Bss115 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: Bss115 (Bone structure and strength QTL 115) Rattus norvegicus

Symbol: Bss115
Name: Bone structure and strength QTL 115
RGD ID: 11528644
Trait: femur morphology trait   (VT:0000559)    
Measurement Type: femur head width   (CMO:0002717)    
LOD Score: 6.56
P Value: 2.7E-7
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0887,295,037 - 88,257,646RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0886,839,049 - 87,795,462RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4884,899,992 - 85,799,787RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: NAft:HS 



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
NAft:HS  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Fine mapping of bone structure and strength QTLs in heterogeneous stock rat. Alam I, etal., Bone. 2015 Dec;81:417-26. doi: 10.1016/j.bone.2015.08.013. Epub 2015 Aug 19.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs198738055)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0887,295,037 - 87,295,037RGD
Rnor_5.0886,839,049 - 86,839,049RGD
RGSC_v3.4884,899,992 - 84,899,992RGD
Peak: (rs197056246)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0887,713,278 - 87,713,278RGD
Rnor_5.0887,250,907 - 87,250,907RGD
RGSC_v3.4885,352,278 - 85,352,278RGD
Flank 2: (rs198380959)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0888,257,646 - 88,257,646RGD
Rnor_5.0887,795,462 - 87,795,462RGD
RGSC_v3.4885,799,787 - 85,799,787RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 1524 HS rats (728 male, 796 female) were used. 11528619
qtl_general measurement method: Rats on a standard diet were euthanized at 17 to 20 weeks of age, and left femurs were measured using digital calipers (Mitutoyo, Aurora, IL). 11528619