Bp397 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bp397 (Blood pressure QTL 397) Rattus norvegicus

Symbol: Bp397
Name: Blood pressure QTL 397
RGD ID: 12879444
Also known as: Line9BP3
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,049,404 - 90,049,404RGD_MAPPER_PIPELINE
Rnor_6.01350,260,357 - 50,897,964RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01355,314,020 - 55,951,501RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41346,520,126 - 47,010,821RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SS.BN-(D13Rat25-rs198199323)/Mcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Fmod is a candidate Gene for Bp397
Prelp is a candidate Gene for Bp397

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain

References

References - curated
1. Hoffman MJ, etal., Hypertension. 2013 Sep;62(3):557-63. doi: 10.1161/HYPERTENSIONAHA.113.01708. Epub 2013 Jul 1.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
727850Kiss1KiSS-1 metastasis-suppressor135052950650537603Rat
1304916Optcopticin135073550950748908Rat
620226Prelpproline and arginine rich end leucine rich repeat protein135074952650773934Rat
3554Renrenin135050272450513953Rat
1305304Etnk2ethanolamine kinase 2135048117850498991Rat
1309674Sox13SRY-box transcription factor 13135043470250479118Rat
1561566LOC498231LRRGT00144135024247850261438Rat
1566310Golt1agolgi transport 1A135053211650550029Rat
1564395Plekha6pleckstrin homology domain containing A6135055545450582236Rat
619769Fmodfibromodulin135087488650885503Rat
7501983LOC102550525uncharacterized LOC102550525135050768550509232Rat
7514622LOC102557118uncharacterized LOC102557118135076145250764851Rat
9461626LOC103692077uncharacterized LOC103692077135037175850380755Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
36884D13Rat25166135026035750260531Ratregion
5065038BE108977156135046032250460477Ratregion
5040296RH128202212135048127650481487Ratregion
5075090RH138392176135050279850502973Ratregion
11232D13Arb7317135050780550508121Ratregion
5070161RH94507185135051413150514320Ratregion
5081491AA998833156135053729450537450Ratregion
5051286RH134546185135055549450555678Ratregion
5080680RH141720211135055769950557909Ratregion
1627537D13Sunn1090243135059574150595983Ratregion
40688D13Rat124236135060922850609459Ratregion
5054163RH143066157135061540850615564Ratregion
5030715BE107718154135063559350635746Ratregion
45052D13Got26186135065358950653772Ratregion
33935D13Mit8206135067699950677204Ratregion
5506793G45403176135069480150694976Ratregion
60037D13Got28139135074396350744121Ratregion
5046874RH132004187135074957750749763Ratregion
38240D13Rat91172135079947850799665Ratregion
5064976BI302954171135081480450814974Ratregion
5501071PMC133870P1417135087760850878024Ratregion
41146D13Rat125235135087919150879437Ratregion
5053087RH142446178135088507250885249Ratregion
5049302RH133402188135088513550885322Ratregion
6480492D13Hmgc10178135089609150896268Ratregion
128794684110178135089609150896268Ratregion
12859027rs1981993230135089796450897964Ratregion
Position Markers

Flank 1: (D13Rat25)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,049,404 - 45,049,579 (-)MAPPER
Rnor_6.01350,260,357 - 50,260,531NCBI
Rnor_5.01355,314,020 - 55,314,194UniSTS
RGSC_v3.41346,520,765 - 46,520,939UniSTS
RGSC_v3.41346,520,127 - 46,520,301UniSTS
RGSC_v3.41346,520,764 - 46,520,939RGD
RGSC_v3.41346,520,126 - 46,520,301RGD
RGSC_v3.11346,534,808 - 46,534,982RGD
Celera1345,381,673 - 45,381,847UniSTS
RH 3.4 Map13174.3RGD
RH 3.4 Map13174.3UniSTS
RH 2.0 Map13375.1RGD
SHRSP x BN Map1314.7498RGD
FHH x ACI Map1318.23RGD
Cytogenetic Map13q13UniSTS
Flank 2: (rs198199323)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01350,897,964 - 50,897,964RGD
Rnor_5.01355,951,501 - 55,951,501RGD
RGSC_v3.41347,010,821 - 47,010,821RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131107975663Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13901674250513953Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1312193394108478121Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131409633059096330Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131409633059096330Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131444158250799665Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131444158251577031Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131981081464810814Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)132005247765052477Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132148248158537177Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1324502279108770533Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132800833873008338Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132858445273584452Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132907693474076934Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132907693474076934Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1335301263107975663Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133614753364868393Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133614753399968921Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133734634882346348Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133937292784372927Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133950130093652524Rat
4889861Pur29Proteinuria QTL 2913.80.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)134231074486833540Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)134231074487310744Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)134250834587508345Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)134250834587508345Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134357571788575717Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134567662990676629Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134644457050799665Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134877665553264877Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134905850767207219Rat
12879436Bp395Blood pressure QTL 395arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134999470851081193Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135026035750897964Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135060922853264877Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135089609150918009Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general software used: statistics - Sigma Plot 11.0 12802368
qtl_trait Brown Norway alleles attenuate hypertension in females (both sexes used) 12802368
qtl_trait_method measurement method: mean arterial pressure was measured in congenic strains after 21 days of 8% NaCl diet. Albumin excretion was measured after 17 days of 8% NaCl diet 12802368