Bss118 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: Bss118 (Bone structure and strength QTL 118) Rattus norvegicus

Symbol: Bss118
Name: Bone structure and strength QTL 118
RGD ID: 11528648
Trait: femur strength trait   (VT:0010010)    
Measurement Type: femur ultimate displacement   (CMO:0002719)    
LOD Score: 6.658
P Value: 2.2E-7
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01142,784,725 - 45,474,665RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01145,975,219 - 48,667,416RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41141,400,037 - 44,300,147RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: NAft:HS 



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
NAft:HS  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Fine mapping of bone structure and strength QTLs in heterogeneous stock rat. Alam I, etal., Bone. 2015 Dec;81:417-26. doi: 10.1016/j.bone.2015.08.013. Epub 2015 Aug 19.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs107420884)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01142,784,725 - 42,784,725RGD
Rnor_5.01145,975,219 - 45,975,219RGD
RGSC_v3.41141,400,037 - 41,400,037RGD
Peak: (rs105204296)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,611,977 - 45,611,977RGD
Rnor_5.01148,801,452 - 48,801,452RGD
RGSC_v3.41141,851,716 - 41,851,716RGD
Flank 2: (rs198448974)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,474,665 - 45,474,665RGD
Rnor_5.01148,667,416 - 48,667,416RGD
RGSC_v3.41144,300,147 - 44,300,147RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 1524 HS rats (728 male, 796 female) were used. 11528619
qtl_general measurement method: Rats on a standard diet were euthanized at 17 to 20 weeks of age, and right femurs were analyzed using a material testing machine (Alliance RT/5,MTS Systems Corp., Eden Prairie, USA). 11528619