074952650773934Rat
1307236Lmod1leiomodin 1135214709952189835Rat
1306084Cyb5r1cytochrome b5 reductase 1135122969751236447Rat
2225Btg2BTG anti-proliferation factor 2135091318550916944Rat
1305646Chit1chitinase 1135094702050994644Rat
1306206Kif21bkinesin family member 21B135297650553026750Rat
1311611Gpr25G protein-coupled receptor 25135313581553139180Rat
1359351LOC289035similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco135121842851225602Rat
1310950Camsap2calmodulin regulated spectrin-associated protein family, member 2135314571253225349Rat
1310816Ube2tubiquitin-conjugating enzyme E2T135179087751801379Rat
1312041Shisa4shisa family member 4135219398952197205Rat
1309287Ppp1r12bprotein phosphatase 1, regulatory subunit 12B135158360351784641Rat
1310687Elf3E74 like ETS transcription factor 3135208387352088798Rat
1310652Lad1ladinin 1135264525752659619Rat
1310537Ipo9importin 9135220338452256196Rat
1307922Tmem9transmembrane protein 9135285403152871300Rat
1309892Tmem183atransmembrane protein 183A135118464751201401Rat
1307472Pkp1plakophilin 1135270517452753089Rat
1303151Adipor1adiponectin receptor 1135124047051260233Rat
1565602Kdm5blysine demethylase 5B135138437151455392Rat
1565940Arl8aADP-ribosylation factor like GTPase 8A135197297451981976Rat
1359331RabifRAB interacting factor135131747651330536Rat
1310502Phlda3pleckstrin homology-like domain, family A, member 3135258891752592002Rat
1561854Ascl5achaete-scute family bHLH transcription factor 5135288705552888603Rat
1308112Mgat4eMGAT4 family, member E135136480351382702Rat
1311892Inavainnate immunity activator135308843853108713Rat
1560339Lgr6leucine-rich repeat-containing G protein-coupled receptor 6135181190451931193Rat
1583292Ndufv3-ps1NADH dehydrogenase (ubiquinone) flavoprotein 3, pseudogene 1135129722351297656Rat
1562634LOC498236LRRGT00186135303059653087386Rat
1565384Igfn1immunoglobulin-like and fibronectin type III domain containing 1135279118852823037Rat
1590261Nav1neuron navigator 1135226047452515016Rat
1589074LOC685812similar to ribosomal protein L11135259763552603205Rat
1592636LOC685511similar to 40S ribosomal protein S7 (S8)135133235851333002Rat
619769Fmodfibromodulin135087488650885503Rat
7514622LOC102557118uncharacterized LOC102557118135076145250764851Rat
7528970LOC102553722uncharacterized LOC102553722135251268752518742Rat
7539150LOC102553639uncharacterized LOC102553639135225968552266982Rat
7646811LOC102555007immunoglobulin-like and fibronectin type III domain-containing protein 1-like135282092852823299Rat
7633688LOC102552406uncharacterized LOC102552406135100866951018293Rat
7562072LOC102552665uncharacterized LOC102552665135122507451228447Rat
7586102LOC102553951uncharacterized LOC102553951135235962852367485Rat
7737183LOC102553256ubiquitin-conjugating enzyme E2 C-like135162212251624147Rat
9213668LOC103691912uncharacterized LOC103691912135138129951382848Rat
9078385Lnc134long non-coding RNA 134135127594751280865Rat
9201554LOC103691904uncharacterized LOC103691904135090922350911243Rat
9215774LOC103691910uncharacterized LOC103691910135137113951372927Rat
9270250LOC103691905uncharacterized LOC103691905135112007951122225Rat
9333559LOC10369192228S ribosomal protein L42, mitochondrial135306744053067949Rat
9252026LOC103691921uncharacterized LOC103691921135257610952584807Rat
11467019LOC108352535uncharacterized LOC108352535135135246951355487Rat
11459163LOC108352537uncharacterized LOC108352537135258737652589240Rat
11506008LOC108352536uncharacterized LOC108352536135246087252467679Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
40688D13Rat124236135060922850609459Ratregion
5054163RH143066157135061540850615564Ratregion
5030715BE107718154135063559350635746Ratregion
45052D13Got26186135065358950653772Ratregion
33935D13Mit8206135067699950677204Ratregion
5506793G45403176135069480150694976Ratregion
60037D13Got28139135074396350744121Ratregion
5046874RH132004187135074957750749763Ratregion
38240D13Rat91172135079947850799665Ratregion
5064976BI302954171135081480450814974Ratregion
5501071PMC133870P1417135087760850878024Ratregion
41146D13Rat125235135087919150879437Ratregion
5053087RH142446178135088507250885249Ratregion
5049302RH133402188135088513550885322Ratregion
6480492D13Hmgc10178135089609150896268Ratregion
128794684110178135089609150896268Ratregion
12859027rs1981993230135089796450897964Ratregion
5087297AA819837150135091508750915236Ratregion
5501223PMC156147P1293135091522550915317Ratregion
12832756rs1069358350135091800950918009Ratregion
5064196BI296337241135092217550922415Ratregion
60759D13Wox3277135097447550974751Ratregion
5085112AW531798205135099440850994612Ratregion
6480500D13Hmgc56200135102359151023790Ratregion
5062384BE106626190135102498351025172Ratregion
5052929RH142356151135103056951030719Ratregion
5046860RH131996213135103998551040197Ratregion
5081909BE118735193135104000551040197Ratregion
5040728RH128449192135104106651041760Ratregion
5051623BB17643199135104292551043023Ratregion
5087686UniSTS:141040179135104367151043849Ratregion
1642153D13Hmgc03237135107008351070319Ratregion
1642161D13Hmgc30205135108098951081193Ratregion
36069D13Rat23166135108437451084530Ratregion
66668D13Mco10221135111994651120164Ratregion
5035825PMC207566P7210135112628751126496Ratregion
7192896Myog185135112649351126677Ratregion
5499719UniSTS:234220327135112652851126854Ratregion
5501077PMC133893P1952135112663351127584Ratregion
5037209UniSTS:205458273135112665451126926Ratregion
5503554UniSTS:463953674135112690851127581Ratregion
7192892Myog114135112890451129017Ratregion
5028384AI448359217135113645151136667Ratregion
5037217RH127096243135113650951136751Ratregion
1582024D13Hmgc23201135118192251182122Ratregion
5064776BF405092167135118230651182472Ratregion
5084686AI23623191135123635451236444Ratregion
5027131RH16184119135125943451259552Ratregion
5057458AA858656200135125972851259927Ratregion
5042524RH129486184135129724151297424Ratregion
5043198RH129888197135129727551297471Ratregion
5073082RH137226207135131441151314617Ratregion
5068750AU046955113135132740451327514Ratregion
5033599RH139414122135133009651330217Ratregion
5026594RH132810188135133107551331262Ratregion
5058138BF386676175135138221451382388Ratregion
66517D13Mco9270135140737451407636Ratregion
5048280RH132812205135145503251455236Ratregion
5060506BE110239199135147729051477488Ratregion
45053D13Got30231135151369351513933Ratregion
11375D13Arb8194135157683851577031Ratregion
5057996BF386425150135159226251592411Ratregion
5082991BF390593171135164091951641089Ratregion
5067006AU048021295135173662551736915Ratregion
5075048RH138368172135176993851770109Ratregion
5045226RH131056182135180102551801206Ratregion
5086388BQ204841157135180210751802263Ratregion
5047038RH132098180135181199551812174Ratregion
5074618RH138120135135181716251817296Ratregion
5034371RH64613118135182647551826592Ratregion
42992D13Rat176216135191782951918037Ratregion
502795341.MMHAP33FRF11.seq178135193179651931973Ratregion
5030403BE112734174135197026451970437Ratregion
5065270BE121320160135197207551972234Ratregion
5071900RH135350196135197608751976282Ratregion
5072996RH137174187135198164451981830Ratregion
5085934AA866326212135208401452084225Ratregion
5028807RH142402199135208431352084511Ratregion
5058122BF386633197135209704852097244Ratregion
1582092D13Hmgc24118135209949652099613Ratregion
5029969BF400237181135210353952103719Ratregion
5055845RH144035137135212151052121646Ratregion
5070856RH134745186135212254052122725Ratregion
5039582RH127788184135212473052124913Ratregion
5500661RH136499209135212481252125020Ratregion
1642080D13Hmgc62209135213352652133734Ratregion
5032823RH135433197135218812252188318Ratregion
5065424BF412011190135219022352190412Ratregion
5054559RH143294224135219326352193486Ratregion
5077176RH139606220135220340552203624Ratregion
5076922RH139456221135220351152203731Ratregion
5070610RH134601206135226072752260932Ratregion
45051D13Got31253135226847152268723Ratregion
5051791RH94660135135257430652574441Ratregion
5066266PMC130177P2402135257462452575025Ratregion
5039688RH127850216135257465252574867Ratregion
5042284RH129346228135257474752574974Ratregion
35601D13Rat24165135257667452576838Ratregion
5049044RH133254214135259174752591960Ratregion
1632942D13Wox16240135262344652623685Ratregion
5502819TNNI1208135263498752635976Ratregion
5049170RH133325206135263595652637059Ratregion
5053031RH142414209135263704152637249Ratregion
5073556RH137504226135263704552637270Ratregion
5080632RH141692199135265937252659570Ratregion
5041196RH128717180135266564752665826Ratregion
5054505RH143263233135267119652671428Ratregion
11433D13Mgh15338135267830252678826Ratregion
5026150RH131106180135268009752680827Ratregion
5082885BF390334150135279124252791391Ratregion
5028204D1Mit103102135282444652824547Ratregion
5039966RH128011215135287093752871151Ratregion
5028699RH7104077135292165652921732Ratregion
5026508RH132481192135296410252964293Ratregion
5067316AU047830217135299858752998806Ratregion
5046126RH131573154135302655453026707Ratregion
5040028RH128048217135306770353067919Ratregion
5075070RH138381243135308849453088736Ratregion
5074530RH138070130135309719253097321Ratregion
5051138RH134461195135314586553146059Ratregion
5087006BF389061157135315274753152903Ratregion
60042D13Got37251135320121353201461Ratregion
37314D13Rat101162135326469853264877Ratregion
Position Markers

Flank 1: (D13Rat124)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,228,358 - 45,228,590 (+)MAPPER
Rnor_6.01350,609,228 - 50,609,459NCBI
Rnor_5.01355,662,705 - 55,662,936UniSTS
RGSC_v3.41346,721,038 - 46,721,269UniSTS
RGSC_v3.41346,721,037 - 46,721,269RGD
RGSC_v3.11346,735,081 - 46,735,312RGD
Celera1345,558,778 - 45,559,009UniSTS
RH 3.4 Map13174.1RGD
RH 3.4 Map13174.1UniSTS
RH 2.0 Map13377.4RGD
SHRSP x BN Map1314.7498RGD
Flank 2: (D13Rat101)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21347,841,075 - 47,841,255 (+)MAPPER
Rnor_6.01353,264,698 - 53,264,877NCBI
Rnor_5.01358,314,588 - 58,314,767UniSTS
RGSC_v3.41349,428,397 - 49,428,577RGD
RGSC_v3.41349,428,398 - 49,428,577UniSTS
RGSC_v3.11349,442,478 - 49,442,657RGD
Celera1348,152,996 - 48,153,175UniSTS
RH 3.4 Map13148.8UniSTS
RH 3.4 Map13148.8RGD
FHH x ACI Map1319.33UniSTS
FHH x ACI Map1319.33RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131107975663Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1312193394108478121Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131409633059096330Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131409633059096330Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131444158250799665Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131444158251577031Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131981081464810814Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)132005247765052477Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132148248158537177Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1324502279108770533Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132800833873008338Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132858445273584452Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132907693474076934Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132907693474076934Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1335301263107975663Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133614753364868393Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133614753399968921Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133734634882346348Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133937292784372927Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133950130093652524Rat
4889861Pur29Proteinuria QTL 2913.80.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)134231074486833540Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)134231074487310744Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)134250834587508345Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)134250834587508345Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134357571788575717Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134567662990676629Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134644457050799665Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134877665553264877Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134905850767207219Rat
12879436Bp395Blood pressure QTL 395arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134999470851081193Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135026035750897964Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135060922853264877Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135089609150918009Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135108098996080989Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135156924896569248Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)135157782490675199Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general software used: statistics - Sigma Plot 11.0 12802368
qtl_trait Brown Norway alleles attenuate hypertension and reduce albuminuria in females (both sexes used) 12802368
qtl_trait_method measurement method: mean arterial pressure was measured in congenic strains after 21 days of 8% NaCl diet. Albumin excretion was measured after 17 days of 8% NaCl diet 12802368