Bss119 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bss119 (Bone structure and strength QTL 119) Rattus norvegicus

Symbol: Bss119
Name: Bone structure and strength QTL 119
RGD ID: 11530002
Trait: lumbar vertebra area   (VT:0010570)    
Measurement Type: lumbar vertebra area   (CMO:0001688)    
LOD Score: 16.39
P Value: 4.0E-17
Variance: Not Available
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01223,920,656 - 24,394,383RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01225,918,064 - 26,391,686RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41222,000,595 - 22,501,174RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: NAft:HS 

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
NAft:HS  (IEA)


References - curated
# Reference Title Reference Citation
1. Fine mapping of bone structure and strength QTLs in heterogeneous stock rat. Alam I, etal., Bone. 2015 Dec;81:417-26. doi: 10.1016/j.bone.2015.08.013. Epub 2015 Aug 19.


Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs197969186)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01223,920,656 - 23,920,656RGD
Rnor_5.01225,918,064 - 25,918,064RGD
RGSC_v3.41222,000,595 - 22,000,595RGD
Peak: (rs196994347)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01224,078,608 - 24,078,608RGD
Rnor_5.01226,075,911 - 26,075,911RGD
RGSC_v3.41222,185,260 - 22,185,260RGD
Flank 2: (rs197046678)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01224,394,383 - 24,394,383RGD
Rnor_5.01226,391,686 - 26,391,686RGD
RGSC_v3.41222,501,174 - 22,501,174RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 1524 HS rats (728 male, 796 female) were used. 11528619
qtl_general measurement method: Rats on a standard diet were euthanized at 17 to 20 weeks of age, and lumbar vertebrae (L3-5) were scanned using DXA (PIXImus II mouse densitometer; Lunar Corp., Madison, WI, USA) with ultra-high resolution (0.18x0.18 mm/pixel). 11528619